Query 010784
Match_columns 501
No_of_seqs 711 out of 4400
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 14:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-53 6E-58 413.0 47.4 413 12-473 11-444 (445)
2 3v7d_B Cell division control p 100.0 1.2E-50 4.1E-55 395.5 44.0 412 12-467 7-459 (464)
3 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-49 3.8E-54 384.9 37.6 371 12-474 3-417 (435)
4 1nr0_A Actin interacting prote 100.0 7.6E-47 2.6E-51 380.1 42.4 371 103-493 52-568 (611)
5 1vyh_C Platelet-activating fac 100.0 3.2E-47 1.1E-51 363.9 34.8 293 96-470 94-410 (410)
6 1nr0_A Actin interacting prote 100.0 1.2E-45 4.1E-50 371.4 37.1 352 106-491 143-610 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 5.4E-45 1.8E-49 334.3 36.7 291 102-472 5-303 (304)
8 3ow8_A WD repeat-containing pr 100.0 2.5E-45 8.4E-50 338.7 33.4 283 107-470 29-320 (321)
9 2ymu_A WD-40 repeat protein; u 100.0 8.2E-45 2.8E-49 364.3 39.3 341 100-489 211-577 (577)
10 1got_B GT-beta; complex (GTP-b 100.0 3.5E-44 1.2E-48 334.4 34.7 283 103-468 48-340 (340)
11 4g56_B MGC81050 protein; prote 100.0 3.7E-44 1.3E-48 336.0 32.6 288 107-474 39-346 (357)
12 2pbi_B Guanine nucleotide-bind 100.0 1.5E-43 5.3E-48 331.5 36.0 286 102-468 56-354 (354)
13 4gqb_B Methylosome protein 50; 100.0 5.1E-44 1.8E-48 332.2 31.7 285 109-474 29-334 (344)
14 2ymu_A WD-40 repeat protein; u 100.0 4.9E-43 1.7E-47 351.4 40.0 340 103-491 173-538 (577)
15 3iz6_a 40S ribosomal protein R 100.0 3.4E-44 1.2E-48 339.7 29.7 296 104-474 60-378 (380)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-43 1.3E-47 328.0 34.1 306 105-475 10-339 (345)
17 3frx_A Guanine nucleotide-bind 100.0 6.9E-43 2.4E-47 322.5 35.1 292 103-472 10-318 (319)
18 4ery_A WD repeat-containing pr 100.0 2E-42 6.7E-47 319.0 34.8 292 100-470 13-311 (312)
19 1vyh_C Platelet-activating fac 100.0 1.5E-42 5.2E-47 331.6 33.4 266 144-490 99-409 (410)
20 2xzm_R RACK1; ribosome, transl 100.0 4.5E-42 1.5E-46 320.7 35.5 296 103-473 14-342 (343)
21 2hes_X YDR267CP; beta-propelle 100.0 2.9E-42 9.9E-47 319.9 33.3 298 104-471 8-328 (330)
22 1erj_A Transcriptional repress 100.0 1.4E-41 4.6E-46 323.4 36.0 296 107-472 61-390 (393)
23 1got_B GT-beta; complex (GTP-b 100.0 4.2E-41 1.4E-45 313.6 36.3 270 144-489 46-340 (340)
24 3ow8_A WD repeat-containing pr 100.0 1.5E-41 5.1E-46 313.4 32.3 270 144-490 23-319 (321)
25 2pm9_A Protein WEB1, protein t 100.0 5E-42 1.7E-46 329.7 28.9 335 112-472 14-415 (416)
26 1pgu_A Actin interacting prote 100.0 1.5E-40 5E-45 336.1 39.7 363 103-492 56-614 (615)
27 1r5m_A SIR4-interacting protei 100.0 2.6E-41 8.9E-46 325.5 32.1 322 105-470 40-424 (425)
28 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-40 6.1E-45 361.6 40.8 354 104-493 609-1075(1249)
29 4aow_A Guanine nucleotide-bind 100.0 1.5E-40 5E-45 310.4 34.1 296 102-473 30-339 (340)
30 2ynn_A Coatomer subunit beta'; 100.0 1.4E-40 4.8E-45 304.9 33.3 251 144-474 4-262 (304)
31 3iz6_a 40S ribosomal protein R 100.0 2.2E-41 7.4E-46 320.5 28.8 294 136-493 50-376 (380)
32 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-41 2.2E-45 348.8 33.7 345 108-490 56-659 (902)
33 2pbi_B Guanine nucleotide-bind 100.0 5.2E-40 1.8E-44 307.6 34.8 273 144-489 55-354 (354)
34 3vl1_A 26S proteasome regulato 100.0 5.3E-40 1.8E-44 316.0 35.5 326 113-471 59-419 (420)
35 3frx_A Guanine nucleotide-bind 100.0 6.7E-40 2.3E-44 302.5 32.7 266 144-492 8-317 (319)
36 2oaj_A Protein SNI1; WD40 repe 100.0 7.9E-40 2.7E-44 340.7 36.3 344 103-472 10-520 (902)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.5E-40 2.9E-44 305.3 31.6 279 143-494 5-337 (345)
38 1gxr_A ESG1, transducin-like e 100.0 2.3E-39 7.8E-44 301.9 33.4 317 109-470 8-336 (337)
39 3mkq_A Coatomer beta'-subunit; 100.0 7.6E-39 2.6E-43 334.2 40.8 352 102-490 5-421 (814)
40 1sq9_A Antiviral protein SKI8; 100.0 2.4E-39 8.2E-44 309.0 32.3 299 104-472 10-396 (397)
41 3i2n_A WD repeat-containing pr 100.0 6.7E-39 2.3E-43 301.3 34.1 298 102-473 10-355 (357)
42 4g56_B MGC81050 protein; prote 100.0 4.5E-39 1.6E-43 301.4 31.6 298 114-493 9-344 (357)
43 3dm0_A Maltose-binding peripla 100.0 6.8E-39 2.3E-43 327.7 35.3 294 103-470 375-692 (694)
44 4gqb_B Methylosome protein 50; 100.0 4.4E-39 1.5E-43 299.0 30.8 243 106-424 78-333 (344)
45 2hes_X YDR267CP; beta-propelle 100.0 1.2E-38 4.1E-43 295.6 32.3 278 144-492 5-328 (330)
46 3zwl_B Eukaryotic translation 100.0 4.2E-38 1.4E-42 297.1 36.3 293 104-473 26-348 (369)
47 4e54_B DNA damage-binding prot 100.0 2.4E-39 8.1E-44 312.4 28.0 294 104-474 113-433 (435)
48 1k8k_C P40, ARP2/3 complex 41 100.0 2E-38 6.7E-43 299.9 33.7 314 107-476 5-366 (372)
49 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-39 1.7E-43 350.3 33.6 343 108-491 838-1248(1249)
50 4ery_A WD repeat-containing pr 100.0 7.7E-38 2.6E-42 288.3 35.8 272 143-492 13-312 (312)
51 3ei3_B DNA damage-binding prot 100.0 2.7E-38 9.3E-43 300.2 33.6 290 103-471 66-382 (383)
52 1pgu_A Actin interacting prote 100.0 1.9E-38 6.5E-43 320.6 34.6 333 105-471 155-614 (615)
53 2pm7_B Protein transport prote 100.0 4E-38 1.4E-42 287.6 32.3 260 146-473 2-287 (297)
54 3dwl_C Actin-related protein 2 100.0 1.1E-38 3.6E-43 302.4 28.1 265 106-421 7-280 (377)
55 2j04_B YDR362CP, TAU91; beta p 100.0 8.1E-39 2.8E-43 311.9 27.5 328 107-472 130-518 (524)
56 3odt_A Protein DOA1; ubiquitin 100.0 9E-38 3.1E-42 287.9 32.2 283 102-474 10-299 (313)
57 2xzm_R RACK1; ribosome, transl 100.0 1.1E-37 3.8E-42 290.9 30.8 274 144-493 12-341 (343)
58 1r5m_A SIR4-interacting protei 100.0 1.6E-37 5.5E-42 299.0 32.8 302 132-472 25-362 (425)
59 3k26_A Polycomb protein EED; W 100.0 6.5E-38 2.2E-42 295.5 28.0 320 107-470 15-365 (366)
60 3gre_A Serine/threonine-protei 100.0 5.8E-38 2E-42 303.4 27.6 305 96-468 48-437 (437)
61 2pm9_A Protein WEB1, protein t 100.0 1.2E-37 4.1E-42 299.1 29.2 286 154-471 13-337 (416)
62 1erj_A Transcriptional repress 100.0 4.1E-37 1.4E-41 292.5 31.9 266 151-493 62-390 (393)
63 4ggc_A P55CDC, cell division c 100.0 1.6E-36 5.6E-41 280.2 34.9 278 113-472 28-316 (318)
64 4gga_A P55CDC, cell division c 100.0 7.3E-37 2.5E-41 293.7 33.7 278 113-472 108-396 (420)
65 4a11_B DNA excision repair pro 100.0 1.5E-36 5E-41 290.7 34.7 332 104-492 37-405 (408)
66 4h5i_A Guanine nucleotide-exch 100.0 1.1E-37 3.9E-42 292.7 26.3 303 105-474 9-346 (365)
67 4aow_A Guanine nucleotide-bind 100.0 1.1E-36 3.7E-41 284.2 31.7 270 144-494 29-339 (340)
68 2pm7_B Protein transport prote 100.0 1.2E-36 4E-41 277.9 29.7 256 106-421 5-284 (297)
69 3dw8_B Serine/threonine-protei 100.0 1.1E-36 3.9E-41 295.3 30.4 298 109-469 27-444 (447)
70 4aez_A CDC20, WD repeat-contai 100.0 1.8E-36 6.2E-41 289.2 31.1 279 113-475 96-384 (401)
71 3dm0_A Maltose-binding peripla 100.0 1.2E-36 4.2E-41 311.0 31.3 269 145-492 374-693 (694)
72 3v7d_B Cell division control p 100.0 1.3E-35 4.4E-40 289.3 36.9 290 144-475 112-425 (464)
73 3bg1_A Protein SEC13 homolog; 100.0 5.8E-37 2E-41 282.4 23.8 256 105-421 8-292 (316)
74 3bg1_A Protein SEC13 homolog; 100.0 7.6E-37 2.6E-41 281.6 24.1 257 147-473 7-295 (316)
75 3mkq_A Coatomer beta'-subunit; 100.0 2.9E-35 9.9E-40 307.1 38.4 348 104-493 49-461 (814)
76 1gxr_A ESG1, transducin-like e 100.0 4.2E-35 1.4E-39 273.0 34.9 277 105-420 46-335 (337)
77 3dwl_C Actin-related protein 2 100.0 6.8E-37 2.3E-41 289.9 22.9 251 149-470 7-280 (377)
78 4e54_B DNA damage-binding prot 100.0 1.8E-35 6.1E-40 285.3 30.5 281 144-493 110-431 (435)
79 1yfq_A Cell cycle arrest prote 100.0 3.5E-35 1.2E-39 274.2 31.5 281 108-469 9-322 (342)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 3.6E-35 1.2E-39 280.4 31.3 284 112-474 36-345 (402)
81 3jrp_A Fusion protein of prote 100.0 2.9E-35 9.8E-40 278.8 30.2 263 144-473 2-289 (379)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-34 1.3E-38 277.1 38.5 299 144-492 109-442 (445)
83 3gre_A Serine/threonine-protei 100.0 1.1E-35 3.6E-40 287.5 27.1 280 116-473 33-361 (437)
84 1k8k_C P40, ARP2/3 complex 41 100.0 5E-35 1.7E-39 276.5 30.6 253 149-471 4-274 (372)
85 3zwl_B Eukaryotic translation 100.0 1E-34 3.4E-39 274.0 32.3 279 144-493 23-347 (369)
86 3f3f_A Nucleoporin SEH1; struc 100.0 4.9E-35 1.7E-39 273.7 28.8 301 104-474 5-340 (351)
87 3ei3_B DNA damage-binding prot 100.0 4.5E-35 1.5E-39 278.0 28.6 272 143-492 63-382 (383)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-35 6.3E-40 280.6 25.4 290 107-491 12-320 (588)
89 3mmy_A MRNA export factor; mRN 100.0 1.3E-34 4.5E-39 273.1 30.7 287 143-470 29-345 (368)
90 3k26_A Polycomb protein EED; W 100.0 5E-35 1.7E-39 275.8 27.7 281 147-491 12-365 (366)
91 3vl1_A 26S proteasome regulato 100.0 2.6E-35 8.9E-40 283.3 26.1 276 154-471 57-365 (420)
92 3odt_A Protein DOA1; ubiquitin 100.0 5.1E-34 1.8E-38 262.7 31.8 268 140-494 5-298 (313)
93 1sq9_A Antiviral protein SKI8; 100.0 7.3E-35 2.5E-39 278.0 26.9 265 144-470 7-321 (397)
94 3jrp_A Fusion protein of prote 100.0 5.7E-34 2E-38 269.8 32.7 260 104-423 5-288 (379)
95 2xyi_A Probable histone-bindin 100.0 1.6E-33 5.5E-38 271.1 35.1 309 94-471 26-410 (430)
96 3i2n_A WD repeat-containing pr 100.0 2.6E-34 8.8E-39 270.0 27.6 275 145-493 10-354 (357)
97 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.3E-39 282.3 23.3 328 152-492 132-517 (524)
98 4aez_A CDC20, WD repeat-contai 100.0 3E-33 1E-37 266.9 31.8 249 178-494 103-382 (401)
99 4gga_A P55CDC, cell division c 100.0 5.5E-33 1.9E-37 266.7 29.9 248 109-429 146-402 (420)
100 3jro_A Fusion protein of prote 100.0 1.5E-33 5E-38 289.7 27.6 258 105-422 4-285 (753)
101 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-32 4.9E-37 265.1 32.0 256 150-494 130-416 (435)
102 3jro_A Fusion protein of prote 100.0 2E-33 6.8E-38 288.7 27.4 262 146-474 2-288 (753)
103 4a11_B DNA excision repair pro 100.0 1.1E-32 3.7E-37 263.8 30.3 295 131-495 22-368 (408)
104 4gq1_A NUP37; propeller, trans 100.0 3.4E-33 1.2E-37 265.3 24.9 306 123-468 32-386 (393)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.7E-32 1.9E-36 262.1 33.6 285 111-473 5-393 (450)
106 3dw8_B Serine/threonine-protei 100.0 1.2E-32 4.2E-37 266.9 28.8 266 151-476 26-378 (447)
107 3mmy_A MRNA export factor; mRN 100.0 9E-33 3.1E-37 260.5 26.5 286 105-422 34-346 (368)
108 2xyi_A Probable histone-bindin 100.0 4.4E-32 1.5E-36 261.0 30.1 258 104-423 122-411 (430)
109 1yfq_A Cell cycle arrest prote 100.0 9.1E-32 3.1E-36 251.0 29.2 258 147-474 5-285 (342)
110 3lrv_A PRE-mRNA-splicing facto 100.0 4E-32 1.4E-36 253.4 26.6 269 118-473 44-335 (343)
111 4ggc_A P55CDC, cell division c 100.0 9E-31 3.1E-35 241.6 34.9 259 156-493 28-316 (318)
112 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-31 7.6E-36 249.1 30.8 290 136-473 3-338 (355)
113 3f3f_A Nucleoporin SEH1; struc 100.0 3.5E-31 1.2E-35 247.5 30.2 291 146-494 4-339 (351)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-31 9.9E-36 253.3 29.0 248 155-473 36-301 (402)
115 4h5i_A Guanine nucleotide-exch 100.0 2.4E-31 8.2E-36 249.7 24.8 245 108-422 71-343 (365)
116 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-32 1.7E-36 257.2 20.0 289 107-458 49-350 (588)
117 3vu4_A KMHSV2; beta-propeller 100.0 2E-30 6.9E-35 242.6 28.0 248 195-472 8-272 (355)
118 2w18_A PALB2, fancn, partner a 100.0 4.4E-30 1.5E-34 229.0 27.9 268 113-470 42-356 (356)
119 3bws_A Protein LP49; two-domai 100.0 1.4E-29 4.8E-34 244.3 33.1 278 108-470 120-431 (433)
120 3lrv_A PRE-mRNA-splicing facto 100.0 8.8E-30 3E-34 237.5 26.6 234 177-472 47-293 (343)
121 1l0q_A Surface layer protein; 100.0 1.9E-28 6.4E-33 233.1 35.0 270 122-432 2-285 (391)
122 4gq1_A NUP37; propeller, trans 100.0 9.6E-30 3.3E-34 241.5 22.9 268 113-421 92-388 (393)
123 3bws_A Protein LP49; two-domai 100.0 2.3E-28 7.9E-33 235.8 30.9 283 128-492 95-432 (433)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-28 4.8E-33 238.2 29.2 243 154-469 5-337 (450)
125 1nir_A Nitrite reductase; hemo 100.0 2.8E-27 9.5E-32 232.6 31.7 345 116-491 143-539 (543)
126 1l0q_A Surface layer protein; 100.0 1.1E-26 3.6E-31 221.0 33.2 261 178-472 2-276 (391)
127 2w18_A PALB2, fancn, partner a 100.0 1.1E-26 3.8E-31 207.2 24.0 184 177-420 144-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-26 2.5E-30 216.0 25.3 295 112-479 64-395 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-24 4.3E-29 224.3 27.1 318 110-470 36-458 (741)
130 1k32_A Tricorn protease; prote 99.9 7.4E-23 2.5E-27 218.2 36.6 330 101-473 43-463 (1045)
131 3u4y_A Uncharacterized protein 99.9 9.3E-23 3.2E-27 189.0 31.7 301 120-491 8-325 (331)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.4E-23 1.9E-27 196.1 29.9 233 132-451 159-410 (415)
133 1nir_A Nitrite reductase; hemo 99.9 7.4E-23 2.5E-27 201.1 31.0 296 112-430 180-522 (543)
134 2ojh_A Uncharacterized protein 99.9 1E-22 3.4E-27 185.4 25.1 257 126-459 16-292 (297)
135 1k32_A Tricorn protease; prote 99.9 5.7E-22 1.9E-26 211.4 30.9 305 114-470 110-501 (1045)
136 1xfd_A DIP, dipeptidyl aminope 99.9 4.6E-22 1.6E-26 204.6 29.1 313 113-458 19-429 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-22 6.2E-27 206.9 25.9 313 113-473 28-437 (706)
138 1ri6_A Putative isomerase YBHE 99.9 1.5E-21 5.1E-26 181.8 28.6 277 122-471 5-308 (343)
139 3vgz_A Uncharacterized protein 99.9 5.4E-21 1.8E-25 178.8 31.5 270 109-458 39-333 (353)
140 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-21 1.4E-25 197.9 27.4 281 153-471 36-413 (741)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 4.7E-21 1.6E-25 183.2 24.7 248 153-470 36-332 (434)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-20 7.7E-25 178.5 28.3 203 112-377 38-280 (434)
143 2ojh_A Uncharacterized protein 99.9 1.6E-20 5.6E-25 170.6 22.8 240 100-412 31-292 (297)
144 1pby_B Quinohemoprotein amine 99.9 1.7E-20 5.7E-25 174.2 23.1 269 123-431 2-319 (337)
145 3hfq_A Uncharacterized protein 99.9 1.3E-19 4.6E-24 168.9 29.2 268 130-471 14-317 (347)
146 3o4h_A Acylamino-acid-releasin 99.9 1.5E-20 5.2E-25 188.0 24.0 266 112-470 23-314 (582)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-19 6.1E-24 184.7 32.2 279 111-424 82-437 (706)
148 3u4y_A Uncharacterized protein 99.9 8.6E-20 3E-24 169.0 26.6 251 177-492 9-304 (331)
149 1z68_A Fibroblast activation p 99.9 1.9E-20 6.5E-25 192.3 24.3 323 114-473 19-445 (719)
150 1pby_B Quinohemoprotein amine 99.9 4.9E-20 1.7E-24 171.0 24.1 262 179-474 2-313 (337)
151 1xfd_A DIP, dipeptidyl aminope 99.9 3.7E-20 1.3E-24 190.4 23.6 282 155-472 18-394 (723)
152 1ri6_A Putative isomerase YBHE 99.8 9.1E-19 3.1E-23 162.8 28.2 274 107-451 34-335 (343)
153 3vgz_A Uncharacterized protein 99.8 2.1E-18 7E-23 161.2 27.7 239 153-474 40-306 (353)
154 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-18 4.1E-23 162.5 25.3 273 173-474 6-328 (349)
155 1jmx_B Amine dehydrogenase; ox 99.8 1.9E-18 6.3E-23 161.2 25.2 282 115-430 4-333 (349)
156 3o4h_A Acylamino-acid-releasin 99.8 6.1E-19 2.1E-23 176.4 22.7 230 153-469 21-274 (582)
157 3hfq_A Uncharacterized protein 99.8 5.9E-18 2E-22 157.7 27.8 258 106-426 35-323 (347)
158 3scy_A Hypothetical bacterial 99.8 4.5E-17 1.5E-21 152.6 32.5 289 119-472 10-338 (361)
159 3pe7_A Oligogalacturonate lyas 99.8 3.5E-18 1.2E-22 161.9 21.7 284 115-472 40-383 (388)
160 3scy_A Hypothetical bacterial 99.8 1.9E-16 6.3E-21 148.4 29.8 271 109-447 48-360 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.8E-17 6E-22 170.3 24.6 312 113-471 19-398 (740)
162 3azo_A Aminopeptidase; POP fam 99.8 1.6E-16 5.5E-21 161.5 30.4 284 109-473 22-371 (662)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.9E-17 1.3E-21 153.1 23.9 271 132-472 14-342 (365)
164 1z68_A Fibroblast activation p 99.8 1.1E-17 3.6E-22 171.9 20.0 274 158-471 20-391 (719)
165 2oiz_A Aromatic amine dehydrog 99.8 1.9E-16 6.6E-21 147.6 24.5 280 130-451 29-360 (361)
166 3fvz_A Peptidyl-glycine alpha- 99.7 1.1E-15 3.7E-20 141.0 27.9 252 153-471 23-322 (329)
167 3fvz_A Peptidyl-glycine alpha- 99.7 7.8E-16 2.7E-20 141.9 25.9 238 112-422 25-322 (329)
168 1q7f_A NHL, brain tumor CG1071 99.7 6.1E-15 2.1E-19 133.2 30.7 242 150-472 26-281 (286)
169 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-16 9.5E-21 161.4 23.4 285 154-478 17-360 (740)
170 3c5m_A Oligogalacturonate lyas 99.7 1.4E-16 4.9E-21 151.2 19.7 282 113-470 38-381 (396)
171 2dg1_A DRP35, lactonase; beta 99.7 4.2E-15 1.4E-19 137.5 27.7 273 111-458 6-299 (333)
172 1q7f_A NHL, brain tumor CG1071 99.7 9.1E-15 3.1E-19 132.0 28.8 233 112-424 31-282 (286)
173 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.5E-15 5.2E-20 142.3 22.6 247 111-423 40-342 (365)
174 3pe7_A Oligogalacturonate lyas 99.7 3E-15 1E-19 141.6 23.8 280 138-475 16-333 (388)
175 3azo_A Aminopeptidase; POP fam 99.7 9.4E-15 3.2E-19 148.5 24.8 251 146-470 16-322 (662)
176 1qks_A Cytochrome CD1 nitrite 99.7 4.3E-13 1.5E-17 131.4 33.2 330 118-474 163-541 (567)
177 2z2n_A Virginiamycin B lyase; 99.6 2E-12 6.9E-17 117.3 35.0 276 111-471 15-295 (299)
178 1rwi_B Serine/threonine-protei 99.6 1.8E-13 6.2E-18 122.3 26.8 238 112-425 25-267 (270)
179 2oiz_A Aromatic amine dehydrog 99.6 1.2E-13 4E-18 128.8 25.4 259 115-403 54-358 (361)
180 2gop_A Trilobed protease; beta 99.6 8.7E-14 3E-18 129.4 24.5 253 113-470 17-330 (347)
181 3e5z_A Putative gluconolactona 99.6 2.1E-13 7.1E-18 123.8 25.1 228 146-457 20-275 (296)
182 3dsm_A Uncharacterized protein 99.6 7.7E-13 2.6E-17 121.6 28.5 258 186-470 15-301 (328)
183 3dsm_A Uncharacterized protein 99.6 2.3E-12 7.8E-17 118.5 31.5 261 130-430 15-309 (328)
184 2bkl_A Prolyl endopeptidase; m 99.6 9.4E-14 3.2E-18 141.6 22.5 248 151-474 118-400 (695)
185 1rwi_B Serine/threonine-protei 99.6 7E-13 2.4E-17 118.4 25.6 236 155-473 25-266 (270)
186 3no2_A Uncharacterized protein 99.6 5.4E-13 1.8E-17 119.0 24.5 231 120-430 3-260 (276)
187 3c5m_A Oligogalacturonate lyas 99.6 5.5E-14 1.9E-18 133.2 18.0 270 138-474 16-332 (396)
188 2xdw_A Prolyl endopeptidase; a 99.6 6.1E-13 2.1E-17 136.0 26.4 249 151-473 122-416 (710)
189 2xdw_A Prolyl endopeptidase; a 99.6 7.3E-13 2.5E-17 135.4 26.6 239 113-424 127-416 (710)
190 2qc5_A Streptogramin B lactona 99.6 2.3E-11 8E-16 110.2 33.3 273 111-468 20-297 (300)
191 2dg1_A DRP35, lactonase; beta 99.6 4.7E-13 1.6E-17 123.6 21.7 230 177-470 16-262 (333)
192 3e5z_A Putative gluconolactona 99.6 4.2E-12 1.4E-16 115.1 27.4 240 105-377 22-288 (296)
193 1qks_A Cytochrome CD1 nitrite 99.6 1E-11 3.5E-16 121.7 31.7 296 111-430 197-546 (567)
194 3sjl_D Methylamine dehydrogena 99.5 3E-12 1E-16 117.6 24.0 287 118-449 40-384 (386)
195 3no2_A Uncharacterized protein 99.5 3.8E-12 1.3E-16 113.5 23.7 220 177-457 4-231 (276)
196 2bkl_A Prolyl endopeptidase; m 99.5 1.5E-12 5.1E-17 132.7 22.9 237 112-425 122-400 (695)
197 2gop_A Trilobed protease; beta 99.5 2.1E-12 7.1E-17 120.0 21.7 222 111-424 59-332 (347)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.3E-16 112.9 26.0 243 152-473 16-301 (314)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2E-11 6.9E-16 111.5 27.0 240 109-422 16-299 (314)
200 1yr2_A Prolyl oligopeptidase; 99.5 3E-12 1E-16 131.5 21.0 250 151-474 160-444 (741)
201 2mad_H Methylamine dehydrogena 99.5 1.4E-10 4.9E-15 107.9 30.5 257 133-429 48-357 (373)
202 2z2n_A Virginiamycin B lyase; 99.5 2.9E-10 9.9E-15 102.9 31.5 239 150-469 11-253 (299)
203 3hrp_A Uncharacterized protein 99.4 1.6E-10 5.6E-15 109.2 27.7 247 112-420 132-408 (409)
204 2mad_H Methylamine dehydrogena 99.4 7.4E-10 2.5E-14 103.2 30.9 266 177-475 31-354 (373)
205 3sjl_D Methylamine dehydrogena 99.4 9.9E-11 3.4E-15 107.5 24.1 273 175-474 41-366 (386)
206 1fs1_A SKP2 F-BOX, cyclin A/CD 99.4 2.7E-13 9.3E-18 86.2 4.3 47 17-63 6-52 (53)
207 3g4e_A Regucalcin; six bladed 99.3 5.5E-10 1.9E-14 101.0 25.0 233 152-458 11-261 (297)
208 3hrp_A Uncharacterized protein 99.3 6.2E-10 2.1E-14 105.2 26.3 242 155-469 132-408 (409)
209 2qc5_A Streptogramin B lactona 99.3 8.3E-09 2.8E-13 93.3 32.5 238 151-469 17-258 (300)
210 1yr2_A Prolyl oligopeptidase; 99.3 1.2E-10 4.1E-15 119.5 21.8 238 112-424 164-443 (741)
211 1xip_A Nucleoporin NUP159; bet 99.3 1.3E-10 4.3E-15 107.3 17.9 144 112-292 39-193 (388)
212 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.8E-09 1.3E-13 99.1 28.2 295 124-468 55-375 (376)
213 3g4e_A Regucalcin; six bladed 99.3 1.9E-09 6.5E-14 97.4 24.9 227 113-412 15-263 (297)
214 3hxj_A Pyrrolo-quinoline quino 99.3 3.1E-10 1.1E-14 104.4 19.8 299 114-471 23-324 (330)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 1.3E-08 4.5E-13 93.2 29.8 225 156-458 51-291 (326)
216 1xip_A Nucleoporin NUP159; bet 99.2 9.5E-11 3.2E-15 108.1 14.6 182 260-457 39-232 (388)
217 3c75_H MADH, methylamine dehyd 99.2 2E-09 6.9E-14 100.8 23.5 271 177-475 83-406 (426)
218 2qe8_A Uncharacterized protein 99.2 2.6E-10 8.7E-15 105.5 17.5 269 111-468 17-318 (343)
219 3c75_H MADH, methylamine dehyd 99.2 8.9E-10 3E-14 103.1 21.1 259 132-429 99-409 (426)
220 3dr2_A Exported gluconolactona 99.2 7.5E-09 2.6E-13 93.9 22.5 233 196-457 34-295 (305)
221 1mda_H Methylamine dehydrogena 99.2 1.9E-09 6.5E-14 99.2 18.5 256 133-431 47-355 (368)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 3.7E-08 1.2E-12 90.2 27.1 223 113-412 51-293 (326)
223 3dr2_A Exported gluconolactona 99.1 1.2E-08 4.1E-13 92.5 23.2 234 106-373 40-304 (305)
224 1kb0_A Quinohemoprotein alcoho 99.1 6E-09 2E-13 105.0 22.6 289 127-455 82-536 (677)
225 3l2o_B F-box only protein 4; s 99.1 2.7E-11 9.1E-16 103.7 4.5 49 19-67 4-52 (312)
226 1yiq_A Quinohemoprotein alcoho 99.1 7E-09 2.4E-13 104.7 23.0 295 125-455 73-534 (689)
227 3iuj_A Prolyl endopeptidase; h 99.1 1E-08 3.5E-13 104.2 23.4 234 113-425 131-408 (693)
228 2e31_A FBS1, F-box only protei 99.1 9.3E-11 3.2E-15 102.1 6.5 74 17-92 48-124 (297)
229 2hz6_A Endoplasmic reticulum t 99.1 1.2E-11 4.2E-16 115.3 1.0 200 177-452 8-217 (369)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.4E-08 2.9E-12 89.8 26.9 266 177-474 52-340 (376)
231 3iuj_A Prolyl endopeptidase; h 99.1 1.8E-08 6.2E-13 102.4 22.7 247 151-474 126-408 (693)
232 1fwx_A Nitrous oxide reductase 99.0 9.7E-09 3.3E-13 98.4 17.4 265 177-475 100-435 (595)
233 1kb0_A Quinohemoprotein alcoho 99.0 7.5E-08 2.6E-12 97.0 24.2 274 178-474 77-510 (677)
234 1yiq_A Quinohemoprotein alcoho 99.0 7.8E-08 2.7E-12 97.1 23.9 276 178-475 70-509 (689)
235 1mda_H Methylamine dehydrogena 99.0 2.2E-08 7.6E-13 92.1 17.5 259 179-474 33-349 (368)
236 3hxj_A Pyrrolo-quinoline quino 99.0 6.5E-08 2.2E-12 88.7 20.8 249 178-469 30-282 (330)
237 2hz6_A Endoplasmic reticulum t 99.0 7.6E-10 2.6E-14 103.2 7.0 261 121-422 8-279 (369)
238 1npe_A Nidogen, entactin; glyc 98.9 4.2E-06 1.4E-10 74.0 29.8 250 124-451 3-263 (267)
239 4a2l_A BT_4663, two-component 98.9 6.9E-06 2.4E-10 84.9 34.6 325 112-471 89-436 (795)
240 4a2l_A BT_4663, two-component 98.9 2.6E-05 8.8E-10 80.7 38.3 307 112-456 264-603 (795)
241 2ece_A 462AA long hypothetical 98.8 9.9E-07 3.4E-11 81.7 23.2 232 220-457 93-399 (462)
242 2iwa_A Glutamine cyclotransfer 98.8 1E-06 3.6E-11 76.5 21.8 200 260-473 22-239 (266)
243 3nol_A Glutamine cyclotransfer 98.8 5.5E-07 1.9E-11 77.2 19.3 182 260-458 44-244 (262)
244 2iwa_A Glutamine cyclotransfer 98.8 6.6E-06 2.3E-10 71.4 24.7 191 209-423 23-238 (266)
245 1npe_A Nidogen, entactin; glyc 98.8 9E-06 3.1E-10 71.9 26.5 219 111-358 36-263 (267)
246 3nok_A Glutaminyl cyclase; bet 98.8 9.4E-07 3.2E-11 75.7 18.8 182 260-457 56-253 (268)
247 2qe8_A Uncharacterized protein 98.8 2.9E-07 9.9E-12 84.9 16.9 224 154-470 17-277 (343)
248 3v9f_A Two-component system se 98.7 0.0001 3.5E-09 76.0 37.1 316 112-471 212-568 (781)
249 3v9f_A Two-component system se 98.7 3.6E-05 1.2E-09 79.4 33.4 308 112-456 259-600 (781)
250 3mbr_X Glutamine cyclotransfer 98.7 6.7E-06 2.3E-10 69.9 22.0 183 259-458 21-223 (243)
251 3nol_A Glutamine cyclotransfer 98.7 7.6E-06 2.6E-10 70.1 22.4 191 198-409 33-243 (262)
252 2ece_A 462AA long hypothetical 98.7 3.1E-06 1.1E-10 78.4 21.2 201 120-376 93-353 (462)
253 3nok_A Glutaminyl cyclase; bet 98.7 3.9E-06 1.3E-10 71.9 20.2 190 198-409 45-253 (268)
254 1kv9_A Type II quinohemoprotei 98.7 3.7E-06 1.3E-10 84.6 23.6 274 178-474 66-491 (668)
255 3v64_C Agrin; beta propeller, 98.6 0.00031 1E-08 64.5 33.9 246 110-430 33-283 (349)
256 3v65_B Low-density lipoprotein 98.6 0.00019 6.6E-09 66.9 31.8 244 112-430 78-326 (386)
257 1kv9_A Type II quinohemoprotei 98.6 3.5E-06 1.2E-10 84.8 21.1 289 128-457 72-520 (668)
258 3mbr_X Glutamine cyclotransfer 98.6 2E-05 6.7E-10 67.0 22.3 182 207-409 21-222 (243)
259 2ad6_A Methanol dehydrogenase 98.6 3.4E-05 1.2E-09 75.9 27.0 256 177-457 114-525 (571)
260 1w6s_A Methanol dehydrogenase 98.6 4.2E-05 1.4E-09 75.3 26.3 78 368-457 455-535 (599)
261 2fp8_A Strictosidine synthase; 98.5 3E-05 1E-09 70.6 22.8 120 348-477 187-319 (322)
262 2p4o_A Hypothetical protein; p 98.5 0.00016 5.3E-09 65.2 26.9 234 154-458 32-277 (306)
263 2fp8_A Strictosidine synthase; 98.5 4.9E-05 1.7E-09 69.2 23.6 235 111-422 19-313 (322)
264 1flg_A Protein (quinoprotein e 98.5 7.7E-05 2.6E-09 73.5 25.8 80 366-457 465-548 (582)
265 2ad6_A Methanol dehydrogenase 98.4 0.0001 3.5E-09 72.6 25.9 235 222-474 115-497 (571)
266 1w6s_A Methanol dehydrogenase 98.4 0.00017 5.9E-09 71.0 25.7 145 225-379 124-346 (599)
267 3v64_C Agrin; beta propeller, 98.4 0.0014 4.8E-08 60.1 32.2 219 188-473 53-277 (349)
268 3s94_A LRP-6, low-density lipo 98.3 0.0033 1.1E-07 62.4 39.6 323 112-471 41-423 (619)
269 3v65_B Low-density lipoprotein 98.3 0.0013 4.4E-08 61.3 28.8 220 187-473 95-320 (386)
270 3p5b_L Low density lipoprotein 98.3 0.0024 8.3E-08 59.7 31.5 227 132-430 92-328 (400)
271 1k3i_A Galactose oxidase precu 98.2 0.00011 3.9E-09 73.9 21.6 268 113-411 188-530 (656)
272 3sov_A LRP-6, low-density lipo 98.2 0.0025 8.7E-08 57.4 30.4 229 131-430 12-246 (318)
273 1ijq_A LDL receptor, low-densi 98.2 0.0026 8.9E-08 57.4 30.1 228 132-430 10-246 (316)
274 1k3i_A Galactose oxidase precu 98.2 9.8E-05 3.4E-09 74.4 20.9 264 177-458 197-530 (656)
275 1flg_A Protein (quinoprotein e 98.2 0.0011 3.8E-08 65.2 26.8 56 411-474 464-519 (582)
276 3m0c_C LDL receptor, low-densi 98.2 0.0069 2.3E-07 61.7 33.0 243 113-429 387-639 (791)
277 2p4o_A Hypothetical protein; p 98.2 0.0017 6E-08 58.3 26.1 227 111-364 32-276 (306)
278 1fwx_A Nitrous oxide reductase 98.2 0.00013 4.4E-09 70.3 18.7 183 271-471 101-361 (595)
279 3tc9_A Hypothetical hydrolase; 98.1 0.0032 1.1E-07 59.6 26.6 235 178-470 149-429 (430)
280 3qqz_A Putative uncharacterize 98.1 0.0024 8.1E-08 55.1 23.2 204 253-468 21-250 (255)
281 2xbg_A YCF48-like protein; pho 98.0 0.0086 2.9E-07 54.3 26.9 233 112-420 81-320 (327)
282 3m0c_C LDL receptor, low-densi 98.0 0.0088 3E-07 60.9 29.2 225 231-474 403-635 (791)
283 3ei3_A DNA damage-binding prot 98.0 0.016 5.4E-07 61.8 31.8 323 112-473 515-915 (1158)
284 4hw6_A Hypothetical protein, I 98.0 0.0076 2.6E-07 56.9 26.6 234 178-470 153-432 (433)
285 3p5b_L Low density lipoprotein 97.9 0.014 4.9E-07 54.4 30.5 232 180-474 85-323 (400)
286 1n7d_A LDL receptor, low-densi 97.9 0.00012 4.2E-09 73.8 14.1 228 132-430 386-622 (699)
287 1ijq_A LDL receptor, low-densi 97.9 0.013 4.3E-07 52.9 30.1 220 188-473 10-240 (316)
288 2xbg_A YCF48-like protein; pho 97.9 0.013 4.5E-07 53.0 32.2 273 110-468 35-319 (327)
289 2ast_B S-phase kinase-associat 97.9 4.4E-06 1.5E-10 76.7 2.9 48 17-64 6-53 (336)
290 3s94_A LRP-6, low-density lipo 97.9 0.025 8.7E-07 56.0 35.3 321 111-468 84-464 (619)
291 2xe4_A Oligopeptidase B; hydro 97.9 0.0033 1.1E-07 64.3 23.9 153 113-290 176-354 (751)
292 4a0p_A LRP6, LRP-6, low-densit 97.9 0.028 9.5E-07 55.8 39.4 324 112-470 38-419 (628)
293 2xe4_A Oligopeptidase B; hydro 97.8 0.0032 1.1E-07 64.4 22.6 159 208-422 175-354 (751)
294 3sov_A LRP-6, low-density lipo 97.8 0.019 6.3E-07 51.7 27.0 220 231-474 12-241 (318)
295 3tc9_A Hypothetical hydrolase; 97.8 0.0087 3E-07 56.5 23.3 152 112-290 138-301 (430)
296 3kya_A Putative phosphatase; s 97.7 0.016 5.3E-07 55.2 24.2 252 178-474 152-478 (496)
297 3qqz_A Putative uncharacterize 97.7 0.021 7E-07 49.2 25.2 207 148-373 21-251 (255)
298 3amr_A 3-phytase; beta-propell 97.7 0.0089 3.1E-07 53.6 20.6 209 176-430 38-272 (355)
299 4hw6_A Hypothetical protein, I 97.7 0.023 7.9E-07 53.6 24.8 234 113-374 141-432 (433)
300 1n7d_A LDL receptor, low-densi 97.7 0.00099 3.4E-08 67.2 15.8 208 111-343 406-623 (699)
301 2xzh_A Clathrin heavy chain 1; 97.5 0.044 1.5E-06 48.3 26.5 221 231-477 48-296 (365)
302 3ei3_A DNA damage-binding prot 97.5 0.16 5.6E-06 54.1 33.3 271 179-470 524-872 (1158)
303 2vpj_A Kelch-like protein 12; 97.4 0.034 1.2E-06 49.5 21.7 230 221-473 14-280 (301)
304 1bpo_A Protein (clathrin); cla 97.4 0.074 2.5E-06 48.9 27.6 222 230-477 46-295 (494)
305 3amr_A 3-phytase; beta-propell 97.3 0.066 2.3E-06 48.0 21.5 201 219-473 37-265 (355)
306 1zgk_A Kelch-like ECH-associat 97.2 0.092 3.2E-06 46.9 21.7 230 221-473 24-289 (308)
307 3pbp_A Nucleoporin NUP82; beta 97.2 0.022 7.6E-07 52.2 17.1 156 312-467 28-208 (452)
308 2p9w_A MAL S 1 allergenic prot 97.2 0.029 9.9E-07 49.9 17.4 172 256-472 10-216 (334)
309 3ii7_A Kelch-like protein 7; p 97.1 0.12 4.1E-06 46.0 21.7 227 222-473 12-274 (306)
310 2p1m_B Transport inhibitor res 97.0 0.00031 1E-08 70.0 3.8 36 18-53 4-40 (594)
311 2xn4_A Kelch-like protein 2; s 97.0 0.1 3.5E-06 46.4 20.1 229 222-473 16-278 (302)
312 3ott_A Two-component system se 97.0 0.37 1.3E-05 49.2 33.2 307 111-455 22-340 (758)
313 4a0p_A LRP6, LRP-6, low-densit 97.0 0.32 1.1E-05 48.3 40.6 307 112-456 81-450 (628)
314 3ii7_A Kelch-like protein 7; p 97.0 0.19 6.5E-06 44.7 21.4 186 221-424 55-274 (306)
315 2xzh_A Clathrin heavy chain 1; 97.0 0.18 6.2E-06 44.5 30.8 275 115-472 30-333 (365)
316 2xn4_A Kelch-like protein 2; s 96.9 0.19 6.4E-06 44.7 20.7 182 177-377 61-278 (302)
317 2p9w_A MAL S 1 allergenic prot 96.9 0.23 7.8E-06 44.2 22.3 164 155-375 14-215 (334)
318 2vpj_A Kelch-like protein 12; 96.8 0.26 9E-06 43.6 23.3 181 177-376 62-279 (301)
319 4asc_A Kelch repeat and BTB do 96.7 0.31 1.1E-05 43.5 21.1 211 224-458 7-252 (315)
320 2ism_A Putative oxidoreductase 96.7 0.37 1.3E-05 43.9 25.6 60 393-457 268-333 (352)
321 2uvk_A YJHT; unknown function, 96.5 0.25 8.5E-06 45.1 19.0 68 221-293 19-98 (357)
322 2woz_A Kelch repeat and BTB do 96.5 0.42 1.4E-05 42.7 20.5 106 221-337 109-234 (318)
323 3ogk_B Coronatine-insensitive 96.4 0.0011 3.8E-08 65.8 2.4 33 21-53 14-47 (592)
324 3sre_A PON1, serum paraoxonase 96.4 0.18 6E-06 45.8 16.6 71 346-420 221-296 (355)
325 3kya_A Putative phosphatase; s 96.4 0.71 2.4E-05 43.9 25.9 243 113-378 141-478 (496)
326 4asc_A Kelch repeat and BTB do 96.3 0.42 1.4E-05 42.6 18.7 132 221-365 98-252 (315)
327 1zgk_A Kelch-like ECH-associat 96.2 0.64 2.2E-05 41.3 20.2 143 221-376 121-288 (308)
328 1xi4_A Clathrin heavy chain; a 96.1 0.9 3.1E-05 48.7 21.6 221 230-476 46-294 (1630)
329 2woz_A Kelch repeat and BTB do 96.0 0.77 2.6E-05 41.0 20.9 226 224-473 18-289 (318)
330 2ism_A Putative oxidoreductase 95.9 0.94 3.2E-05 41.2 22.6 238 111-364 31-333 (352)
331 3ott_A Two-component system se 95.8 2 6.8E-05 43.8 34.4 317 113-469 193-543 (758)
332 3sre_A PON1, serum paraoxonase 95.8 1.1 3.7E-05 40.6 21.1 182 261-458 52-286 (355)
333 1xi4_A Clathrin heavy chain; a 95.7 2.9 9.9E-05 45.0 24.5 225 130-429 46-296 (1630)
334 1bpo_A Protein (clathrin); cla 95.6 1.4 4.7E-05 40.7 30.7 274 115-471 29-331 (494)
335 4hfx_A Transcription elongatio 95.5 0.012 4.1E-07 41.0 3.6 65 23-92 13-77 (97)
336 3sbq_A Nitrous-oxide reductase 95.5 0.035 1.2E-06 52.6 7.9 132 326-458 299-454 (638)
337 2uvk_A YJHT; unknown function, 95.0 1.9 6.6E-05 39.0 21.6 51 326-378 286-345 (357)
338 1tl2_A L10, protein (tachylect 93.8 1.8 6E-05 35.9 12.9 100 112-236 42-158 (236)
339 3a9g_A Putative uncharacterize 93.5 4.2 0.00014 36.9 27.1 61 393-457 259-330 (354)
340 3pbp_A Nucleoporin NUP82; beta 93.5 4.6 0.00016 37.2 19.2 146 270-418 31-208 (452)
341 1cru_A Protein (soluble quinop 93.4 0.73 2.5E-05 43.6 11.8 108 346-457 27-162 (454)
342 2g8s_A Glucose/sorbosone dehyd 92.8 5.4 0.00019 36.1 26.6 242 208-456 19-340 (353)
343 1tl2_A L10, protein (tachylect 91.9 0.68 2.3E-05 38.4 7.9 100 347-456 42-152 (236)
344 2g8s_A Glucose/sorbosone dehyd 90.4 3.3 0.00011 37.6 12.2 108 346-457 18-148 (353)
345 2be1_A Serine/threonine-protei 90.0 1.1 3.8E-05 40.2 8.3 193 222-427 10-236 (339)
346 2be1_A Serine/threonine-protei 89.8 1.8 6.3E-05 38.8 9.6 30 403-432 111-140 (339)
347 2zwa_A Leucine carboxyl methyl 89.6 18 0.00063 36.2 20.5 68 221-292 500-579 (695)
348 3a9g_A Putative uncharacterize 89.4 12 0.00041 33.8 24.2 236 111-364 29-330 (354)
349 3das_A Putative oxidoreductase 88.3 14 0.00047 33.2 28.7 239 206-457 31-326 (347)
350 2zwa_A Leucine carboxyl methyl 85.7 22 0.00074 35.7 15.6 144 326-473 413-579 (695)
351 2wg3_C Hedgehog-interacting pr 84.6 16 0.00055 34.4 13.2 106 346-457 14-157 (463)
352 3qhy_B Beta-lactamase inhibito 81.9 25 0.00085 30.5 25.5 224 207-472 24-247 (282)
353 3qhy_B Beta-lactamase inhibito 80.6 28 0.00094 30.2 29.0 221 155-424 25-248 (282)
354 3sbq_A Nitrous-oxide reductase 78.1 37 0.0013 32.7 12.7 77 104-194 316-405 (638)
355 3q6k_A 43.2 kDa salivary prote 74.4 51 0.0017 30.0 18.5 135 316-457 170-342 (381)
356 2wg3_C Hedgehog-interacting pr 72.0 41 0.0014 31.7 11.7 29 208-240 15-44 (463)
357 3das_A Putative oxidoreductase 70.8 59 0.002 29.1 25.9 237 153-408 31-324 (347)
358 3b7f_A Glycosyl hydrolase, BNR 68.0 71 0.0024 29.0 15.4 27 260-287 233-259 (394)
359 4fhn_B Nucleoporin NUP120; pro 67.8 9.4 0.00032 40.9 7.2 37 394-430 239-276 (1139)
360 1cru_A Protein (soluble quinop 66.9 84 0.0029 29.4 30.2 112 154-279 27-163 (454)
361 4gq2_M Nucleoporin NUP120; bet 65.9 1.3E+02 0.0046 31.3 22.9 37 394-430 237-274 (950)
362 3f7f_A Nucleoporin NUP120; nuc 62.1 37 0.0013 33.8 9.4 77 394-473 223-307 (729)
363 4gq2_M Nucleoporin NUP120; bet 61.4 96 0.0033 32.4 13.0 37 260-297 237-273 (950)
364 3vu7_H DNA repair protein REV1 52.9 6.9 0.00024 28.8 2.0 63 4-67 19-105 (124)
365 4a9v_A PHOX; hydrolase, beta-p 45.2 52 0.0018 31.8 7.2 62 393-458 476-550 (592)
366 3zwu_A Alkaline phosphatase PH 43.0 54 0.0019 31.9 7.1 60 395-458 478-550 (592)
367 3s25_A Hypothetical 7-bladed b 40.9 1.8E+02 0.0062 25.3 21.9 228 161-489 21-273 (302)
368 4hvt_A Ritya.17583.B, post-pro 40.8 2.9E+02 0.0099 27.6 21.0 99 368-470 322-429 (711)
369 2d96_A Nuclear factor NF-kappa 38.1 13 0.00043 26.7 1.4 35 14-54 3-37 (109)
370 2dbf_A Nuclear factor NF-kappa 37.2 15 0.0005 25.9 1.6 35 14-54 3-37 (100)
371 4fhn_B Nucleoporin NUP120; pro 36.0 1.2E+02 0.0041 32.5 9.2 34 439-474 238-271 (1139)
372 1wh4_A IRAK4, interleukin-1 re 31.4 33 0.0011 25.4 2.8 34 12-54 10-43 (127)
373 4hvt_A Ritya.17583.B, post-pro 29.9 4.3E+02 0.015 26.4 22.9 96 279-374 318-429 (711)
374 1wmg_A Netrin receptor UNC5H2; 27.3 19 0.00066 25.5 0.9 34 16-54 5-38 (103)
375 2a9i_A IRAK-4, interleukin-1 r 25.9 55 0.0019 23.6 3.1 33 13-54 4-36 (113)
376 3f7f_A Nucleoporin NUP120; nuc 25.2 83 0.0028 31.4 5.1 29 270-298 230-258 (729)
377 1q47_A Semaphorin 3A; beta pro 23.1 4.2E+02 0.014 25.0 9.4 68 394-466 405-487 (495)
378 3b7f_A Glycosyl hydrolase, BNR 21.6 4.4E+02 0.015 23.6 27.0 28 259-286 177-204 (394)
379 3al9_A Plexin-A2; beta-propell 20.4 1.5E+02 0.005 28.5 5.8 68 394-466 401-476 (539)
380 3zwu_A Alkaline phosphatase PH 20.3 2.1E+02 0.007 27.9 6.8 50 113-163 478-540 (592)
381 2kwv_A RAD30 homolog B, DNA po 20.1 76 0.0026 18.3 2.2 26 12-37 13-38 (48)
No 1
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-53 Score=412.98 Aligned_cols=413 Identities=18% Similarity=0.263 Sum_probs=344.2
Q ss_pred CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCcccc--------CCCCCcchhH
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLV--------SGSLPTVRVR 83 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~--------~~~~~~~~~~ 83 (501)
+|....+.+..||.|++.+||+||++++|+++++|||+|+.++.++.+|+++++++...... ........|+
T Consensus 11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk 90 (445)
T 2ovr_B 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK 90 (445)
T ss_dssp CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHH
T ss_pred CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHH
Confidence 45667889999999999999999999999999999999999999999999999876421110 0001235689
Q ss_pred HHHHHHHHHhhhccccCCee-eEEEecCCCC-ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEe
Q 010784 84 EAYLARRIALLQFKFVDPLD-VCFYSVAKPH-DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRL 161 (501)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i-~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~ 161 (501)
..|.+++....+|+.+.... ..+..|...+ +|+.+ ++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|
T Consensus 91 ~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~ 167 (445)
T 2ovr_B 91 SAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQM 167 (445)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEE
T ss_pred HHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEe
Confidence 99999988888898877643 4566676664 55554 5889999999999999999985 788899999999999999
Q ss_pred eccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784 162 FPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL 239 (501)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~ 239 (501)
++ +++++|+.||+|++|| +++.+..+.+|...|.++.|+ ++.+++|+.||.|++||+
T Consensus 168 ~~---------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 168 RD---------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH------EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp ET---------------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEES
T ss_pred cC---------------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec------CCEEEEEeCCCEEEEEEC
Confidence 64 7999999999999999 788889999999999999984 468999999999999999
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.++. ....+.+|...|.++.+ ++.++++|+.||.|++||+++++.+.... .+...+.++.+++..+
T Consensus 227 ~~~~------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l 292 (445)
T 2ovr_B 227 ETGQ------CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHV 292 (445)
T ss_dssp SSCC------EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEE
T ss_pred CCCc------EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEECCCEE
Confidence 9876 47788899999999988 46689999999999999999876543322 3455677777866666
Q ss_pred EEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---cccC
Q 010784 320 YIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---HVGS 394 (501)
Q Consensus 320 ~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h~~~ 394 (501)
+.++. +.|++||+++++.+..+.+|...+.++.+ +++++++|+.|+ |++||+++++.. ..+.+ |...
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~ 364 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL------QTLQGPNKHQSA 364 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE------EEECSTTSCSSC
T ss_pred EEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE------EEEccCCCCCCC
Confidence 66553 58999999999999999999999998887 466999999888 999999987654 66655 8889
Q ss_pred eEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCce----EEEeecc
Q 010784 395 VTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGL----LQFRDFS 470 (501)
Q Consensus 395 v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~----i~~w~~~ 470 (501)
|++++|++ .++++|+.||.|++||+.+++.+..+......++...|.+++|+|++.++++|+ .||. |.+||++
T Consensus 365 v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~--~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 365 VTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEECC
T ss_pred EEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc--cCCCCccEEEEEECC
Confidence 99999976 466677799999999999999988874333346788999999999999999999 5576 9999998
Q ss_pred CCc
Q 010784 471 NAT 473 (501)
Q Consensus 471 ~~~ 473 (501)
...
T Consensus 442 ~~~ 444 (445)
T 2ovr_B 442 VDM 444 (445)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 2
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-50 Score=395.52 Aligned_cols=412 Identities=17% Similarity=0.229 Sum_probs=321.1
Q ss_pred CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCC-chhHHHHHhhhcCccc-------------cCCCC
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYS-DSVWQRLFREQWPQVL-------------VSGSL 77 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~-~~lW~~~~~~~~~~~~-------------~~~~~ 77 (501)
.|....+.|..||.|++++||+||++++|+++++|||.|++++.+ +.||++++.++..... .....
T Consensus 7 ~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
T 3v7d_B 7 KDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLS 86 (464)
T ss_dssp --CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSC
T ss_pred CcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcc
Confidence 456677899999999999999999999999999999999999998 8999999876532100 00111
Q ss_pred CcchhHHHHHHHHHHhhhccccCC--eeeEEEecCCC-CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc
Q 010784 78 PTVRVREAYLARRIALLQFKFVDP--LDVCFYSVAKP-HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA 154 (501)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~ 154 (501)
....++..|.++.....+|..... ....+..|... ++++.++ +.++++|+.|+.|++||+.++ +.+..+.+|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~ 163 (464)
T 3v7d_B 87 QQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINK-KFLLQLSGHDG 163 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-EEEEEECCCSS
T ss_pred cchhhHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCc
Confidence 223356667676666777766554 34566777777 4676665 569999999999999999985 88899999999
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
.|++++|++ ++ +|++|+.||+|++|| +++.+..+.+|...|.+++|++ .+++.++++|+.||
T Consensus 164 ~V~~l~~~~-------------~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 164 GVWALKYAH-------------GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE--YKNIKYIVTGSRDN 227 (464)
T ss_dssp CEEEEEECS-------------TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEE--SSSCEEEEEEETTS
T ss_pred CEEEEEEcC-------------CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEec--CCCCCEEEEEcCCC
Confidence 999999998 55 999999999999999 7888899999999999999974 35678999999999
Q ss_pred cEEEEeccCCCcccc-----------------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784 233 TVRLWSLSSSGKRGQ-----------------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~-----------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 295 (501)
.|++||+.+...... ......+.+|...|.++. + ++.++++|+.||.|++||+++++.+.
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999987653110 012456778999998774 3 56799999999999999999886543
Q ss_pred ceecccceecCCCceeeecCCCeEEE--Ee-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEE
Q 010784 296 SSCCVGMTSVPGVPVDMKCHESMLYI--AS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTW 371 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iw 371 (501)
... .+...+.++.++++...+ ++ ++.|++||+++++.+..+.+|...|.+++++ +.++++++.|+ |++|
T Consensus 305 ~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 305 ILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred Eec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 321 345566777776654333 33 3589999999999999999999999999997 57999999888 9999
Q ss_pred ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
|+.+.+.. ... .|...+..++++++ .++++|+ ||.|++||+.+++.+..+. ..|...|.+++|+ +
T Consensus 378 d~~~~~~~------~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~----~~~~~~v~~v~~~--~ 443 (464)
T 3v7d_B 378 DANDYSRK------FSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI----LKDADQIWSVNFK--G 443 (464)
T ss_dssp ETTTCCEE------EEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT----TTTCSEEEEEEEE--T
T ss_pred ECCCCcee------eee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh----ccCCCcEEEEEec--C
Confidence 99986533 332 35667888899999 8888886 9999999999999988743 4567889999997 4
Q ss_pred cEEEEeecCCCceEEEe
Q 010784 451 CRIVTASYGEPGLLQFR 467 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w 467 (501)
+.+++++. .+|.+.+|
T Consensus 444 ~~l~~~~~-~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVE-KDGQSFLE 459 (464)
T ss_dssp TEEEEEEE-ETTEEEEE
T ss_pred CEEEEEEE-eCCeEEEE
Confidence 44444443 45655444
No 3
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-49 Score=384.90 Aligned_cols=371 Identities=19% Similarity=0.286 Sum_probs=294.2
Q ss_pred CCCCCCcccccccHH----HHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCc---------------cc
Q 010784 12 SPSPSTTAIADLNED----AVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQ---------------VL 72 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e----~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~---------------~~ 72 (501)
.|....+.|..||.| ++.+||+||++++|+++++|||+|+.++.++.||+++|.+++.. .+
T Consensus 3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~ 82 (435)
T 1p22_A 3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYL 82 (435)
T ss_dssp CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGC
T ss_pred ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhh
Confidence 355668899999999 99999999999999999999999999999999999999877421 00
Q ss_pred ----cCC-CCCcchhHHHHHHH-----HHHhhhccccCCeeeEEEec---CCCCceEEeeCCcEEEeecCCeeeEEEEec
Q 010784 73 ----VSG-SLPTVRVREAYLAR-----RIALLQFKFVDPLDVCFYSV---AKPHDHILLDNNDIFSTQGSSIQNIKIDNF 139 (501)
Q Consensus 73 ----~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~ 139 (501)
+.. ......+...+..+ .....+|..+......+..+ ..+|.|+.+ ++.++++|+.|+.|++||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~ 160 (435)
T 1p22_A 83 FKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDK 160 (435)
T ss_dssp C---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEES
T ss_pred hccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeC
Confidence 000 00111222222222 13445677766554444433 334777666 7899999999999999999
Q ss_pred ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeec
Q 010784 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 140 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~ 217 (501)
.++ +....+.+|.+.|++++| ++++|++|+.||+|++|| +++.+..+.+|...|.+++|+
T Consensus 161 ~~~-~~~~~~~~h~~~v~~l~~---------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-- 222 (435)
T 1p22_A 161 NTL-ECKRILTGHTGSVLCLQY---------------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-- 222 (435)
T ss_dssp SSC-CEEEEECCCSSCEEEEEC---------------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--
T ss_pred CCC-eEEEEEcCCCCcEEEEEE---------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--
Confidence 985 788899999999999998 358999999999999999 788889999999999999984
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
+.++++|+.||.|++||+.++.. ......+.+|...|.++++ +++++++|+.||.|++||+++++.
T Consensus 223 ----~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~---- 288 (435)
T 1p22_A 223 ----NGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF---- 288 (435)
T ss_dssp ----TTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE----
T ss_pred ----CCEEEEeeCCCcEEEEeCCCCCC---ceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE----
Confidence 45999999999999999988763 1123667889999999998 456899999999999999987642
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~ 376 (501)
+..+.+|...|.++.+ ++.++++|+.|+ |++||++++
T Consensus 289 ----------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 289 ----------------------------------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ----------------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ----------------------------------------EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 3455678899999998 567999999888 999999987
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc---------cccccccCCCCCCCcceeeeEee
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM---------LANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
+.. ..+.+|...|.++++++ .++++|+.||.|++||+.+++ ++..+ .+|...|.+++|
T Consensus 327 ~~~------~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~- 393 (435)
T 1p22_A 327 ACL------RVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF- 393 (435)
T ss_dssp CEE------EEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE-
T ss_pred CEE------EEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe-
Confidence 654 88899999999999943 567777899999999998766 56666 567889999999
Q ss_pred ccccEEEEeecCCCceEEEeeccCCcc
Q 010784 448 VSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 448 ~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
++++|++|+ .||.|++||+..+..
T Consensus 394 -~~~~l~s~s--~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 394 -DEFQIVSSS--HDDTILIWDFLNDPA 417 (435)
T ss_dssp -CSSCEEECC--SSSEEEEEC------
T ss_pred -CCCEEEEEe--CCCEEEEEECCCCCC
Confidence 888999999 669999999987664
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.6e-47 Score=380.10 Aligned_cols=371 Identities=11% Similarity=0.128 Sum_probs=295.1
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCc---------------
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHE--------------- 166 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~--------------- 166 (501)
...+..|...|++++|+|+|.++|+|+.|+.|+|||+.++. .....+.+|.+.|.+++|+|++.
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 34566788889999999999999999999999999986532 34557889999999999999764
Q ss_pred ----------------CcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE
Q 010784 167 ----------------TSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS 227 (501)
Q Consensus 167 ----------------~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s 227 (501)
..+.++.|+|++. .|++|+.|++|++|| .++++..+.+|...|.+++|+ |++++|++
T Consensus 132 ~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs----pdg~~las 207 (611)
T 1nr0_A 132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN----PDGSLFAS 207 (611)
T ss_dssp EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC----TTSSEEEE
T ss_pred EEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC----CCCCEEEE
Confidence 1345677888886 699999999999999 667788899999999999997 89999999
Q ss_pred eeCCCcEEEEeccCCCccccccceeecc-------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 228 GGEDATVRLWSLSSSGKRGQQALKATLY-------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
|+.|++|++||+.++.. ...+. +|.+.|.+++|+| ++.+|++++.|++|++||+++++.+......
T Consensus 208 ~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp EETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EECCCcEEEEECCCCcE------eeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999988763 44442 7999999999998 7889999999999999999988654433211
Q ss_pred cceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
.........+.+.+..++.+. ++.+++||.++++....+.+|...|.+++|+|++++|++++.|+ |++||+.+++.
T Consensus 281 --~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 281 --TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp --SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred --CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 011222334445555444444 45899999999988888999999999999999999999999999 99999987543
Q ss_pred CCCC-----CC---------------------------------------------------------------------
Q 010784 379 AVKP-----QP--------------------------------------------------------------------- 384 (501)
Q Consensus 379 ~~~~-----~~--------------------------------------------------------------------- 384 (501)
.... ..
T Consensus 359 ~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 359 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 1000 00
Q ss_pred ---cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 385 ---MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 385 ---~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
+..+ .|...+.+++|+|+ +++++|+.|++|++||+.+++...... .+|...|++++|+|||++|++++ .
T Consensus 439 ~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~----~~h~~~v~~v~fspdg~~las~s--~ 511 (611)
T 1nr0_A 439 HGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT----IVHPAEITSVAFSNNGAFLVATD--Q 511 (611)
T ss_dssp TTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE----EECSSCEEEEEECTTSSEEEEEE--T
T ss_pred CCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec----cCCCCceEEEEECCCCCEEEEEc--C
Confidence 0000 12345789999999 999999999999999998754321111 35678899999999999999999 6
Q ss_pred CceEEEeeccC------------------------CccceeecCCCCceeeecccCC
Q 010784 461 PGLLQFRDFSN------------------------ATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 461 ~g~i~~w~~~~------------------------~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
|+.|++|++.. ++..+++++.|+++++|+++..
T Consensus 512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 69999999754 2345789999999999998754
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-47 Score=363.93 Aligned_cols=293 Identities=19% Similarity=0.298 Sum_probs=262.9
Q ss_pred ccccCCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCC
Q 010784 96 FKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQ 175 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~ 175 (501)
|....+....+..|..+|++++|+|++.++++|+.|+.|++||+.++ +...++.+|.+.|++++|+|
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~------------ 160 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDH------------ 160 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECT------------
T ss_pred cccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcC------------
Confidence 43444445677889999999999999999999999999999999985 88899999999999999999
Q ss_pred CcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 176 RTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 176 ~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
++++|++|+.||+|++|| .++++..+.+|...|.+++|+ +++++|++|+.|++|++||+.++. ++..
T Consensus 161 -~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~----p~~~~l~s~s~D~~i~~wd~~~~~------~~~~ 229 (410)
T 1vyh_C 161 -SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----PNGDHIVSASRDKTIKMWEVQTGY------CVKT 229 (410)
T ss_dssp -TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC----SSSSEEEEEETTSEEEEEETTTCC------EEEE
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe----CCCCEEEEEeCCCeEEEEECCCCc------EEEE
Confidence 889999999999999999 677889999999999999997 789999999999999999999876 4788
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
+.+|...|.++.+++ ++.+|++|+.|+.|++||+++++.
T Consensus 230 ~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~---------------------------------------- 268 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC---------------------------------------- 268 (410)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE----------------------------------------
T ss_pred EeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce----------------------------------------
Confidence 899999999999997 788999999999999999987642
Q ss_pred CCceEeeeccCCCcEEEEEEcCC--------------------CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc
Q 010784 334 TMQKVMTPAICKPILHSFSIMPS--------------------KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV 392 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~ 392 (501)
...+..|...|.+++|+|+ +.+|++|+.|+ |++||+++++.. ..+.+|.
T Consensus 269 ----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~------~~~~~h~ 338 (410)
T 1vyh_C 269 ----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL------MTLVGHD 338 (410)
T ss_dssp ----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE------EEEECCS
T ss_pred ----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE------EEEECCC
Confidence 2345678888999999986 67899999999 999999987654 8889999
Q ss_pred cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
..|++++|+|+ +++++|+.||.|++||+.+++++.++ .+|...|++++|+|++.+|++|+ .||.|++|++.
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~sgs--~D~~i~vW~~r 410 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-----NAHEHFVTSLDFHKTAPYVVTGS--VDQTVKVWECR 410 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-----ECCSSCEEEEEECSSSSCEEEEE--TTSEEEEEC--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-----cCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Confidence 99999999999 88889999999999999999999998 56788999999999999999999 66999999863
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-45 Score=371.39 Aligned_cols=352 Identities=14% Similarity=0.219 Sum_probs=273.4
Q ss_pred EEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 106 FYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
+..|...|++++|+|++. .+++|+.|+.|++||..++ +...++.+|.+.|++++|+| ++++|++|
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-------------dg~~las~ 208 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-------------DGSLFAST 208 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-------------TSSEEEEE
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECC-------------CCCEEEEE
Confidence 456777899999999986 5999999999999998874 77889999999999999999 89999999
Q ss_pred eCCCceEEec--CCceeeecc-------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc--------
Q 010784 185 SCDHSIRLWW--KGSCQRCFK-------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ-------- 247 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~-------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------- 247 (501)
+.||+|++|| .++.+..+. +|.+.|.+++|+ |++++|++|+.|++|++||+.+++....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s----pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS----PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 9999999999 677777763 799999999997 8999999999999999999987542110
Q ss_pred -----------------------------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 248 -----------------------------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 248 -----------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
......+.+|...|++++|+| ++++|++++.|+.|++||+.+++......
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~ 363 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFP 363 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence 012345568999999999998 88899999999999999999876533210
Q ss_pred cccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCc----------------------------------------
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQ---------------------------------------- 336 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~---------------------------------------- 336 (501)
..+...+.++.+.++..+++. ++.+++|++....
T Consensus 364 ----~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 364 ----DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ----CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred ----cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 112233333333333222221 2345555543211
Q ss_pred -eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784 337 -KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 337 -~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
.+..+. |...+.+++|+|+|++|++|+.|+ |++||+...... .+.. .+|...|++++|+|+ ++|++++.|+
T Consensus 440 ~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~----~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 440 GKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS----EVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp TEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE----EEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred Cceeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee----eeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 122222 567789999999999999999999 999999875321 1233 578999999999999 9999999999
Q ss_pred cEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc------------------
Q 010784 414 RINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC------------------ 474 (501)
Q Consensus 414 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~------------------ 474 (501)
+|++|++.+ ++++.... ...|...|.+++|+|||++|++|+ .|+.|++|++..+..
T Consensus 514 ~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs--~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~ 588 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGS--LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588 (611)
T ss_dssp CEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred CEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEE--CCCcEEEEECCCcccccchhhccCcccCeeEEE
Confidence 999999987 55544311 134888999999999999999999 669999999764321
Q ss_pred -----ceeecCCCCceeeeccc
Q 010784 475 -----PVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 475 -----~~~s~~~d~~~~~w~~~ 491 (501)
.+++++.|+++++|++.
T Consensus 589 fs~d~~l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 589 WLNETTIVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTEEEEEETTSCEEEEECC
T ss_pred EcCCCEEEEecCCCCEEEEecc
Confidence 15688999999999873
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.4e-45 Score=334.31 Aligned_cols=291 Identities=18% Similarity=0.264 Sum_probs=253.7
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
....+..|...|++++|+|++.++++|+.|+.|++||+.++ ..+..+.+|...|.+++|+| ++++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~-------------~~~~l 70 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIA-------------RKNWI 70 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEG-------------GGTEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeC-------------CCCEE
Confidence 34567888999999999999999999999999999999985 77889999999999999999 89999
Q ss_pred EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
++|+.|++|++|| +++.+..+.+|...|.+++|+ +++++|++|+.||+|++||+.++.. +...+.+|..
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~sgs~D~~v~lWd~~~~~~-----~~~~~~~h~~ 141 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH----PTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEH 141 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSCEEEEEGGGTTE-----EEEEECCCCS
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc----CCCCEEEEECCCCeEEEEECCCCcc-----hhhhhcccCC
Confidence 9999999999999 788889999999999999997 8899999999999999999988754 5677889999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.|.+++|+|.++.+|++|+.|+.|++||+++..... .
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-------------------------------------------~ 178 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-------------------------------------------T 178 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-------------------------------------------E
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-------------------------------------------e
Confidence 999999998778899999999999999998764311 1
Q ss_pred eeccCCCcEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcE
Q 010784 340 TPAICKPILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRI 415 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i 415 (501)
....|...+..+.++| ++.+|++|+.|+ |++||+++++.+ .++.+|...|.+++|+|+ .++++|+.||+|
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~------~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (304)
T ss_dssp EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc------eeeCCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence 1223567788899887 678999999999 999999987654 889999999999999999 999999999999
Q ss_pred EEEeCCCcccccccccCCCCCCCcceeeeEeecccc--EEEEeecCCCceEEEeeccCC
Q 010784 416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC--RIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++||+.+++++.++ ..|...+.+++|+|++. ++++|+ + ..+.+|++..+
T Consensus 253 ~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~asg~--~-~g~~~~~~~~~ 303 (304)
T 2ynn_A 253 KIWNSSTYKVEKTL-----NVGLERSWCIATHPTGRKNYIASGF--D-NGFTVLSLGND 303 (304)
T ss_dssp EEEETTTCCEEEEE-----CCSSSSEEEEEECTTCGGGCEEEEE--T-TEEEEEECC--
T ss_pred EEEECCCCceeeec-----cCCCccEEEEEECCCCCceEEEEec--C-CceEEEEeccC
Confidence 99999999999999 45677899999999875 577775 3 45777776653
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-45 Score=338.72 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=252.3
Q ss_pred EecCCCCceEEeeCC----cEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 107 YSVAKPHDHILLDNN----DIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~----~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
..|..+|.+++|+++ +.++++|+.|++|+||++..+. .....+.+|...|.+++|++ ++.++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-------------~~~~l 95 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-------------TLPIA 95 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-------------SSSEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-------------CCCEE
Confidence 457788999999874 6799999999999999987642 34557899999999999999 78999
Q ss_pred EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
++++.|++|++|| +++.+..+..|...+.+++|+ |++++|++|+.||.|++|++.++.. ...+..|..
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~g~~dg~v~i~~~~~~~~------~~~~~~~~~ 165 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS----PDSQYLATGTHVGKVNIFGVESGKK------EYSLDTRGK 165 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC----TTSSEEEEECTTSEEEEEETTTCSE------EEEEECSSS
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC----CCCCEEEEEcCCCcEEEEEcCCCce------eEEecCCCc
Confidence 9999999999999 778888899999999999997 8999999999999999999998763 667788999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.|.+++|+| ++++|++|+.||.|++||+++++ .+.
T Consensus 166 ~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~--------------------------------------------~~~ 200 (321)
T 3ow8_A 166 FILSIAYSP-DGKYLASGAIDGIINIFDIATGK--------------------------------------------LLH 200 (321)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTE--------------------------------------------EEE
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc--------------------------------------------EEE
Confidence 999999998 78899999999999999998763 334
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.+.+|...|.+++|+|++++|++|+.|+ |++||+++++.. ..+.+|...|.+++|+|+ .++++++.|++|++
T Consensus 201 ~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i 274 (321)
T 3ow8_A 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274 (321)
T ss_dssp EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 5667899999999999999999999999 999999986544 788999999999999999 88999999999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
||+.+++++.++ .+|...|.+++|+|+|++|++++ .||.|++||..
T Consensus 275 wd~~~~~~~~~~-----~~h~~~v~~v~~s~~g~~l~s~~--~d~~i~vwd~p 320 (321)
T 3ow8_A 275 WDVGTRTCVHTF-----FDHQDQVWGVKYNGNGSKIVSVG--DDQEIHIYDCP 320 (321)
T ss_dssp EETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEE--TTCCEEEEECC
T ss_pred EeCCCCEEEEEE-----cCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEeCC
Confidence 999999999999 56788999999999999999999 66999999963
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.2e-45 Score=364.34 Aligned_cols=341 Identities=19% Similarity=0.297 Sum_probs=292.5
Q ss_pred CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
......+..+...|.+++|+|++.++++|+.|+.+++|+.. .+.+..+.+|...|++++|+| +++
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~-------------d~~ 275 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRP-------------DGQ 275 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECT-------------TSS
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcC-------------CCC
Confidence 33445566778889999999999999999999999999976 477888999999999999999 899
Q ss_pred EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 180 VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
.|++++.|+.|++|| .++.+..+.+|...|.+++|+ +++++|++++.||.|++||+.... ...+.+|.
T Consensus 276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~t~~~d~~i~~w~~~~~~-------~~~~~~~~ 344 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS----PDGQTIASASDDKTVKLWNRNGQH-------LQTLTGHS 344 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTSCE-------EEEECCCS
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCe-------eEEEeCCC
Confidence 999999999999999 788888999999999999997 899999999999999999987643 56778899
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCC
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTM 335 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~ 335 (501)
..|.+++|+| ++.++++++.|+.|++||.. ++.+.. ...+...+.++.++++..++++ ++.|++||. ++
T Consensus 345 ~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~~~~~~-----~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~ 416 (577)
T 2ymu_A 345 SSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 416 (577)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEETT-CCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred CCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-CCEEEE-----ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 9999999998 78899999999999999964 332221 1134556677777766544443 348999995 56
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
+.+..+.+|...|.+++|+|++++|++++.|+ |++||... + .+..+.+|...|++++|+|+ +++++++.|+
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~------~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C------EEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 77888999999999999999999999999999 99999643 2 34788899999999999999 9999999999
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec--------------------cCCc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF--------------------SNAT 473 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~--------------------~~~~ 473 (501)
.|++||. +++++..+ .+|...|++++|+|+|++|++++ .||.|++||. .+++
T Consensus 490 ~i~iw~~-~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEEEEET-TSCEEEEE-----ECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEEcC-CCCEEEEE-----eCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 9999995 68888888 56788999999999999999999 6699999993 3456
Q ss_pred cceeecCCCCceeeec
Q 010784 474 CPVLKHEVQNDSKFWG 489 (501)
Q Consensus 474 ~~~~s~~~d~~~~~w~ 489 (501)
+.+++++.|+++++|+
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 6788999999999996
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-44 Score=334.41 Aligned_cols=283 Identities=16% Similarity=0.236 Sum_probs=249.7
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
...+..|..+|++++|++++.++++|+.|+.|++||..++ +....+..|...|.+++|+| ++++|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l~ 113 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP-------------SGNYVA 113 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSSSCEEEEEECT-------------TSSEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-CcceEeecCCccEEEEEECC-------------CCCEEE
Confidence 4567778899999999999999999999999999999985 77888899999999999999 899999
Q ss_pred EeeCCCceEEec--CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 183 TSSCDHSIRLWW--KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 183 s~~~dg~i~vwd--~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+|+.|+.|++|| .+ .....+.+|.+.|.++.|+ +++ .+++++.|+.|++||+.++. ....+.+
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~-~l~s~s~d~~i~~wd~~~~~------~~~~~~~ 182 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL----DDN-QIVTSSGDTTCALWDIETGQ------QTTTFTG 182 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE----ETT-EEEEEETTSCEEEEETTTTE------EEEEECC
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC----CCC-cEEEEECCCcEEEEECCCCc------EEEEEcC
Confidence 999999999998 22 3456678999999999997 444 58999999999999999876 4778899
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|...|.+++|+| ++.++++|+.|+.|++||+++++
T Consensus 183 h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~-------------------------------------------- 217 (340)
T 1got_B 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM-------------------------------------------- 217 (340)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCS--------------------------------------------
T ss_pred CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCe--------------------------------------------
Confidence 999999999998 78899999999999999998763
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEecCC
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
.+..+.+|...|.+++|+|++++|++|+.|+ |++||+++.+.. ..+. .+...|++++|+|+ +++++|+.|
T Consensus 218 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------EEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE------EEEccCCcccceEEEEECCCCCEEEEECCC
Confidence 2345667899999999999999999999998 999999986543 3332 33457999999999 999999999
Q ss_pred CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|.|++||+.+++.+..+ .+|...|.+++|+|+|++|++|+ .|+.|++||
T Consensus 292 ~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s--~D~~i~iWd 340 (340)
T 1got_B 292 FNCNVWDALKADRAGVL-----AGHDNRVSCLGVTDDGMAVATGS--WDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred CeEEEEEcccCcEeeEe-----ecCCCcEEEEEEcCCCCEEEEEc--CCccEEecC
Confidence 99999999999998888 57788999999999999999999 669999997
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.7e-44 Score=336.03 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=237.2
Q ss_pred EecCCCCceEEeeCCcEEEeecCC------eeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
..|...|++++|+|||.+||+|+. |+.+++|+..++. .......+|...|++++|+| +
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-------------d 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-------------E 105 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-------------T
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-------------C
Confidence 357778999999999999999987 7889999987642 23344567999999999999 5
Q ss_pred CcEEEEeeCCCceEEec--CCceee----eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQR----CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~----~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
+. +++++.||+|+||| +++... ...+|...|++++|+ +++++|++|+.||.|++||+.++. .+
T Consensus 106 ~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s----pdg~~l~sgs~dg~v~iwd~~~~~------~~ 174 (357)
T 4g56_B 106 KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF----SDGTQAVSGGKDFSVKVWDLSQKA------VL 174 (357)
T ss_dssp TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC----SSSSEEEEEETTSCEEEEETTTTE------EE
T ss_pred CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC----CCCCEEEEEeCCCeEEEEECCCCc------EE
Confidence 54 56678899999999 443332 344799999999997 899999999999999999999876 57
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
..+.+|...|++++|++.+..++++++.||.|++||+++++....
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~----------------------------------- 219 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR----------------------------------- 219 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-----------------------------------
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-----------------------------------
Confidence 888999999999999986667899999999999999998754322
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEE
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVT 407 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~ 407 (501)
.....+...+.+++|+|+ +.+|++|+.|+ |++||+++++.. ..+.+|...|++++|+|+ ++|+
T Consensus 220 -------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~------~~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 220 -------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA------QTSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp -------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC------EEECCCSSCEEEEEECSSSSCCEE
T ss_pred -------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe------EEEeccceeEEEEEEcCCCCCEEE
Confidence 122345778999999997 67899999888 999999987654 888999999999999997 7899
Q ss_pred EecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeeccCCcc
Q 010784 408 GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+|+.||+|+|||+++++++..+ +|...|++++|+| ++++|++++ .||.|++|++....+
T Consensus 287 sgs~D~~i~iwd~~~~~~~~~~------~H~~~V~~vafsP~d~~~l~s~s--~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEVFRDL------SHRDFVTGVAWSPLDHSKFTTVG--WDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEETTSCEEEECTTSCEEEEEC------CCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECC----
T ss_pred EEeCCCEEEEEECCCCcEeEEC------CCCCCEEEEEEeCCCCCEEEEEc--CCCeEEEEECCCCCc
Confidence 9999999999999999887665 5788999999998 899999999 669999999976544
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=331.54 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=251.5
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
....+..|..+|++++|+|++.++++|+.|+.|++||..++ +....+..|...|.+++|+| ++.+|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp-------------~g~~l 121 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAP-------------SGCAI 121 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCEEEECT-------------TSSEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CcceEEecCCCCEEEEEECC-------------CCCEE
Confidence 34567789999999999999999999999999999999885 67778889999999999999 89999
Q ss_pred EEeeCCCceEEec-C-------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 182 VTSSCDHSIRLWW-K-------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~-------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
++|+.|+.+++|+ . ......+.+|...|.+++|+ +++..|++|+.||+|++||+.++. ++..
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~t~s~D~~v~lwd~~~~~------~~~~ 191 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT----NSDMQILTASGDGTCALWDVESGQ------LLQS 191 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC----SSSSEEEEEETTSEEEEEETTTCC------EEEE
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe----CCCCEEEEEeCCCcEEEEeCCCCe------EEEE
Confidence 9999999999997 1 12345667899999999997 788999999999999999999876 5788
Q ss_pred ccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 254 LYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
+.+|...|.+++++|. ++++|++|+.||.|++||+++++
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~---------------------------------------- 231 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---------------------------------------- 231 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence 8999999999999875 46899999999999999998764
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEE
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~ 408 (501)
.+..+.+|...|.+++|+|++.+|++|+.|+ |++||++..+.. ..+. .+...+.+++|+|+ .++++
T Consensus 232 ----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 232 ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV------AIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------EEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE------EEEcCCCcccceeEEEEeCCCCEEEE
Confidence 2345667899999999999999999999999 999999986543 3333 23457899999999 99999
Q ss_pred ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 409 GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 409 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|+.|+.|++||+.+++.+..+ .+|...|.+++|+|+|++|++|+ .|+.|++|+
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l-----~~h~~~v~~l~~spdg~~l~sgs--~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSIL-----FGHENRVSTLRVSPDGTAFCSGS--WDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEE-----ECCCCcEEEEEECCCCCEEEEEc--CCCCEEecC
Confidence 999999999999999988888 57888999999999999999999 669999996
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-44 Score=332.22 Aligned_cols=285 Identities=13% Similarity=0.130 Sum_probs=229.8
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc----------cccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
++..|++++|+|||.++++++ |+++++||.... .........|...|++++|+| +
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------d- 93 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-------------E- 93 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-------------T-
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-------------C-
Confidence 345589999999999999887 667777763210 112222334677899999998 5
Q ss_pred cEEEEeeCCCceEEec--CCceeee----ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRC----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA 252 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~----~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 252 (501)
+.|++|+.||+|+||| +++.+.. +.+|.+.|++++|+ +++++|++|+.||+|++||+.++. ++.
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s----pdg~~l~sgs~d~~i~iwd~~~~~------~~~ 163 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL----SSGTQAVSGSKDICIKVWDLAQQV------VLS 163 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEE
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC----CCCCEEEEEeCCCeEEEEECCCCc------EEE
Confidence 5788999999999999 5554433 45899999999997 899999999999999999999876 588
Q ss_pred eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
.+.+|...|.+++|++.+..+|++++.|+.|++||+++++.....
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------- 208 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI----------------------------------- 208 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-----------------------------------
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-----------------------------------
Confidence 899999999999999866678999999999999999987543221
Q ss_pred CCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG 408 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~ 408 (501)
....+...+.+++|+|+ ++++++|+.|+ |++||+++++.+ .++.+|...|++++|+|+ ++|++
T Consensus 209 -------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 209 -------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp -------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEE
T ss_pred -------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEE
Confidence 11234667899999995 67899999888 999999987654 889999999999999998 68999
Q ss_pred ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784 409 GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 409 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
|+.|++|+|||+.+++++. + .+|...|++++|+|+++ +|++++ .|+.|++|++.....
T Consensus 276 gs~D~~i~vwd~~~~~~~~-~-----~~H~~~V~~v~~sp~~~~llas~s--~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLSELFR-S-----QAHRDFVRDATWSPLNHSLLTTVG--WDHQVVHHVVPTEPL 334 (344)
T ss_dssp EETTSCEEEECTTCCEEEE-E-----CCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECCC---
T ss_pred EeCCCeEEEEECCCCcEEE-E-----cCCCCCEEEEEEeCCCCeEEEEEc--CCCeEEEEECCCCCC
Confidence 9999999999999887653 4 46889999999999986 567888 669999999986543
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.9e-43 Score=351.42 Aligned_cols=340 Identities=19% Similarity=0.288 Sum_probs=291.5
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
......+...+.++.+++++.++++|+.|+.+++|+.. .+.+..+.+|...|.+++|+| ++.+|+
T Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~-------------dg~~l~ 237 (577)
T 2ymu_A 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSP-------------DGQTIA 237 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECT-------------TSSCEE
T ss_pred eeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECC-------------CCCEEE
Confidence 34455567779999999999999999999999999975 477888999999999999999 899999
Q ss_pred EeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 183 TSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 183 s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
+++.||.|++|| .++.+..+.+|...|.+++|+ ++++.|++++.|+.|++||.... ....+.+|...|
T Consensus 238 ~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~----~d~~~l~~~~~d~~i~~w~~~~~-------~~~~~~~h~~~v 306 (577)
T 2ymu_A 238 SASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR----PDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSV 306 (577)
T ss_dssp EEETTSCEEEECTTSCEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTSC-------EEEEECCCSSCE
T ss_pred EEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEc----CCCCEEEEEeCCCEEEEEeCCCc-------EEEEEecCCCCe
Confidence 999999999999 788889999999999999997 89999999999999999997543 467788999999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceE
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKV 338 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~ 338 (501)
.+++|+| ++..+++++.|+.|++||....... ....+...+.++.++++...++++ +.+++||. +++.+
T Consensus 307 ~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~ 378 (577)
T 2ymu_A 307 WGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQ------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 378 (577)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTSCEEE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEE
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeE------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 9999998 7889999999999999998765321 111345566677777765555443 48999995 66788
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
..+..|...|.+++|+|++++|++++.|+ |++||.. + +.+..+.+|...|++++|+|+ +++++++.|+.|+
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 88899999999999999999999999998 9999954 2 234788899999999999999 8999999999999
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec--------------------cCCccce
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF--------------------SNATCPV 476 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~--------------------~~~~~~~ 476 (501)
+||. +++.+..+ .+|...|.+++|+|++++|++++ .|+.|++|+. ++++..+
T Consensus 452 ~w~~-~~~~~~~~-----~~~~~~v~~~~~spd~~~las~~--~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 452 LWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EEET-TSCEEEEE-----ECCSSCEEEEEECTTSCEEEEEE--TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEEC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 9996 56777777 56788999999999999999999 6699999983 3456678
Q ss_pred eecCCCCceeeeccc
Q 010784 477 LKHEVQNDSKFWGPQ 491 (501)
Q Consensus 477 ~s~~~d~~~~~w~~~ 491 (501)
++++.|+.+++|+..
T Consensus 524 ~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 524 ASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEETTSEEEEECTT
T ss_pred EEEECcCEEEEEeCC
Confidence 899999999999853
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-44 Score=339.72 Aligned_cols=296 Identities=16% Similarity=0.212 Sum_probs=251.3
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+..|..+|++++|+|++.++++|+.|+.|+|||..++ +....+.+|...|.+++|+| ++++|++
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~-------------~g~~las 125 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-QKTHAIKLHCPWVMECAFAP-------------NGQSVAC 125 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECCCTTCCCCEECT-------------TSSEEEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ccceEEecCCCCEEEEEECC-------------CCCEEEE
Confidence 456778889999999999999999999999999999985 77888999999999999999 8999999
Q ss_pred eeCCCceEEec-CC--------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 184 SSCDHSIRLWW-KG--------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 184 ~~~dg~i~vwd-~~--------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
|+.|+.|++|| .. .....+.+|.+.|.++.|+| ..+..|++|+.|++|++||+.++.. +..+
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~D~~i~~wd~~~~~~------~~~~ 196 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP---DQETRLITGSGDQTCVLWDVTTGQR------ISIF 196 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECTTSCEEEECTTTCCE------EEEE
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec---CCCCEEEEECCCCcEEEEEcCCCcE------EEEe
Confidence 99999999998 21 23456789999999999972 3456899999999999999998763 4333
Q ss_pred -----cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 255 -----YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 255 -----~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
.+|...|.++.+++.++++|++|+.|+.|++||++...
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~------------------------------------- 239 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS------------------------------------- 239 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-------------------------------------
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-------------------------------------
Confidence 67999999999987788899999999999999997432
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-------cccCeEEEEec
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-------HVGSVTQLHMD 401 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~ 401 (501)
+.+..+.+|.+.|.+++|+|++++|++|+.|+ |++||+++++.. ..+.. +...|++++|+
T Consensus 240 ------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 240 ------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL------QVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE------EEECCCCSSSCCSSCSCSEEEEC
T ss_pred ------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE------EEecccccccccccCceEEEEEC
Confidence 12345677999999999999999999999999 999999987653 33332 23358999999
Q ss_pred CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
|+ +++++|+.||.|++||+.+++.+..+... ..+|...|.+++|+|+|++|++|+ .|+.|++|++....+
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs--~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QNSHEGRISCLGLSSDGSALCTGS--WDKNLKIWAFSGHRK 378 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCCEEEEECCS-CSSCCCCCCEEEECSSSSEEEEEC--TTSCEEEEECCSSSS
T ss_pred CCCCEEEEEECCCCEEEEECCCCceEEEEecc-cCCCCCceEEEEECCCCCEEEEee--CCCCEEEEecCCCcc
Confidence 99 99999999999999999988877666322 146888999999999999999999 669999999986543
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-43 Score=328.05 Aligned_cols=306 Identities=15% Similarity=0.211 Sum_probs=245.6
Q ss_pred EEEecCC-CCceEEeeCCcEEEeecCCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 105 CFYSVAK-PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 105 ~~~~~~~-~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
.+..|+. .+.+++|+|+|.+||+|+.|+.|+||+..++... .....+|.+.|++++|+| ++++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l 76 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-------------CGNYL 76 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-------------TSSEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-------------CCCEE
Confidence 4445666 7999999999999999999999999999875222 223478999999999999 89999
Q ss_pred EEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 182 VTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
++|+.|++|++|| .+ .++..+.+|...|.+++|+ +++++|++|+.|++|++||+.++.. ..++..+.+|
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s----p~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h 149 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA----PSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSH 149 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCC
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe----CCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCc
Confidence 9999999999998 33 4577889999999999997 8999999999999999999987642 2245678899
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
...|.+++|+| ++.+|++|+.|+.|++||.++++. ..
T Consensus 150 ~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~------------------------------------------~~ 186 (345)
T 3fm0_A 150 TQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDW------------------------------------------VC 186 (345)
T ss_dssp CSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEE------------------------------------------EE
T ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCE------------------------------------------EE
Confidence 99999999998 788999999999999999876531 12
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC---------CCCcccccC-cccCeEEEEecCC-eE
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK---------PQPMAELDG-HVGSVTQLHMDPY-KI 405 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~---------~~~~~~~~~-h~~~v~~l~~~~~-~~ 405 (501)
...+.+|...|.+++|+|++++|++|+.|+ |++||......... ..++..+.+ |...|++++|+|+ ..
T Consensus 187 ~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 266 (345)
T 3fm0_A 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence 345678999999999999999999999999 99999754332100 011233443 7889999999999 88
Q ss_pred EEEecCCCcEEEEeCCCcccc----cccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCCccc
Q 010784 406 VTGGRDDLRINIWETDTGMLA----NSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
+++++.|+.|++|+...+... ..+..+...+|...|++++|+|++ .+|++|+ .||.|++|++.....+
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s--~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE--TTSCEEEEEECC----
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC--CCCcEEEEEecCCCCc
Confidence 888889999999998765321 122222235788999999999998 4999999 6699999999887654
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.9e-43 Score=322.47 Aligned_cols=292 Identities=16% Similarity=0.256 Sum_probs=248.3
Q ss_pred eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccc----cccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
...+..|..+|+++++++++ .++++|+.|+.|++|++... ...+..+.+|...|++++|+| +
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------d 76 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-------------D 76 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-------------T
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-------------C
Confidence 34567788999999999865 89999999999999998743 235678899999999999999 8
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+++|++|+.||+|++|| +++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++.. .+..+.
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s~D~~i~vwd~~~~-------~~~~~~ 145 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID----KKASMIISGSRDKTIKVWTIKGQ-------CLATLL 145 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSCEEEEEETTSCEEEEETTSC-------EEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc----CCCCEEEEEeCCCeEEEEECCCC-------eEEEEe
Confidence 99999999999999999 788889999999999999997 89999999999999999999753 467888
Q ss_pred CCCCceeEEEEeec-----CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784 256 GHEKPIKLMSVAGH-----KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI 330 (501)
Q Consensus 256 ~~~~~v~~l~~~~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (501)
+|...|.++.+.|. ++..+++++.|+.|++||+++.+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------------------------------------- 187 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-------------------------------------- 187 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--------------------------------------
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--------------------------------------
Confidence 99999999999874 34489999999999999998753
Q ss_pred EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784 331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~ 408 (501)
....+.+|...|.+++|+|++++|++|+.|+ |++||+.+++.. ..+.. ...|.+++|+|+ .++++
T Consensus 188 ------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 188 ------IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM------YTLSA-QDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp ------EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEEC-CSCEEEEEECSSSSEEEE
T ss_pred ------hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecC-CCcEEEEEEcCCCCEEEE
Confidence 2345667999999999999999999999998 999999987654 66654 468999999999 88888
Q ss_pred ecCCCcEEEEeCCCcccccccccCC---CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 409 GRDDLRINIWETDTGMLANSLLCNY---PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 409 gs~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++ ++.+++|++..+..+..+..+. ...+...+.+++|+|||++|++|+ .||.|++|++.+.
T Consensus 255 ~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 255 AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQVMTA 318 (319)
T ss_dssp EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEEC
T ss_pred Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEEEeec
Confidence 74 5569999999877766653221 123466789999999999999999 6699999998753
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-42 Score=319.00 Aligned_cols=292 Identities=20% Similarity=0.312 Sum_probs=253.4
Q ss_pred CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
......+..|..+|++++|+|++.++++|+.|+.+++|+..++ +....+.+|...|.+++|+| +++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~~ 78 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSS-------------DSN 78 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSS
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccCCCceEEEEEcC-------------CCC
Confidence 3445667788899999999999999999999999999999885 77888999999999999999 899
Q ss_pred EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 180 VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+|++|+.||.|++|| +++.+..+.+|...|.+++|+ +++++|++|+.||.|++||+.++. ....+..|
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~ 148 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----PQSNLIVSGSFDESVRIWDVKTGK------CLKTLPAH 148 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSCEEEEETTTCC------EEEEECCC
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----CCCCEEEEEeCCCcEEEEECCCCE------EEEEecCC
Confidence 999999999999999 778888999999999999997 889999999999999999999876 47788899
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
..+|.+++|+| ++.+|++++.||.|++||+++++.+..
T Consensus 149 ~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~----------------------------------------- 186 (312)
T 4ery_A 149 SDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKT----------------------------------------- 186 (312)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------
T ss_pred CCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeE-----------------------------------------
Confidence 99999999997 788999999999999999987743211
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE--EEec-CC-eEEEEecCC
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ--LHMD-PY-KIVTGGRDD 412 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~-~~-~~l~~gs~d 412 (501)
....+...+..++|+|++++|++++.|+ |++||+++++.. ..+.+|...+.+ ..++ ++ .++++|+.|
T Consensus 187 --~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 187 --LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL------KTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp --ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE------EEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred --EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE------EEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 1123567789999999999999999888 999999987654 677777654433 2333 44 889999999
Q ss_pred CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
|.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.++|+.|++|+..
T Consensus 259 g~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQTKEIVQKL-----QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCchhhhhh-----hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999998 577889999999999999999986567999999864
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-42 Score=331.58 Aligned_cols=266 Identities=25% Similarity=0.382 Sum_probs=238.2
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
.....+.+|.++|++++|+| ++.+|++|+.||+|+||| +++....+.+|...|.+++|+ ++
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p-------------~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~----~~ 161 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHP-------------VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----HS 161 (410)
T ss_dssp SCSCEEECCSSCEEEEEECS-------------SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC----TT
T ss_pred CceEeecccCCcEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc----CC
Confidence 34567889999999999999 889999999999999999 778889999999999999997 88
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+++|++|+.||+|++||+.+.. ++..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~------~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~--------- 225 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFE------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGY--------- 225 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSC------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCC---------
T ss_pred CCEEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc---------
Confidence 9999999999999999998876 5788899999999999998 78899999999999999998763
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.+..+.+|...|.++.++|++.++++|+.|+ |++||+++++..
T Consensus 226 -----------------------------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~- 269 (410)
T 1vyh_C 226 -----------------------------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK- 269 (410)
T ss_dssp -----------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-
T ss_pred -----------------------------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-
Confidence 2345667899999999999999999999999 999999986654
Q ss_pred CCCCcccccCcccCeEEEEecCC---------------------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784 381 KPQPMAELDGHVGSVTQLHMDPY---------------------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 381 ~~~~~~~~~~h~~~v~~l~~~~~---------------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 439 (501)
..+.+|...|.+++|+|+ .++++|+.|+.|++||+.+++++.++ .+|..
T Consensus 270 -----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----~~h~~ 339 (410)
T 1vyh_C 270 -----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDN 339 (410)
T ss_dssp -----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSS
T ss_pred -----eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-----ECCCC
Confidence 788899999999999984 47889999999999999999999998 56788
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccC---------------------CccceeecCCCCceeeecc
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~ 490 (501)
.|.+++|+|+|++|++|+ .||.|++||+.. ....+++++.|+++++|++
T Consensus 340 ~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999 669999999653 3345789999999999986
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-42 Score=320.68 Aligned_cols=296 Identities=19% Similarity=0.285 Sum_probs=241.6
Q ss_pred eeEEEecCCCCceEEe-----eC-CcEEEeecCCeeeEEEEecccc------cccceecccCCcceeEEEeeccCcCccc
Q 010784 103 DVCFYSVAKPHDHILL-----DN-NDIFSTQGSSIQNIKIDNFLSE------SYYRATLSDHKARITCMRLFPLHETSLF 170 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~-----~~-~~~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~h~~~V~~~~~~~~~~~~~~ 170 (501)
...+..|...|++++| ++ ++.++++|+.|++|++||+.++ ......+.+|...|++++|+|
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~------- 86 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ------- 86 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-------
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-------
Confidence 3467778899999999 66 9999999999999999998743 245677899999999999999
Q ss_pred ccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 171 RSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 171 ~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
++.++++|+.||+|++|| +++.+..+.+|...|.+++|+ +++++|++|+.|+.|++||+.....
T Consensus 87 ------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s----p~~~~l~s~~~d~~i~~wd~~~~~~---- 152 (343)
T 2xzm_R 87 ------ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS----PDNRQILSAGAEREIKLWNILGECK---- 152 (343)
T ss_dssp ------STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC----SSTTEEEEEETTSCEEEEESSSCEE----
T ss_pred ------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC----CCCCEEEEEcCCCEEEEEeccCCce----
Confidence 889999999999999999 778888999999999999997 8999999999999999999974321
Q ss_pred cceeeccCCCCceeEEEEeecC---------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 249 ALKATLYGHEKPIKLMSVAGHK---------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~---------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.......+|...|.+++|+|.. +.+|++++.||.|++||...
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------------- 203 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----------------------------- 203 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------
Confidence 0112234789999999999843 26899999999999999432
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
+....+.+|...|.+++|+|++++|++|+.|+ |++||+...... ...+ .+...|.++
T Consensus 204 ----------------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-----~~~~-~~~~~v~~v 261 (343)
T 2xzm_R 204 ----------------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-----QREF-DAGSTINQI 261 (343)
T ss_dssp ----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-----SEEE-ECSSCEEEE
T ss_pred ----------------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-----ceee-cCCCcEEEE
Confidence 12245667899999999999999999999998 999999654322 2333 245679999
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCCccccc--ccccC------CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDTGMLAN--SLLCN------YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~--~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+|+|+ .++++| .|+.|++||+.+++... .+... ...+|...+.+++|+|+|++|++|+ .||.|++|++
T Consensus 262 ~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~Dg~v~~w~~ 338 (343)
T 2xzm_R 262 AFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF--TDGVIRTFSF 338 (343)
T ss_dssp EECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE--TTSEEEEEEE
T ss_pred EECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec--CCceEEEEEE
Confidence 99999 888775 68889999998876654 33211 0125778899999999999999999 6699999998
Q ss_pred cCCc
Q 010784 470 SNAT 473 (501)
Q Consensus 470 ~~~~ 473 (501)
.++.
T Consensus 339 ~~g~ 342 (343)
T 2xzm_R 339 ETSA 342 (343)
T ss_dssp EEEE
T ss_pred EccC
Confidence 7643
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-42 Score=319.92 Aligned_cols=298 Identities=17% Similarity=0.205 Sum_probs=233.3
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceec-cc-CCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATL-SD-HKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~-~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
..+..|..+|.+++++++ ++|+|+.|+.|++|++..+. .....+ .+ |.+.|++++|+| ++++
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-------------~~~~ 72 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-------------HTSL 72 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-------------TSSE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-------------CCCE
Confidence 456678889999999998 99999999999999998642 344455 44 999999999999 8899
Q ss_pred EEEeeCCCceEEecC---------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 181 LVTSSCDHSIRLWWK---------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 181 l~s~~~dg~i~vwd~---------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
|++|+.|++|+|||. ...+..+.+|...|.+++|+ +++++|++|+.|++|++||+..... ...++
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----p~g~~las~s~D~~v~iwd~~~~~~--~~~~~ 146 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS----NDGYYLATCSRDKSVWIWETDESGE--EYECI 146 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC----TTSCEEEEEETTSCEEEEECCTTCC--CCEEE
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC----CCCCEEEEEeCCCEEEEEeccCCCC--CeEEE
Confidence 999999999999982 23566788999999999997 8999999999999999999954321 11246
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
..+.+|...|.+++|+| ++.+|++|+.|+.|++||..++..
T Consensus 147 ~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~-------------------------------------- 187 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW-------------------------------------- 187 (330)
T ss_dssp EEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE--------------------------------------
T ss_pred EEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe--------------------------------------
Confidence 67889999999999998 788999999999999999765421
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEecCCCCCCC--CCCCcccccC-cccCeEEEEecCCeE
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDIRRSQDAV--KPQPMAELDG-HVGSVTQLHMDPYKI 405 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~~~~~-h~~~v~~l~~~~~~~ 405 (501)
+.+..+.+|...|.+++|+|+ +.+|++|+.|+ |++||++...... .......+.+ |...|++++|+++.+
T Consensus 188 ----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 263 (330)
T 2hes_X 188 ----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL 263 (330)
T ss_dssp ----EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred ----eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence 234567789999999999998 77899999998 9999997653210 0012234444 889999999998877
Q ss_pred EEEecCCCcEEEEeCCCcc--cccccccCCCCCCCc-ceeeeEeec--cccEEEEeecCCCceEEEeeccC
Q 010784 406 VTGGRDDLRINIWETDTGM--LANSLLCNYPEEADI-STGCSAMAV--SGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~-~v~~~~~s~--~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+++++.||.|++||..+++ ...... .+|.. .|.+++|+| ++++|++|+ .||.|++|++..
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~h~~~~v~~v~~~~~~~~~~las~s--~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRA----LCHGVYEINVVKWLELNGKTILATGG--DDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEES----CTTTTSCEEEEEEC-----CCEEEEE--TTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccc----cccccceEEEEEEecCCCceEEEEec--CCCcEEEEEecc
Confidence 7777899999999998763 232221 34555 899999999 789999999 669999999864
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-41 Score=323.39 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=242.3
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc------------------ceeEEEeeccCcCc
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA------------------RITCMRLFPLHETS 168 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~------------------~V~~~~~~~~~~~~ 168 (501)
..|...|++++|+|+|.++|+|+ ++.+++|++.++ +.+..+.+|.. .|++++|+|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~----- 133 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP----- 133 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECT-----
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECC-----
Confidence 35888899999999999999987 689999999885 66666665542 489999998
Q ss_pred ccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784 169 LFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246 (501)
Q Consensus 169 ~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 246 (501)
++++|++|+.||+|++|| .++.+..+.+|...|.+++|+ +++++|++|+.|++|++||+.++..
T Consensus 134 --------dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~----p~~~~l~s~s~d~~v~iwd~~~~~~-- 199 (393)
T 1erj_A 134 --------DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF----PSGDKLVSGSGDRTVRIWDLRTGQC-- 199 (393)
T ss_dssp --------TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred --------CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc----CCCCEEEEecCCCcEEEEECCCCee--
Confidence 899999999999999999 677888899999999999997 8999999999999999999998753
Q ss_pred cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
...+. +...+.+++++|.++.+|++|+.|+.|++||+++++.+.....
T Consensus 200 ----~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------------------------- 247 (393)
T 1erj_A 200 ----SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------------------------- 247 (393)
T ss_dssp ----EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------
T ss_pred ----EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc---------------------------
Confidence 44443 5678999999987889999999999999999988754321100
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC------CCCCcccccCcccCeEEEE
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV------KPQPMAELDGHVGSVTQLH 399 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~------~~~~~~~~~~h~~~v~~l~ 399 (501)
......+|...|.+++|+|++++|++|+.|+ |++||+++..... ...+...+.+|...|.+++
T Consensus 248 ----------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 248 ----------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp ---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred ----------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 0012246889999999999999999999998 9999998753210 0223456778999999999
Q ss_pred ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec------cccEEEEeecCCCceEEEeeccCC
Q 010784 400 MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV------SGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 400 ~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++|+ .++++|+.||.|++||+.+++.+..+ .+|...|.+++|++ ++++|++|+ .||.|++|++...
T Consensus 318 ~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-----~~h~~~v~~v~~~~~~~~~p~~~~l~sgs--~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKKI 390 (393)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-----CCCCCCEEEEEecCCcCcCCCCCEEEEEC--CCCcEEECccccc
Confidence 9999 89999999999999999999999888 56788999999876 789999999 6699999998643
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-41 Score=313.60 Aligned_cols=270 Identities=19% Similarity=0.251 Sum_probs=234.4
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+...++.+|.+.|++++|+| ++++|++|+.||+|++|| ++..+..+..|...|.+++|+ ++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-------------d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s----~~ 108 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-------------DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA----PS 108 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC----TT
T ss_pred hhheeecCCCCceEEEEECC-------------CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC----CC
Confidence 55678899999999999999 899999999999999999 777888899999999999997 89
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+++|++|+.|+.|++|++.+... .......+.+|...|.++.|++ ++ .+++++.|+.|++||+++++
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~--------- 175 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQ--------- 175 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSB--SCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTE---------
T ss_pred CCEEEEEeCCCeEEEEECccCCC--cceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCc---------
Confidence 99999999999999999987542 1224566789999999999986 44 58999999999999998763
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.+..+.+|.+.|.+++|+|+++++++|+.|+ |++||+++++..
T Consensus 176 -----------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~- 219 (340)
T 1got_B 176 -----------------------------------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR- 219 (340)
T ss_dssp -----------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-
T ss_pred -----------------------------------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE-
Confidence 3345677999999999999999999999998 999999986554
Q ss_pred CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784 381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 459 (501)
..+.+|...|++++|+|+ .++++|+.||.|++||+++++.+..+.. ..+...|.+++|+|+|++|++|+
T Consensus 220 -----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~-- 289 (340)
T 1got_B 220 -----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGY-- 289 (340)
T ss_dssp -----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEE--
T ss_pred -----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEEC--
Confidence 788999999999999999 9999999999999999999888777632 22345799999999999999999
Q ss_pred CCceEEEeecc---------------------CCccceeecCCCCceeeec
Q 010784 460 EPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 460 ~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~ 489 (501)
.||.|++||+. +++..+++++.|+.+++|+
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 66999999953 3455678999999999996
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=313.41 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=231.8
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
...+.+++|.+.|++++|+|++ .+++.+|+||+.|++|+||| .+. ....+.+|...|.+++|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~---------~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~---- 89 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNK---------KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS---- 89 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC----------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----
T ss_pred heeeecccCCCcEEEEEEecCC---------CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC----
Confidence 4456678999999999999832 11467999999999999998 333 345688999999999997
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
+++.++++|+.|++|++||+.++. .+..+..|...+.+++|+| ++++|++|+.||.|++||+++++.
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~------~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~------ 156 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGK------QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK------ 156 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCC------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce------
Confidence 789999999999999999999876 4777888999999999998 788999999999999999987642
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
...+..|...|.+++|+|++++|++|+.|+ |++||+++++.
T Consensus 157 --------------------------------------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~ 198 (321)
T 3ow8_A 157 --------------------------------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198 (321)
T ss_dssp --------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred --------------------------------------eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 234455778899999999999999999999 99999998765
Q ss_pred CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
+ ..+.+|...|++++|+|+ ++|++|+.||.|++||+++++.+.++ .+|...|.+++|+|++++|++++
T Consensus 199 ~------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 199 L------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp E------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred E------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-----cCCCCceEEEEECCCCCEEEEEe
Confidence 4 888999999999999999 99999999999999999999998888 57788999999999999999999
Q ss_pred cCCCceEEEeeccC---------------------CccceeecCCCCceeeecc
Q 010784 458 YGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 458 ~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~ 490 (501)
.|+.|++||+.. .+..+++++.|+.+++|+.
T Consensus 268 --~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 268 --SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred --CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 669999999643 3456789999999999985
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-42 Score=329.72 Aligned_cols=335 Identities=12% Similarity=0.158 Sum_probs=268.4
Q ss_pred CCceEEeeCCcE-EEeec----------CCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 112 PHDHILLDNNDI-FSTQG----------SSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 112 ~i~~~~~~~~~~-~~~~g----------~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
.+.+++|+|++. ++++| +.|+.|++|++.++.. .+..+ .|...|++++|+| ++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~-------------~~ 79 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH-------------NN 79 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS-------------SS
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC-------------CC
Confidence 589999999987 99999 8899999999987532 33333 6899999999999 89
Q ss_pred cEEEEeeCCCceEEec--C----CceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc---cc
Q 010784 179 NVLVTSSCDHSIRLWW--K----GSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG---QQ 248 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~----~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~---~~ 248 (501)
++|++|+.||.|++|| . ...+..+.+|...|.+++|+ ++ +++|++|+.||.|++||+.++.... ..
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN----AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC----SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc----CCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 9999999999999999 2 24778889999999999997 66 8899999999999999999875110 00
Q ss_pred cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCe---EEEEeC
Q 010784 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESM---LYIASG 324 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~ 324 (501)
........|...|.+++|+|.++.+|++++.||.|++||+++++.+......... .....+.++.++++. ++.+..
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 1123356799999999999855889999999999999999988654433221100 115567778887763 333443
Q ss_pred -C---cEEEEEcCCC-ceEeeec-cCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784 325 -S---SVVTIDLRTM-QKVMTPA-ICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT 396 (501)
Q Consensus 325 -~---~i~~~d~~~~-~~~~~~~-~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 396 (501)
+ .|++||++++ +.+..+. +|...|.+++|+| ++.+|++++.|+ |++||+++++.+ ..+.+|...|+
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~------~~~~~~~~~v~ 309 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL------SQFPARGNWCF 309 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE------EEEECSSSCCC
T ss_pred CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc------eeecCCCCceE
Confidence 3 8999999987 5667777 8999999999999 899999999888 999999986554 88889999999
Q ss_pred EEEecCC--eEEEEecCCCcEEEEeCCCccccccccc------------------------------CCCCCCCcceeee
Q 010784 397 QLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLC------------------------------NYPEEADISTGCS 444 (501)
Q Consensus 397 ~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~v~~~ 444 (501)
+++|+|+ .++++++.||.|++||+.+++....... ..+..+...+.++
T Consensus 310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (416)
T 2pm9_A 310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA 389 (416)
T ss_dssp CEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence 9999998 6999999999999999988765433211 1112256778899
Q ss_pred EeeccccEEEEeecCCCceEEEeeccCC
Q 010784 445 AMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+|+|+|++|++++ .|+.|++|++.++
T Consensus 390 ~~s~dg~~la~~~--~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 390 HWAFGGKLVQITP--DGKGVSITNPKIS 415 (416)
T ss_dssp EEETTTEEECBCT--TSSCBCCBCCCCC
T ss_pred EEeeCCeEEEEeC--CCCeEEEEEeccC
Confidence 9999999999998 6699999998764
No 26
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-40 Score=336.06 Aligned_cols=363 Identities=10% Similarity=0.053 Sum_probs=282.5
Q ss_pred eeEEEecCCC-CceEEeeC--CcEEEeecCCeeeEEEEecccc-------cccceecccCCcceeEEEeeccCc------
Q 010784 103 DVCFYSVAKP-HDHILLDN--NDIFSTQGSSIQNIKIDNFLSE-------SYYRATLSDHKARITCMRLFPLHE------ 166 (501)
Q Consensus 103 ~~~~~~~~~~-i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~~-------~~~~~~~~~h~~~V~~~~~~~~~~------ 166 (501)
...+..|... |++++|+| ++.++++|+.|+.|++||+.++ .+....+.+|...|.+++|+|++.
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 3556678888 99999999 9999999999999999999743 367778889999999999999764
Q ss_pred -------------------------CcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEee
Q 010784 167 -------------------------TSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDK 215 (501)
Q Consensus 167 -------------------------~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s 215 (501)
..+.++.|+|++. ++++++.||.|++|| .++.+..+.+|.. .|.+++|+
T Consensus 136 ~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred cCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 2355667788887 899999999999999 7778888999999 99999997
Q ss_pred ecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeec-c---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784 216 LLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATL-Y---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST 290 (501)
Q Consensus 216 ~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~ 290 (501)
++ +++|++|+.||.|++||+.+++ .+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+++
T Consensus 216 ----~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 216 ----PDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ----STTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTT
T ss_pred ----CCCCCEEEEEeCCCeEEEEECCCCC------EeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCC
Confidence 78 9999999999999999999876 36666 5 899999999998 778999999999999999998
Q ss_pred CccccceecccceecCCCceeeec-CCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC------------
Q 010784 291 SSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS------------ 356 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~------------ 356 (501)
++.+....... ......+..+.+ ....++.+. ++.+++||+++++.+..+.+|...|.+++| |+
T Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 284 SKCVQKWTLDK-QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME 361 (615)
T ss_dssp TEEEEEEECCT-TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred CcEEEEEcCCC-CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence 86554332211 011122333333 233333333 347888888877777776666555555554 33
Q ss_pred ---------------------CcEEEEEcCCc-EEEEecC----------------------------------------
Q 010784 357 ---------------------KSLICTGGIGK-AMTWDIR---------------------------------------- 374 (501)
Q Consensus 357 ---------------------~~~l~~~~~d~-i~iwd~~---------------------------------------- 374 (501)
+..+++++.++ |++||+.
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 44444444444 5555443
Q ss_pred ----------------------------------CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784 375 ----------------------------------RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE 419 (501)
Q Consensus 375 ----------------------------------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd 419 (501)
+++.. . ..+.+|...|++++|+|+ +++++++.||.|++||
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~----~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS----F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE----E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc----c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 22110 0 456678999999999999 9999999999999999
Q ss_pred CCCcccccccccCCCCC-CCcceeeeEeec----------cccEEEEeecCCCceEEEeeccCC----------------
Q 010784 420 TDTGMLANSLLCNYPEE-ADISTGCSAMAV----------SGCRIVTASYGEPGLLQFRDFSNA---------------- 472 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------~g~~l~s~~~d~~g~i~~w~~~~~---------------- 472 (501)
+.+++.+..+ .+ |...|++++|+| ++++|++++ .||.|++|++..+
T Consensus 517 ~~~~~~~~~~-----~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 589 (615)
T 1pgu_A 517 LQSREVKTSR-----WAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFIYSVKRPMKIIKALNAHKDGVNN 589 (615)
T ss_dssp TTTTEEEECC-----SCCCSSCEEEEEECCCC------CCSCCEEEEEE--TTSCEEEEESSCTTCCEEETTSSTTCEEE
T ss_pred CCCCcceeEe-----ecCCCCceeEEEEcCccccccccccCCCEEEEEc--CCCcEEEEECCCCceechhhhcCccceEE
Confidence 9999998888 34 788999999999 999999999 6699999997654
Q ss_pred ------ccceeecCCCCceeeecccC
Q 010784 473 ------TCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 473 ------~~~~~s~~~d~~~~~w~~~~ 492 (501)
+. +++++.|+.+++|+++.
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 23 77899999999999864
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-41 Score=325.50 Aligned_cols=322 Identities=12% Similarity=0.041 Sum_probs=267.0
Q ss_pred EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEec----ccccc-----cceeccc----------CCcceeEEEeecc
Q 010784 105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNF----LSESY-----YRATLSD----------HKARITCMRLFPL 164 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~----~~~~~-----~~~~~~~----------h~~~V~~~~~~~~ 164 (501)
....+..+|++++|+|++. ++|+|+.|+.|++|++ .++.. ....+.. |.+.|++++|+|
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 118 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH- 118 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-
Confidence 3444567899999999999 9999999999999999 76531 3334433 788999999999
Q ss_pred CcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784 165 HETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243 (501)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 243 (501)
++++|++|+.||.|++|| .+..+..+..|...|.+++|+ +++++|++++.||.|++||+.++.
T Consensus 119 ------------~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 119 ------------DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWN----KDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp ------------TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEEC----TTSSEEEEEETTCCEEEEETTTTE
T ss_pred ------------CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEEC----CCCCEEEEEecCCeEEEEECCCCc
Confidence 899999999999999999 888889999999999999997 899999999999999999998876
Q ss_pred ccccccceeeccCCCCc---------------eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 244 KRGQQALKATLYGHEKP---------------IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 244 ~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
....+..+... +.++.|++ + ..+++++.||.|++||+++++...... .+...
T Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~ 249 (425)
T 1r5m_A 183 ------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLI-----GHHGP 249 (425)
T ss_dssp ------EEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEEC-----CCSSC
T ss_pred ------EEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeec-----cCCCc
Confidence 36666666666 89999997 4 468899999999999999876543322 34455
Q ss_pred ceeeecCCCe--EEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784 309 PVDMKCHESM--LYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 309 ~~~~~~~~~~--~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 384 (501)
+.++.++++. ++.+. ++.+++||+++++.+..+..|...|.+++|+|++ ++++++.++ |++||+++++..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~----- 323 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL----- 323 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE-----
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----
Confidence 6666666554 33333 3589999999999999999999999999999999 888999888 999999986654
Q ss_pred cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc--------------------cccccccCCCCCCCc--ce
Q 010784 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM--------------------LANSLLCNYPEEADI--ST 441 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~--~v 441 (501)
..+..|...|.+++|+|+ +++++++.||.|++||+.+++ .+..+ ..|.. .|
T Consensus 324 -~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v 397 (425)
T 1r5m_A 324 -ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-----QSSQDNDYI 397 (425)
T ss_dssp -EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-----CCTTCCCCE
T ss_pred -EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-----cCcccCCce
Confidence 778889999999999999 889998999999999999888 77777 44544 89
Q ss_pred eeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 442 GCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
.+++|+|++++|++++ .||.|++|++.
T Consensus 398 ~~~~~s~~~~~l~~~~--~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAY--SLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTTSSEEEEEE--SSSCCEEEECC
T ss_pred EEEEccCCCceEEEEe--cCceEEEEeec
Confidence 9999999999999999 66999999985
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-40 Score=361.64 Aligned_cols=354 Identities=16% Similarity=0.261 Sum_probs=295.6
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+..|...|++++|+|+|.++++|+.|+.|++||..++ +.+..+.+|.+.|++++|+| ++++|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s 674 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS-------------DDSYIAT 674 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEeccCCCCEEEEEEec-------------CCCEEEE
Confidence 455678888999999999999999999999999999985 78889999999999999999 8999999
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
|+.||+|++|| +++.+..+.+|...|.+++|++ +.++.++++|+.||.|++||+.++. ....+.+|...|
T Consensus 675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~------~~~~~~~h~~~v 746 (1249)
T 3sfz_A 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKE------CRNTMFGHTNSV 746 (1249)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS--SSSCCEEEEEETTSCEEEEETTSSS------EEEEECCCSSCE
T ss_pred EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEec--CCCceEEEEEeCCCeEEEEECCCcc------hhheecCCCCCE
Confidence 99999999999 7888999999999999999972 2256799999999999999999886 478888999999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce--------ecCCCceeeecCC--CeEEEEeCCcEEEEE
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT--------SVPGVPVDMKCHE--SMLYIASGSSVVTID 331 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~i~~~d 331 (501)
++++|+| ++.++++++.||.|++||+++++........... .....+.++.+++ ..++++..+.+.+||
T Consensus 747 ~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 747 NHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 9999998 7889999999999999999988654433221111 1122344455544 455566677999999
Q ss_pred cCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784 332 LRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 332 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~ 408 (501)
+.++..+..+. +|...|.+++|+|++.++++++.++ |++||+.++... ..+.+|...|++++|+|+ .++++
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEE
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee------eecCCCccceEEEEECCCCCEEEE
Confidence 99999887765 7899999999999999999999998 999999986654 788899999999999999 78888
Q ss_pred ecCCCcEEEEeCCC------------------------------------------------------------------
Q 010784 409 GRDDLRINIWETDT------------------------------------------------------------------ 422 (501)
Q Consensus 409 gs~dg~i~iwd~~~------------------------------------------------------------------ 422 (501)
++.||.|++|++.+
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 88999999998542
Q ss_pred -------------cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc----------------
Q 010784 423 -------------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------- 473 (501)
Q Consensus 423 -------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------- 473 (501)
++.+..+ .+|...|.+++|+|+|++|++++ .||.|++|++..+.
T Consensus 980 ~~~g~i~i~d~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSSG-----VGHKKAVRHIQFTADGKTLISSS--EDSVIQVWNWQTGDYVFLQAHQETVKDFRL 1052 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEEC-----CCCSSCCCCEEECSSSSCEEEEC--SSSBEEEEETTTTEEECCBCCSSCEEEEEE
T ss_pred cCCCCEEEEEcCCCceeeec-----ccCCCceEEEEECCCCCEEEEEc--CCCEEEEEECCCCceEEEecCCCcEEEEEE
Confidence 1111112 35788899999999999999999 66999999976542
Q ss_pred ---cceeecCCCCceeeecccCC
Q 010784 474 ---CPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 474 ---~~~~s~~~d~~~~~w~~~~~ 493 (501)
..+++++.|+.+++|++...
T Consensus 1053 ~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1053 LQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp CSSSEEEEEESSSEEEEEETTTT
T ss_pred cCCCcEEEEECCCcEEEEECCCC
Confidence 34668889999999998654
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-40 Score=310.44 Aligned_cols=296 Identities=18% Similarity=0.271 Sum_probs=247.6
Q ss_pred eeeEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784 102 LDVCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQR 176 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~ 176 (501)
++..+..|...|++|+|+|+ +.+|+||+.|++|+|||+.++. .....+.+|.+.|.+++|+|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~------------- 96 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS------------- 96 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-------------
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-------------
Confidence 34567789999999999997 6899999999999999987642 35677899999999999999
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
++++|++|+.||.|++|+ ..........+...+..+.++ +++.+|++|+.|+.+++||+..... .....
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~ 167 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS----SDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQD 167 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSSCEEEEETTSCEEEECTTSCEE-----EEECS
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe----ecCccceeecCCCeEEEEEeCCCce-----EEEEe
Confidence 899999999999999998 555666677788888888886 7899999999999999999987653 45567
Q ss_pred cCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 255 YGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
.+|...+..++|++.. ..++++++.|+.|++||+++++
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----------------------------------------- 206 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----------------------------------------- 206 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----------------------------------------
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----------------------------------------
Confidence 7899999999998753 4578899999999999998763
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
.+..+.+|.+.|++++|+|++++|++|+.|+ |++||+++.+.+ ..+.. ...|.+++|+|+ .++++ +.
T Consensus 207 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~~~~~~~~~~-~~ 275 (340)
T 4aow_A 207 ---LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------YTLDG-GDIINALCFSPNRYWLCA-AT 275 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEEC-SSCEEEEEECSSSSEEEE-EE
T ss_pred ---eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee------eeecC-CceEEeeecCCCCceeec-cC
Confidence 3345667899999999999999999999998 999999986654 56654 468999999999 66655 58
Q ss_pred CCcEEEEeCCCcccccccccC----CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 412 DLRINIWETDTGMLANSLLCN----YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 412 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
|+.|++||++++..+..+... ....|...|++++|+|+|++|++|+ .||.|++||+++|.
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY--TDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEeCCCcC
Confidence 999999999988777665422 1246788999999999999999999 66999999999875
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-40 Score=304.93 Aligned_cols=251 Identities=19% Similarity=0.272 Sum_probs=221.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..+++.+|.+.|++++|+| ++++|++|+.||+|++|| ++..+..+..|..+|.+++|+ ++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp-------------~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~----~~ 66 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHP-------------TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI----AR 66 (304)
T ss_dssp CCEEEEEEECSCEEEEEECS-------------SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE----GG
T ss_pred eeEEeecCCCCceEEEEECC-------------CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEe----CC
Confidence 55678999999999999999 899999999999999999 677888999999999999998 78
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+++|++|+.|++|++||+.+++ .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~-------- 131 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGE------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA-------- 131 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE--------
T ss_pred CCEEEEECCCCEEEEEECCCCc------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc--------
Confidence 9999999999999999999887 4788899999999999998 778999999999999999876521
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
....+.+|...|.+++|+| ++.+|++|+.|+ |++||++.....
T Consensus 132 -----------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 132 -----------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (304)
T ss_dssp -----------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred -----------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 2245677999999999999 678999999999 999999876543
Q ss_pred CCCCCcccc-cCcccCeEEEEecC--C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 380 VKPQPMAEL-DGHVGSVTQLHMDP--Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 380 ~~~~~~~~~-~~h~~~v~~l~~~~--~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
..+ .+|...+..+.++| + .++++|+.|++|++||+++++++.++ .+|...|..++|+|++++|++
T Consensus 177 ------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 177 ------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp ------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEE
T ss_pred ------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----CCCCCCEEEEEECCCCCEEEE
Confidence 333 45667899999987 4 78999999999999999999999999 567889999999999999999
Q ss_pred eecCCCceEEEeeccCCcc
Q 010784 456 ASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~~~~~ 474 (501)
|+ .||.|++||......
T Consensus 246 ~s--~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 246 GS--EDGTLKIWNSSTYKV 262 (304)
T ss_dssp EE--TTSCEEEEETTTCCE
T ss_pred Ec--CCCeEEEEECCCCce
Confidence 99 669999999876543
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-41 Score=320.49 Aligned_cols=294 Identities=19% Similarity=0.240 Sum_probs=242.7
Q ss_pred EEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEE
Q 010784 136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLS 213 (501)
Q Consensus 136 vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~ 213 (501)
.|+... ..+.+++.+|.+.|++++|+| ++++|+||+.||+|+||| +++....+..|...|.+++
T Consensus 50 ~~~~~~-~~~~~~l~gH~~~V~~~~~sp-------------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 50 SFNPTD-LVCCRTLQGHSGKVYSLDWTP-------------EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA 115 (380)
T ss_dssp CCCCCC-CEEEEEECCCSSCEEEEEECT-------------TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE
T ss_pred ccccce-eEEeecccccccEEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE
Confidence 445444 366788999999999999999 899999999999999999 7788889999999999999
Q ss_pred eeecCCCCCCEEEEeeCCCcEEEEeccCCCc-cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 214 DKLLGDGSGKILASGGEDATVRLWSLSSSGK-RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 214 ~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
|+ +++++|++|+.|+.|++||+.+... .........+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++
T Consensus 116 ~s----~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 116 FA----PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp EC----TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EC----CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 97 8999999999999999999976432 112234567889999999999998767789999999999999999875
Q ss_pred cccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMT 370 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~i 370 (501)
.+..... ....+|...|.++++++ ++.+|++|+.|+ |++
T Consensus 192 ~~~~~~~---------------------------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 192 RISIFGS---------------------------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp EEEEECC---------------------------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred EEEEeec---------------------------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 4321100 01145888999999987 789999999999 999
Q ss_pred EecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC--CCCCcceeeeEee
Q 010784 371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--EEADISTGCSAMA 447 (501)
Q Consensus 371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s 447 (501)
||++... ..+..+.+|.+.|++++|+|+ .++++|+.||+|++||+++++.+..+..+.. ..+...|++++|+
T Consensus 233 wd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 233 WDLRITS-----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp EETTTTC-----CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred EECCCCC-----cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 9998542 235788999999999999999 9999999999999999999998887754321 1233458999999
Q ss_pred ccccEEEEeecCCCceEEEeecc-------------------------CCccceeecCCCCceeeecccCC
Q 010784 448 VSGCRIVTASYGEPGLLQFRDFS-------------------------NATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 448 ~~g~~l~s~~~d~~g~i~~w~~~-------------------------~~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
|+|++|++|+ .+|.|++||.. +++..+++|+.|+.+++|++...
T Consensus 308 ~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 308 ISGRLLFAGY--SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SSSSEEEEEC--TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCEEEEEE--CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999 66999999843 33456789999999999998643
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-41 Score=348.82 Aligned_cols=345 Identities=9% Similarity=0.034 Sum_probs=256.0
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.+..+|.+++|++ +.+|++++.|+.|++||+.++ +.+..+. |.+.|++++|+| ++++|++|+.|
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp-------------~g~~l~sgs~d 119 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDA-------------SLDWMLIGLQN 119 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCT-------------TCSEEEEEETT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECC-------------CCCEEEEEcCC
Confidence 3566799999999 779999999999999999985 6667775 778999999999 89999999999
Q ss_pred CceEEec--CCcee-----------eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 188 HSIRLWW--KGSCQ-----------RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 188 g~i~vwd--~~~~~-----------~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
|+|++|| .+... ..+.+|.++|.+++|+ | ++..+++|+.||.| +||++++.. ...
T Consensus 120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s----p~~~~~l~~g~~dg~v-lWd~~~~~~------~~~ 188 (902)
T 2oaj_A 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN----PRDIGTVLISYEYVTL-TYSLVENEI------KQS 188 (902)
T ss_dssp SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE----TTEEEEEEEECSSCEE-EEETTTTEE------EEE
T ss_pred CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc----cCCCCEEEEEeCCCcE-EEECCCCce------EEE
Confidence 9999999 33332 3457899999999998 5 45789999999999 999998653 444
Q ss_pred ccCC------------------CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec----ccce--------
Q 010784 254 LYGH------------------EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC----VGMT-------- 303 (501)
Q Consensus 254 ~~~~------------------~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~-------- 303 (501)
+..| ...|.+++|+| ++.+|++|+.||.|++||+++++.+..... .+..
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~ 267 (902)
T 2oaj_A 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS 267 (902)
T ss_dssp ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCC
T ss_pred EecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCC
Confidence 4433 57899999998 788999999999999999988765321000 0000
Q ss_pred -ecCCCceeeec--------------------------------------------------------------------
Q 010784 304 -SVPGVPVDMKC-------------------------------------------------------------------- 314 (501)
Q Consensus 304 -~~~~~~~~~~~-------------------------------------------------------------------- 314 (501)
.....+.++.+
T Consensus 268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~ 347 (902)
T 2oaj_A 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVN 347 (902)
T ss_dssp SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEE
T ss_pred ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEE
Confidence 00000000000
Q ss_pred ---------------CCCeEEEEe-CCcEEEEEcCCCceEee-------e------------------------------
Q 010784 315 ---------------HESMLYIAS-GSSVVTIDLRTMQKVMT-------P------------------------------ 341 (501)
Q Consensus 315 ---------------~~~~~~~~~-~~~i~~~d~~~~~~~~~-------~------------------------------ 341 (501)
++..+++.+ ++.+++||+.++..... +
T Consensus 348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~ 427 (902)
T 2oaj_A 348 ILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK 427 (902)
T ss_dssp EEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC
T ss_pred EEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC
Confidence 011122222 35788888866643221 2
Q ss_pred ----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc--c-----cCcccCeEEEEecCC-eEEEE
Q 010784 342 ----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE--L-----DGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 342 ----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~-----~~h~~~v~~l~~~~~-~~l~~ 408 (501)
.+|...+.+++|+|++++|++|+.|+ |++||+.++... ...... + .+|...|++++|+|+ ++||+
T Consensus 428 ~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs 505 (902)
T 2oaj_A 428 DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAETLELAV 505 (902)
T ss_dssp CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE
T ss_pred CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCCCeEEE
Confidence 22333344455678999999999999 999999987421 001111 1 278899999999999 99999
Q ss_pred ecCCCcEEEEeCCCcc---------------------------------------------cccccccCCCCCCCcceee
Q 010784 409 GRDDLRINIWETDTGM---------------------------------------------LANSLLCNYPEEADISTGC 443 (501)
Q Consensus 409 gs~dg~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~v~~ 443 (501)
|+.||+|+|||+.+++ ++.++ .+|...|++
T Consensus 506 gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-----~~h~~~V~s 580 (902)
T 2oaj_A 506 SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-----HANKGKTSA 580 (902)
T ss_dssp EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-----CCCSCSEEE
T ss_pred EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-----EcCCCcEEE
Confidence 9999999999998763 23344 468899999
Q ss_pred eEeeccccEEEEeecCCCceEEEeeccCC-----------------------------------ccceeecCCCCceeee
Q 010784 444 SAMAVSGCRIVTASYGEPGLLQFRDFSNA-----------------------------------TCPVLKHEVQNDSKFW 488 (501)
Q Consensus 444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~~~-----------------------------------~~~~~s~~~d~~~~~w 488 (501)
++||||| +||+|+ .|+.|++||+..+ ...+++|+.|+++++|
T Consensus 581 vafSpdG-~lAsgs--~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 581 INNSNIG-FVGIAY--AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITY 657 (902)
T ss_dssp EEECBTS-EEEEEE--TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEE
T ss_pred EEecCCc-EEEEEe--CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEE
Confidence 9999999 999999 6799999997542 1356789999999999
Q ss_pred cc
Q 010784 489 GP 490 (501)
Q Consensus 489 ~~ 490 (501)
++
T Consensus 658 d~ 659 (902)
T 2oaj_A 658 KI 659 (902)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.2e-40 Score=307.60 Aligned_cols=273 Identities=18% Similarity=0.264 Sum_probs=233.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+...++.+|.+.|++++|+| ++++|+||+.||+|+||| +++....+..|...|.+++|+ |+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~-------------d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~s----p~ 117 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCK-------------DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYA----PS 117 (354)
T ss_dssp CEEEEEECCSSCEEEEEECT-------------TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEEC----TT
T ss_pred EEEEEecCCCCeEEEEEECC-------------CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEEC----CC
Confidence 45677899999999999999 899999999999999999 677778888899999999997 89
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+.+|++|+.|+.+++|++..............+.+|...|.+++|+| ++..|++++.|++|++||+++++
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~--------- 187 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQ--------- 187 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCC---------
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCe---------
Confidence 99999999999999999976533222334566778999999999997 67789999999999999998764
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
.+..+.+|...|.+++++| ++++|++|+.|+ |++||+++++.
T Consensus 188 -----------------------------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 188 -----------------------------------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp -----------------------------------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred -----------------------------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3345677899999999988 478999999988 99999998765
Q ss_pred CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
. ..+.+|...|++++|+|+ .++++|+.|++|++||+++++.+..+.. ..+...+.+++|+|+|++|++|+
T Consensus 233 ~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 233 V------QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp E------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEE
T ss_pred E------EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEE
Confidence 4 788999999999999999 8999999999999999998877766632 22345788999999999999999
Q ss_pred cCCCceEEEeecc---------------------CCccceeecCCCCceeeec
Q 010784 458 YGEPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 458 ~d~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~ 489 (501)
.|+.|++||+. +++..+++++.|+.+++|+
T Consensus 304 --~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 --NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 66999999964 3445678999999999995
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.3e-40 Score=316.01 Aligned_cols=326 Identities=11% Similarity=0.105 Sum_probs=261.7
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+++++|+|++.++++|+.|+.+++||..++ +....+..| ..+....|++ ++++|++|+.||.|++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~-------------~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKL-------------QMRRFILGTTEGDIKV 123 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECS-------------SSCEEEEEETTSCEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEec-------------CCCEEEEEECCCCEEE
Confidence 568999999999999999999999999985 666667776 4455556777 8999999999999999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
|| .+.....+.+|...|++++|+ +++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+| +
T Consensus 124 wd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~-~ 192 (420)
T 3vl1_A 124 LDSNFNLQREIDQAHVSEITKLKFF----PSGEALISSSQDMQLKIWSVKDGS------NPRTLIGHRATVTDIAIID-R 192 (420)
T ss_dssp ECTTSCEEEEETTSSSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTCC------CCEEEECCSSCEEEEEEET-T
T ss_pred EeCCCcceeeecccccCccEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCc------CceEEcCCCCcEEEEEEcC-C
Confidence 99 677777788999999999997 789999999999999999999876 4778889999999999998 7
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccce-------------------ecCCCceeeecCCCeEEEEeC---CcEE
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-------------------SVPGVPVDMKCHESMLYIASG---SSVV 328 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~---~~i~ 328 (501)
+.+|++++.||.|++||+++++.+......... .....+.++.++++..+++++ +.++
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 889999999999999999988765543321100 012445556666666555543 4899
Q ss_pred EEEcCCCceEeeec-cCCCcEEEEEEcCCCc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCCe
Q 010784 329 TIDLRTMQKVMTPA-ICKPILHSFSIMPSKS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPYK 404 (501)
Q Consensus 329 ~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~ 404 (501)
+||+++++.+..+. .|...|.+++|+|++. +|++|+.|+ |++||+++++.. +..+.. |...|.++.+.+..
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~ 347 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-----VGEFLINEGTPINNVYFAAGA 347 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-----SEEEEESTTSCEEEEEEETTE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-----hhhhhccCCCCceEEEeCCCC
Confidence 99999998877665 4788999999999998 999999988 999999987542 456665 67788888776568
Q ss_pred EEEEecCCCcEEEEeCCCccccccc---ccC-CCCCCCcceeeeEeecccc---EEEEeecCCCceEEEeeccC
Q 010784 405 IVTGGRDDLRINIWETDTGMLANSL---LCN-YPEEADISTGCSAMAVSGC---RIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 405 ~l~~gs~dg~i~iwd~~~~~~~~~~---~~~-~~~~~~~~v~~~~~s~~g~---~l~s~~~d~~g~i~~w~~~~ 471 (501)
++++++.||.|++|++........+ ... ....+...|..++|+|+++ .|++++ .+|.+.+|++++
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g--~~g~~~~~~~~~ 419 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG--KNNFCALYNLSN 419 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE--TTTEEEEEESCC
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc--CCceEEEEeccC
Confidence 8888899999999999874322111 000 0135678899999999999 676666 569999999875
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.7e-40 Score=302.49 Aligned_cols=266 Identities=19% Similarity=0.312 Sum_probs=229.5
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C------CceeeeccCCCCceEEEEeee
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K------GSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~------~~~~~~~~~h~~~v~~l~~s~ 216 (501)
.+..++.+|.+.|++++|+|. ++++|++|+.|++|++|| . +..+..+.+|...|.+++|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~------------~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s- 74 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG------------QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS------------CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-
T ss_pred EEEEEEccccceEEEEEccCC------------CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-
Confidence 455678999999999999983 358999999999999998 1 33567889999999999997
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
+++++|++|+.|++|++||+.+++ ....+.+|...|.+++|+| ++.+|++|+.|+.|++||++..
T Consensus 75 ---~dg~~l~s~s~D~~v~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~----- 139 (319)
T 3frx_A 75 ---ADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQ----- 139 (319)
T ss_dssp ---TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSC-----
T ss_pred ---CCCCEEEEEeCCCEEEEEECCCCC------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Confidence 899999999999999999999876 4788899999999999997 7889999999999999998643
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC------CcEEEEEcCCc-EE
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS------KSLICTGGIGK-AM 369 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~d~-i~ 369 (501)
.+..+.+|...|.++.++|. +.++++++.|+ |+
T Consensus 140 ----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 179 (319)
T 3frx_A 140 ----------------------------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179 (319)
T ss_dssp ----------------------------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred ----------------------------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence 23455678899999999985 45899999998 99
Q ss_pred EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
+||+++.+.. ..+.+|...|++++|+|+ ++|++|+.||.|++||+.+++.+.++.. ...|.+++|+|
T Consensus 180 ~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp 247 (319)
T 3frx_A 180 AWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA------QDEVFSLAFSP 247 (319)
T ss_dssp EEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------CSCEEEEEECS
T ss_pred EEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------CCcEEEEEEcC
Confidence 9999986544 778899999999999999 9999999999999999999999888842 35799999999
Q ss_pred cccEEEEeecCCCceEEEeecc-----------------------------CCccceeecCCCCceeeecccC
Q 010784 449 SGCRIVTASYGEPGLLQFRDFS-----------------------------NATCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~~~-----------------------------~~~~~~~s~~~d~~~~~w~~~~ 492 (501)
++.+|++++. +.+++|++. +++..+++|+.|+.+++|++..
T Consensus 248 ~~~~la~~~~---~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 248 NRYWLAAATA---TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SSSEEEEEET---TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CCCEEEEEcC---CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 9999999873 358888643 3456788999999999999864
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-40 Score=340.66 Aligned_cols=344 Identities=12% Similarity=0.079 Sum_probs=250.8
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
....+.+...|++++|+|++.++|+|+.|+.|+||+..+. +....+ .|...|++++|+| +++|+
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~~~~~-~~~~~V~~l~fsp--------------g~~L~ 73 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EVVIKL-EDRSAIKEMRFVK--------------GIYLV 73 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-EEEEEC-SSCCCEEEEEEET--------------TTEEE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EEEEEc-CCCCCEEEEEEcC--------------CCEEE
Confidence 3455678889999999999999999999999999998764 444443 5888999999998 46999
Q ss_pred EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce-------ee
Q 010784 183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK-------AT 253 (501)
Q Consensus 183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~~ 253 (501)
+++.|++|+||| +++++..+. |...|++++|+ +++++|++|+.||.|++||+.++... .. .+ ..
T Consensus 74 S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~s----p~g~~l~sgs~dg~V~lwd~~~~~~~-~~-~i~~~~~~~~~ 146 (902)
T 2oaj_A 74 VINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTD----ASLDWMLIGLQNGSMIVYDIDRDQLS-SF-KLDNLQKSSFF 146 (902)
T ss_dssp EEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECC----TTCSEEEEEETTSCEEEEETTTTEEE-EE-EECCHHHHHTC
T ss_pred EEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEEC----CCCCEEEEEcCCCcEEEEECCCCccc-cc-eeccccccccc
Confidence 999999999999 677777776 77899999997 89999999999999999999876520 00 00 34
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc-------------ceecCCCceeeecCCCeEE
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG-------------MTSVPGVPVDMKCHESMLY 320 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 320 (501)
+.+|.++|.+++|+|.+...+++|+.||.| +||+++++......... ...+...+.++.++++..+
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 578999999999998667899999999999 99999886554332110 0012355788888887665
Q ss_pred EEeC---CcEEEEEcCCCceEee--e---cc-------------CCCcEEEEEEc----CCC-cEEEEEcCC------cE
Q 010784 321 IASG---SSVVTIDLRTMQKVMT--P---AI-------------CKPILHSFSIM----PSK-SLICTGGIG------KA 368 (501)
Q Consensus 321 ~~~~---~~i~~~d~~~~~~~~~--~---~~-------------~~~~v~~v~~~----~~~-~~l~~~~~d------~i 368 (501)
++++ +.|++||+++++.+.. + .. |...|.+++|+ |++ .++++|+.+ .+
T Consensus 226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v 305 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL 305 (902)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence 5543 4899999999887653 2 11 34579999995 443 566666432 25
Q ss_pred EEEe-----------------------------------------------------------------------cCCCC
Q 010784 369 MTWD-----------------------------------------------------------------------IRRSQ 377 (501)
Q Consensus 369 ~iwd-----------------------------------------------------------------------~~~~~ 377 (501)
.+|+ +.++.
T Consensus 306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 5555 22221
Q ss_pred CCCC-----------------------------------CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 378 DAVK-----------------------------------PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 378 ~~~~-----------------------------------~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
...+ ......+.+|...+.+++|+|+ +++++|+.|++|++||+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence 0000 0000112344444555666888 999999999999999999
Q ss_pred Cccccc--ccccC----CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 422 TGMLAN--SLLCN----YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 422 ~~~~~~--~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++.... .+... ...+|...|.+++|+|||++||+|+ .||+|++|++..+
T Consensus 466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs--~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI--ETGDVVLFKYEVN 520 (902)
T ss_dssp CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE--TTSCEEEEEEEEC
T ss_pred CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe--cCcEEEEEEecCc
Confidence 875321 11100 0126788999999999999999999 6699999998644
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-40 Score=305.28 Aligned_cols=279 Identities=21% Similarity=0.226 Sum_probs=229.4
Q ss_pred cccceecccCCc-ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee---eeccCCCCceEEEEeee
Q 010784 143 SYYRATLSDHKA-RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ---RCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 143 ~~~~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~---~~~~~h~~~v~~l~~s~ 216 (501)
.+++.++.+|.+ .|++++|+| ++++|++|+.||+|+||| .+... ....+|...|.+++|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp-------------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s- 70 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNP-------------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS- 70 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECT-------------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-
T ss_pred EEEeeeecCCCCCcEEEEEECC-------------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-
Confidence 356778899988 999999999 899999999999999999 33322 2336899999999997
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
+++++|++|+.|++|++||+..+.. ..+..+.+|...|.+++|+| ++++|++|+.|+.|++||++++...
T Consensus 71 ---p~g~~l~s~s~D~~v~iw~~~~~~~----~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~-- 140 (345)
T 3fm0_A 71 ---PCGNYLASASFDATTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY-- 140 (345)
T ss_dssp ---TTSSEEEEEETTSCEEEEEECCC-E----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE--
T ss_pred ---CCCCEEEEEECCCcEEEEEccCCCe----EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe--
Confidence 8999999999999999999987642 24678889999999999998 7889999999999999999865321
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
+.+..+.+|...|.+++|+|++++|++|+.|+ |++||.+.
T Consensus 141 ---------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 141 ---------------------------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp ---------------------------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred ---------------------------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence 22345667899999999999999999999998 99999987
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---------------cccccccCCCCCCCc
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---------------LANSLLCNYPEEADI 439 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~~ 439 (501)
.+. .+..++.+|...|++++|+|+ ++|++|+.|++|++|+..... ++.++. ..|..
T Consensus 182 ~~~----~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~ 253 (345)
T 3fm0_A 182 DDW----VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS----GFHSR 253 (345)
T ss_dssp TEE----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC----SSCSS
T ss_pred CCE----EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec----CCCCC
Confidence 542 234678899999999999999 999999999999999974322 122221 23778
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccC------------------------------Cc-cceeecCCCCceeee
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN------------------------------AT-CPVLKHEVQNDSKFW 488 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~------------------------------~~-~~~~s~~~d~~~~~w 488 (501)
.|.+++|+|++..|++++ .|+.|++|+... .. ..+++++.|+.+++|
T Consensus 254 ~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 254 TIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp CEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred cEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 899999999999999999 669999998542 12 357799999999999
Q ss_pred cccCCC
Q 010784 489 GPQCYS 494 (501)
Q Consensus 489 ~~~~~~ 494 (501)
++....
T Consensus 332 ~~~~~~ 337 (345)
T 3fm0_A 332 KYQRPE 337 (345)
T ss_dssp EECC--
T ss_pred EecCCC
Confidence 987543
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-39 Score=301.86 Aligned_cols=317 Identities=15% Similarity=0.173 Sum_probs=260.6
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
+..++.+++++|+|.+++++..++.+.+|......+.. ...+|.+.|++++|+| ++++|++++ ||
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~-------------~~~~l~~~~-dg 72 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISN-------------PTRHVYTGG-KG 72 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECS-------------SSSEEEEEC-BS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEec-------------CCcEEEEcC-CC
Confidence 44569999999999999998887777777665543333 3448999999999999 889999999 99
Q ss_pred ceEEec--CCce---eeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 189 SIRLWW--KGSC---QRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 189 ~i~vwd--~~~~---~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
.|++|| .+.. +..+. .|...|.+++|+ +++++|++|+.||.|++||+.++.. .....+..|...|
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i 144 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL----PDGCTLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPAC 144 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC----TTSSEEEEEESSSEEEEEECCCC------EEEEEEECSSSCE
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEc----CCCCEEEEEcCCCcEEEEECCCCCc----ceeeecccCCCce
Confidence 999998 3332 22232 799999999997 8999999999999999999988652 2356677899999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE--Ee-CCcEEEEEcCCCceE
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI--AS-GSSVVTIDLRTMQKV 338 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~d~~~~~~~ 338 (501)
.+++|+| +++++++++.||.|++||+++++...... .+...+.++.++++...+ +. ++.+++||+++++.+
T Consensus 145 ~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee-----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence 9999998 78899999999999999999876543322 345567777776654333 33 358999999999888
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
..+. +...+.+++|+|+++++++++.++ |++||+++.+. ..+..|...|.+++|+|+ +++++++.||.|+
T Consensus 219 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 219 QQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp EEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-------EEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence 7765 678899999999999999999888 99999998653 467789999999999999 8888889999999
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+||+.+++.+... .|...+.+++|+|++++|++++ .||.|++|++.
T Consensus 291 ~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~ 336 (337)
T 1gxr_A 291 AWRTPYGASIFQS------KESSSVLSCDISVDDKYIVTGS--GDKKATVYEVI 336 (337)
T ss_dssp EEETTTCCEEEEE------ECSSCEEEEEECTTSCEEEEEE--TTSCEEEEEEE
T ss_pred EEECCCCeEEEEe------cCCCcEEEEEECCCCCEEEEec--CCCeEEEEEEe
Confidence 9999998887554 3577899999999999999999 66999999974
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.6e-39 Score=334.18 Aligned_cols=352 Identities=14% Similarity=0.144 Sum_probs=287.6
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
....+..|...|++++|+|++.++++|+.+|.|++||+.++ +.+..+.+|.+.|++++|+| ++++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l 70 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIA-------------RKNWI 70 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEG-------------GGTEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeC-------------CCCEE
Confidence 34567788999999999999999999999999999999985 78889999999999999999 89999
Q ss_pred EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
++|+.||.|++|| +++.+..+.+|.+.|++++|+ +++++|++|+.||.|++||+.++.. ....+.+|..
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~ 141 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH----PTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEH 141 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSEEEEEEGGGTSE-----EEEEEECCSS
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEe----CCCCEEEEEcCCCEEEEEECCCCce-----EEEEEcCCCC
Confidence 9999999999999 788888999999999999997 8999999999999999999988743 5778889999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEe---CCcEEEEEcCC
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIAS---GSSVVTIDLRT 334 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~i~~~d~~~ 334 (501)
.|.+++|+|.++..+++++.||.|++||+.++........ .....+..+.+.+ +..++++ ++.+.+||+++
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec----CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999986788999999999999999987754332221 2224455566554 4433332 24899999999
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e--EEEEec
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K--IVTGGR 410 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~--~l~~gs 410 (501)
++.+..+.+|...|.+++|+|++.++++++.|+ |++||+.+++.. ..+..|...+.+++|+|+ . +++++
T Consensus 218 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE------KTLNVGLERSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE------EEECCSSSSEEEEEECTTCGGGEEEEE-
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEeecCCCcEEEEEEccCCCceEEEEE-
Confidence 999999999999999999999999999999888 999999986654 788888999999999998 3 57766
Q ss_pred CCCcEEEEeCCCccccccccc--------------------------------------CCCCCCCcceeeeEeeccccE
Q 010784 411 DDLRINIWETDTGMLANSLLC--------------------------------------NYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 411 ~dg~i~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~s~~g~~ 452 (501)
.++.+.+|++..+.....+.. .....+...+.+++|+|+|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 370 (814)
T 3mkq_A 291 FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF 370 (814)
T ss_dssp ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence 677799998765432221110 000123445788999999999
Q ss_pred EEEeecCCCceEEEeecc----------------CCccceeecCCCCceeeecc
Q 010784 453 IVTASYGEPGLLQFRDFS----------------NATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~----------------~~~~~~~s~~~d~~~~~w~~ 490 (501)
+++++ + +.+.+|++. +++..+++++.++.+++|+.
T Consensus 371 la~~~-~--~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~ 421 (814)
T 3mkq_A 371 VTVVG-D--GEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN 421 (814)
T ss_dssp EEEEE-T--TEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEET
T ss_pred EEEec-C--CEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC
Confidence 99886 3 788888843 34566778888888888854
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-39 Score=309.01 Aligned_cols=299 Identities=11% Similarity=0.047 Sum_probs=244.8
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-----ccceecccCCcceeEEEeeccCcCcccccCCCCc-
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT- 177 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~- 177 (501)
..+..|..+|++++|+| .++++|+.|+.|++|++.++. .....+.+|...|++++|+| +
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~ 74 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-------------AI 74 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-------------EE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-------------cc
Confidence 34456888899999999 799999999999999999852 26788889999999999999 7
Q ss_pred ---C---cEEEEeeCCCceEEec--CCce-----eeeccCC-----CCceEEEEeeecCCCCCCE-EEEeeCCCcEEEEe
Q 010784 178 ---E---NVLVTSSCDHSIRLWW--KGSC-----QRCFKGH-----NGPVSTLSDKLLGDGSGKI-LASGGEDATVRLWS 238 (501)
Q Consensus 178 ---~---~~l~s~~~dg~i~vwd--~~~~-----~~~~~~h-----~~~v~~l~~s~~~~~~~~~-l~sg~~dg~i~iwd 238 (501)
+ ++|++++.||.|++|| .+.. +..+..| ...|.+++|++...+++++ |++|+.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 8 9999999999999999 5554 7778888 5999999996322267889 99999999999999
Q ss_pred ccC------CCccccccceeec-------cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784 239 LSS------SGKRGQQALKATL-------YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV 305 (501)
Q Consensus 239 ~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 305 (501)
+.+ +.... ......+ ..|...|.+++|+| ++ ++++++.||.|++||+++++.
T Consensus 155 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~------------ 219 (397)
T 1sq9_A 155 FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRP------------ 219 (397)
T ss_dssp EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEE------------
T ss_pred CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCce------------
Confidence 998 44200 0001144 45889999999998 66 999999999999999987632
Q ss_pred CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---C---CCcEEEEEEcCCCcEEEEEcCC---c-EEEEecCC
Q 010784 306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---C---KPILHSFSIMPSKSLICTGGIG---K-AMTWDIRR 375 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~---~~~v~~v~~~~~~~~l~~~~~d---~-i~iwd~~~ 375 (501)
+..+.. | ...|.+++|+|++++|++++.+ + |++||+++
T Consensus 220 --------------------------------~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 220 --------------------------------LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp --------------------------------EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred --------------------------------eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 234444 7 8899999999999999999988 7 99999998
Q ss_pred CCCCCCCCCcccccC-------------cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-CCC---
Q 010784 376 SQDAVKPQPMAELDG-------------HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-EEA--- 437 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-~~~--- 437 (501)
++.. ..+.+ |...|.+++|+|+ ++|++++.||.|++||+.+++.+..+..... ..|
T Consensus 268 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 268 GERI------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp CCEE------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred Cccc------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence 6554 77777 9999999999999 8999999999999999999999988851100 033
Q ss_pred ------------CcceeeeEeeccc----------cEEEEeecCCCceEEEeeccCC
Q 010784 438 ------------DISTGCSAMAVSG----------CRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 438 ------------~~~v~~~~~s~~g----------~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
...|.+++|+|+| ++|++++ .||.|++|++..+
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEec--CCCcEEEEEcCCC
Confidence 8899999999999 7999999 6699999998865
No 41
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.7e-39 Score=301.27 Aligned_cols=298 Identities=10% Similarity=0.091 Sum_probs=239.6
Q ss_pred eeeEEEecCCCCceEEeeCCc-EEEeecCC---eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 102 LDVCFYSVAKPHDHILLDNND-IFSTQGSS---IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
....+..|...|.+++|+|++ .++++|+. |+.|++|++.++........+|.+.|++++|+|++ ++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~ 79 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS----------LQ 79 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC----------TT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC----------CC
Confidence 344556688899999999988 56678887 99999999998633333345899999999999921 01
Q ss_pred CcEEEEeeCCCceEEec--CCc-eeeeccCCCCceEEEEeee--cCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee
Q 010784 178 ENVLVTSSCDHSIRLWW--KGS-CQRCFKGHNGPVSTLSDKL--LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA 252 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~-~~~~~~~h~~~v~~l~~s~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 252 (501)
+++|++|+.||.|++|| .++ .+..+.+|...|.++.|.+ ..++++++|++|+.||.|++||+.++.. ...
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-----~~~ 154 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-----PVA 154 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-----CSE
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-----cce
Confidence 79999999999999999 455 7888999999999997753 2347899999999999999999998763 355
Q ss_pred eccCCCC----ceeEEE----EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 253 TLYGHEK----PIKLMS----VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 253 ~~~~~~~----~v~~l~----~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
.+..|.+ .+.++. |++ ++.++++++.||.|++||+++++.
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~------------------------------- 202 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL------------------------------- 202 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE-------------------------------
T ss_pred eccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce-------------------------------
Confidence 5555444 788888 455 788999999999999999988642
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcC---CCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-----CcccCe
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMP---SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-----GHVGSV 395 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v 395 (501)
.....|...|.+++|+| ++.++++++.++ |++||+++.+.. ..+. +|...|
T Consensus 203 --------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~v 262 (357)
T 3i2n_A 203 --------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEKAHKSTV 262 (357)
T ss_dssp --------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEECCSSCE
T ss_pred --------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccCCCcCCE
Confidence 12234678899999999 999999999888 999999986654 4443 899999
Q ss_pred EEEEecCC-e-EEEEecCCCcEEEEeCCCcc-------------------cccccccCCCCCCCcceeeeEeeccccEEE
Q 010784 396 TQLHMDPY-K-IVTGGRDDLRINIWETDTGM-------------------LANSLLCNYPEEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 396 ~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 454 (501)
++++|+|+ . ++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|+|++|+
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-----TLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-----ECCSSCEEEEEECSSSTTEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-----ccCCCCeeEEEEcCCCCeEE
Confidence 99999999 5 89999999999999998653 33444 45788999999999999998
Q ss_pred -EeecCCCceEEEeeccCCc
Q 010784 455 -TASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 455 -s~~~d~~g~i~~w~~~~~~ 473 (501)
+++ .||.|++|++....
T Consensus 338 ~s~~--~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 338 VCSS--FDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEE--TTSEEEEEEECC--
T ss_pred EEec--CCCcEEEEECCCcc
Confidence 788 66999999998654
No 42
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.5e-39 Score=301.43 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=211.8
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC------C
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC------D 187 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d 187 (501)
.-+.+.+++.++.+.+ +.....|++.. .....|...|++++|+| ||++|++|+. |
T Consensus 9 sg~d~g~~~~~~~~~g-~~~~~~w~~p~-----~~p~~H~~~V~~v~fSp-------------DG~~las~s~d~~~~wd 69 (357)
T 4g56_B 9 SGVDLGTENLYFQSNG-SSKGSAWGRPV-----TAPACMEVQIGAVRYRR-------------DGALLLAASSLSSRTWG 69 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECS-------------SSCEEEEEECSSSSSCC
T ss_pred cCCCCCccceEEecCC-CccccccCCCC-----CCcccccCCEEEEEECC-------------CCCEEEEEcCCCCcccc
Confidence 3344455565655444 56678888654 23457999999999999 8999999997 6
Q ss_pred CceEEec--CCce----eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 188 HSIRLWW--KGSC----QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 188 g~i~vwd--~~~~----~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
+.|++|+ .+.. .....+|...|.+++|+ +++. +++++.||+|++||+.+++... .......+|...|
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s----~d~~-~l~~s~dg~v~lWd~~~~~~~~--~~~~~~~~h~~~V 142 (357)
T 4g56_B 70 GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV----SEKG-ILVASDSGAVELWEILEKESLL--VNKFAKYEHDDIV 142 (357)
T ss_dssp EEEEEESSCC---CGGGCSEEEECSSCEEEEEEE----TTTE-EEEEETTSCEEEC--------C--CCCEEECCCSSCE
T ss_pred CeEEEEECCCCCcceeEecccCCCCCCEEEEEEc----CCCC-EEEEECCCEEEEeeccccceeE--EEeeccCCCCCCE
Confidence 7888897 3322 23345689999999998 6664 5567889999999998875311 1123345799999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
++++|+| ++++|++|+.|+.|++||+++++ .+..+
T Consensus 143 ~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~--------------------------------------------~~~~~ 177 (357)
T 4g56_B 143 KTLSVFS-DGTQAVSGGKDFSVKVWDLSQKA--------------------------------------------VLKSY 177 (357)
T ss_dssp EEEEECS-SSSEEEEEETTSCEEEEETTTTE--------------------------------------------EEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCc--------------------------------------------EEEEE
Confidence 9999998 78899999999999999998763 34556
Q ss_pred ccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEE
Q 010784 342 AICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINI 417 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~i 417 (501)
.+|...|++++|+|++ .++++++.|+ |++||+++++.. ....+..|...+++++|+|+ .++++|+.|+.|++
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 7799999999999986 4788888888 999999987654 12334457788999999997 78999999999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeecc--------------------C-Cccc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFS--------------------N-ATCP 475 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~--------------------~-~~~~ 475 (501)
||+++++.+.++ .+|...|++++|+|++ ++|++|+ .|+.|++||+. + ++..
T Consensus 254 wd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 254 VNIKNPDSAQTS-----AVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp EESSCGGGCEEE-----CCCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred EECCCCcEeEEE-----eccceeEEEEEEcCCCCCEEEEEe--CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCE
Confidence 999999999988 5678899999999997 5789998 66999999954 2 3456
Q ss_pred eeecCCCCceeeecccCC
Q 010784 476 VLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 476 ~~s~~~d~~~~~w~~~~~ 493 (501)
+++++.|+.+++|++...
T Consensus 327 l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEETTSCEEEEECC--
T ss_pred EEEEcCCCeEEEEECCCC
Confidence 789999999999998654
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.8e-39 Score=327.66 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=243.0
Q ss_pred eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
...+..|...|+++++++++ .++++|+.|+.|++|++.+.. .....+.+|...|++++|+| +
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~ 441 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-------------D 441 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-------------T
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-------------C
Confidence 44677899999999999764 799999999999999987532 23567899999999999999 8
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+++|++|+.||+|+||| ++..+..+.+|...|.+++|+ +++++|++|+.|++|++||...... ........
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~ 514 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS----LDNRQIVSASRDRTIKLWNTLGECK---YTISEGGE 514 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSSCEEEEETTSCEEEECTTSCEE---EEECSSTT
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe----CCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCC
Confidence 99999999999999999 777888999999999999997 8999999999999999999865431 11122235
Q ss_pred CCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 256 GHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
+|...|.+++|+|+. ...+++++.|+.|++||+++++
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~------------------------------------------ 552 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------------------------------------------ 552 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC------------------------------------------
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc------------------------------------------
Confidence 799999999999853 3689999999999999998763
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
....+.+|.+.|++++|+|++++|++|+.|+ |++||+++++.+ ..+.. ...|.+++|+|+ .+++++ .|
T Consensus 553 --~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~sp~~~~l~~~-~~ 622 (694)
T 3dm0_A 553 --LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL------YSLEA-NSVIHALCFSPNRYWLCAA-TE 622 (694)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE------ECCBC-SSCEEEEEECSSSSEEEEE-ET
T ss_pred --EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE------EEecC-CCcEEEEEEcCCCcEEEEE-cC
Confidence 2345677999999999999999999999998 999999987654 55543 567999999999 777776 66
Q ss_pred CcEEEEeCCCcccccccccCCC--------------CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 413 LRINIWETDTGMLANSLLCNYP--------------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 413 g~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.|++||+++++.+..+..+.. ..+...+++++|+|+|++|++|+ .||.|++|++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs--~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY--TDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE--TTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc--CCCeEEEEecc
Confidence 7799999999988777643211 01122478899999999999999 66999999985
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=299.02 Aligned_cols=243 Identities=13% Similarity=0.121 Sum_probs=205.0
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce----ecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
...+..+|++++|++++. +++|+.||.|+|||+.++ +... .+.+|.+.|++++|+| ++++|
T Consensus 78 ~~~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~sp-------------dg~~l 142 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGERG-ILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLS-------------SGTQA 142 (344)
T ss_dssp EEEESSCEEEEEEETTTE-EEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECT-------------TSSEE
T ss_pred eeccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECC-------------CCCEE
Confidence 344566799999999975 668899999999999886 3332 3458999999999999 89999
Q ss_pred EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeec--cC
Q 010784 182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATL--YG 256 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~ 256 (501)
++|+.||+|++|| +++++..+.+|...|.+++|+ +++ .+|++|+.|++|++||+++++. ...+ ..
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~----~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~ 212 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS----PHKDSVFLSCSEDNRILLWDTRCPKP------ASQIGCSA 212 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----SSCTTEEEEEETTSCEEEEETTSSSC------EEECC---
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec----CCCCCceeeeccccccccccccccce------eeeeecce
Confidence 9999999999999 788899999999999999997 555 5889999999999999998764 4444 34
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|...+.+++|+|.++.+|++|+.||.|++||+++++.
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~------------------------------------------- 249 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC------------------------------------------- 249 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-------------------------------------------
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-------------------------------------------
Confidence 6667999999987888999999999999999987643
Q ss_pred eEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784 337 KVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD 412 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d 412 (501)
+..+.+|...|++++|+|++ ++|++|+.|+ |++||+++++. ..+.+|.+.|++++|+|+ .++++|+.|
T Consensus 250 -~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-------~~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 250 -VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-------FRSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-------EEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred -EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-------EEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 34567899999999999997 6899999998 99999988653 467899999999999998 688899999
Q ss_pred CcEEEEeCCCcc
Q 010784 413 LRINIWETDTGM 424 (501)
Q Consensus 413 g~i~iwd~~~~~ 424 (501)
|+|++|++.+..
T Consensus 322 ~~v~~w~v~~~~ 333 (344)
T 4gqb_B 322 HQVVHHVVPTEP 333 (344)
T ss_dssp SCEEEEECCC--
T ss_pred CeEEEEECCCCC
Confidence 999999998654
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=295.61 Aligned_cols=278 Identities=21% Similarity=0.288 Sum_probs=217.4
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-C--ceeeec-cC-CCCceEEEEeeec
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-G--SCQRCF-KG-HNGPVSTLSDKLL 217 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~--~~~~~~-~~-h~~~v~~l~~s~~ 217 (501)
+.+..+.+|.+.|++++|+| + +|++|+.||+|++|| . + ..+..+ .+ |...|.+++|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~-------------~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 67 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQ-------------G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-- 67 (330)
T ss_dssp EEEEEEECCSSCEEEEEEET-------------T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC--
T ss_pred ccceeeccCCCceeeeccCC-------------C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC--
Confidence 56778899999999999998 4 999999999999999 2 2 344555 34 99999999997
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
|++++|++|+.|++|++||+...... ....+...+.+|...|.+++|+| ++++|++|+.|+.|++||++....
T Consensus 68 --p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~--- 141 (330)
T 2hes_X 68 --PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGE--- 141 (330)
T ss_dssp --TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCC---
T ss_pred --CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCC---
Confidence 88999999999999999999643210 11235677889999999999998 788999999999999999954311
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
..+.+..+.+|...|.+++|+|++.+|++++.|+ |++||...
T Consensus 142 -------------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 142 -------------------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp -------------------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred -------------------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 1123456778999999999999999999999998 99999876
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCc--------ccccccccCCCCCCCcceeee
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTG--------MLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~ 444 (501)
+. .+++..+.+|.+.|.+++|+|+ .++++|+.|++|++||+.++ .+...+. ..|...|.++
T Consensus 185 ~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~v 256 (330)
T 2hes_X 185 DD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP----DVHKRQVYNV 256 (330)
T ss_dssp TE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC----SCCSSCEEEE
T ss_pred CC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc----cccccceEEE
Confidence 52 1245788999999999999997 57888899999999999765 2333332 2378899999
Q ss_pred EeeccccEEEEeecCCCceEEEeeccCC---------------------------ccceeecCCCCceeeecccC
Q 010784 445 AMAVSGCRIVTASYGEPGLLQFRDFSNA---------------------------TCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~---------------------------~~~~~s~~~d~~~~~w~~~~ 492 (501)
+|++++ +|++++ .||.|++|+...+ +..+++++.|+.+++|+++.
T Consensus 257 ~~s~~~-~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 257 AWGFNG-LIASVG--ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EECTTS-CEEEEE--TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCC-EEEEEe--CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999765 889998 6699999985422 23467899999999999864
No 46
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=297.12 Aligned_cols=293 Identities=14% Similarity=0.185 Sum_probs=253.1
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+..|..+|++++|+|++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+| ++++|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s 91 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDC-------------FTKYCVT 91 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSSEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcC-------------CCCEEEE
Confidence 567778999999999999999999999999999999985 88889999999999999999 8899999
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-----CcEEEEeccCCCcccc-----ccce
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED-----ATVRLWSLSSSGKRGQ-----QALK 251 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~-----~~~~ 251 (501)
++.||.|++|| +++.+..+. |...|.+++|+ ++++++++++.+ |.|++||+........ ....
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~----~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFS----PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEEC----TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEc----cCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 99999999999 677777777 88999999997 899999999999 9999999987643111 1123
Q ss_pred eeccCCCC--ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 252 ATLYGHEK--PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 252 ~~~~~~~~--~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
..+..|.. .+.+++|+| ++.+|++++.||.|++||+++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------------------------- 208 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNY------------------------------------- 208 (369)
T ss_dssp EEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTT-------------------------------------
T ss_pred eeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCc-------------------------------------
Confidence 44555666 899999998 78899999999999999998731
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT 407 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~ 407 (501)
+.+..+..|...|.+++|+|++.+|++++.|+ |++||+++++.. ..+. +...+.+++|+|+ ++++
T Consensus 209 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 209 ------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL------KKYE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------EEEE-CSSCEEEEEECSSSSEEE
T ss_pred ------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee------eeec-CCCCceeEEecCCCceEE
Confidence 23345666889999999999999999999888 999999987654 5555 6788999999999 8888
Q ss_pred EecCCC--------------cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 408 GGRDDL--------------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 408 ~gs~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+++.++ .+++||..+++.+..+ .+|...|.+++|+|++++|++++ .||.|++|++..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-----QGHFGPLNTVAISPQGTSYASGG--EDGFIRLHHFEKSY 348 (369)
T ss_dssp EEECCC-------------CEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEECHHH
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-----ecccCcEEEEEECCCCCEEEEEc--CCCeEEEEECcccc
Confidence 877887 8999999999999988 56788999999999999999999 66999999998644
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-39 Score=312.40 Aligned_cols=294 Identities=16% Similarity=0.143 Sum_probs=227.6
Q ss_pred eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
.....+...|+||+|+| ++.+||+|+.||.|+|||+.++. .....+.+|.+.|++|+|+|. ++++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~------------~~~~l 180 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL------------NTNQF 180 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS------------CTTEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC------------CCCEE
Confidence 34556777899999998 56799999999999999998652 234456799999999999984 67899
Q ss_pred EEeeCCCceEEec-CCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 182 VTSSCDHSIRLWW-KGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+||+.||+|++|| .+.....+. .+...+.+++|+ +++.+|++|+.||.|++||++.. .+..+.+|
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~~~h 249 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS----ASSRMVVTGDNVGNVILLNMDGK-------ELWNLRMH 249 (435)
T ss_dssp EEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE----TTTTEEEEECSSSBEEEEESSSC-------BCCCSBCC
T ss_pred EEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC----CCCCEEEEEeCCCcEeeeccCcc-------eeEEEecc
Confidence 9999999999999 544444433 334567889997 89999999999999999999754 36778899
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
...|.+++|+|.+..++++|+.|+.|++||+++.+....
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----------------------------------------- 288 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----------------------------------------- 288 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-----------------------------------------
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccccce-----------------------------------------
Confidence 999999999986677899999999999999987643211
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc------CeEEEEecCC-eEEEE-
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG------SVTQLHMDPY-KIVTG- 408 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~-~~l~~- 408 (501)
.....+|...|++++|+|+|.+|++++.|+ |++||+++++.. ..+..|.. .+....|+|. .++++
T Consensus 289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP------LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE------EEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc------eEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 112345889999999999999999999998 999999987654 33333221 1223345554 33332
Q ss_pred -----------ecCCCcEEEEeCCCcccccccccCCCCCCCcceeee-EeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 409 -----------GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS-AMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 409 -----------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+..++.|++||..+++.+..+. .+|...|.++ +|+|+|++|++|+ |+.|++|++..+..
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~----~~~~~~v~s~~~fspdg~~lasg~---d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY----DPESSGISSLNEFNPMGDTLASAM---GYHILIWSQQEART 433 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC----CSSCCCCCCEEEECTTSSCEEEEC---SSEEEECCCC----
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe----CCCCCcEEEEEEECCCCCEEEEEc---CCcEEEEECCcCee
Confidence 2345679999999999988874 4567778877 6999999999875 37899999987754
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-38 Score=299.89 Aligned_cols=314 Identities=12% Similarity=0.094 Sum_probs=251.0
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
..+..+|++++|+|++.++++|+.++.|++||+.++ + ....+.+|...|++++|+| ++++|+++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~~~ 70 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAP-------------DSNRIVTC 70 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEET-------------TTTEEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeC-------------CCCEEEEE
Confidence 346788999999999999999999999999999875 4 7888999999999999999 88999999
Q ss_pred eCCCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 185 SCDHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
+.||.|++|| .++.. ..+..|...|.+++|+ +++++|++|+.||.|++||++.+.. ..........|...
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA----PNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRST 144 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC----TTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSC
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC----CCCCEEEEEeCCCEEEEEEecCCCc--ceeeeeeecccCCC
Confidence 9999999999 44433 3446799999999997 8899999999999999999998652 00112334678999
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
|.+++|+| ++.+|++++.||.|++||++......... ..... .....++.+..
T Consensus 145 i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~------------------~~~~~~~~~~~ 197 (372)
T 1k8k_C 145 VLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPA--------PTPWG------------------SKMPFGELMFE 197 (372)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCC--------CBTTB------------------SCCCTTCEEEE
T ss_pred eeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccccc--------ccccc------------------cccchhhheEe
Confidence 99999998 78899999999999999987543211000 00000 01223456677
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw 418 (501)
+..|...|.+++|+|++++|++++.|+ |++||+++++.+ ..+..|...|++++|+|+ .++++| .|+.|++|
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV------ATLASETLPLLAVTFITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE------EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee------EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEE
Confidence 778999999999999999999999998 999999986654 788899999999999999 888887 99999999
Q ss_pred eCCC--cc--cccccc--------------------------------cCCCCCCCcceeeeEee-ccc---cEEEEeec
Q 010784 419 ETDT--GM--LANSLL--------------------------------CNYPEEADISTGCSAMA-VSG---CRIVTASY 458 (501)
Q Consensus 419 d~~~--~~--~~~~~~--------------------------------~~~~~~~~~~v~~~~~s-~~g---~~l~s~~~ 458 (501)
++.+ ++ .+..+. .....+|...|++++|. ++| ++|++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~- 349 (372)
T 1k8k_C 271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG- 349 (372)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE-
T ss_pred EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec-
Confidence 9987 42 111110 11114788999999966 666 9999999
Q ss_pred CCCceEEEeeccCCccce
Q 010784 459 GEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 459 d~~g~i~~w~~~~~~~~~ 476 (501)
.||.|++|++..++..+
T Consensus 350 -~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 350 -MDGGMSIWDVRSLESAL 366 (372)
T ss_dssp -TTSEEEEEEHHHHHHHC
T ss_pred -CCCceEEEEecChhHhh
Confidence 66999999998766543
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.9e-39 Score=350.34 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=289.9
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.+...+.+++|+|++.++++|+.++.+++|++.++ .....+.+|.+.|++++|+| ++++|++++.|
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-------------dg~~l~s~s~d 903 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSP-------------DGSSFLTASDD 903 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-------------TSSEEEEEETT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECC-------------CCCEEEEEeCC
Confidence 56777999999999999999999999999999985 78888999999999999999 89999999999
Q ss_pred CceEEec-CC-ce-----------------------------ee--------eccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 188 HSIRLWW-KG-SC-----------------------------QR--------CFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 188 g~i~vwd-~~-~~-----------------------------~~--------~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
|+|++|| .. .. +. ....+...+.+++|+ ++++++++|
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----p~g~~l~~g 979 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS----PHLEYVAFG 979 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC----TTSSEEEEE
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc----CCCCEEEEE
Confidence 9999998 11 00 00 001235678999997 899999999
Q ss_pred eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+.||.|++||+.++. ....+.+|...|++++|+| ++.++++++.||.|++||+.+++... .......
T Consensus 980 ~~~g~i~i~d~~~~~------~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~ 1046 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNR------VFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF------LQAHQET 1046 (1249)
T ss_dssp ETTSCCEEEETTTTS------CEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEEC------CBCCSSC
T ss_pred cCCCCEEEEEcCCCc------eeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEE------EecCCCc
Confidence 999999999999876 4778889999999999998 78899999999999999999885432 2245566
Q ss_pred ceeeecCCCeEEEEe--CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc
Q 010784 309 PVDMKCHESMLYIAS--GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM 385 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 385 (501)
+.++.+.++..+++. ++.+++||+.+++....+.+|.+.|.+++|+|+++++++++.|+ |++||+.+++..
T Consensus 1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~------ 1120 (1249)
T 3sfz_A 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL------ 1120 (1249)
T ss_dssp EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS------
T ss_pred EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee------
Confidence 677777776655554 45999999999999999999999999999999999999999998 999999987654
Q ss_pred ccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC----CCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 386 AELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN----YPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 386 ~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+... ....|...|++++|+|||++|++++
T Consensus 1121 ~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--- 1197 (1249)
T 3sfz_A 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--- 1197 (1249)
T ss_dssp BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---
T ss_pred eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---
Confidence 888899999999999999 99999999999999999999887765211 1135788899999999999999885
Q ss_pred CceEEEeeccC---------------------CccceeecCCCCceeeeccc
Q 010784 461 PGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 461 ~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~~ 491 (501)
|.|++||+.. ++..+++++.||.+.+|++.
T Consensus 1198 -g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1198 -GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred -CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 7999999553 33457788899999999874
No 50
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-38 Score=288.25 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=226.9
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.....++.+|.+.|++++|+| ++++|++|+.||.|++|+ .++....+.+|...|.+++|+ +
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~-------------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~----~ 75 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSP-------------NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS----S 75 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----T
T ss_pred ceeEEEEcccCCcEEEEEECC-------------CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc----C
Confidence 356677899999999999999 899999999999999999 677888899999999999997 8
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
++++|++|+.||.|++||+.++. .+..+.+|...|.++.|+| ++++|++|+.|+.|++||+++++.
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~------- 141 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGK------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC------- 141 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-------
T ss_pred CCCEEEEECCCCEEEEEECCCCc------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-------
Confidence 99999999999999999999876 4788899999999999998 788999999999999999987642
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
+..+..|...|.+++|+|+++++++++.|+ |++||+++++..
T Consensus 142 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 184 (312)
T 4ery_A 142 -------------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184 (312)
T ss_dssp -------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred -------------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 345566889999999999999999999998 999999987643
Q ss_pred CCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 380 VKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 380 ~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
..+ ..+...+..++|+|+ +++++++.||.|++||+.+++.+..+..+... ...+......+++.+|++|+
T Consensus 185 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 185 ------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp ------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS--SSCCCEEEECSSSCEEEECC
T ss_pred ------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc--eEEEEEEEEeCCCcEEEEEC
Confidence 333 355678999999999 88888899999999999999998888543211 11222223346789999999
Q ss_pred cCCCceEEEeeccCC---------------------ccceeecC--CCCceeeecccC
Q 010784 458 YGEPGLLQFRDFSNA---------------------TCPVLKHE--VQNDSKFWGPQC 492 (501)
Q Consensus 458 ~d~~g~i~~w~~~~~---------------------~~~~~s~~--~d~~~~~w~~~~ 492 (501)
.||.|++||+..+ ...+++++ .|+.+++|+.++
T Consensus 257 --~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d~ 312 (312)
T 4ery_A 257 --EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312 (312)
T ss_dssp --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECCC
T ss_pred --CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCCC
Confidence 6699999996543 33455554 799999998753
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-38 Score=300.17 Aligned_cols=290 Identities=14% Similarity=0.101 Sum_probs=235.3
Q ss_pred eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccccccceecc--cCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSESYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
...+..+...|++++|++++ .++++|+.|+.|++||+.++ +....+. +|.+.|.+++|+|+ +++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~------------~~~ 132 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQF------------NTN 132 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETT------------EEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCC------------CCC
Confidence 34566788889999999999 99999999999999999975 5555544 79999999999984 468
Q ss_pred EEEEeeCCCceEEec-CCceeeeccC---CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 180 VLVTSSCDHSIRLWW-KGSCQRCFKG---HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd-~~~~~~~~~~---h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+|++++.||.|++|| .+..+..+.. |...|.+++|+ +++++|++|+.||.|++||++ +. .+..+.
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~i~d~~-~~------~~~~~~ 201 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS----VSRQMLATGDSTGRLLLLGLD-GH------EIFKEK 201 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE----TTTTEEEEEETTSEEEEEETT-SC------EEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC----CCCCEEEEECCCCCEEEEECC-CC------EEEEec
Confidence 999999999999999 5566666544 45889999998 899999999999999999994 33 477888
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
+|...|.+++|+|.+..++++++.|+.|++||+++.+.. +
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------~ 241 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------------------------------------N 241 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------------------------------------T
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------------------------------------c
Confidence 999999999999844449999999999999999875321 1
Q ss_pred ceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------c----------cCeE
Q 010784 336 QKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------V----------GSVT 396 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~----------~~v~ 396 (501)
..+..+ .|...|.+++|+| ++.+|++++.|+ |++||+++++.. ..+.+| . +.+.
T Consensus 242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP------DQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC------SEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc------cccccccccccccccceEEeccCCCCce
Confidence 122233 5889999999999 999999999888 999999987654 333322 2 3444
Q ss_pred EEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 397 QLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
.++++|+ ++ +|+.||.|++||+.+++.+.++..+ .+...+..++|+|+|++|++|+ | |.|++|+++.
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~---~~~~~~~~~~~s~~g~~l~s~s-d--~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP---NAAGIISLNKFSPTGDVLASGM-G--FNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT---TBCSCCCEEEECTTSSEEEEEE-T--TEEEEEECC-
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC---CCCceEEEEEEecCccEEEEec-C--CcEEEEecCC
Confidence 5667777 55 6679999999999999999988532 2456778889999999999996 4 9999999874
No 52
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-38 Score=320.59 Aligned_cols=333 Identities=14% Similarity=0.168 Sum_probs=255.5
Q ss_pred EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCc-Cc
Q 010784 105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRT-EN 179 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~-~~ 179 (501)
.+..+...|++++|+|++. ++++|+.|+.+++||..++ +....+.+|.+ .|++++|+| + ++
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~ 220 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSP-------------DSGE 220 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECS-------------TTCC
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECC-------------CCCC
Confidence 3445677799999999998 8999999999999999985 88889999999 999999999 7 89
Q ss_pred EEEEeeCCCceEEec--CCceeeec-c---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc------
Q 010784 180 VLVTSSCDHSIRLWW--KGSCQRCF-K---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ------ 247 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd--~~~~~~~~-~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------ 247 (501)
+|++++.||.|++|| +++.+..+ . .|...|.+++| . ++++|++++.||.|++||+.+++....
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~----~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW----L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE----S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE----c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 999999999999999 67778888 6 89999999999 3 788999999999999999986542000
Q ss_pred ---------------------------------ccceeeccCCCCceeEEEEeec-------------------------
Q 010784 248 ---------------------------------QALKATLYGHEKPIKLMSVAGH------------------------- 269 (501)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~v~~l~~~~~------------------------- 269 (501)
...+..+.+|...|.+++| |+
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~ 374 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNL 374 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCc
Confidence 1122333444444544444 31
Q ss_pred -------CCeEEEEEeCCCeEEEEECCCCcccc----------------------------ceecccceecCCCceeeec
Q 010784 270 -------KSFLLVTISKDSKVRVWDTSTSSAVR----------------------------SSCCVGMTSVPGVPVDMKC 314 (501)
Q Consensus 270 -------~~~~l~s~s~dg~v~vwd~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 314 (501)
++..+++++.|+.|++||+.+++... .............+.++.+
T Consensus 375 v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred eEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 12334444444444444443221100 0000011122333444555
Q ss_pred CCCeEEEEe--CCcEEEEEcCCCceE-eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784 315 HESMLYIAS--GSSVVTIDLRTMQKV-MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 315 ~~~~~~~~~--~~~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
++..++.+. ++.+++||+.+++.. ..+..|...|.+++|+|++++|++++.|+ |++||+.+++.. ..+.+
T Consensus 455 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~------~~~~~ 528 (615)
T 1pgu_A 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK------TSRWA 528 (615)
T ss_dssp CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------ECCSC
T ss_pred cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce------eEeec
Confidence 555555555 468999999988766 67778999999999999999999999988 999999987654 67777
Q ss_pred -cccCeEEEEecC----------C-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 391 -HVGSVTQLHMDP----------Y-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 391 -h~~~v~~l~~~~----------~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
|...|++++|+| + +++++++.||.|++||+.++ +++..+ .+|...|.+++|+|+++ |++++
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----NAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----TSSTTCEEEEEEEETTE-EEEEE
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-----hcCccceEEEEEcCCCC-eEEec
Confidence 999999999999 8 99999999999999999997 777777 57788999999999999 99999
Q ss_pred cCCCceEEEeeccC
Q 010784 458 YGEPGLLQFRDFSN 471 (501)
Q Consensus 458 ~d~~g~i~~w~~~~ 471 (501)
.||.|++|++..
T Consensus 603 --~d~~v~iw~~~~ 614 (615)
T 1pgu_A 603 --ADACIKRWNVVL 614 (615)
T ss_dssp --TTSCEEEEEEC-
T ss_pred --CCceEEEEeeec
Confidence 669999999875
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-38 Score=287.60 Aligned_cols=260 Identities=19% Similarity=0.189 Sum_probs=211.8
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C---CceeeeccCCCCceEEEEeeecCCCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K---GSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~---~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..+.+|.+.|++++|+| +|++|++|+.|++|+||| . .+.+.++.+|.++|.+++|++ +.+
T Consensus 2 ~~~~~~h~~~V~~~~~s~-------------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~--~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDY-------------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH--PKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECT-------------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECC--GGG
T ss_pred ceeccCCcCceEEEEECC-------------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecC--CCc
Confidence 346789999999999999 899999999999999998 2 356788999999999999962 124
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
+++|++|+.||+|++||+.++.. ..+..+.+|...|.+++|+|+. +.+|++++.|+.|++||++++...
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~------ 136 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT------ 136 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB------
T ss_pred CCEEEEEcCCCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce------
Confidence 78999999999999999987641 1356677899999999999842 679999999999999999875311
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-------------CcEEEEEcCCc
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-------------KSLICTGGIGK 367 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-------------~~~l~~~~~d~ 367 (501)
....+.+|...|.+++|+|+ +++|++|+.|+
T Consensus 137 ------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 137 ------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp ------------------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred ------------------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence 01234568889999999996 57999999998
Q ss_pred -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCccc--c-cccccCCCCCCCc
Q 010784 368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGML--A-NSLLCNYPEEADI 439 (501)
Q Consensus 368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~--~-~~~~~~~~~~~~~ 439 (501)
|++||+++++.. ......+.+|...|++++|+|+ .++++++.|++|++||+.++.. . ..+. ...|..
T Consensus 181 ~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~---~~~~~~ 255 (297)
T 2pm7_B 181 LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK---EEKFPD 255 (297)
T ss_dssp CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS---SSCCSS
T ss_pred cEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee---cccCCC
Confidence 999999876532 1234678899999999999996 7899999999999999987431 1 1121 134677
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.|.+++|+|+|++|++++ .|+.|++|+....+
T Consensus 256 ~v~~~~~s~~g~~las~~--~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSG--GDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEEEECSSSCCEEEEE--TTSCEEEEEECTTS
T ss_pred cEEEEEECCCCCEEEEEc--CCCcEEEEEECCCC
Confidence 899999999999999999 66999999987543
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=302.37 Aligned_cols=265 Identities=14% Similarity=0.111 Sum_probs=208.3
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
+..+..+|++++|+|++.++++|+.|+.|++|++.++. +....+.+|.+.|++++|+| ++++|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~ 73 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-------------KSNRIVTC 73 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-------------TTCCEEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-------------CCCEEEEE
Confidence 34456789999999999999999999999999999743 67888999999999999999 88999999
Q ss_pred eCCCceEEec--CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-CC
Q 010784 185 SCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-HE 258 (501)
Q Consensus 185 ~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~ 258 (501)
+.||+|++|| .+. ....+.+|...|.+++|+ +++++|++|+.|+.|++||++++.. ......+.. |.
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~ 146 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS----PNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLR 146 (377)
T ss_dssp ETTSSEEEC------CCCCEEECCCCSSCEEEEECC----TTSSCCEEEESSSCEEECCC--------CCCCEEECSSCC
T ss_pred eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC----CCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccC
Confidence 9999999999 433 567778899999999997 7899999999999999999988652 113556666 99
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
..|.+++|+| ++.+|++++.|+.|++||++.......... ...+. .+..++.+
T Consensus 147 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~----------------------~~~~~~~~ 199 (377)
T 3dwl_C 147 STILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEA----SVWGS----------------------RLPFNTVC 199 (377)
T ss_dssp SCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCS----CSSCS----------------------CCCEEEEE
T ss_pred CCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccc----ccccc----------------------ccchhhhh
Confidence 9999999998 788999999999999999976542111000 00000 00123445
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
..+ .|...|.+++|+|++++|++++.|+ |++||+++++.. ...+..+.+|...|.+++|+|+ +++++|+.++.+
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 275 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP--PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI- 275 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC--EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc--ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-
Confidence 556 7899999999999999999999988 999999997652 1124788899999999999999 999998665555
Q ss_pred EEeCC
Q 010784 417 IWETD 421 (501)
Q Consensus 417 iwd~~ 421 (501)
+|+..
T Consensus 276 ~~~~~ 280 (377)
T 3dwl_C 276 LLQGN 280 (377)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 77665
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-39 Score=311.86 Aligned_cols=328 Identities=11% Similarity=0.081 Sum_probs=233.4
Q ss_pred EecCCCCceEEeeCCc---------EEEee-------------------cCCeeeEEEEeccccccc---ceecccCCcc
Q 010784 107 YSVAKPHDHILLDNND---------IFSTQ-------------------GSSIQNIKIDNFLSESYY---RATLSDHKAR 155 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~---------~~~~~-------------------g~~d~~i~vw~~~~~~~~---~~~~~~h~~~ 155 (501)
+..+.+|.+|+|+|++ .++|+ |+.|++|+||++.++... ..++.+|.+.
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~ 209 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE 209 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCS
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc
Confidence 3356779999999876 66666 557899999999875221 2446788899
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce-----------eeeccCCCCceEEEEeeecCCCCC
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC-----------QRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~-----------~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
|++++|+|.+ ..++++.+||+|+.||+|+||| .+.. ...+.+|...|++++|+ ++
T Consensus 210 V~~v~wsp~~-------~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s----~~- 277 (524)
T 2j04_B 210 VWDLKWHEGC-------HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL----SP- 277 (524)
T ss_dssp EEEEEECSSC-------CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES----SS-
T ss_pred EEEEEECCCC-------CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec----CC-
Confidence 9999999931 1122468999999999999999 2321 23677899999999996 33
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE--EeecCC-eEEEEEeCCCeEEEEECCCCccccceec
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS--VAGHKS-FLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
..|++|+.||+|++||++++.. +...+.+|...|.+++ +++ ++ .+|++|+.|++|++||+++++.......
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred CeEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence 5899999999999999997643 4566889999999994 454 55 8999999999999999998765332210
Q ss_pred ccceecCCCceeeecCCCe-EEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 300 VGMTSVPGVPVDMKCHESM-LYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
......+.++.++++. .+++++ +.|++||++++..+..+.+|.+.|++++|+|++.+|++|+.|+ |++||+..
T Consensus 352 ---~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 352 ---RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ---ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ---ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 0111235567777754 333332 3799999999998888999999999999999999999999999 99999865
Q ss_pred CCCCCCCCCcccccC-----cccCeEEEEecCC-eEEEEecCCCcEEEEeCC-CcccccccccCCCCCCCcceeeeEeec
Q 010784 376 SQDAVKPQPMAELDG-----HVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
. . +..+.. +...|.+++|+|+ .++.. ..+ +++|+.. ++..+.++ .+|...|.+++|+|
T Consensus 429 ~-~------~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l-----~gh~~~V~~Vafsp 493 (524)
T 2j04_B 429 R-L------LHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKI-----DAHGINITCTKWNE 493 (524)
T ss_dssp S-T------TTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC------------------CCCSCCCEEECC
T ss_pred h-h------ccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeee-----cCCCceEEEEECCC
Confidence 3 1 122211 1225779999998 65533 222 3444443 46677777 56788999999999
Q ss_pred ccc---EEEEeecCCCceEEEeeccCC
Q 010784 449 SGC---RIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 449 ~g~---~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++. ++++|+ .+|.|+||++.-.
T Consensus 494 ~~~~~~~lAsg~--~~g~vrlw~l~~~ 518 (524)
T 2j04_B 494 TSAGGKCYAFSN--SAGLLTLEYLSLE 518 (524)
T ss_dssp STTTTTEEEEEC--TTSEEEEEECSCC
T ss_pred CCCccHHHHhhc--cCceEEEEEcccc
Confidence 964 999998 6699999998753
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-38 Score=287.91 Aligned_cols=283 Identities=15% Similarity=0.189 Sum_probs=241.9
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
....+..|..+|+++++ +++.++++|+.|+.|++||+.++ +....+..|.+.|.+++|+| ++++|
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-------------~~~~l 74 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDS-------------EKELL 74 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEET-------------TTTEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECC-------------CCCEE
Confidence 34567778889999999 89999999999999999999874 77888899999999999999 89999
Q ss_pred EEeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 182 VTSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 182 ~s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++|+.||.|++|+ ..+.+..+.+|...|.++.| +++++++|+.||.|++|| .+. ....+..
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~~~d~~i~~~d--~~~------~~~~~~~ 140 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF------QDGVVISGSWDKTAKVWK--EGS------LVYNLQA 140 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE------ETTEEEEEETTSEEEEEE--TTE------EEEEEEC
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe------cCCEEEEEeCCCCEEEEc--CCc------EEEeccc
Confidence 9999999999998 33557788899999999998 356999999999999999 222 4677888
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|...+.++.+.+.+++.+++++.||.|++||....
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------------------------------------- 175 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--------------------------------------------- 175 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------------------------------------
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------------------------------------
Confidence 99999999999877889999999999999993321
Q ss_pred eEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCc
Q 010784 337 KVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLR 414 (501)
Q Consensus 337 ~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~ 414 (501)
...+.. |...+.+++|+|++. +++++.++ |++||+++++.. ..+.+|...|++++|+|+..+++++.||.
T Consensus 176 -~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~~~~~dg~ 247 (313)
T 3odt_A 176 -IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL------RTYEGHESFVYCIKLLPNGDIVSCGEDRT 247 (313)
T ss_dssp -EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECTTSCEEEEETTSE
T ss_pred -EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh------hhhhcCCceEEEEEEecCCCEEEEecCCE
Confidence 223333 788999999999998 78888887 999999986654 88889999999999999933556679999
Q ss_pred EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
|++||+.+++.+..+ ..|...|.+++|+|+++ +++++ .||.|++|++..+..
T Consensus 248 v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~--~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 248 VRIWSKENGSLKQVI-----TLPAISIWSVDCMSNGD-IIVGS--SDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEECTTTCCEEEEE-----ECSSSCEEEEEECTTSC-EEEEE--TTSCEEEEESCGGGC
T ss_pred EEEEECCCCceeEEE-----eccCceEEEEEEccCCC-EEEEe--CCCcEEEEeCCCCce
Confidence 999999999999988 45677899999999998 55677 669999999987654
No 57
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-37 Score=290.94 Aligned_cols=274 Identities=15% Similarity=0.226 Sum_probs=218.8
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C--------CceeeeccCCCCceEEEEe
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K--------GSCQRCFKGHNGPVSTLSD 214 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~--------~~~~~~~~~h~~~v~~l~~ 214 (501)
.....+.+|.+.|++++|.+.. ...+++++|++|+.|++|++|| . +.....+.+|...|.+++|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~-------~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQ-------KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCS-------STTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE
T ss_pred eeeeeeccchhhhhheeeEEEe-------ecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE
Confidence 5567889999999999993200 0001789999999999999998 2 2345678899999999999
Q ss_pred eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784 215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294 (501)
Q Consensus 215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 294 (501)
+ +++.++++|+.|++|++||+.++. .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+......
T Consensus 85 ~----~~~~~l~s~s~D~~v~lwd~~~~~------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~ 153 (343)
T 2xzm_R 85 S----QENCFAISSSWDKTLRLWDLRTGT------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKF 153 (343)
T ss_dssp C----SSTTEEEEEETTSEEEEEETTSSC------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEE
T ss_pred C----CCCCEEEEEcCCCcEEEEECCCCc------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCcee
Confidence 7 889999999999999999999876 4778899999999999998 7889999999999999998743110
Q ss_pred cceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----------cEEEEEc
Q 010784 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----------SLICTGG 364 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----------~~l~~~~ 364 (501)
. ......|...|.+++|+|++ .++++++
T Consensus 154 ~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 154 S------------------------------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp E------------------------------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred e------------------------------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 0 01123578889999999986 7899999
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcce
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADIST 441 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v 441 (501)
.|+ |++||.. .+ ....+.+|...|++++|+|+ ++|++|+.||.|++||+.+ ......+ .+...|
T Consensus 192 ~d~~i~iwd~~-~~------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------~~~~~v 258 (343)
T 2xzm_R 192 WDGRLKVWNTN-FQ------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------DAGSTI 258 (343)
T ss_dssp TTSEEEEEETT-TE------EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------ECSSCE
T ss_pred CCCEEEEEcCC-Cc------eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee------cCCCcE
Confidence 888 9999943 22 24678899999999999999 9999999999999999954 3344443 134569
Q ss_pred eeeEeeccccEEEEeecCCCceEEEeeccCC----------------------------------ccceeecCCCCceee
Q 010784 442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNA----------------------------------TCPVLKHEVQNDSKF 487 (501)
Q Consensus 442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~----------------------------------~~~~~s~~~d~~~~~ 487 (501)
.+++|+|+++++++++ ++.|++|++... +..+++|+.|+.+++
T Consensus 259 ~~v~~sp~~~~la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 259 NQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp EEEEECSSSCEEEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred EEEEECCCCCEEEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence 9999999999887653 478999986432 234678899999999
Q ss_pred ecccCC
Q 010784 488 WGPQCY 493 (501)
Q Consensus 488 w~~~~~ 493 (501)
|++..+
T Consensus 336 w~~~~g 341 (343)
T 2xzm_R 336 FSFETS 341 (343)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 998654
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=298.96 Aligned_cols=302 Identities=12% Similarity=0.134 Sum_probs=235.8
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEecC------Cc------e
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWWK------GS------C 198 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd~------~~------~ 198 (501)
..+.+|+++.. ........|.+.|++++|+| +++ +|++|+.||.|++||. ++ .
T Consensus 25 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 90 (425)
T 1r5m_A 25 SIDSSDDLDGF-VKILKEIVKLDNIVSSTWNP-------------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTI 90 (425)
T ss_dssp ---------CC-CEECEEEEECSCCSEEEECS-------------SCTTEEEEEETBTEEEEEEEEEC------CEEEEE
T ss_pred cccccccchhh-hhheeeeeccCceEEEEECC-------------CCCcEEEEecCCceEEEEEEecccCCccccccccc
Confidence 44567777643 22233345669999999999 788 9999999999999984 22 2
Q ss_pred eeeccC----------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 199 QRCFKG----------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 199 ~~~~~~----------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
...+.. |...|++++|+ +++++|++|+.||.|++||. ++. ....+..|...|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~i~~~-~~~------~~~~~~~~~~~v~~~~~~~ 159 (425)
T 1r5m_A 91 IAELRHPFALSASSGKTTNQVTCLAWS----HDGNSIVTGVENGELRLWNK-TGA------LLNVLNFHRAPIVSVKWNK 159 (425)
T ss_dssp EEEEECCCCCC------CBCEEEEEEC----TTSSEEEEEETTSCEEEEET-TSC------EEEEECCCCSCEEEEEECT
T ss_pred cccccccccccccccCCCCceEEEEEc----CCCCEEEEEeCCCeEEEEeC-CCC------eeeeccCCCccEEEEEECC
Confidence 233332 68899999997 89999999999999999993 333 4778889999999999998
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccce----------ecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCc
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT----------SVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQ 336 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~ 336 (501)
++.+|++++.|+.|++||+.+++.+......... .....+.++.+.++..+++.+ +.+.+||+++++
T Consensus 160 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 160 -DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp -TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS
T ss_pred -CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc
Confidence 7889999999999999999988665433221110 001115556666665555544 489999999999
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcE
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRI 415 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i 415 (501)
.+..+..|...|.+++|+|++++|++++.++ |++||+++++.. ..+.+|...|.+++|+|+.++++++.||.|
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i 312 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ------NCFYGHSQSIVSASWVGDDKVISCSMDGSV 312 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS------EEECCCSSCEEEEEEETTTEEEEEETTSEE
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc------eEecCCCccEEEEEECCCCEEEEEeCCCcE
Confidence 9999999999999999999999999999888 999999987654 788889999999999999566666799999
Q ss_pred EEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++||+.+++.+..+ ..|...+.+++|+|++++|++++ .+|.|++|++..+
T Consensus 313 ~i~d~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 313 RLWSLKQNTLLALS-----IVDGVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKKL 362 (425)
T ss_dssp EEEETTTTEEEEEE-----ECTTCCEEEEEECTTSSEEEEEE--TTSCEEEEECHHH
T ss_pred EEEECCCCcEeEec-----ccCCccEEEEEEcCCCCEEEEEE--CCCeEEEEECCCC
Confidence 99999999998888 45677899999999999999999 6699999997643
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.5e-38 Score=295.51 Aligned_cols=320 Identities=11% Similarity=0.133 Sum_probs=242.8
Q ss_pred EecCCCCceEEeeCC----cEEEeecCCeeeEEEEecccccccceeccc-----CCcceeEEEeeccCcCcccccCCCCc
Q 010784 107 YSVAKPHDHILLDNN----DIFSTQGSSIQNIKIDNFLSESYYRATLSD-----HKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~----~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-----h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
..|..+|++++|+|+ ...+++++.++.|++|+..++ +.+..+.. |...|++++|+|++. ++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~ 84 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSN---------TS 84 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTT---------TC
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCC---------CC
Confidence 357788999999983 444555555569999999975 55555543 567899999999320 12
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+.+|++|+.||.|++|| +++.+..+.+|...|.+++|+ + ++++|++|+.||.|++||+.+++. ...+
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~ 154 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH----PRDPNLLLSVSKDHALRLWNIQTDTL------VAIF 154 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC----SSCTTEEEEEETTSCEEEEETTTTEE------EEEE
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC----CCCCCEEEEEeCCCeEEEEEeecCeE------EEEe
Confidence 67999999999999999 778888899999999999997 6 889999999999999999998763 5555
Q ss_pred ---cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 255 ---YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 255 ---~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
.+|...|.+++|+| ++.+|++++.||.|++||+++++..............+...... . ..
T Consensus 155 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~--- 218 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI-----------S-QK--- 218 (366)
T ss_dssp CSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC-----------C-EE---
T ss_pred cccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc-----------c-ee---
Confidence 68999999999998 78899999999999999999876543322110000000000000 0 00
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC--------CCCCcccccCcccCeEEEEecC
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV--------KPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
...........|...|.+++|+ ++++++++.|+ |++||+++.+... ....+..+..|...|++++|+|
T Consensus 219 -~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 219 -IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp -ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred -eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence 0011223445689999999998 77999999888 9999998865410 0123566778888999999988
Q ss_pred C---eEEEEecCCCcEEEEeCCCccccc----ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 403 Y---KIVTGGRDDLRINIWETDTGMLAN----SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 403 ~---~~l~~gs~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+ +++++|+.||.|++||+.+++... .+.. ..|...|.+++|+|++++|++++ .||.|++||+.
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 365 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH---HKCGAAIRQTSFSRDSSILIAVC--DDASIWRWDRL 365 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC---TTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc---cccCCceEEEEeCCCCCeEEEEe--CCCEEEEEEec
Confidence 6 888989999999999999987655 4421 12368999999999999999999 66999999985
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=303.38 Aligned_cols=305 Identities=11% Similarity=0.130 Sum_probs=226.8
Q ss_pred ccccCCeeeEE-EecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccc---ccccceecc-cCCcceeEEEeeccCcCcc
Q 010784 96 FKFVDPLDVCF-YSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLS---ESYYRATLS-DHKARITCMRLFPLHETSL 169 (501)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~-~h~~~V~~~~~~~~~~~~~ 169 (501)
|.........+ ..|..+|++++|+| ++.++++|+.|+.|++||+.+ +......+. +|.+.|++++|+|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------ 121 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP------ 121 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT------
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC------
Confidence 44444444555 56778899999999 999999999999999999876 321211222 6999999999999
Q ss_pred cccCCCCcCcEEEEeeCCCceEEec-----CCceeeeccC------------CCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 170 FRSEPQRTENVLVTSSCDHSIRLWW-----KGSCQRCFKG------------HNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 170 ~~~~~~~~~~~l~s~~~dg~i~vwd-----~~~~~~~~~~------------h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
++++|++|+.||+|++|| .++.+..+.. +...+.++.+.+ .+++.+|++|+.||
T Consensus 122 -------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 122 -------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV--NEEKSLLVALTNLS 192 (437)
T ss_dssp -------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE--CSSCEEEEEEETTS
T ss_pred -------CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE--cCCCCEEEEEeCCC
Confidence 889999999999999997 2333332221 455666666421 36789999999999
Q ss_pred cEEEEeccCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
.|++||+.++. .+..+.+ |...|++++|+| ++.+|++|+.||.|++||+++++.
T Consensus 193 ~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~----------------- 248 (437)
T 3gre_A 193 RVIIFDIRTLE------RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVL----------------- 248 (437)
T ss_dssp EEEEEETTTCC------EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred eEEEEeCCCCe------eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccE-----------------
Confidence 99999999876 4677777 889999999998 788999999999999999987643
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEc----CCCcEEEEEcCCc-EEEEecCCCCCCCCCC-
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIM----PSKSLICTGGIGK-AMTWDIRRSQDAVKPQ- 383 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~----~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~- 383 (501)
+..+. .|...|.+++++ |++.+|++|+.|+ |++||+++++......
T Consensus 249 ---------------------------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 249 ---------------------------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ---------------------------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred ---------------------------EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 22332 466789999555 5688999999999 9999999876330000
Q ss_pred -----Cc------------ccccC--cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCC----------
Q 010784 384 -----PM------------AELDG--HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYP---------- 434 (501)
Q Consensus 384 -----~~------------~~~~~--h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~---------- 434 (501)
.. ..+.+ |...|++++|++.+++++|+.||.|++||+.+++.+..+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (437)
T 3gre_A 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV 381 (437)
T ss_dssp SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEE
T ss_pred CCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEe
Confidence 00 01233 78889999999558888999999999999999998888854321
Q ss_pred ----------------------CCCCcceeeeEeecc--ccEEEEeecCCCceEEEee
Q 010784 435 ----------------------EEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 435 ----------------------~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~ 468 (501)
..|...|++++|+++ +.+|++|+ .||.|++|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~--~dG~I~iw~ 437 (437)
T 3gre_A 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD--NSGLIGIFQ 437 (437)
T ss_dssp ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE--TTSCEEEEC
T ss_pred ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc--CCceEEEeC
Confidence 115566666666666 55666666 446666663
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=299.15 Aligned_cols=286 Identities=15% Similarity=0.238 Sum_probs=230.9
Q ss_pred cceeEEEeeccCcCcccccCCCCcCc-EEEEe----------eCCCceEEec--CCc---eeeeccCCCCceEEEEeeec
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTEN-VLVTS----------SCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~----------~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~ 217 (501)
..|.+++|+| ++. +|++| +.||.|++|| .+. .+..+ .|...|.+++|+
T Consensus 13 ~~v~~~~~sp-------------~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s-- 76 (416)
T 2pm9_A 13 SRTATFAWSH-------------DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWS-- 76 (416)
T ss_dssp EESCBCCBCS-------------SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEEC--
T ss_pred hhcceEeeCC-------------CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEEC--
Confidence 4688889988 665 99999 8899999999 333 33333 589999999997
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-- 295 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-- 295 (501)
+++.+|++|+.||.|++||+.+... .......+.+|...|.+++|+|.++.+|++++.||.|++||+++++...
T Consensus 77 --~~~~~l~~~~~dg~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 77 --HNNKIIAGALDNGSLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp --SSSSCEEEEESSSCEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred --CCCCeEEEEccCCeEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 8999999999999999999987211 0115778889999999999998558899999999999999999876210
Q ss_pred --ceecccceecCCCceeeecCCC--eEEEEe--CCcEEEEEcCCCceEeeeccC------CCcEEEEEEcCCC-cEEEE
Q 010784 296 --SSCCVGMTSVPGVPVDMKCHES--MLYIAS--GSSVVTIDLRTMQKVMTPAIC------KPILHSFSIMPSK-SLICT 362 (501)
Q Consensus 296 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~i~~~d~~~~~~~~~~~~~------~~~v~~v~~~~~~-~~l~~ 362 (501)
.........+...+.++.++++ ..+++. ++.|++||+++++.+..+..+ ...|.+++|+|++ .++++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 0011111245567778888775 233332 348999999999998888876 7889999999996 68888
Q ss_pred EcCC----cEEEEecCCCCCCCCCCCccccc-CcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCCC
Q 010784 363 GGIG----KAMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPE 435 (501)
Q Consensus 363 ~~~d----~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 435 (501)
++.+ .|++||+++... ++..+. +|...|++++|+| + .++++++.||.|++||+.+++.+..+ .
T Consensus 233 ~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-----~ 302 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-----P 302 (416)
T ss_dssp EECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-----E
T ss_pred EECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-----c
Confidence 8865 699999998632 246777 8999999999999 6 88888899999999999999999998 5
Q ss_pred CCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccC
Q 010784 436 EADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 436 ~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~ 471 (501)
.|...|.+++|+|++ .+|++++ .|+.|++|++..
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~--~d~~i~iw~~~~ 337 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACAS--FDNKIEVQTLQN 337 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECC--SSSEEEEEESCC
T ss_pred CCCCceEEEEECCCCCCEEEEEe--cCCcEEEEEccC
Confidence 677889999999999 8999999 669999999754
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-37 Score=292.52 Aligned_cols=266 Identities=19% Similarity=0.279 Sum_probs=214.6
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCC------------------CceE
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHN------------------GPVS 210 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~------------------~~v~ 210 (501)
+|.+.|++++|+| +|++|++|+ ++++++|+ .+..+..+..|. ..|.
T Consensus 62 ~h~~~V~~v~fsp-------------dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 127 (393)
T 1erj_A 62 DHTSVVCCVKFSN-------------DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 127 (393)
T ss_dssp ECSSCCCEEEECT-------------TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE
T ss_pred CCCCEEEEEEECC-------------CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE
Confidence 6999999999999 899999987 78999998 666666665543 2489
Q ss_pred EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST 290 (501)
Q Consensus 211 ~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~ 290 (501)
+++|+ +++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 128 ~v~~s----~dg~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 128 SVCFS----PDGKFLATGAEDRLIRIWDIENRK------IVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp EEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEEEC----CCCCEEEEEcCCCeEEEEECCCCc------EEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 99997 899999999999999999999876 4778899999999999998 778999999999999999988
Q ss_pred CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-E
Q 010784 291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-A 368 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i 368 (501)
++.. ..+. +...+.+++++| ++++|++|+.|+ |
T Consensus 197 ~~~~--------------------------------------------~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 197 GQCS--------------------------------------------LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TEEE--------------------------------------------EEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CeeE--------------------------------------------EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 7431 1111 456789999999 899999999999 9
Q ss_pred EEEecCCCCCCCCC-CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc------------cccccccCCC
Q 010784 369 MTWDIRRSQDAVKP-QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM------------LANSLLCNYP 434 (501)
Q Consensus 369 ~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~------------~~~~~~~~~~ 434 (501)
++||+++++..... .......+|...|++++|+|+ +++++|+.||.|++||+.+.. +..++
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~----- 306 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY----- 306 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE-----
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-----
Confidence 99999987543000 001122578999999999999 899999999999999997643 23344
Q ss_pred CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC---------------------------ccceeecCCCCceee
Q 010784 435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA---------------------------TCPVLKHEVQNDSKF 487 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~---------------------------~~~~~s~~~d~~~~~ 487 (501)
.+|...|.+++|+|++++|++|+ .|+.|++||+..+ ...+++++.|+++++
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 46788899999999999999999 6699999996532 345779999999999
Q ss_pred ecccCC
Q 010784 488 WGPQCY 493 (501)
Q Consensus 488 w~~~~~ 493 (501)
|++...
T Consensus 385 W~~~~~ 390 (393)
T 1erj_A 385 WKYKKI 390 (393)
T ss_dssp EEEEEC
T ss_pred Cccccc
Confidence 998643
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=280.21 Aligned_cols=278 Identities=15% Similarity=0.178 Sum_probs=230.8
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.++|+||+++ +||+| .|++|+|||+.++ +.++.+ .+|...|++++|+| ++++|++|+.||+|
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~-------------~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIK-------------EGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECT-------------TSSEEEEEETTSEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECC-------------CCCEEEEEECCCcE
Confidence 5889999987 66766 4899999999986 666555 57888899999999 89999999999999
Q ss_pred EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
++|| +++++..+.+|...+.++.+ ++..+++|+.++.+++|+...... .+..+.+|...+..+.+.+
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~~------~~~~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLSW------NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEE------ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT
T ss_pred EEeecCCceeEEEecCccceEEEeec------CCCEEEEEecCCceEeeecCCCce-----eEEEEcCccCceEEEEEcC
Confidence 9999 78889999999999988875 467999999999999999988765 6778889999999999997
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
++.++++++.||.|++||+++++.... .......+.+.|
T Consensus 161 -~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------------~~~~~~~~~~~v 199 (318)
T 4ggc_A 161 -DGRHLASGGNDNLVNVWPSAPGEGGWV----------------------------------------PLQTFTQHQGAV 199 (318)
T ss_dssp -TSSEEEEEETTSCEEEEESSCBTTBSC----------------------------------------CSEEECCCCSCE
T ss_pred -CCCEEEEEecCcceeEEECCCCccccc----------------------------------------ceeeecccCCce
Confidence 788999999999999999988753211 112334567889
Q ss_pred EEEEEcCCCc-EE--EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEE-EEecCCCcEEEEeCC
Q 010784 349 HSFSIMPSKS-LI--CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIV-TGGRDDLRINIWETD 421 (501)
Q Consensus 349 ~~v~~~~~~~-~l--~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l-~~gs~dg~i~iwd~~ 421 (501)
.++.++|++. ++ ++++.++ |++||.+.... .....+...+..+.++|. .++ ++|+.|+.|++||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEecccccc-------cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 9999998754 33 3556777 99999988654 233446778999999998 333 345589999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+++++.++ .+|...|++++|+|+|++|++|+ .||.|++||+...
T Consensus 273 ~~~~~~~l-----~gH~~~V~~l~~spdg~~l~S~s--~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 273 TMAKVAEL-----KGHTSRVLSLTMSPDGATVASAA--ADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSCC
T ss_pred CCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCCC
Confidence 99999999 67889999999999999999999 6699999998654
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.3e-37 Score=293.69 Aligned_cols=278 Identities=16% Similarity=0.210 Sum_probs=233.6
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+.|+|++++ +||+|. |++|+|||..++ +....+ .+|.+.|++|+|+| +|++|++|+.||+|
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fsp-------------dg~~lasgs~Dg~v 171 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIK-------------EGNYLAVGTSSAEV 171 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECT-------------TSSEEEEEETTSCE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECC-------------CCCEEEEEECCCeE
Confidence 7899999865 677765 899999999986 555544 57888999999999 89999999999999
Q ss_pred EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
+||| +++.+..+.+|...+.++.+ ++.+|++|+.|+.+++||...... .+..+.+|...+..+.+.+
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~------~~~~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSW------NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEE------ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEee------CCCEEEEEeCCCceeEeeecccce-----eeEEecccccceeeeeecC
Confidence 9999 78889999999999999987 467999999999999999988665 6778899999999999997
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
++.++++++.|+.+++|+..+++... ..+.....|...|
T Consensus 241 -~g~~l~s~~~D~~v~i~~~~~~~~~~----------------------------------------~~~~~~~~~~~~V 279 (420)
T 4gga_A 241 -DGRHLASGGNDNLVNVWPSAPGEGGW----------------------------------------VPLQTFTQHQGAV 279 (420)
T ss_dssp -TSSEEEEEETTSCEEEEESSCCSSCS----------------------------------------CCSEEECCCSSCE
T ss_pred -CCCeeeeeeccccceEEeeccccccc----------------------------------------eeeeeecccCCce
Confidence 78899999999999999998764311 1223455688999
Q ss_pred EEEEEcCC-CcEEEEE--cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE-ecCCCcEEEEeCC
Q 010784 349 HSFSIMPS-KSLICTG--GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG-GRDDLRINIWETD 421 (501)
Q Consensus 349 ~~v~~~~~-~~~l~~~--~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~-gs~dg~i~iwd~~ 421 (501)
.+++|+|+ +.+++++ +.|+ |++||+.+++.. ..+.. ...+.++.|+|+ .++++ |+.|+.|+|||+.
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~------~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL------SAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE------EEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc------eeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 99999997 4555553 4677 999999997654 55554 457889999998 44433 4579999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+++++.++ .+|...|++++|+|||++|++|+ .|++|++||+...
T Consensus 353 ~~~~v~~l-----~gH~~~V~~l~~spdg~~l~S~s--~D~tvriWdv~~~ 396 (420)
T 4gga_A 353 TMAKVAEL-----KGHTSRVLSLTMSPDGATVASAA--ADETLRLWRCFEL 396 (420)
T ss_dssp TCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSCS
T ss_pred CCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCCC
Confidence 99999999 67889999999999999999999 6699999998654
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=290.68 Aligned_cols=332 Identities=13% Similarity=0.142 Sum_probs=236.5
Q ss_pred eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-------------ccCCcceeEEEeeccCcCcc
Q 010784 104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-------------SDHKARITCMRLFPLHETSL 169 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-------------~~h~~~V~~~~~~~~~~~~~ 169 (501)
..+..|..+|++++|+| ++.++++|+.|+.|++||+.++ .....+ .+|...|++++|+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 110 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH----- 110 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccC-----
Confidence 34455888999999999 9999999999999999999875 333333 369999999999984
Q ss_pred cccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 170 FRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 170 ~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
++++|++++.||.|++|| .+..+..+. +...+.++.|++. .+++.++++|+.||.|++||+.++.
T Consensus 111 -------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~d~~~~~---- 177 (408)
T 4a11_B 111 -------DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPV-STKHCLVAVGTRGPKVQLCDLKSGS---- 177 (408)
T ss_dssp -------CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSS-CSSCCEEEEEESSSSEEEEESSSSC----
T ss_pred -------CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecC-CCCCcEEEEEcCCCeEEEEeCCCcc----
Confidence 567999999999999999 556666665 7888999999732 2356699999999999999999876
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
....+..|...|.+++|+|.+..++++++.||.|++||++++.......... ...
T Consensus 178 --~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~------------------- 232 (408)
T 4a11_B 178 --CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH----NGK------------------- 232 (408)
T ss_dssp --CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT----TTC-------------------
T ss_pred --eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc----ccc-------------------
Confidence 4778889999999999998555579999999999999998765211100000 000
Q ss_pred EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eE
Q 010784 328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KI 405 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~ 405 (501)
...........|...|.+++|+|++++|++++.|+ |++||+.+++........................+. .+
T Consensus 233 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 233 -----KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp -----SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred -----cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 00011123356889999999999999999999888 999999987654110000000111112222333334 45
Q ss_pred EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc----------
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP---------- 475 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~---------- 475 (501)
+++ +.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++ .||.|++|++......
T Consensus 308 ~~~-~~~~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~ 379 (408)
T 4a11_B 308 VFV-PYGSTIAVYTVYSGEQITML-----KGHYKTVDCCVFQSNFQELYSGS--RDCNILAWVPSLYEPVPDDDETTTKS 379 (408)
T ss_dssp EEE-EETTEEEEEETTTCCEEEEE-----CCCSSCEEEEEEETTTTEEEEEE--TTSCEEEEEECC--------------
T ss_pred EEE-ecCCEEEEEECcCCcceeee-----ccCCCeEEEEEEcCCCCEEEEEC--CCCeEEEEeCCCCCccCCCCceEecc
Confidence 544 58999999999999999999 56788999999999999999999 6699999998765432
Q ss_pred ---------eeecCCCCceeeecccC
Q 010784 476 ---------VLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 476 ---------~~s~~~d~~~~~w~~~~ 492 (501)
..+.+.++.+++|....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------
T ss_pred ccccccceeecccCccCceeecCCcc
Confidence 22556778888886543
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-37 Score=292.74 Aligned_cols=303 Identities=11% Similarity=0.097 Sum_probs=225.0
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCC-------eeeEEEEeccccccc---------ceecccCCcceeEEEeeccCcCc
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSS-------IQNIKIDNFLSESYY---------RATLSDHKARITCMRLFPLHETS 168 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~---------~~~~~~h~~~V~~~~~~~~~~~~ 168 (501)
..+...-||.+++|+|++.+|++|+. ++.|++|++..+... ...+.+|.+.|.++++...
T Consensus 9 ~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---- 84 (365)
T 4h5i_A 9 ASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---- 84 (365)
T ss_dssp EEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT----
T ss_pred eecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC----
Confidence 34445668999999999999999864 456999998754211 1346789999999987641
Q ss_pred ccccCCCCcCcEEEEeeCCCceEEec--CC-ceee--------eccCCCCceEEEEeeecCCCCCCEEE--EeeCCCcEE
Q 010784 169 LFRSEPQRTENVLVTSSCDHSIRLWW--KG-SCQR--------CFKGHNGPVSTLSDKLLGDGSGKILA--SGGEDATVR 235 (501)
Q Consensus 169 ~~~~~~~~~~~~l~s~~~dg~i~vwd--~~-~~~~--------~~~~h~~~v~~l~~s~~~~~~~~~l~--sg~~dg~i~ 235 (501)
.+.+..+.++..|++++.|+.+++|+ .. ..+. ....+...+.+++|+ |+|++++ +++.|++|+
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS----pDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS----REGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC----TTSSCEEEEESCSSCEEE
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc----CCCCEEEEEECCCCCEEE
Confidence 11111112233444556788899997 22 1111 122355668999997 8999876 455799999
Q ss_pred EEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784 236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH 315 (501)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (501)
+||+.++.. +..+. |...|.+++|+| +++++++++.+ .+.+|+..+++...
T Consensus 161 iwd~~~~~~------~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~-------------------- 211 (365)
T 4h5i_A 161 IIDPSDLTE------KFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIA-------------------- 211 (365)
T ss_dssp EEETTTTEE------EEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEE--------------------
T ss_pred EeECCCCcE------EEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCccee--------------------
Confidence 999998763 55554 778899999998 78899998854 56777766654211
Q ss_pred CCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-----EEEEecCCCCCCCCCCCcccccC
Q 010784 316 ESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-----AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-----i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
......|...|.+++|+|++.++++++.++ +++|++...... ......+.+
T Consensus 212 ----------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~ 267 (365)
T 4h5i_A 212 ----------------------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTN 267 (365)
T ss_dssp ----------------------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--EEEEEEEES
T ss_pred ----------------------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec--ceeeeeecC
Confidence 122345778899999999999999988432 677887765432 122356778
Q ss_pred cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
|...|++++|+|+ ++||+|+.|++|+|||+.+++++.++. .+|...|++++|+|||++|++|| .|++|+||++
T Consensus 268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----~gH~~~V~~v~fSpdg~~laS~S--~D~tvrvw~i 341 (365)
T 4h5i_A 268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK----QAHSFAITEVTISPDSTYVASVS--AANTIHIIKL 341 (365)
T ss_dssp SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET----TSSSSCEEEEEECTTSCEEEEEE--TTSEEEEEEC
T ss_pred CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec----CcccCCEEEEEECCCCCEEEEEe--CCCeEEEEEc
Confidence 9999999999999 999999999999999999999998863 57889999999999999999999 6699999999
Q ss_pred cCCcc
Q 010784 470 SNATC 474 (501)
Q Consensus 470 ~~~~~ 474 (501)
.....
T Consensus 342 p~~~~ 346 (365)
T 4h5i_A 342 PLNYA 346 (365)
T ss_dssp CTTTT
T ss_pred CCCCc
Confidence 65543
No 67
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-36 Score=284.20 Aligned_cols=270 Identities=19% Similarity=0.347 Sum_probs=225.6
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-----CceeeeccCCCCceEEEEeee
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-----GSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-----~~~~~~~~~h~~~v~~l~~s~ 216 (501)
.+..+|+||.+.|++|+|+|+ ++++|+||+.||+|+||| . +.+...+.+|...|.+++|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~------------~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s- 95 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQ------------FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS- 95 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTT------------CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC-
T ss_pred EEEEEECCccCCEEEEEEeCC------------CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC-
Confidence 566789999999999999993 368999999999999998 2 23456788999999999997
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
+++++|++|+.|+.|++|+..... .......+...+..+.+.+ .+.+|++++.|+.+++||+.....
T Consensus 96 ---~dg~~l~s~~~d~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~--- 162 (340)
T 4aow_A 96 ---SDGQFALSGSWDGTLRLWDLTTGT------TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK--- 162 (340)
T ss_dssp ---TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE---
T ss_pred ---CCCCEEEEEcccccceEEeecccc------eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce---
Confidence 899999999999999999998876 3566667788888888886 778999999999999999876532
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEec
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDI 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~ 373 (501)
......+|...+..++|+++ ..++++++.|+ |++||+
T Consensus 163 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 163 ----------------------------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp ----------------------------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ----------------------------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence 12234567889999999886 46788888888 999999
Q ss_pred CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
++.+.. ..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+. +...+..++|+|++.+
T Consensus 203 ~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 203 ANCKLK------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------GGDIINALCFSPNRYW 270 (340)
T ss_dssp TTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------CSSCEEEEEECSSSSE
T ss_pred CCCcee------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------CCceEEeeecCCCCce
Confidence 987654 788899999999999999 999999999999999999999888884 2457999999999876
Q ss_pred EEEeecCCCceEEEeecc------------------------------CCccceeecCCCCceeeecccCCC
Q 010784 453 IVTASYGEPGLLQFRDFS------------------------------NATCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~------------------------------~~~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
++++ .|+.|++||+. +++..+++++.|+.+++|++..+.
T Consensus 271 ~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 271 LCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6554 45999999854 234567899999999999998653
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-36 Score=277.87 Aligned_cols=256 Identities=15% Similarity=0.178 Sum_probs=208.7
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
+..|...|.+++|+++|.+||+|+.|+.|+||++..+ .+.+.++.+|.+.|++++|++.. ++++|++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~g~~l~s~ 73 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILASC 73 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------GCSEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------cCCEEEEE
Confidence 3457788999999999999999999999999999742 36778999999999999998621 47899999
Q ss_pred eCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 185 SCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 185 ~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
+.||+|++|| .+ ..+..+.+|...|.+++|+ |+ +.+|++|+.||.|++||++++.. .....+.+|.
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~----p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~ 145 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHA 145 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCS
T ss_pred cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC----cCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeeccc
Confidence 9999999999 33 3556778899999999997 54 78999999999999999987642 1235677899
Q ss_pred CceeEEEEeecC------------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 259 KPIKLMSVAGHK------------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 259 ~~v~~l~~~~~~------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
..|.+++|+|.. +.+|++|+.|+.|++||+++++..
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-------------------------------- 193 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------- 193 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--------------------------------
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--------------------------------
Confidence 999999999842 468999999999999998765321
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCCC---cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSK---SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
......+.+|...|.+++|+|++ .+|++++.|+ |++||++...... .........|...|.+++|+|
T Consensus 194 --------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 194 --------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSL 264 (297)
T ss_dssp --------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEECS
T ss_pred --------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc-ceeeeecccCCCcEEEEEECC
Confidence 01234677899999999999984 8999999999 9999998743210 000111256788999999999
Q ss_pred C-eEEEEecCCCcEEEEeCC
Q 010784 403 Y-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~~ 421 (501)
+ ++|++++.||.|++|+..
T Consensus 265 ~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSCCEEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEEEC
Confidence 9 889998999999999976
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=295.29 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=226.3
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc----------cceecccCC------------cceeEEEeeccCc
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY----------YRATLSDHK------------ARITCMRLFPLHE 166 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----------~~~~~~~h~------------~~V~~~~~~~~~~ 166 (501)
+...|++++|+|+|.+||+|+.||.|+||++.++.. ....+.+|. +.|++++|+|
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--- 103 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--- 103 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC---
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC---
Confidence 456799999999999999999999999999987532 577889998 8899999999
Q ss_pred CcccccCCCCcC--cEEEEeeCCCceEEec--CCcee---------------------------------------ee-c
Q 010784 167 TSLFRSEPQRTE--NVLVTSSCDHSIRLWW--KGSCQ---------------------------------------RC-F 202 (501)
Q Consensus 167 ~~~~~~~~~~~~--~~l~s~~~dg~i~vwd--~~~~~---------------------------------------~~-~ 202 (501)
++ .+|++++.||+|++|| .+... .. .
T Consensus 104 ----------~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 104 ----------QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp ----------CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred ----------CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 55 7999999999999999 22211 12 3
Q ss_pred cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-------eccCCCCceeEEEEeecCCeEEE
Q 010784 203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-------TLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 203 ~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.+|...|.+++|+ +++++|++| .||.|++||+.+... ... .+.+|...|.+++|+|.+..+|+
T Consensus 174 ~~h~~~v~~~~~~----~~~~~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 174 NAHTYHINSISIN----SDYETYLSA-DDLRINLWHLEITDR-----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp SCCSSCCCEEEEC----TTSSEEEEE-CSSEEEEEETTEEEE-----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred cCCCcceEEEEEc----CCCCEEEEe-CCCeEEEEECCCCCc-----eeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 6899999999997 789999998 799999999985432 222 46789999999999984448999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEeeeccCCCcEEEEEEc
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMTPAICKPILHSFSIM 354 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~v~~~ 354 (501)
+|+.||.|++||+++++..... +..+.... ......+..|...|.+++|+
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRH-----------------------------SKLFEEPEDPSNRSFFSEIISSISDVKFS 294 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTT-----------------------------CEEECCC-----CCHHHHHTTCEEEEEEC
T ss_pred EEeCCCeEEEEECcCCccccce-----------------------------eeEeccCCCccccccccccCceEEEEEEC
Confidence 9999999999999987531100 00000000 00011223345699999999
Q ss_pred CCCcEEEEEcCCc-EEEEecCC-CCCCCCCCCcccccCcccC---------------eEEEEecCC-eEEEEecCCCcEE
Q 010784 355 PSKSLICTGGIGK-AMTWDIRR-SQDAVKPQPMAELDGHVGS---------------VTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 355 ~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~h~~~---------------v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
|++++|++++. + |++||+++ ++. +..+.+|... +..++|+|+ ++|++|+.||.|+
T Consensus 295 ~~g~~l~~~~~-~~v~iwd~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 295 HSGRYMMTRDY-LSVKVWDLNMENRP------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp TTSSEEEEEES-SEEEEEETTCCSSC------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred CCCCEEEEeeC-CeEEEEeCCCCccc------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 99999999999 7 99999997 443 4677777542 334999999 8889999999999
Q ss_pred EEeCCCcccccccccCC----------------------------CCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 417 IWETDTGMLANSLLCNY----------------------------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+||+.+++.+. +..+. .......|..++|+|++++|++++.+ .+++|.
T Consensus 368 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~---~~~~~~ 443 (447)
T 3dw8_B 368 MFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN---NLYIFQ 443 (447)
T ss_dssp EEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS---CEEEEE
T ss_pred EEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc---eeeeec
Confidence 99999887653 21111 01234578899999999999999743 477775
Q ss_pred c
Q 010784 469 F 469 (501)
Q Consensus 469 ~ 469 (501)
-
T Consensus 444 ~ 444 (447)
T 3dw8_B 444 D 444 (447)
T ss_dssp C
T ss_pred c
Confidence 3
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-36 Score=289.17 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=230.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
++++.+++ ..+++++.|+.|++|+..++ +....+.. |...|++++|+| ++++|++|+.||.|+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~-------------~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSH-------------DGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECT-------------TSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECC-------------CCCEEEEECCCCeEE
Confidence 45566665 44677889999999999986 55555544 899999999999 899999999999999
Q ss_pred Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
+|| .++.+..+.+|...|.+++|. +++|++|+.||.|++||++.... ....+.+|...|.+++|+|
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~- 227 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWN------RHVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRS- 227 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-
T ss_pred EEECcCCeEEEEecCCCCceEEEEEC------CCEEEEEcCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcC-
Confidence 999 778888999999999999984 46999999999999999996554 5778889999999999998
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
++.+|++|+.||.|++||+++++. +..+..|...|.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~--------------------------------------------~~~~~~~~~~v~ 263 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIP--------------------------------------------KFTKTNHNAAVK 263 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSE--------------------------------------------EEEECCCSSCCC
T ss_pred CCCEEEEEeCCCeEEEccCCCCCc--------------------------------------------cEEecCCcceEE
Confidence 788999999999999999987532 344566889999
Q ss_pred EEEEcCCC-cEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE--ecCCCcEEEEeCCC
Q 010784 350 SFSIMPSK-SLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG--GRDDLRINIWETDT 422 (501)
Q Consensus 350 ~v~~~~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~--gs~dg~i~iwd~~~ 422 (501)
+++|+|++ .++++++ .|+ |++||+++++.. ..+. +...|.+++|+|+ +++++ |+.||.|++||+.+
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV------NTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE------EEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE------EEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 99999975 6777765 677 999999987654 5554 5678999999999 76666 55899999999998
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
++....... .+|...|.+++|+|+|++|++++ .||.|++|++..+...
T Consensus 337 ~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~--~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 337 SGLTKQVDI---PAHDTRVLYSALSPDGRILSTAA--SDENLKFWRVYDGDHV 384 (401)
T ss_dssp TEEEEEEEE---ECCSSCCCEEEECTTSSEEEEEC--TTSEEEEEECCC----
T ss_pred ccceeEEEe---cCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEECCCCccc
Confidence 665554321 46788999999999999999999 6699999999887653
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=310.95 Aligned_cols=269 Identities=20% Similarity=0.337 Sum_probs=225.6
Q ss_pred cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-----CceeeeccCCCCceEEEEeeec
Q 010784 145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-----GSCQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-----~~~~~~~~~h~~~v~~l~~s~~ 217 (501)
....+++|.+.|++++|+|+ ++++|+||+.||+|++|| . +.....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~------------~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPID------------NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-- 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTT------------CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--
T ss_pred hhhhcccCCceeEEEEecCC------------CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--
Confidence 34567899999999999984 468999999999999998 2 23456788999999999997
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
+++++|++|+.||+|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||+.......
T Consensus 440 --~~g~~l~sgs~Dg~v~vwd~~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~-- 508 (694)
T 3dm0_A 440 --SDGQFALSGSWDGELRLWDLAAGV------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYT-- 508 (694)
T ss_dssp --TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEE--
T ss_pred --CCCCEEEEEeCCCcEEEEECCCCc------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCccee--
Confidence 899999999999999999999876 4778889999999999998 78899999999999999976532100
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC--cEEEEEcCCc-EEEEecC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK--SLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~d~-i~iwd~~ 374 (501)
......+|...|.+++|+|++ .++++++.|+ |++||++
T Consensus 509 ---------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 509 ---------------------------------------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp ---------------------------------------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred ---------------------------------------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 001123588899999999986 6899999888 9999999
Q ss_pred CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
+.+.. ..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+. +...+.+++|+|++.+|
T Consensus 550 ~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l 617 (694)
T 3dm0_A 550 NCKLR------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------ANSVIHALCFSPNRYWL 617 (694)
T ss_dssp TCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB------CSSCEEEEEECSSSSEE
T ss_pred CCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec------CCCcEEEEEEcCCCcEE
Confidence 86544 788999999999999999 999999999999999999999888773 24579999999999999
Q ss_pred EEeecCCCceEEEeeccC----------------------------------------CccceeecCCCCceeeecccC
Q 010784 454 VTASYGEPGLLQFRDFSN----------------------------------------ATCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~----------------------------------------~~~~~~s~~~d~~~~~w~~~~ 492 (501)
++++ ++.|++||+.. ++..+++|+.||.+++|++..
T Consensus 618 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 618 CAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEE---TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 8875 35699998643 334577999999999999864
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-35 Score=289.28 Aligned_cols=290 Identities=20% Similarity=0.290 Sum_probs=239.1
Q ss_pred ccceecccCCcce-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 144 YYRATLSDHKARI-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 144 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.....+.+|.+.| .++.+ ++++|++|+.||+|++|| +++.+..+.+|.+.|.+++|+ +
T Consensus 112 ~~~~~l~~h~~~v~~~~~~---------------~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~----~ 172 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF---------------EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA----H 172 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE---------------ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----S
T ss_pred cceEEEcCCCCCcEEEEEE---------------CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEc----C
Confidence 3456788999885 66666 458999999999999999 788889999999999999996 5
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
++ +|++|+.||+|++||+.++. ....+.+|...|.++++++. ++.++++|+.||.|++||++++........
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred CC-EEEEEeCCCCEEEEECCCCc------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence 55 99999999999999999876 47888899999999999963 668999999999999999998764322110
Q ss_pred -----------------c-cceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 300 -----------------V-GMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 300 -----------------~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
. ....+...+.++..++..++.++. +.|++||+++++.+..+.+|...|.+++|+|+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 0 011334455566666666666654 599999999999999999999999999999999999
Q ss_pred EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784 361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 439 (501)
++|+.|+ |++||+++++.. ..+.+|...|.++++++ .++++|+.||.|++||+.+++....+ .+..
T Consensus 326 ~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~------~~~~ 392 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY------HHTN 392 (464)
T ss_dssp EEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE------ECTT
T ss_pred EEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeee------cCCC
Confidence 9999999 999999987654 88999999999999986 46666679999999999988766655 2456
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
.+..++|++++++|++|+ | |.|++||+.++...
T Consensus 393 ~~~~~~~~~~~~~l~~~~-d--g~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 393 LSAITTFYVSDNILVSGS-E--NQFNIYNLRSGKLV 425 (464)
T ss_dssp CCCEEEEEECSSEEEEEE-T--TEEEEEETTTCCEE
T ss_pred CccEEEEEeCCCEEEEec-C--CeEEEEECCCCcEE
Confidence 678889999999999987 4 89999998876643
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.8e-37 Score=282.43 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=204.3
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.+..|..+|++++|+++|.+||+|+.|+.|++||+.++. ..+..+.+|.+.|++++|++.. ++++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-----------~~~~l~s 76 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-----------YGNILAS 76 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-----------GSSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-----------CCCEEEE
Confidence 445678889999999999999999999999999998753 3567899999999999998621 4789999
Q ss_pred eeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 184 SSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 184 ~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
|+.|++|++|| .+ .....+.+|...|.+++|+ |+ +.+|++|+.||.|++||+..+.. ......+.+|
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h 149 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA----PHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAH 149 (316)
T ss_dssp EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC----CTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSS
T ss_pred EECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC----CCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccc
Confidence 99999999999 33 3556788999999999997 44 78999999999999999987532 1124566789
Q ss_pred CCceeEEEEeecC----------------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784 258 EKPIKLMSVAGHK----------------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 258 ~~~v~~l~~~~~~----------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
...|.+++|+|.. +.+|++|+.|+.|++||++....
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------------------------- 201 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---------------------------- 201 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----------------------------
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc----------------------------
Confidence 9999999999742 35789999999999999864311
Q ss_pred EeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784 322 ASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT 396 (501)
Q Consensus 322 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 396 (501)
.+.+..+.+|...|.+++|+|++ .+|++++.|+ |++||+...... ......+..|...|.
T Consensus 202 -------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~--~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 202 -------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN--TWSPKLLHKFNDVVW 266 (316)
T ss_dssp -------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC--CCBCCEEEECSSCEE
T ss_pred -------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc--chhhhhhhcCCCcEE
Confidence 02334567899999999999986 8999999998 999999863211 011234567889999
Q ss_pred EEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 397 QLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
+++|+|+ ++|++++.||.|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999 888988999999999975
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.6e-37 Score=281.63 Aligned_cols=257 Identities=17% Similarity=0.201 Sum_probs=200.5
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCC
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
..+.+|.+.|++++|+| +|++|++|+.|++|+||| .+. .+..+.+|.+.|.+++|++ +.++
T Consensus 7 ~~~~~H~~~V~~v~~s~-------------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~--~~~~ 71 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDY-------------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH--PMYG 71 (316)
T ss_dssp -------CCEEEEEECG-------------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECC--GGGS
T ss_pred eecccccCeEEEeeEcC-------------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCC--CCCC
Confidence 45679999999999999 899999999999999999 443 4677899999999999962 1147
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
++|++|+.|++|++||+.++.. .....+.+|...|.+++|+|+. +.+|++|+.|+.|++||++.+...
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------- 140 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------- 140 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-------
T ss_pred CEEEEEECCCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-------
Confidence 8999999999999999987641 1456678899999999999852 779999999999999999865210
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-----------------CcEEEEEc
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-----------------KSLICTGG 364 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~l~~~~ 364 (501)
.....+.+|...+.+++|+|+ +++|++|+
T Consensus 141 ----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 141 ----------------------------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp ----------------------------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred ----------------------------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 001223456667777777776 47899999
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcc----cccccccCCC
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGM----LANSLLCNYP 434 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~----~~~~~~~~~~ 434 (501)
.|+ |++||++.... ..++..+.+|...|++++|+|+ .+|++|+.||+|++|++.+.. ....+
T Consensus 187 ~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~----- 258 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL----- 258 (316)
T ss_dssp TTSBCCEEEECTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-----
T ss_pred CCCeEEEEEeCCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-----
Confidence 988 99999975421 1234678899999999999996 589999999999999997632 12223
Q ss_pred CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..|...|.+++|+|+|++|++++ .|+.|++|+....+
T Consensus 259 ~~~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 259 HKFNDVVWHVSWSITANILAVSG--GDNKVTLWKESVDG 295 (316)
T ss_dssp EECSSCEEEEEECTTTCCEEEEE--SSSCEEEEEECTTS
T ss_pred hcCCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEECCCC
Confidence 34577899999999999999999 66999999987544
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.9e-35 Score=307.13 Aligned_cols=348 Identities=17% Similarity=0.150 Sum_probs=278.6
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+..+..+|++++|+|++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+| ++.+|++
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~ 114 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHP-------------TKPYVLS 114 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECS-------------SSSEEEE
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEEEEEEeC-------------CCCEEEE
Confidence 455568888999999999999999999999999999985 78888999999999999999 8899999
Q ss_pred eeCCCceEEec--CC-ceeeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCC
Q 010784 184 SSCDHSIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHE 258 (501)
Q Consensus 184 ~~~dg~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 258 (501)
++.||+|++|| .+ .....+.+|...|.+++|+ | ++..|++|+.||.|++||+.++.. ...+. .+.
T Consensus 115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~ 184 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN----PKDPSTFASGCLDRTVKVWSLGQSTP------NFTLTTGQE 184 (814)
T ss_dssp EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE----TTEEEEEEEEETTSEEEEEETTCSSC------SEEEECCCT
T ss_pred EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCcc------eeEEecCCC
Confidence 99999999999 33 6677888999999999998 6 788999999999999999987664 34444 455
Q ss_pred CceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCC
Q 010784 259 KPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRT 334 (501)
Q Consensus 259 ~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~ 334 (501)
..+.+++|+|. ++.++++++.||.|++||+++++.+.... .+...+.++.++++..++++ ++.|++||+.+
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 88999999973 57799999999999999999876543321 34556777777776544333 35899999999
Q ss_pred CceEeeeccCCCcEEEEEEcCCCc--EEEEEcCCcEEEEecCCCCCCCC-------------------------------
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKS--LICTGGIGKAMTWDIRRSQDAVK------------------------------- 381 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~d~i~iwd~~~~~~~~~------------------------------- 381 (501)
++.+..+..|...+.+++|+|++. ++++++++++.+|++........
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 999999999999999999999987 67777777799998765432100
Q ss_pred ------CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784 382 ------PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 382 ------~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 454 (501)
......+..+...+.+++|+|+ +++++++ ||.+.+|++..... .+...+.+++|+|+|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~----------~~~~~i~~~~~spdg~~la 408 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN----------KAFGKCQDFVWGPDSNSYA 408 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------EEEEECSEEEECTTSSCEE
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------cCCCceEEEEEeCCCCeEE
Confidence 0001112334557899999999 8888875 89999999753322 1235688999999999999
Q ss_pred EeecCCCceEEEeec-------------cCCc---cceeecCCCCceeeecccCC
Q 010784 455 TASYGEPGLLQFRDF-------------SNAT---CPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 455 s~~~d~~g~i~~w~~-------------~~~~---~~~~s~~~d~~~~~w~~~~~ 493 (501)
+++ .+|.|++|+. ++.+ ..+++++.|+.+++|+++..
T Consensus 409 ~~~--~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~ 461 (814)
T 3mkq_A 409 LID--ETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNG 461 (814)
T ss_dssp EEC--TTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTC
T ss_pred EEe--CCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcC
Confidence 998 6699999962 2333 36777888999999998754
No 76
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.2e-35 Score=272.98 Aligned_cols=277 Identities=14% Similarity=0.190 Sum_probs=232.5
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecc--cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
....|..+|++++|+|++.++++++ |+.+++|++.++.. ....+. +|...|++++|+| ++++
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~ 111 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-------------DGCT 111 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-------------TSSE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-------------CCCE
Confidence 3456888899999999999999999 99999999987522 222333 7999999999999 8899
Q ss_pred EEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 181 LVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
|++++.||.|++|| .++ ....+..|...|.+++|+ ++++++++++.||.|++||+.+++ ....+..
T Consensus 112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~~ 181 (337)
T 1gxr_A 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQT------LVRQFQG 181 (337)
T ss_dssp EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECC
T ss_pred EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC----CCCCEEEEEeCCCcEEEEeCCCCc------eeeeeec
Confidence 99999999999999 333 556778899999999997 789999999999999999999876 4778888
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE--e-CCcEEEEEcC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA--S-GSSVVTIDLR 333 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~i~~~d~~ 333 (501)
|...|.+++|+| ++.+|++++.||.|++||+++++.... ......+.++.++++..+++ . ++.+++||++
T Consensus 182 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 182 HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQ------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEee------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 999999999998 788999999999999999998865433 24455667777766544333 3 3589999999
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
+.+.. .+..|...|.+++|+|++++|++++.++ |++||+.+++.. . ...|...|++++|+|+ +++++++.
T Consensus 255 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~------~-~~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 255 KPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------F-QSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp SSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------E-EEECSSCEEEEEECTTSCEEEEEET
T ss_pred CCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE------E-EecCCCcEEEEEECCCCCEEEEecC
Confidence 88754 5677899999999999999999999888 999999987643 2 2357889999999999 88888899
Q ss_pred CCcEEEEeC
Q 010784 412 DLRINIWET 420 (501)
Q Consensus 412 dg~i~iwd~ 420 (501)
||.|++|++
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999996
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-37 Score=289.92 Aligned_cols=251 Identities=10% Similarity=0.047 Sum_probs=199.6
Q ss_pred cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCE
Q 010784 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKI 224 (501)
Q Consensus 149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~ 224 (501)
+..|.++|++++|+| ++++|++|+.||.|++|| .+ +.+..+.+|...|.+++|+ +++++
T Consensus 7 ~~~~~~~v~~~~~s~-------------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~ 69 (377)
T 3dwl_C 7 LHILPKPSYEHAFNS-------------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA----PKSNR 69 (377)
T ss_dssp EEECSSCCSCCEECS-------------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC----TTTCC
T ss_pred EecCCCcEEEEEECC-------------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEe----CCCCE
Confidence 345678899999999 899999999999999999 55 6788899999999999997 88999
Q ss_pred EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
|++|+.||.|++||+.++.. ......+.+|...|.+++|+| ++++|++++.|+.|++||+++++..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---------- 135 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGT---WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDW---------- 135 (377)
T ss_dssp EEEEETTSSEEEC------C---CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----C----------
T ss_pred EEEEeCCCeEEEEEcCCCCc---eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccc----------
Confidence 99999999999999998751 123567788999999999998 7889999999999999999876421
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC--
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV-- 380 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~-- 380 (501)
.....+.. |...|.+++|+|++++|++++.|+ |++||+...+...
T Consensus 136 -------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 -------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp -------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred -------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 11234445 889999999999999999999988 9999996433110
Q ss_pred ----------CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc----ccccccCCCCCCCcceeeeE
Q 010784 381 ----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML----ANSLLCNYPEEADISTGCSA 445 (501)
Q Consensus 381 ----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~ 445 (501)
...++..+ +|...|++++|+|+ +++++++.||.|++||+.+++. +..+ ..|...|.+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~ 258 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-----KLSQLPLRSLL 258 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-----ECSSSCEEEEE
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-----cCCCCceEEEE
Confidence 02234555 89999999999999 8888889999999999999987 7777 56788899999
Q ss_pred eeccccEEEEeecCCCceEEEeecc
Q 010784 446 MAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 446 ~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
|+|+|++|++++ +++.+ +|+..
T Consensus 259 ~s~~~~~l~~~~--~~~~~-~~~~~ 280 (377)
T 3dwl_C 259 WANESAIVAAGY--NYSPI-LLQGN 280 (377)
T ss_dssp EEETTEEEEEES--SSSEE-EECCC
T ss_pred EcCCCCEEEEEc--CCcEE-EEEeC
Confidence 999999999987 44655 55543
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-35 Score=285.27 Aligned_cols=281 Identities=14% Similarity=0.089 Sum_probs=212.8
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
.......+|...|+||+|+|. ++++||+|+.||+|+||| .+ .....+.+|.+.|++|+|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~------------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p--- 174 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPT------------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP--- 174 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSS------------CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS---
T ss_pred eecccCCCCCCCEEEEEEeCC------------CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC---
Confidence 344556789999999999994 568999999999999999 33 33455678999999999972
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.++++|++|+.||+|++||++++.. ........+...+.+++|++ ++.+|++|+.||.|++||++...
T Consensus 175 ~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~------- 242 (435)
T 4e54_B 175 LNTNQFYASSMEGTTRLQDFKGNIL----RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE------- 242 (435)
T ss_dssp SCTTEEEEECSSSCEEEEETTSCEE----EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB-------
T ss_pred CCCCEEEEEeCCCEEEEeeccCCce----eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce-------
Confidence 3688999999999999999986532 11222233455678999997 78899999999999999986532
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEcCCc-EEEEecCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGGIGK-AMTWDIRRSQ 377 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iwd~~~~~ 377 (501)
+..+.+|...|.+++|+|++. ++++|+.|+ |++||+++.+
T Consensus 243 --------------------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 243 --------------------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp --------------------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred --------------------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 234567899999999999865 788899888 9999999876
Q ss_pred CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCC-CCCcceeeeEeeccccEEEE
Q 010784 378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPE-EADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s 455 (501)
.. ..+....+|...|++++|+|+ .+|++|+.||.|+|||+.+++....+..+... .....+..+.|+|++.++++
T Consensus 285 ~~---~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 285 GK---ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp SS---SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cc---ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 53 223445679999999999999 88999999999999999999887777544321 11122344578888887777
Q ss_pred eecC----------CCceEEEeeccC-----------------------CccceeecCCCCceeeecccCC
Q 010784 456 ASYG----------EPGLLQFRDFSN-----------------------ATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 456 ~~~d----------~~g~i~~w~~~~-----------------------~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
++.+ +++.|++||... .+..+++|+ |+.+++|+++.+
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 6542 346799998543 233455554 788999998754
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.5e-35 Score=274.25 Aligned_cols=281 Identities=11% Similarity=0.043 Sum_probs=233.1
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEe
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTS 184 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~ 184 (501)
.|...|++++|+|++.++++|+.|+.|++|++.++. .....+.+|...|++++|+| +++ +|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~l~~~ 75 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-------------NTDLQIYVG 75 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-------------SSSEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-------------CCCcEEEEE
Confidence 466779999999999999999999999999998752 13455669999999999999 789 99999
Q ss_pred eCCCceEEecC--CceeeeccC--CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC---------CCccccccce
Q 010784 185 SCDHSIRLWWK--GSCQRCFKG--HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS---------SGKRGQQALK 251 (501)
Q Consensus 185 ~~dg~i~vwd~--~~~~~~~~~--h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~ 251 (501)
+.||.|++||. ......+.+ |...|.+++|+ + +++|++++.|+.|++||+.+ +. ++
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~----~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~ 144 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKY----G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL------NS 144 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE----T-TTEEEEEETTSEEEEECHHHHTTBCEEEEES------CS
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceEEEEeC----C-CCEEEEEcCCCeEEEEcccccccccccccCC------ee
Confidence 99999999983 445577788 99999999997 6 89999999999999999987 44 34
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI 330 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (501)
..+. |...|.+++|++ +. +++++.|+.|++||+++ +...
T Consensus 145 ~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~------------------------------------ 184 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDN------------------------------------ 184 (342)
T ss_dssp SSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCC------------------------------------
T ss_pred eEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccccc------------------------------------
Confidence 4555 889999999986 33 99999999999999987 4321
Q ss_pred EcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCC--CCCCCCCCcccccCccc---------CeEE
Q 010784 331 DLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRS--QDAVKPQPMAELDGHVG---------SVTQ 397 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~h~~---------~v~~ 397 (501)
.......|...+.+++|+| +++++++++.++ |++|++... ... ......+..|.. .|++
T Consensus 185 ------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (342)
T 1yfq_A 185 ------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN--SSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp ------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT--CTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred ------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc--cccceeeecccccccccccceeEEE
Confidence 0112234678899999999 999999999998 999999876 111 133466777754 9999
Q ss_pred EEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCC-CcceeeeEeeccccEEEEeecCCCce-EEEeec
Q 010784 398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEA-DISTGCSAMAVSGCRIVTASYGEPGL-LQFRDF 469 (501)
Q Consensus 398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~-i~~w~~ 469 (501)
++|+|+ ++|++|+.||.|++||+.+++.+..+ ..| ...|.+++ |++++|++++ .||. .+.+..
T Consensus 257 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~--~~~~~l~s~s--~Dg~~~~~~~~ 322 (342)
T 1yfq_A 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKFNEDSVVKIA--CSDNILCLAT--SDDTFKTNAAI 322 (342)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSSEEEEEE--ECSSEEEEEE--ECTHHHHCSSS
T ss_pred EEEcCCCCEEEEecCCceEEEEcCccHhHhhhh-----hcccCCCceEec--CCCCeEEEEe--cCCcccccccc
Confidence 999999 88888899999999999999999888 455 78899998 9999999999 5587 555553
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.6e-35 Score=280.42 Aligned_cols=284 Identities=17% Similarity=0.206 Sum_probs=231.3
Q ss_pred CCceEEeeCCcEEEe-ecCCeeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 112 PHDHILLDNNDIFST-QGSSIQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~-~g~~d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
..+.++++++...++ +|+.+|.|+||++.... .....+.+|.+.|++++|+|. ++++|++|+.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~------------~~~~l~s~s~d 103 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH------------NDNVIASGSED 103 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT------------CTTEEEEEETT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC------------CCCEEEEEeCC
Confidence 367789998886554 68899999999986532 345668899999999999984 57899999999
Q ss_pred CceEEec--CC-------ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeec--c
Q 010784 188 HSIRLWW--KG-------SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATL--Y 255 (501)
Q Consensus 188 g~i~vwd--~~-------~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~ 255 (501)
|+|++|| .+ ..+..+.+|...|.+++|+ +++ ++|++|+.||.|++||+.+++ ....+ .
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~ 173 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH----PTAQNVLLSAGCDNVILVWDVGTGA------AVLTLGPD 173 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC----SSBTTEEEEEETTSCEEEEETTTTE------EEEEECTT
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEEC----cCCCCEEEEEcCCCEEEEEECCCCC------ccEEEecC
Confidence 9999999 43 4577888999999999997 776 699999999999999999876 46667 7
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
.|...|.+++|+| ++.+|++++.||.|++||+++++.
T Consensus 174 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------------ 210 (402)
T 2aq5_A 174 VHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTV------------------------------------------ 210 (402)
T ss_dssp TCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEE------------------------------------------
T ss_pred CCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCce------------------------------------------
Confidence 8999999999998 788999999999999999988643
Q ss_pred ceEeee-ccCCCc-EEEEEEcCCCcEEEEE---cCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEE-
Q 010784 336 QKVMTP-AICKPI-LHSFSIMPSKSLICTG---GIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIV- 406 (501)
Q Consensus 336 ~~~~~~-~~~~~~-v~~v~~~~~~~~l~~~---~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l- 406 (501)
+..+ ..|.+. +.++.|+|++.++++| +.++ |++||+++.+.. +... ..|...+.+++|+|+ .++
T Consensus 211 --~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 211 --VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-----LSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp --EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-----SEEEECCCCSSCEEEEEETTTTEEE
T ss_pred --eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-----ceEEeccCCCceeEEEEcCCCCEEE
Confidence 2233 456554 8899999999999999 7788 999999986542 1222 246778999999999 544
Q ss_pred EEecCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 407 TGGRDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
++|+.||.|++||+.+++. +..+..+ .+...+.+++|+|++.+++++ ++.+++|++..+..
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~----~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNK----CEIARFYKLHERKC 345 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGG----TEEEEEEEEETTEE
T ss_pred EEEcCCCeEEEEEecCCCcceEeeccc---ccCCcccceEEecccccceec----ceeEEEEEcCCCcE
Confidence 5777899999999998874 4444322 246889999999999988754 36999999987654
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=278.80 Aligned_cols=263 Identities=19% Similarity=0.176 Sum_probs=216.8
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
+++..+.+|.+.|++++|+| ++++|++|+.||.|+||| .+..+..+.+|...|++++|+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~-------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~---- 64 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDY-------------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA---- 64 (379)
T ss_dssp ---CCEEECCCCEEEEEECS-------------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----
T ss_pred CccEEecCCcccEEEEEEcC-------------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeC----
Confidence 45678899999999999999 899999999999999998 345567788999999999996
Q ss_pred CC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccc
Q 010784 220 GS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 220 ~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
++ +++|++|+.||.|++||+.++.. .....+..|...|.+++|+|.. +.+|++++.|+.|++||+++....
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-- 138 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-- 138 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCce----eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--
Confidence 44 89999999999999999998741 2466778899999999999842 789999999999999999876321
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-------------CCcEEEEE
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-------------SKSLICTG 363 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-------------~~~~l~~~ 363 (501)
....+..|...|.+++|+| ++.+++++
T Consensus 139 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 139 ----------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp ----------------------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred ----------------------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 1123456889999999999 69999999
Q ss_pred cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCC
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEAD 438 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 438 (501)
+.|+ |++||+++.... ...+..+.+|...|++++|+|+ .++++++.||.|++||+.++.............|.
T Consensus 179 ~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256 (379)
T ss_dssp ETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred eCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence 9888 999999886543 2345678889999999999996 78888899999999999987532222111224577
Q ss_pred cceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 439 ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 439 ~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..|.+++|+|+|++|++++ .||.|++|++..+.
T Consensus 257 ~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSG--GDNKVTLWKENLEG 289 (379)
T ss_dssp SCEEEEEECSSSCCEEEEE--SSSSEEEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEec--CCCcEEEEeCCCCC
Confidence 8899999999999999999 66999999998654
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.9e-34 Score=277.07 Aligned_cols=299 Identities=20% Similarity=0.336 Sum_probs=247.6
Q ss_pred ccceecccCCcce-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 144 YYRATLSDHKARI-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 144 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
+....+.+|.+.| +++. + ++++|++|+.||+|++|| +++.+..+.+|.+.|.+++|+
T Consensus 109 ~~~~~l~~h~~~v~~~~~--~-------------~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----- 168 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQ--F-------------CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----- 168 (445)
T ss_dssp CCCEEEECSTTSCEEEEE--E-------------ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-----
T ss_pred ceeEEecccCCCcEEEEE--E-------------cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-----
Confidence 3556788999875 5544 4 579999999999999999 788889999999999999984
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
++++++|+.||.|++||+.+++ ....+.+|...|.++.++ +..+++|+.||.|++||+++++.+....
T Consensus 169 -~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 236 (445)
T 2ovr_B 169 -DNIIISGSTDRTLKVWNAETGE------CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLM-- 236 (445)
T ss_dssp -TTEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEE--
T ss_pred -CCEEEEEeCCCeEEEEECCcCc------EEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEc--
Confidence 5699999999999999999876 478888999999999996 3479999999999999999886543322
Q ss_pred cceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
.+...+.++.+++..++.++. +.+++||+++++.+..+.+|...|.++.| ++.++++++.|+ |++||+++++.
T Consensus 237 ---~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 237 ---GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp ---CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred ---CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE
Confidence 345666777777766666654 58999999999999999999999999999 888999999888 99999998765
Q ss_pred CCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
. ..+.+|...+.++.+++. ++++|+.||.|++||+.+++.+..+..+ ..|...|.+++|+ +++|++|+
T Consensus 312 ~------~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~- 379 (445)
T 2ovr_B 312 I------HTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSS- 379 (445)
T ss_dssp E------EEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECST--TSCSSCEEEEEEC--SSEEEEEE-
T ss_pred E------EEEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEe-
Confidence 4 788899999999988765 5666679999999999999998888532 2467889999985 68999999
Q ss_pred CCCceEEEeeccCCc--------------------------cceeecCCCCc----eeeecccC
Q 010784 459 GEPGLLQFRDFSNAT--------------------------CPVLKHEVQND----SKFWGPQC 492 (501)
Q Consensus 459 d~~g~i~~w~~~~~~--------------------------~~~~s~~~d~~----~~~w~~~~ 492 (501)
.||.|++||+.++. ..+++++.||+ +.+|++..
T Consensus 380 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 380 -DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 66999999976543 23456777776 77887754
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=287.50 Aligned_cols=280 Identities=15% Similarity=0.163 Sum_probs=216.0
Q ss_pred EEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 116 ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 116 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
..|++++..+++++ .|+.. .+.+..+ .+|.+.|++++|+|. ++++|++|+.||+|+|||
T Consensus 33 ~~f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~------------~~~~l~s~s~dg~v~vwd 92 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPG------------ETPYLITGSDQGVIKIWN 92 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECS------------SSCEEEEEETTSEEEEEE
T ss_pred hhcCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCC------------CCCEEEEecCCceEEEeE
Confidence 35678888888776 37755 4777777 899999999999983 478999999999999998
Q ss_pred --C---Cce---eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc---CCCccc--cccceeec--cC--C
Q 010784 195 --K---GSC---QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS---SSGKRG--QQALKATL--YG--H 257 (501)
Q Consensus 195 --~---~~~---~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~---~~~~~~--~~~~~~~~--~~--~ 257 (501)
. +.. ...+ .|...|.+++|+ +++++|++|+.||.|++||+. .+.... ....+..+ .. +
T Consensus 93 ~~~~~~~~~~~~~~~~-~h~~~v~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 93 LKEIIVGEVYSSSLTY-DCSSTVTQITMI----PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp HHHHHTTCCCSCSEEE-ECSSCEEEEEEC----TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred CcccccCcccceeeec-cCCCCEEEEEEe----CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 2 321 2222 599999999997 789999999999999999995 332100 00011111 11 5
Q ss_pred CCceeEEEEee-cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 258 EKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 258 ~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
...+.++.+.. .++.+|++|+.||.|++||+++++.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------------- 204 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER------------------------------------------- 204 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-------------------------------------------
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-------------------------------------------
Confidence 56666776432 2688999999999999999987643
Q ss_pred eEeeecc--CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-CcccCeEEEEec----CC-eEEE
Q 010784 337 KVMTPAI--CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMD----PY-KIVT 407 (501)
Q Consensus 337 ~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~----~~-~~l~ 407 (501)
+..+.. |.+.|++++|+|++++|++|+.|+ |++||+++++.. ..+. .|...|++++++ |+ .+++
T Consensus 205 -~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 205 -LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------RSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp -EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------EEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred -eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------EEEecCCCCceEEEEeccccCCCccEEE
Confidence 234444 788999999999999999999999 999999986544 6654 678899999555 55 7999
Q ss_pred EecCCCcEEEEeCCCcccccccccCCC-------------------C--CCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 408 GGRDDLRINIWETDTGMLANSLLCNYP-------------------E--EADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~-------------------~--~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
+|+.||.|++||+.+++++..+..+.. . .|...|.+++|+ ++++|++|+ .||.|++
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~--~d~~i~~ 354 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE--ATSSIVM 354 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG--GGTEEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC--CCCeEEE
Confidence 999999999999999988777754320 1 267789999999 889999999 6699999
Q ss_pred eeccCCc
Q 010784 467 RDFSNAT 473 (501)
Q Consensus 467 w~~~~~~ 473 (501)
||+..+.
T Consensus 355 wd~~~~~ 361 (437)
T 3gre_A 355 FSLNELS 361 (437)
T ss_dssp EETTCGG
T ss_pred EECCCcc
Confidence 9976543
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5e-35 Score=276.49 Aligned_cols=253 Identities=11% Similarity=0.098 Sum_probs=211.0
Q ss_pred cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCE
Q 010784 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKI 224 (501)
Q Consensus 149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~ 224 (501)
+..|.++|++++|+| ++++|++|+.||.|++|| .++ .+..+.+|...|.+++|+ +++++
T Consensus 4 ~~~~~~~i~~~~~s~-------------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~ 66 (372)
T 1k8k_C 4 HSFLVEPISCHAWNK-------------DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA----PDSNR 66 (372)
T ss_dssp EESCSSCCCEEEECT-------------TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE----TTTTE
T ss_pred ecccCCCeEEEEECC-------------CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe----CCCCE
Confidence 456899999999999 899999999999999999 554 788889999999999998 78999
Q ss_pred EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
|++|+.||.|++||+.+++. .....+..|...|.+++|+| ++.+|++++.|+.|++||++.++....
T Consensus 67 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~-------- 133 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTW----KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWV-------- 133 (372)
T ss_dssp EEEEETTSCEEEEEEETTEE----EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEE--------
T ss_pred EEEEcCCCeEEEEECCCCee----eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCccee--------
Confidence 99999999999999987652 12344567999999999998 788999999999999999987642110
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC----
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA---- 379 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~---- 379 (501)
.......|...|.+++|+|++++|++++.++ |++||++.....
T Consensus 134 --------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 134 --------------------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp --------------------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred --------------------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence 0112245788999999999999999999888 999997532110
Q ss_pred --------CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 380 --------VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 380 --------~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
.....+..+.+|...|++++|+|+ .++++++.||.|++||+.+++.+..+ ..|...+.+++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~ 256 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITES 256 (372)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETT
T ss_pred ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-----ccCCCCeEEEEEecCC
Confidence 013445778889999999999999 88888899999999999999999988 4567789999999999
Q ss_pred cEEEEeecCCCceEEEeeccC
Q 010784 451 CRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w~~~~ 471 (501)
++|++| .++.|++|++..
T Consensus 257 ~~l~~~---~d~~i~i~~~~~ 274 (372)
T 1k8k_C 257 SLVAAG---HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEE---TTSSCEEEEEET
T ss_pred CEEEEE---eCCeEEEEEccC
Confidence 988887 348999998765
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=273.97 Aligned_cols=279 Identities=14% Similarity=0.166 Sum_probs=233.6
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
.....+.+|.+.|++++|+| ++++|++|+.||.|++|| .++.+..+.+|...|.+++|+ ++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~ 85 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNK-------------EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD----CF 85 (369)
T ss_dssp EEEEEEECCSSCEEEEEECT-------------TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEEC----TT
T ss_pred cccEEEEEeeceEEEEEEcC-------------CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEc----CC
Confidence 33456789999999999999 899999999999999999 788889999999999999997 78
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRS 296 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~ 296 (501)
+++|++++.||.|++||+.++.. ...+. +...|.+++|+| ++.++++++.+ +.|++||+........
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~------~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQC------VATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE------EEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcE------EEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCcccee
Confidence 99999999999999999998763 55555 888999999998 78899999998 9999999987654322
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEec
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDI 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~ 373 (501)
... ........+..|.. .+.+++|+|+++++++++.++ |++||+
T Consensus 158 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 204 (369)
T 3zwl_B 158 LTK---------------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204 (369)
T ss_dssp EEE---------------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ecc---------------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 110 11122234445555 899999999999999999888 999999
Q ss_pred CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
++.. ..+..+..|...|.+++|+|+ .++++++.||.|++||+.+++.+..+. +...+..++|+|++++
T Consensus 205 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 273 (369)
T 3zwl_B 205 SNNY-----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE------TDCPLNTAVITPLKEF 273 (369)
T ss_dssp TTTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CSSCEEEEEECSSSSE
T ss_pred CCCc-----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec------CCCCceeEEecCCCce
Confidence 9832 224778889999999999999 888888899999999999999988884 4678999999999999
Q ss_pred EEEeecCCCc--------------eEEEeec---------------------cCCccceeecCCCCceeeecccCC
Q 010784 453 IVTASYGEPG--------------LLQFRDF---------------------SNATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 453 l~s~~~d~~g--------------~i~~w~~---------------------~~~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
+++++. ++ .+++||. .+.+..+++++.|+.+++|++...
T Consensus 274 l~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 274 IILGGG--QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEEC--CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEEeec--CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 999984 45 7888884 345567889999999999998743
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.9e-35 Score=273.71 Aligned_cols=301 Identities=13% Similarity=0.117 Sum_probs=222.0
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
..+..|...|++++|+|++.++++|+.|+.|++|++.++. +....+.+|...|++++|+|.. ++++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------d~~~ 73 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-----------YGRI 73 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-----------GCSE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-----------CCCE
Confidence 3455788889999999999999999999999999998642 4667788999999999999821 3799
Q ss_pred EEEeeCCCceEEec--CC---------ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 181 LVTSSCDHSIRLWW--KG---------SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~---------~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
|++|+.||+|++|| .+ +.+..+..|...|.+++|+ ++ +.+|++|+.||.|++||+.++.....
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA----PAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc----CCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999999 33 4577788999999999997 67 89999999999999999988764211
Q ss_pred ccce-------eeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 248 QALK-------ATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 248 ~~~~-------~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
.... .....|...+.+++|+|. ++..+++++.|+.+.+|+...++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------- 204 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL------------------------- 204 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------------------------
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------------------------
Confidence 1110 111268889999999984 488999999999998888766532
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG 393 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~ 393 (501)
..+..+.+|...|.+++|+|++ ++|++|+.|+ |++||++..... .....+..
T Consensus 205 -----------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~ 261 (351)
T 3f3f_A 205 -----------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP------LASEESLT 261 (351)
T ss_dssp -----------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred -----------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc------cccCCccc
Confidence 1234566789999999999998 8999999998 999999986543 22222233
Q ss_pred CeEEEEecCC-eEEEEe----cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 394 SVTQLHMDPY-KIVTGG----RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 394 ~v~~l~~~~~-~~l~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.+......+. ..++.+ .....+.+|+..+.+.+..+ .+|...|++++|+|++++|++++ .||.|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~ 334 (351)
T 3f3f_A 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-----DDHNGEVWSVSWNLTGTILSSAG--DDGKVRLWK 334 (351)
T ss_dssp -----------------------------CCSEEEEEEEEE-----CTTSSCEEEEEECSSSCCEEEEE--TTSCEEEEE
T ss_pred ceeccCCCcccccccccccccccceeeeecccccccEEEEE-----ecccccEEEEEEcCCCCEEEEec--CCCcEEEEe
Confidence 3333333333 333322 24455677777777888888 56788999999999999999999 669999999
Q ss_pred ccCCcc
Q 010784 469 FSNATC 474 (501)
Q Consensus 469 ~~~~~~ 474 (501)
+..++.
T Consensus 335 ~~~~~~ 340 (351)
T 3f3f_A 335 ATYSNE 340 (351)
T ss_dssp ECTTSC
T ss_pred cCcCcc
Confidence 998764
No 87
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-35 Score=278.00 Aligned_cols=272 Identities=13% Similarity=0.121 Sum_probs=214.2
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCceeeecc--CCCCceEEEEeeec
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGSCQRCFK--GHNGPVSTLSDKLL 217 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~~~~~~~--~h~~~v~~l~~s~~ 217 (501)
......+.+|.+.|++++|+| ++ ++|++|+.||.|+||| .+.....+. +|...|.+++|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~-------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-- 127 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHP-------------THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-- 127 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECS-------------SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE--
T ss_pred cceEEeccCCCCCEEEEEECC-------------CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC--
Confidence 356677889999999999999 67 8999999999999999 445555444 699999999998
Q ss_pred CCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeec---cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784 218 GDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATL---YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA 293 (501)
Q Consensus 218 ~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 293 (501)
+ ++++|++|+.|+.|++||+.+.. ...+ ..|...|.+++|+| ++.+|++|+.|+.|++||++..
T Consensus 128 --~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-- 195 (383)
T 3ei3_B 128 --QFNTNQLFVSSIRGATTLRDFSGSV-------IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGH-- 195 (383)
T ss_dssp --TTEEEEEEEEETTTEEEEEETTSCE-------EEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSC--
T ss_pred --CCCCCEEEEEeCCCEEEEEECCCCc-------eEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCC--
Confidence 6 77999999999999999998632 3344 34558899999998 7889999999999999998422
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEcCCc-EEEE
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGGIGK-AMTW 371 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iw 371 (501)
.+..+..|...|.+++|+|++. ++++++.|+ |++|
T Consensus 196 -------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 232 (383)
T 3ei3_B 196 -------------------------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW 232 (383)
T ss_dssp -------------------------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence 2345667899999999999998 999999888 9999
Q ss_pred ecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCC--CCCCcc-------
Q 010784 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--EEADIS------- 440 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~------- 440 (501)
|+++.+.. ...+..+ +|...|++++|+| + .++++++.|+.|++||+.+++.+..+..+.. ..|...
T Consensus 233 d~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 233 DLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred eCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence 99985432 2233444 6899999999999 8 8888889999999999999988877754321 122233
Q ss_pred ---eeeeEeeccccEEEEeecCCCceEEEeeccC-----------------------CccceeecCCCCceeeecccC
Q 010784 441 ---TGCSAMAVSGCRIVTASYGEPGLLQFRDFSN-----------------------ATCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 441 ---v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~-----------------------~~~~~~s~~~d~~~~~w~~~~ 492 (501)
+..++|+|+|++ +++ .|+.|++||+.. .+..+++++ |+.+++|+++.
T Consensus 310 ~~~~~~~~~s~dg~~--s~s--~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL--LLN--DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSSEEEEECBCCTTT--CTT--CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEecCCccc--ccC--CCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 333566666666 555 679999999643 334456675 89999998863
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=280.60 Aligned_cols=290 Identities=7% Similarity=-0.017 Sum_probs=226.5
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
..-...|.+++|+|||.++|+++.|++|+ |.. ....+.+|...|.+++|+| +| .
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~----~~~~l~gh~~~v~~V~FsP-------------dg-------~ 65 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPK----YAKDINCNSKNLFHVKEFP-------------LE-------F 65 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EEC----CCSCCSSBGGGTEEEEEEC-------------CC-------C
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccc----ccceecCCCccEEEEEECC-------------CC-------C
Confidence 33446699999999999999999999999 643 3355689999999999999 66 6
Q ss_pred CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC-----c
Q 010784 187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK-----P 260 (501)
Q Consensus 187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~ 260 (501)
++.+.+|+ .+..+..+ .|...|.+++|+ |+|.+|++++.||.|++||... ++..+. |.. .
T Consensus 66 ~~~~~~~~~~~~~~~~~-~~~~~V~~vawS----PdG~~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 66 ENKLDFELAQQNGLLNS-QPVCYPRVCKPS----PIDDWMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp CCTTTTSCCCSSCSSTT-SCSCCEEEEEEC----SSSSCEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTC
T ss_pred cceEEEEeCCCceEeec-CCCCcEEEEEEC----CCCCEEEEEeCCCcEEEEeCCc--------eeeecc-CCCcccccc
Confidence 78888887 44444444 458899999998 8999999999999999999543 355566 665 5
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
|.+++|+| ++++|++|+.||+|++||+.++..... . .-.+.+
T Consensus 132 v~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~-~------------------------------------~i~l~t 173 (588)
T 2j04_A 132 YHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTP-E------------------------------------FYFESS 173 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCC-C------------------------------------CEEEEE
T ss_pred EEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccc-c------------------------------------ceeeee
Confidence 99999998 899999999999999999988642100 0 001223
Q ss_pred e----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCCeEEEEecCCCc
Q 010784 341 P----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPYKIVTGGRDDLR 414 (501)
Q Consensus 341 ~----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~l~~gs~dg~ 414 (501)
+ .+|...|.+++|+|+| +++++.|+ |++||+...+.. ....++ .+|...|.+++|+ +..+++++ +++
T Consensus 174 i~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~t 246 (588)
T 2j04_A 174 IRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGY 246 (588)
T ss_dssp EECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSE
T ss_pred eecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---cceeeecccccCcEEEEEEE-CCEEEEEe-CCe
Confidence 3 5678899999999999 66666677 999999876531 122456 4788899999999 76666664 699
Q ss_pred EEEEeCCCcccccccccCCCCCCCcceeeeEe--eccccEEEEeecCCCceEEEeec-----cCCccceeecCCCCceee
Q 010784 415 INIWETDTGMLANSLLCNYPEEADISTGCSAM--AVSGCRIVTASYGEPGLLQFRDF-----SNATCPVLKHEVQNDSKF 487 (501)
Q Consensus 415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~g~i~~w~~-----~~~~~~~~s~~~d~~~~~ 487 (501)
|++||+.+++..... .+|...+..++| +|++..|++++ ++|. ++|.+ +++...+++ .|+.+++
T Consensus 247 IkLWd~~~~~~~~~~-----~gh~~~V~~va~~~s~d~~~La~a~--edG~-klw~~d~~~~spd~~l~a~--~d~~v~l 316 (588)
T 2j04_A 247 VHKIDLKNYSISSLK-----TGSLENFHIIPLNHEKESTILLMSN--KTSY-KVLLEDELHVTADNIIAPY--LEKKFKK 316 (588)
T ss_dssp EEEEETTTTEEEEEE-----CSCCSCCCEEEETTCSSCEEEEECS--SCEE-EEEESSSEEEECCCSSHHH--HHHHHHH
T ss_pred EEEEECCCCeEEEEE-----cCCCceEEEEEeeeCCCCCEEEEEc--CCCC-EEEeeccEEECCCceEEEE--cCCEEEE
Confidence 999999887763333 357889999999 99999999998 6799 99997 555554444 3999999
Q ss_pred eccc
Q 010784 488 WGPQ 491 (501)
Q Consensus 488 w~~~ 491 (501)
|+.+
T Consensus 317 W~~~ 320 (588)
T 2j04_A 317 WSTI 320 (588)
T ss_dssp TTTT
T ss_pred EECC
Confidence 9875
No 89
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=273.06 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=230.0
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCc---CcEEEEeeCCCceEEec--C-Ccee-eeccCCCCceEEEEee
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT---ENVLVTSSCDHSIRLWW--K-GSCQ-RCFKGHNGPVSTLSDK 215 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~vwd--~-~~~~-~~~~~h~~~v~~l~~s 215 (501)
.+.+..+.+|.+.|++++|+| + |++|++|+.||.|++|| . +..+ ..+.+|...|.+++|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~-------------~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSP-------------PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECC-------------TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred cceeEeccCCCCceEEEEEcC-------------CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence 467778899999999999999 5 69999999999999999 3 4444 6788999999999997
Q ss_pred ecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE--eecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISKDSKVRVWDTSTSSA 293 (501)
Q Consensus 216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~l~s~s~dg~v~vwd~~~~~~ 293 (501)
+++++|++|+.||.|++||+.++. ...+..|...|.+++| ++ ++.+|++++.||.|++||+++++.
T Consensus 96 ----~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 96 ----DDGSKVFTASCDKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp ----TTSSEEEEEETTSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC
T ss_pred ----cCCCEEEEEcCCCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE
Confidence 799999999999999999999875 2345679999999999 55 678999999999999999998865
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcE----EEEEcCC
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSL----ICTGGIG 366 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~----l~~~~~d 366 (501)
+... .......++.+.....+++.. +.+.+|+++......... .+...+.++.+.++... +++++.+
T Consensus 164 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 164 MMVL------QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SEEE------ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred EEEE------ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 4432 334456666666666666654 589999998876543322 23455566666555433 8899988
Q ss_pred c-EEEEecCCCCCCCCCCCcccccCccc------------CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC
Q 010784 367 K-AMTWDIRRSQDAVKPQPMAELDGHVG------------SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 367 ~-i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 432 (501)
+ |++||++..... ..+..+.+|.. .|++++|+|+ +++++|+.||.|++||+.+++++..+
T Consensus 238 g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 311 (368)
T 3mmy_A 238 GRVAIHYINPPNPA---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS--- 311 (368)
T ss_dssp SEEEEEESSCSCHH---HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---
T ss_pred CcEEEEecCCCCcc---ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---
Confidence 8 999999986321 23356677765 7999999999 88899999999999999999999988
Q ss_pred CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
..|...|.+++|+|+|++|++++ .|+..+.|++-
T Consensus 312 --~~~~~~v~~~~~s~~g~~l~~~s--~d~~~~~~~~~ 345 (368)
T 3mmy_A 312 --EQLDQPISACCFNHNGNIFAYAS--SYDWSKGHEFY 345 (368)
T ss_dssp --CCCSSCEEEEEECTTSSCEEEEE--CCCSTTCGGGC
T ss_pred --cCCCCCceEEEECCCCCeEEEEe--ccccccccccc
Confidence 56788999999999999999999 44655555543
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5e-35 Score=275.75 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=218.2
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccC-----CCCceEEEEeeecCC
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKG-----HNGPVSTLSDKLLGD 219 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~-----h~~~v~~l~~s~~~~ 219 (501)
....+|.+.|++++|+|... .....+++++.++.|++|| .+..+..+.. |...|.+++|+|...
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred EeecCCCCceEEEEEecccC---------CCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 34568999999999998310 0145566666678999999 4555555543 668899999985444
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.++.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++.....
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 154 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQ------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-- 154 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCC------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred CCCCEEEEecCCCEEEEEEchhce------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe--
Confidence 447899999999999999999876 477888999999999999867889999999999999999876432110
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
..+..|...|.+++|+|++.+|++++.|+ |++||+++++.
T Consensus 155 ---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 155 ---------------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195 (366)
T ss_dssp ---------------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred ---------------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence 11256889999999999999999999888 99999997643
Q ss_pred CCC----------------------CCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccc-----------
Q 010784 379 AVK----------------------PQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML----------- 425 (501)
Q Consensus 379 ~~~----------------------~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~----------- 425 (501)
... .........|...|.+++|+ ..++++++.||.|++||+.+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 196 MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 200 00112233489999999999 44666778999999999988754
Q ss_pred ---ccccccCCCCCCCcceeeeEeecc--ccEEEEeecCCCceEEEeeccCC---------------------------c
Q 010784 426 ---ANSLLCNYPEEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRDFSNA---------------------------T 473 (501)
Q Consensus 426 ---~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~~~~~---------------------------~ 473 (501)
+..+ ..|...|.+++|+|+ +++|++|+ .||.|++||+..+ +
T Consensus 275 ~~~~~~~-----~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 275 VTILGRF-----DYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp EEEEEEE-----ECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred hheeccc-----cccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 4444 456778999999999 99999999 6699999997643 2
Q ss_pred cceeecCCCCceeeeccc
Q 010784 474 CPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 474 ~~~~s~~~d~~~~~w~~~ 491 (501)
..+++++.|+.+++|+++
T Consensus 348 ~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CeEEEEeCCCEEEEEEec
Confidence 346788999999999875
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-35 Score=283.29 Aligned_cols=276 Identities=11% Similarity=0.075 Sum_probs=217.8
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
..+++++|+| ++++|++|+.||.|++|| .+.....+..| ..+....|+ +++++|++|+.|
T Consensus 57 ~~~~~~~~s~-------------~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFEK-------------VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAK----LQMRRFILGTTE 118 (420)
T ss_dssp BCCTTCEEEE-------------EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEEC----SSSCEEEEEETT
T ss_pred ccccceeeee-------------cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEe----cCCCEEEEEECC
Confidence 3456889999 899999999999999999 44555555555 333444554 889999999999
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
|.|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+.... .+...+.+
T Consensus 119 g~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~ 186 (420)
T 3vl1_A 119 GDIKVLDSNFNL------QREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTD 186 (420)
T ss_dssp SCEEEECTTSCE------EEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEE
T ss_pred CCEEEEeCCCcc------eeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEE
Confidence 999999998765 4677789999999999998 78899999999999999999886544321 45667777
Q ss_pred eecCCCeEEEE--e-CCcEEEEEcCCCceEeeecc---CCCcEEEE---------------------EEcCCCcEEEEEc
Q 010784 312 MKCHESMLYIA--S-GSSVVTIDLRTMQKVMTPAI---CKPILHSF---------------------SIMPSKSLICTGG 364 (501)
Q Consensus 312 ~~~~~~~~~~~--~-~~~i~~~d~~~~~~~~~~~~---~~~~v~~v---------------------~~~~~~~~l~~~~ 364 (501)
+.++++...++ + ++.+++||+++++.+..+.. +...+.++ +|+|++++|++|+
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 77776543333 3 34899999999999888875 34445444 4578999999999
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccc-ccccccCCCCCCCcc
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGML-ANSLLCNYPEEADIS 440 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~ 440 (501)
.++ |++||+++++.. ......|...|++++|+|+ . ++++|+.||.|++||+++++. +..+.. .|...
T Consensus 267 ~dg~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~~~ 337 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQT-----IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI----NEGTP 337 (420)
T ss_dssp TTSCEEEEETTTCCEE-----EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE----STTSC
T ss_pred CCCeEEEEECCCCcee-----EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc----cCCCC
Confidence 998 999999987644 2233468889999999999 6 999999999999999998754 666642 25667
Q ss_pred eeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+.++. .+++++|++++ .||.|++|++..
T Consensus 338 v~~~~-~~~~~~l~s~~--~d~~v~iw~~~~ 365 (420)
T 3vl1_A 338 INNVY-FAAGALFVSSG--FDTSIKLDIISD 365 (420)
T ss_dssp EEEEE-EETTEEEEEET--TTEEEEEEEECC
T ss_pred ceEEE-eCCCCEEEEec--CCccEEEEeccC
Confidence 88874 56888999999 669999999765
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-34 Score=262.74 Aligned_cols=268 Identities=17% Similarity=0.228 Sum_probs=224.9
Q ss_pred ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeec
Q 010784 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 140 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~ 217 (501)
.++.+....+.+|.+.|++++| + ++++|++|+.||.|++|| .+.....+..|...|.+++|+
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~-------------~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~-- 68 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-V-------------DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD-- 68 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-E-------------ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--
T ss_pred cccHHHHHHhhCCCCCcEEEEe-c-------------CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--
Confidence 3445778899999999999999 7 789999999999999999 667778888999999999998
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
+++++|++|+.||.|++|++..... ......+.+|...|.++.|. ++++++++.||.|++|| .+
T Consensus 69 --~~~~~l~~~~~dg~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~------ 132 (313)
T 3odt_A 69 --SEKELLLFGGKDTMINGVPLFATSG---EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EG------ 132 (313)
T ss_dssp --TTTTEEEEEETTSCEEEEETTCCTT---SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TT------
T ss_pred --CCCCEEEEecCCCeEEEEEeeecCC---CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CC------
Confidence 8999999999999999999987542 12466778899999999994 45899999999999999 22
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~ 375 (501)
+....+..|...+.++.++| ++.++++++.++ |++||...
T Consensus 133 --------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 174 (313)
T 3odt_A 133 --------------------------------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK 174 (313)
T ss_dssp --------------------------------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE
T ss_pred --------------------------------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc
Confidence 12345566889999999988 899999999888 99999432
Q ss_pred CCCCCCCCCcccccC-cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784 376 SQDAVKPQPMAELDG-HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
....+.. |...|.+++|+|+ . +++++.||.|++||+.+++.+..+ ..|...|.+++|+|++ .|
T Consensus 175 --------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 175 --------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-----EGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp --------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTS-CE
T ss_pred --------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-----hcCCceEEEEEEecCC-CE
Confidence 2355666 8899999999999 7 777789999999999999999988 4678899999999999 58
Q ss_pred EEeecCCCceEEEeeccCCc--------------------cceeecCCCCceeeecccCCC
Q 010784 454 VTASYGEPGLLQFRDFSNAT--------------------CPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~~~--------------------~~~~s~~~d~~~~~w~~~~~~ 494 (501)
++++ .||.|++||+..+. ..+++++.|+.+++|++....
T Consensus 240 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 240 VSCG--EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEE--TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred EEEe--cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 8888 66999999965322 126678999999999987654
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.3e-35 Score=277.98 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=208.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc------eeeeccCCCCceEEEEee
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS------CQRCFKGHNGPVSTLSDK 215 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~------~~~~~~~h~~~v~~l~~s 215 (501)
.....+.+|.+.|++++|+| ++|++|+.||+|++|| .+. .+..+.+|...|.+++|+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---------------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---------------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---------------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---------------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe
Confidence 44567889999999999986 7999999999999999 444 577888999999999998
Q ss_pred ecCCCC----C---CEEEEeeCCCcEEEEeccCCCccccccceeeccCC-----CCceeEEEEe----ecCCeE-EEEEe
Q 010784 216 LLGDGS----G---KILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-----EKPIKLMSVA----GHKSFL-LVTIS 278 (501)
Q Consensus 216 ~~~~~~----~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~~-l~s~s 278 (501)
++ + ++|++|+.||.|++||+.++... .......+..| ...|.+++|+ | ++.+ |++++
T Consensus 72 ----~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~ 145 (397)
T 1sq9_A 72 ----QAIERDAFELCLVATTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATD 145 (397)
T ss_dssp ----EEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEE
T ss_pred ----cccccCCccccEEEEEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEe
Confidence 56 8 89999999999999999886520 00115677778 5899999999 8 6777 99999
Q ss_pred CCCeEEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784 279 KDSKVRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS 352 (501)
Q Consensus 279 ~dg~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~ 352 (501)
.||.|++||+++ ++.+.. .+...+.. .+.....|...|.+++
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~------------------~~~~~~~~--------------~~~~~~~~~~~i~~~~ 193 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNW------------------SPTLELQG--------------TVESPMTPSQFATSVD 193 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCC------------------CCEEEEEE--------------EECCSSSSCCCCCEEE
T ss_pred CCCcEEEEeCCccccccccceeec------------------cCcceeee--------------eeccccCCCCCceEEE
Confidence 999999999987 432210 00000000 0011134788899999
Q ss_pred EcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---c---ccCeEEEEecCC-eEEEEecCC---CcEEEEeCC
Q 010784 353 IMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---H---VGSVTQLHMDPY-KIVTGGRDD---LRINIWETD 421 (501)
Q Consensus 353 ~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~~~-~~l~~gs~d---g~i~iwd~~ 421 (501)
|+|++ ++++++.++ |++||+++++.. ..+.. | ...|.+++|+|+ .++++++.| |.|++||+.
T Consensus 194 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 194 ISERG-LIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp ECTTS-EEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred ECCCc-eEEEEeCCCcEEEEECCCCcee------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 99999 999999988 999999986544 77777 8 999999999999 888888899 999999999
Q ss_pred CcccccccccCCC--------CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 422 TGMLANSLLCNYP--------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 422 ~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+++.+..+..... ..|...|.+++|+|++++|++++ .||.|++||+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 321 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVK 321 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--TTSEEEEEETT
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--CCCeEEEEEcC
Confidence 9999888842000 00788999999999999999999 66999999964
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=269.84 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=216.5
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
..+..|..+|++++|++++.++++|+.|+.|++|++..+ .+....+.+|.+.|++++|++.. ++++|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~~l~ 73 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILA 73 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------GCSEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------CCCEEE
Confidence 346778899999999999999999999999999999721 46778899999999999998721 389999
Q ss_pred EeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 183 TSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 183 s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+|+.||.|++|| .++ .+..+..|...|.+++|+ ++ +.+|++++.||.|++||+..... .....+..
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~ 145 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDA 145 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEEC
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC----CCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecC
Confidence 999999999999 554 677788899999999997 66 89999999999999999988743 13446678
Q ss_pred CCCceeEEEEeec------------CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 257 HEKPIKLMSVAGH------------KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 257 ~~~~v~~l~~~~~------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
|...|.+++|+|. ++.++++++.||.|++||++++....
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------- 196 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------------------- 196 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----------------------------
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------------------------
Confidence 9999999999985 58899999999999999998764211
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM 400 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 400 (501)
.....+.+|...|.+++|+|+ +.+|++++.|+ |++||++++.... ...+.....|...|++++|
T Consensus 197 -----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 264 (379)
T 3jrp_A 197 -----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASW 264 (379)
T ss_dssp -----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEE
T ss_pred -----------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc-eeeeeccccCCCcEEEEEE
Confidence 223456778999999999999 89999999988 9999999864220 0112333458889999999
Q ss_pred cCC-eEEEEecCCCcEEEEeCCCc
Q 010784 401 DPY-KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 401 ~~~-~~l~~gs~dg~i~iwd~~~~ 423 (501)
+|+ +++++++.||.|++|++..+
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEET
T ss_pred cCCCCEEEEecCCCcEEEEeCCCC
Confidence 999 88888889999999998743
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-33 Score=271.11 Aligned_cols=309 Identities=17% Similarity=0.219 Sum_probs=239.2
Q ss_pred hhccccCCeeeEEEe---cCCCCceEEeeCCc----------EEEeecCC----eeeEEEEecc----------------
Q 010784 94 LQFKFVDPLDVCFYS---VAKPHDHILLDNND----------IFSTQGSS----IQNIKIDNFL---------------- 140 (501)
Q Consensus 94 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~----------~~~~~g~~----d~~i~vw~~~---------------- 140 (501)
..|+.+.+....+.. -..|..++.|-|+. .+++.|+. ...|.+.++.
T Consensus 26 ~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~ 105 (430)
T 2xyi_A 26 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNE 105 (430)
T ss_dssp HHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------
T ss_pred hhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccccc
Confidence 446665555543333 34457777777765 45666654 4567776543
Q ss_pred ----------cccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C----------Cce
Q 010784 141 ----------SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K----------GSC 198 (501)
Q Consensus 141 ----------~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~----------~~~ 198 (501)
++........+|.+.|++++|+|+ ++++|++++.||.|++|| . ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~ 173 (430)
T 2xyi_A 106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQ------------NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP 173 (430)
T ss_dssp ------------CEEEEEEEEESSCCSEEEEETT------------EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCC
T ss_pred ccccccccCCCCceEEEEEEcCCCcEEEEEECCC------------CCcEEEEECCCCcEEEEECCCcccccCccccCCC
Confidence 111113445689999999999993 368999999999999998 3 456
Q ss_pred eeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 276 (501)
+..+.+|...|.+++|+ +++. +|++|+.||.|++||+..+... ........+.+|...|.+++|+|.++.+|++
T Consensus 174 ~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 249 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWN----PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS 249 (430)
T ss_dssp SEEEECCSSCCCCEEEC----TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred cEEecCCCCCeEEEEeC----CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE
Confidence 77788999999999997 6777 9999999999999999874321 1112245667899999999999877889999
Q ss_pred EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784 277 ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS 356 (501)
Q Consensus 277 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~ 356 (501)
++.||.|++||++++.. .+.+..+..|...|++++|+|+
T Consensus 250 ~~~dg~i~i~d~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~i~~~p~ 288 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNT-----------------------------------------SKPSHTVDAHTAEVNCLSFNPY 288 (430)
T ss_dssp EETTSEEEEEETTCSCS-----------------------------------------SSCSEEEECCSSCEEEEEECSS
T ss_pred EeCCCeEEEEECCCCCC-----------------------------------------CcceeEeecCCCCeEEEEeCCC
Confidence 99999999999997631 0122345568899999999998
Q ss_pred Cc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc---------
Q 010784 357 KS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG--------- 423 (501)
Q Consensus 357 ~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~--------- 423 (501)
+. ++++|+.++ |++||+++.. .++..+..|...|++++|+|+ .++++++.||.|++||+...
T Consensus 289 ~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 289 SEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred CCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 86 788999888 9999999853 235888899999999999998 57888889999999999872
Q ss_pred -----ccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccC
Q 010784 424 -----MLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 424 -----~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~ 471 (501)
+++..+ .+|...|..++|+|+++ +|++++ .||.|++|++..
T Consensus 364 ~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~ 410 (430)
T 2xyi_A 364 EDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAE 410 (430)
T ss_dssp HHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECH
T ss_pred ccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEE--CCCCEEEeEccc
Confidence 334444 56788999999999999 888998 669999999864
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=269.97 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=217.1
Q ss_pred cceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeC---CCceEEec--CCceeee-ccCCCCceEEEEeeec
Q 010784 145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSC---DHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLL 217 (501)
Q Consensus 145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~---dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~ 217 (501)
....+.+|.+.|++++|+| ++. ++++|+. ||.|++|| .++.... ..+|...|.+++|+
T Consensus 10 ~~~~~~~h~~~v~~~~~~p-------------~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~-- 74 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVP-------------CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG-- 74 (357)
T ss_dssp EEEEEEECSSCEEEEEECT-------------TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECT--
T ss_pred hhhhccCCCCceEEEEEcC-------------CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEc--
Confidence 3455678999999999999 664 5566766 99999999 4444333 33799999999997
Q ss_pred CCCC---CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee-----cCCeEEEEEeCCCeEEEEECC
Q 010784 218 GDGS---GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG-----HKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 218 ~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~~l~s~s~dg~v~vwd~~ 289 (501)
++ +.+|++|+.||.|++||+.++.. ....+.+|...|.++.|.+ .++.+|++++.||.|++||++
T Consensus 75 --~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 75 --ATSLQQRYLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp --TCCTTTCCEEEEETTSCEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred --CCCCCCceEEEecCCCeEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence 55 79999999999999999998763 4778889999999997643 267899999999999999998
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC----CCcEEEEE----EcCCCcEEE
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC----KPILHSFS----IMPSKSLIC 361 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~v~~v~----~~~~~~~l~ 361 (501)
+++.. +..+..| ...+.+++ |+|++.+++
T Consensus 148 ~~~~~-------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 184 (357)
T 3i2n_A 148 QKDDP-------------------------------------------VANMEPVQGENKRDCWTVAFGNAYNQEERVVC 184 (357)
T ss_dssp SCSSC-------------------------------------------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEE
T ss_pred CCCCc-------------------------------------------ceeccccCCCCCCceEEEEEEeccCCCCCEEE
Confidence 87411 1112222 34788887 788999999
Q ss_pred EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC---C-eEEEEecCCCcEEEEeCCCcccccccccCCCCC
Q 010784 362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP---Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEE 436 (501)
Q Consensus 362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 436 (501)
+++.++ |++||+++++. .....|...|.+++|+| + .++++|+.||.|++||+++++.+..+......+
T Consensus 185 ~~~~d~~i~i~d~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRNMAL-------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp EEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred EEccCCeEEEEECccCce-------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 999988 99999998754 33456788999999999 7 888888899999999999988877763211126
Q ss_pred CCcceeeeEeecccc-EEEEeecCCCceEEEeeccC----------------------------------------Cccc
Q 010784 437 ADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN----------------------------------------ATCP 475 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~----------------------------------------~~~~ 475 (501)
|...|.+++|+|+++ +|++++ .||.|++||+.. .+..
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred CcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 788999999999998 899998 669999999763 2334
Q ss_pred ee-ecCCCCceeeecccCC
Q 010784 476 VL-KHEVQNDSKFWGPQCY 493 (501)
Q Consensus 476 ~~-s~~~d~~~~~w~~~~~ 493 (501)
++ +++.|+.+++|++...
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 55 7999999999998754
No 97
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=282.35 Aligned_cols=328 Identities=8% Similarity=-0.028 Sum_probs=220.6
Q ss_pred CCcceeEEEeeccCcC-------cccccC--------CCCcCcEEEEeeCCCceEEec--CCcee----eeccCCCCceE
Q 010784 152 HKARITCMRLFPLHET-------SLFRSE--------PQRTENVLVTSSCDHSIRLWW--KGSCQ----RCFKGHNGPVS 210 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~-------~~~~~~--------~~~~~~~l~s~~~dg~i~vwd--~~~~~----~~~~~h~~~v~ 210 (501)
+.+.|.+|+|+|++.. ..+++. .+|+++.|++++.|++|+||| .++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 6788999999997511 233221 245677888899999999999 44332 34667889999
Q ss_pred EEEeeecC--CCCCCEEEEeeCCCcEEEEeccCCCccc-----cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784 211 TLSDKLLG--DGSGKILASGGEDATVRLWSLSSSGKRG-----QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283 (501)
Q Consensus 211 ~l~~s~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v 283 (501)
+++|+|.. ++++.+|++|+.||+|++||+..+.... ...+...+.+|...|++++|++ + ..|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEE
Confidence 99998421 1236799999999999999998764210 1112346788999999999986 3 489999999999
Q ss_pred EEEECCCCccccceecccceecCCCceee--ecCCCe-EEEEe---CCcEEEEEcCCCceEeeeccCCC--cEEEEEEcC
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDM--KCHESM-LYIAS---GSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMP 355 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~---~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~ 355 (501)
++||++++..... ....+...+.++ .+.++. .++++ ++.+++||+++++.+..+.+|.. .|.+++|+|
T Consensus 290 ~lWD~~~~~~~~~----~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 290 AEFDLTDPEVPSF----YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp EEEETTBCSSCSE----EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred EEEECCCCCCceE----EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 9999987632111 112345666776 455543 33332 34899999999888777777653 588999999
Q ss_pred CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784 356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
+++.+++++.|+ |++||++++... .++.+|.+.|++++|+|+ +++++|+.||+|++||+..+ .+..+....
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~ 438 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS 438 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCC------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC----
T ss_pred CcCeEEEeCCCCcEEEEECcccccc------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc
Confidence 999999999888 999999987654 778899999999999999 88999999999999998653 333221100
Q ss_pred CCCCCcceeeeEeeccccEEEEeec-----------------CCCceEEEeeccCCc---cceeecCCCCceeeecccC
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASY-----------------GEPGLLQFRDFSNAT---CPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~-----------------d~~g~i~~w~~~~~~---~~~~s~~~d~~~~~w~~~~ 492 (501)
...+...+..++|+|+|+.+..... .+.+.|.--.+++.+ ..+++|+.+|.+|+|+++-
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 0112235778999999985532110 011112212244443 3688999999999999864
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-33 Score=266.87 Aligned_cols=249 Identities=16% Similarity=0.224 Sum_probs=210.5
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccC-CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
++.+++++.||.|++|| ++.....+.. |...|.+++|+ +++++|++|+.||.|++||+.++. .+..+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~ 172 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS----HDGSFLSVGLGNGLVDIYDVESQT------KLRTM 172 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC----TTSSEEEEEETTSCEEEEETTTCC------EEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC----CCCCEEEEECCCCeEEEEECcCCe------EEEEe
Confidence 35688889999999999 6666666554 89999999997 799999999999999999999876 47788
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
.+|...|.+++|. +.++++|+.||.|++||++...
T Consensus 173 ~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~------------------------------------------ 207 (401)
T 4aez_A 173 AGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIAN------------------------------------------ 207 (401)
T ss_dssp CCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS------------------------------------------
T ss_pred cCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCc------------------------------------------
Confidence 8999999999995 3599999999999999998542
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec-
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR- 410 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs- 410 (501)
..+..+.+|.+.|.+++|+|++.+|++|+.|+ |++||+++++.. ..+..|...|.+++|+|+ .++++|+
T Consensus 208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK------FTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE------EEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc------EEecCCcceEEEEEECCCCCCEEEEecC
Confidence 22345667899999999999999999999988 999999986544 778889999999999996 7888765
Q ss_pred -CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc-------------------
Q 010784 411 -DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS------------------- 470 (501)
Q Consensus 411 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~------------------- 470 (501)
.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++...+|.|++|++.
T Consensus 281 s~d~~i~i~d~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTVD------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEEE------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred CCCCEEEEEECCCCCEEEEEe------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence 79999999999999988883 3567999999999999999543267999999954
Q ss_pred ----CCccceeecCCCCceeeecccCCC
Q 010784 471 ----NATCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 471 ----~~~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
+++..+++++.|+.+++|++....
T Consensus 355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 355 SALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 344567889999999999997654
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-33 Score=266.68 Aligned_cols=248 Identities=19% Similarity=0.265 Sum_probs=209.2
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
+...|++|+|+|+|.++|+|+.|+.|++||+.++ +.+..+.+|...|.++.++ +.+|++|+.|+
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~---------------~~~l~sgs~d~ 209 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN---------------SYILSSGSRSG 209 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE---------------TTEEEEEETTS
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEEEEeCCCCceEEEeeC---------------CCEEEEEeCCC
Confidence 4556999999999999999999999999999985 8889999999999999885 48999999999
Q ss_pred ceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 189 SIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 189 ~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
.+++|| ....+..+.+|...+..+.|+ +++.++++++.|+.+++|+..++.. ....+.....|...|.+++
T Consensus 210 ~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~----~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 210 HIHHHDVRVAEHHVATLSGHSQEVCGLRWA----PDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEEC----TTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEE
T ss_pred ceeEeeecccceeeEEecccccceeeeeec----CCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeee
Confidence 999998 455667888999999999997 8999999999999999999987653 1123556778999999999
Q ss_pred EeecCCeEEEEE--eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 266 VAGHKSFLLVTI--SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 266 ~~~~~~~~l~s~--s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
|+|.+..+++++ +.|+.|++||+.+++.. ..+.
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--------------------------------------------~~~~- 318 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACL--------------------------------------------SAVD- 318 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETTTTEEE--------------------------------------------EEEE-
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCCccccc--------------------------------------------eeec-
Confidence 999777787765 47999999999887432 2222
Q ss_pred CCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784 344 CKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE 419 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd 419 (501)
+...+.++.|+|++..+++++ .|+ |++||+.+++.+ .++.+|.+.|++++|+|+ .+|++|+.|++|+|||
T Consensus 319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v------~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV------AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 346688999999988887764 667 999999987654 899999999999999999 8899999999999999
Q ss_pred CCCccccccc
Q 010784 420 TDTGMLANSL 429 (501)
Q Consensus 420 ~~~~~~~~~~ 429 (501)
+....+....
T Consensus 393 v~~~~~~~~~ 402 (420)
T 4gga_A 393 CFELDPARRR 402 (420)
T ss_dssp CSCSSCC---
T ss_pred CCCCCccchh
Confidence 9877666555
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=289.72 Aligned_cols=258 Identities=15% Similarity=0.179 Sum_probs=214.7
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.+..|..+|++++|+|++.++++|+.||.|++|++.++ .+....+.+|.+.|++++|+|+. ++++|++
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~~~~l~s 72 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILAS 72 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------SCSEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------CCCEEEE
Confidence 45678889999999999999999999999999999732 46778899999999999999821 3899999
Q ss_pred eeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 184 SSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
|+.||+|++|| .+. .+..+.+|...|.+++|+ ++ ++++++|+.||.|++||+.++.. .....+.+|
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s----p~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~ 144 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAH 144 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECC
T ss_pred EeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC----CCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecC
Confidence 99999999999 544 677788999999999997 66 89999999999999999988742 134566789
Q ss_pred CCceeEEEEeec------------CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784 258 EKPIKLMSVAGH------------KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325 (501)
Q Consensus 258 ~~~v~~l~~~~~------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
...|.+++|+|. ++..+++|+.||.|++||++++...
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------- 193 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------- 193 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------
Confidence 999999999984 4789999999999999999876321
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
......+.+|...|.+++|+|+ +.++++|+.|+ |++||+++++... ...+.....|...|++++|+
T Consensus 194 ---------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 194 ---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWS 263 (753)
T ss_dssp ---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-BCCBSSSSCCSSCCCCEEEC
T ss_pred ---------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-eeEEeccCCCCCceEEEEEc
Confidence 1233466789999999999999 99999999998 9999999864220 11234455688999999999
Q ss_pred CC-eEEEEecCCCcEEEEeCCC
Q 010784 402 PY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
|+ .++++|+.||.|++|++.+
T Consensus 264 pdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 264 LSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCEEEEEcCCCEEEEEecCC
Confidence 99 8888889999999999984
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-32 Score=265.12 Aligned_cols=256 Identities=20% Similarity=0.418 Sum_probs=215.6
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS 227 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s 227 (501)
.+|...|+++++ ++++|++|+.||+|++|| +++.+..+.+|.+.|.+++| ++++|++
T Consensus 130 ~~~~~~v~~~~~---------------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~------~~~~l~s 188 (435)
T 1p22_A 130 SETSKGVYCLQY---------------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY------DERVIIT 188 (435)
T ss_dssp CSSCCCEEEEEC---------------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC------CSSEEEE
T ss_pred cCCCCcEEEEEE---------------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE------CCCEEEE
Confidence 456778998887 578999999999999999 77888999999999999997 5789999
Q ss_pred eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784 228 GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG 307 (501)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 307 (501)
|+.||.|++||+.+++ .+..+.+|...|.++++++ ..+++|+.||.|++||+++++..
T Consensus 189 g~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~------------- 246 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGE------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI------------- 246 (435)
T ss_dssp EETTSCEEEEESSSCC------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC-------------
T ss_pred EcCCCeEEEEECCCCc------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc-------------
Confidence 9999999999999886 4788889999999999963 48999999999999999876431
Q ss_pred CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784 308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
.....+.+|...|.++++ +++++++|+.|+ |++||+++++.. .
T Consensus 247 ----------------------------~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~------~ 290 (435)
T 1p22_A 247 ----------------------------TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV------R 290 (435)
T ss_dssp ----------------------------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE------E
T ss_pred ----------------------------eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE------E
Confidence 112345678899999999 788999999888 999999987654 8
Q ss_pred cccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 387 ELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 387 ~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
.+.+|...|.++.+++ .++++|+.||.|++||+.+++++.++ .+|...|.+++| ++++|++|+ .||.|++
T Consensus 291 ~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~--~~~~l~sg~--~dg~i~v 360 (435)
T 1p22_A 291 TLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGA--YDGKIKV 360 (435)
T ss_dssp EEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEE--TTSCEEE
T ss_pred EEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEE-----eCCcCcEEEEEe--cCCEEEEEe--CCCcEEE
Confidence 8889999999999965 46666679999999999999999999 567888999998 889999999 6699999
Q ss_pred eeccCC----------------------------ccceeecCCCCceeeecccCCC
Q 010784 467 RDFSNA----------------------------TCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 467 w~~~~~----------------------------~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
||+..+ +..+++++.||.+++|++....
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 997432 2347799999999999997654
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=288.73 Aligned_cols=262 Identities=19% Similarity=0.175 Sum_probs=213.7
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
...+.+|.+.|++++|+| ++++|++|+.||+|+||| .+..+..+.+|.++|++++|+ ++
T Consensus 2 ~~~l~gH~~~V~~l~~s~-------------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s----~~ 64 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDY-------------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA----HP 64 (753)
T ss_dssp ------CCCCEEEECCCS-------------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CT
T ss_pred eeecccCcceeEEEEECC-------------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEec----CC
Confidence 356789999999999999 889999999999999998 345677889999999999997 45
Q ss_pred --CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 222 --GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 222 --~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
+++|++|+.||.|++||+.++.. .....+.+|...|.+++|+|.. +..+++|+.||.|++||++++....
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--- 137 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--- 137 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc----cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---
Confidence 89999999999999999998641 2466778899999999999842 7899999999999999998763211
Q ss_pred cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-------------CCcEEEEEcC
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-------------SKSLICTGGI 365 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-------------~~~~l~~~~~ 365 (501)
...+.+|...|.+++|+| ++.++++|+.
T Consensus 138 ---------------------------------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 138 ---------------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp ---------------------------------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred ---------------------------------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 123456889999999999 5899999998
Q ss_pred Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
|+ |++||++++... ..+...+.+|...|++++|+|+ .++++|+.||.|++||+.+++............|...
T Consensus 179 dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 256 (753)
T 3jro_A 179 DNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256 (753)
T ss_dssp TSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC
T ss_pred CCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc
Confidence 88 999999987543 2445678899999999999997 7888889999999999998753222222222457889
Q ss_pred eeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
|.+++|+|+|++|++|+ .||.|++|++..+..
T Consensus 257 v~~l~~spdg~~l~s~s--~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 257 LWRASWSLSGNVLALSG--GDNKVTLWKENLEGK 288 (753)
T ss_dssp CCCEEECTTTCCEEEEC--SSSCEECCBCCSSSC
T ss_pred eEEEEEcCCCCEEEEEc--CCCEEEEEecCCCCC
Confidence 99999999999999999 669999999986543
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=263.81 Aligned_cols=295 Identities=14% Similarity=0.168 Sum_probs=224.9
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec------
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF------ 202 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~------ 202 (501)
++.+++|++..+ +....+.+|.+.|++++|+|. ++++|++|+.||.|++|| .+.....+
T Consensus 22 ~~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 22 ESTRRVLGLELN-KDRDVERIHGGGINTLDIEPV------------EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHTEEEC-TTEEECCCCSSCEEEEEECTT------------TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred cCcceeeccccC-cceeeeeccCCcEEEEEEecC------------CCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence 456778888774 777888999999999999983 579999999999999999 33333332
Q ss_pred -------cCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec--CCe
Q 010784 203 -------KGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH--KSF 272 (501)
Q Consensus 203 -------~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~ 272 (501)
.+|...|.+++|+ + ++.+|++++.||.|++||+.++.. ...+. +...+.++.+.+. ++.
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWY----PHDTGMFTSSSFDKTLKVWDTNTLQT------ADVFN-FEETVYSHHMSPVSTKHC 157 (408)
T ss_dssp EECTTCTTCCSSCEEEEEEC----TTCTTCEEEEETTSEEEEEETTTTEE------EEEEE-CSSCEEEEEECSSCSSCC
T ss_pred cccccccccCCCcEEEEEEc----cCCCcEEEEEeCCCeEEEeeCCCCcc------ceecc-CCCceeeeEeecCCCCCc
Confidence 2599999999997 5 778999999999999999998763 44444 7788999999874 344
Q ss_pred EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784 273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS 352 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~ 352 (501)
++++++.||.|++||+++++. +..+..|...|.+++
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~--------------------------------------------~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSC--------------------------------------------SHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCC--------------------------------------------CEEECCCCSCEEEEE
T ss_pred EEEEEcCCCeEEEEeCCCcce--------------------------------------------eeeecCCCCcEEEEE
Confidence 999999999999999987643 234566889999999
Q ss_pred EcCCCc-EEEEEcCCc-EEEEecCCCCCCC----------CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784 353 IMPSKS-LICTGGIGK-AMTWDIRRSQDAV----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE 419 (501)
Q Consensus 353 ~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd 419 (501)
|+|++. ++++++.|+ |++||+++..... ..........|...|++++|+|+ .++++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999988 688999888 9999998765220 01122334678999999999999 8888889999999999
Q ss_pred CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc---------------------CCccceee
Q 010784 420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS---------------------NATCPVLK 478 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~---------------------~~~~~~~s 478 (501)
+.+++....+..+........+........+..+++++ .++.|++||+. +.+..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEe--cCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 99988776664333222222333333334455566666 45899999854 34456789
Q ss_pred cCCCCceeeecccCCCC
Q 010784 479 HEVQNDSKFWGPQCYSD 495 (501)
Q Consensus 479 ~~~d~~~~~w~~~~~~~ 495 (501)
++.||.+++|++.....
T Consensus 352 ~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EETTSCEEEEEECC---
T ss_pred ECCCCeEEEEeCCCCCc
Confidence 99999999999987643
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.4e-33 Score=265.29 Aligned_cols=306 Identities=12% Similarity=0.069 Sum_probs=196.4
Q ss_pred EEEeecCCeeeEEEEecccccc--------cceecccCCcceeEEEeeccCc-------CcccccCCCCcCcEEEEeeCC
Q 010784 123 IFSTQGSSIQNIKIDNFLSESY--------YRATLSDHKARITCMRLFPLHE-------TSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~~~d 187 (501)
.+++.| .++.|.+|+...... .....-.|...+..+.|++... .......+++++.+|++|+.|
T Consensus 32 ~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 32 NLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 345555 467788887643110 0011123555677777765321 112223345578899999999
Q ss_pred CceEEec--CCc-----eeeeccCCCCceEEEEeeecC----CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 188 HSIRLWW--KGS-----CQRCFKGHNGPVSTLSDKLLG----DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 188 g~i~vwd--~~~-----~~~~~~~h~~~v~~l~~s~~~----~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++|+||| .+. .+..+.+|.+.|++++|+|.. ..++++|++|+.|++|++||+.++. ....+..
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~------~~~~~~~ 184 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG------PILAGYP 184 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE------EEEEEEE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc------eeeeecC
Confidence 9999999 433 234578999999999998532 1378899999999999999998766 3666778
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|..+|.+++|+|.+..+|++|+.|+.|++||+++++.......... ........ .+.....
T Consensus 185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-~~~~~~~s------------------~~~~~~~ 245 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-VKNPWLLT------------------LNTLPLV 245 (393)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEE------------------EESGGGC
T ss_pred CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-cccceEEe------------------cccccce
Confidence 9999999999996667999999999999999998765332111000 00001111 1111111
Q ss_pred eEeeeccCCCcEEEEEEc-CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE----------------
Q 010784 337 KVMTPAICKPILHSFSIM-PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL---------------- 398 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l---------------- 398 (501)
......+|...+.++.|+ |+++.+++++.|+ +++||+..++.. ..+..|...+..+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecCccccEEEccccccccccCcce
Confidence 122334678889999987 7999999999998 999999886543 3333333333332
Q ss_pred --EecC--C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 399 --HMDP--Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 399 --~~~~--~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.++| + .++++|+.||.|++||+.+++.+..+ ..|...|.+++|+|||++||+++ ++|. .+|.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~V~svafspdG~~LA~as--~~Gv-~lvr 386 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMPIVDFCWHQDGSHLAIAT--EGSV-LLTR 386 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSCEEEEEECTTSSEEEEEE--SSEE-EEEE
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCcEEEEEEcCCCCEEEEEe--CCCe-EEEE
Confidence 2333 2 57888999999999999999888877 45677899999999999999998 4464 4443
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-32 Score=262.08 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=221.3
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccc---cceecc-------------------------------------
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---YRATLS------------------------------------- 150 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~------------------------------------- 150 (501)
.++++++|+++|.+++++ .++.|++||+.++ + .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSP-NHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETT-TEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCC-CcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 578999999999977766 4678999999886 4 344443
Q ss_pred -----------------cCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec-C---Cceeeecc--CCC
Q 010784 151 -----------------DHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW-K---GSCQRCFK--GHN 206 (501)
Q Consensus 151 -----------------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd-~---~~~~~~~~--~h~ 206 (501)
+|.+.|++++|+| ++++| ++|+.||.|++|| . +..+..+. .|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-------------DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECT-------------TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC-------------CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC
Confidence 3444799999998 78886 8999999999998 3 45666665 577
Q ss_pred CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC---CeEEEEEeCCCeE
Q 010784 207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK---SFLLVTISKDSKV 283 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~s~s~dg~v 283 (501)
..|.+++|+ +++++|++|+.||.|++|++.++.... .....+.+|...|.+++|+| + +.+|++|+.|+.|
T Consensus 150 ~~v~~~~~s----p~~~~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i 222 (450)
T 2vdu_B 150 KRPNAISIA----EDDTTVIIADKFGDVYSIDINSIPEEK--FTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHI 222 (450)
T ss_dssp SCEEEEEEC----TTSSEEEEEETTSEEEEEETTSCCCSS--CCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCE
T ss_pred CCceEEEEc----CCCCEEEEEeCCCcEEEEecCCccccc--ccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcE
Confidence 899999997 899999999999999999998765300 02336778999999999998 6 8899999999999
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
++||+++++.+. ..+.+|...|.+++|+ ++++|+++
T Consensus 223 ~vwd~~~~~~~~-------------------------------------------~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 223 KISHYPQCFIVD-------------------------------------------KWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp EEEEESCTTCEE-------------------------------------------EECCCCSSCEEEEEEC-STTEEEEE
T ss_pred EEEECCCCceee-------------------------------------------eeecCCCCceEEEEEC-CCCEEEEE
Confidence 999998764311 1144688999999999 99999999
Q ss_pred cCCc-EEEEecCCCCCCCCCCCccccc-------------------------CcccCeEEEEecCC-eEEEEec-CCCcE
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAELD-------------------------GHVGSVTQLHMDPY-KIVTGGR-DDLRI 415 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~-------------------------~h~~~v~~l~~~~~-~~l~~gs-~dg~i 415 (501)
+.|+ |++||+++++.+ ..+. .....|.+++|+|+ +++++++ .|+.|
T Consensus 259 ~~d~~v~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNL------STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp ESSSEEEEEETTTCCEE------EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred eCCCeEEEEECCCCcEe------eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 9998 999999987654 3332 22457899999999 7777766 89999
Q ss_pred EEEeC--CCc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEeeccCCc
Q 010784 416 NIWET--DTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFRDFSNAT 473 (501)
Q Consensus 416 ~iwd~--~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w~~~~~~ 473 (501)
++|++ .++ +.+..+. .+ ..+.+++|+|++.++++++.+ .+..|.+|.+....
T Consensus 333 ~iw~~~~~~~~~l~~~~~~~-----~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 333 IILEMSEKQKGDLALKQIIT-----FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp EEEEECSSSTTCEEEEEEEE-----CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred EEEEeccCCCCceeeccEec-----cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 99999 555 5566663 33 679999999965444444421 14568999887654
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=266.91 Aligned_cols=266 Identities=11% Similarity=0.158 Sum_probs=203.9
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc-----------eeeeccCCC-----------
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS-----------CQRCFKGHN----------- 206 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~-----------~~~~~~~h~----------- 206 (501)
.|.+.|++++|+| ++++|++|+.||.|+||| .+. ....+.+|.
T Consensus 26 ~~~~~V~~v~~s~-------------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 26 AEADIISTVEFNH-------------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp CGGGSEEEEEECS-------------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred cccCcEEEEEECC-------------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccc
Confidence 4678999999999 899999999999999999 333 467788998
Q ss_pred -CceEEEEeeecCCCCC--CEEEEeeCCCcEEEEeccCCCcccc---------------------c------------cc
Q 010784 207 -GPVSTLSDKLLGDGSG--KILASGGEDATVRLWSLSSSGKRGQ---------------------Q------------AL 250 (501)
Q Consensus 207 -~~v~~l~~s~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~---------------------~------------~~ 250 (501)
..|.+++|+ +++ .+|++|+.||.|++||+.++..... . ..
T Consensus 93 ~~~V~~l~~~----~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 93 EEKINKIRWL----PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp CCCCCEEEEC----CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred cCceEEEEEc----CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 889999997 666 7999999999999999976432000 0 00
Q ss_pred e-eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 251 K-ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 251 ~-~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
. ....+|...|.+++|+| ++.+|++| .|+.|++||+++.... +.+
T Consensus 169 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~--------------------------------~~~ 214 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRS--------------------------------FNI 214 (447)
T ss_dssp EEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEE--------------------------------EEE
T ss_pred eEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCce--------------------------------eee
Confidence 1 12468999999999998 78899998 7999999999843210 011
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc------------Ce
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG------------SV 395 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v 395 (501)
+++. ...+.+|...|.+++|+|++ ++|++|+.|+ |++||+++++.. ...+..+..|.. .|
T Consensus 215 ~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (447)
T 3dw8_B 215 VDIK----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC--DRHSKLFEEPEDPSNRSFFSEIISSI 288 (447)
T ss_dssp EECC----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS--CTTCEEECCC-----CCHHHHHTTCE
T ss_pred eecc----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc--cceeeEeccCCCccccccccccCceE
Confidence 1111 01356789999999999998 9999999999 999999987753 233467777775 89
Q ss_pred EEEEecCC-eEEEEecCCCcEEEEeCCC-cccccccccCCCCCC-------Cc---ceeeeEeeccccEEEEeecCCCce
Q 010784 396 TQLHMDPY-KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEA-------DI---STGCSAMAVSGCRIVTASYGEPGL 463 (501)
Q Consensus 396 ~~l~~~~~-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~-------~~---~v~~~~~s~~g~~l~s~~~d~~g~ 463 (501)
++++|+|+ +++++++. +.|++||+.+ ++++.++..+..... .. .+..++|+|++++|++|+ .||.
T Consensus 289 ~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s--~dg~ 365 (447)
T 3dw8_B 289 SDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS--YNNF 365 (447)
T ss_dssp EEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC--STTE
T ss_pred EEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec--cCCE
Confidence 99999999 88888877 9999999997 888888854321000 00 133489999999999999 6699
Q ss_pred EEEeeccCCccce
Q 010784 464 LQFRDFSNATCPV 476 (501)
Q Consensus 464 i~~w~~~~~~~~~ 476 (501)
|++||+..+....
T Consensus 366 v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 366 FRMFDRNTKRDIT 378 (447)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEEcCCCccee
Confidence 9999998876543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9e-33 Score=260.46 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=220.3
Q ss_pred EEEecCCCCceEEeeCC---cEEEeecCCeeeEEEEeccc-ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 105 CFYSVAKPHDHILLDNN---DIFSTQGSSIQNIKIDNFLS-ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~---~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
.+..|...|++++|+|+ |.++++|+.|+.|++||+.+ +......+.+|.+.|++++|+| ++++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~ 100 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-------------DGSK 100 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-------------TSSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-------------CCCE
Confidence 34567788999999999 69999999999999999997 4444478899999999999999 8999
Q ss_pred EEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 181 LVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 181 l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
|++++.||.|++|| .......+..|...|.+++|++ .+++.+|++|+.||.|++||+.++. .+..+..+.
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~- 171 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK--APNYSCVMTGSWDKTLKFWDTRSSN------PMMVLQLPE- 171 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEE--CSSCEEEEEEETTSEEEEECSSCSS------CSEEEECSS-
T ss_pred EEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEe--CCCCCEEEEccCCCcEEEEECCCCc------EEEEEecCC-
Confidence 99999999999999 3333444667999999999932 2788999999999999999999876 356666554
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEe-CCcEEEEEcCC
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIAS-GSSVVTIDLRT 334 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~d~~~ 334 (501)
.+.++.+.+ ..+++++.++.+++|+++......... ............+.... +.++.++ ++.+.+||++.
T Consensus 172 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 172 RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 566666653 378888999999999998764322111 00011112222222222 2244443 35899999998
Q ss_pred C---ceEeeeccCCC------------cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 335 M---QKVMTPAICKP------------ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 335 ~---~~~~~~~~~~~------------~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
. ..+..+..|.. .|.+++|+|++++|++++.|+ |++||+.+++.+ ..+.+|...|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL------KTSEQLDQPISAC 321 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE------EECCCCSSCEEEE
T ss_pred CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE------EEecCCCCCceEE
Confidence 7 55667777765 799999999999999999888 999999987654 8888999999999
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCC
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
+|+|+ ++|++++.|+..+.|++.+
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EECCCCCeEEEEecccccccccccC
Confidence 99999 8888888888665555443
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.4e-32 Score=261.03 Aligned_cols=258 Identities=17% Similarity=0.287 Sum_probs=213.1
Q ss_pred eEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc---------cccceecccCCcceeEEEeeccCcCcccccC
Q 010784 104 VCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE---------SYYRATLSDHKARITCMRLFPLHETSLFRSE 173 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~---------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 173 (501)
.....|...|++++++|+ +.++++|+.+|.|++|++.+. ......+.+|...|++++|+|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---------- 191 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP---------- 191 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT----------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC----------
Confidence 456778889999999997 789999999999999999862 367788899999999999999
Q ss_pred CCCcCc-EEEEeeCCCceEEec--CCce-------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784 174 PQRTEN-VLVTSSCDHSIRLWW--KGSC-------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243 (501)
Q Consensus 174 ~~~~~~-~l~s~~~dg~i~vwd--~~~~-------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 243 (501)
++. +|++|+.||.|++|| .+.. ...+.+|...|.+++|+| .++.+|++++.||.|++||++++.
T Consensus 192 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p---~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 192 ---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL---LHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp ---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEETTCSC
T ss_pred ---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC---CCCCEEEEEeCCCeEEEEECCCCC
Confidence 566 999999999999999 2111 455678999999999972 267899999999999999999763
Q ss_pred ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784 244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323 (501)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
. ......+..|...|++++|+|.+..++++|+.||.|++||+++..
T Consensus 266 ~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~------------------------------- 311 (430)
T 2xyi_A 266 T---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK------------------------------- 311 (430)
T ss_dssp S---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------------------------
T ss_pred C---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------------------------
Confidence 1 114666778999999999998666689999999999999998742
Q ss_pred CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCC--------CCCCcccccCccc
Q 010784 324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAV--------KPQPMAELDGHVG 393 (501)
Q Consensus 324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~--------~~~~~~~~~~h~~ 393 (501)
+.+..+..|...|.+++|+|++ .+|++++.|+ |++||+....... ....+..+.+|..
T Consensus 312 ------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 312 ------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp ------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred ------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 1234556789999999999998 4788888888 9999998743210 0234567788999
Q ss_pred CeEEEEecCC-e-EEEEecCCCcEEEEeCCCc
Q 010784 394 SVTQLHMDPY-K-IVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 394 ~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~ 423 (501)
.|++++|+|+ . ++++++.||.|++|++...
T Consensus 380 ~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999999 6 8999999999999999754
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.1e-32 Score=251.05 Aligned_cols=258 Identities=13% Similarity=0.068 Sum_probs=204.7
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc---eeeeccCCCCceEEEEeeecCCCC
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
....+|.+.|++++|+| ++++|++++.||.|++|| .+. ....+.+|...|.+++|+ ++
T Consensus 5 ~~~~~h~~~v~~~~~s~-------------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIP-------------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI----DN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEG-------------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE----ES
T ss_pred ecccCCCCcEEEEEEcC-------------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC----CC
Confidence 34568999999999999 889999999999999999 333 245566899999999998 78
Q ss_pred CC-EEEEeeCCCcEEEEec-cCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 222 GK-ILASGGEDATVRLWSL-SSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 222 ~~-~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
++ +|++|+.||.|++||+ .++. ...+.+ |...|.+++|+| +..+++++.|+.|++||+++.......
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPS-------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSS-------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCc-------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEccccccccccc
Confidence 99 9999999999999999 7764 467778 999999999997 779999999999999998761100000
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC-
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR- 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~- 375 (501)
..++.+..+. |...|.+++|+|++ +++++.++ |++||+++
T Consensus 139 -----------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 139 -----------------------------------VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp -----------------------------------EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCC
T ss_pred -----------------------------------ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcc
Confidence 0001112223 67889999999887 88888777 99999998
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCc------ccccccccCCC----CCCCcceee
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTG------MLANSLLCNYP----EEADISTGC 443 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~------~~~~~~~~~~~----~~~~~~v~~ 443 (501)
.... .......|...|.+++|+| + .++++++.||.|++|++... +....+..+.. ..|...|.+
T Consensus 181 ~~~~----~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (342)
T 1yfq_A 181 EDDN----GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp TTCC----CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred cccc----ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE
Confidence 5432 1234456788999999999 8 88888899999999999887 77777754321 123558999
Q ss_pred eEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 444 SAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
++|+|++++|++++ .||.|++||+..+..
T Consensus 257 ~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 257 IEFSPRHKFLYTAG--SDGIISCWNLQTRKK 285 (342)
T ss_dssp EEECTTTCCEEEEE--TTSCEEEEETTTTEE
T ss_pred EEEcCCCCEEEEec--CCceEEEEcCccHhH
Confidence 99999999999999 669999999875543
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-32 Score=253.38 Aligned_cols=269 Identities=8% Similarity=0.030 Sum_probs=204.1
Q ss_pred eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC
Q 010784 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG 196 (501)
Q Consensus 118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~ 196 (501)
+..++.++++|+.|+.|++||+.++ +.+..+. ...|.++.|+| + +++++.|++|++|+ .+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~-------------~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHP-------------A---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCC-------------S---EEEECSTTEEEEEETTT
T ss_pred hcCCCCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCC-------------c---eEEecCCCeEEEEEccC
Confidence 3468899999999999999999985 6566655 46677788877 4 99999999999996 21
Q ss_pred ----------ceeeec-cCCCCceEEEEeeecCCC--CCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCcee
Q 010784 197 ----------SCQRCF-KGHNGPVSTLSDKLLGDG--SGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIK 262 (501)
Q Consensus 197 ----------~~~~~~-~~h~~~v~~l~~s~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~ 262 (501)
..+..+ .+|.++|.+++|+ + +++++++|+.||.|++||+.++.. .... ..|...|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGH----NEVNTEYFIWADNRGTIGFQSYEDDSQ------YIVHSAKSDVEYS 174 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECC----C---CCEEEEEETTCCEEEEESSSSCE------EEEECCCSSCCCC
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcC----CCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEecCCCCceE
Confidence 213333 2677899999997 7 899999999999999999998763 3433 34566899
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
+++|+| ++.+|++|+.||.|++||+++++... ..+.
T Consensus 175 ~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~ 210 (343)
T 3lrv_A 175 SGVLHK-DSLLLALYSPDGILDVYNLSSPDQAS-------------------------------------------SRFP 210 (343)
T ss_dssp EEEECT-TSCEEEEECTTSCEEEEESSCTTSCC-------------------------------------------EECC
T ss_pred EEEECC-CCCEEEEEcCCCEEEEEECCCCCCCc-------------------------------------------cEEe
Confidence 999998 78899999999999999999875320 2344
Q ss_pred c-CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeE--EEEecCC-eEEEEecC-CCcEEE
Q 010784 343 I-CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPY-KIVTGGRD-DLRINI 417 (501)
Q Consensus 343 ~-~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~-~~l~~gs~-dg~i~i 417 (501)
. |.+.|.+++|+|++.+|++++++.|++||+++.+.. ..+..+..|...+. +++|+|+ +++++++. |+.|++
T Consensus 211 ~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 211 VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT---LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC---BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc---eeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 5 889999999999999999999666999999987654 11222333444444 6999999 88888777 999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceEEEeeccCCc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
|++......... ..+..++|++ +++.+++++ .+|.+.++-...+.
T Consensus 288 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~--~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 288 YKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVC--GDGGIAAILKTNDS 335 (343)
T ss_dssp EEECTTTCSEEE---------EEEEECCC----CCCCEEEEEE--ETTEEEEEEECSSE
T ss_pred EEEcccccceEe---------cCceeEecCccccccceeEEEe--cCCceEEEEecCCe
Confidence 999765433222 3577888988 888999998 55888887655444
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9e-31 Score=241.62 Aligned_cols=259 Identities=17% Similarity=0.281 Sum_probs=213.6
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
.++|+||+ + ++|++| .|++|+||| ++++++.+ .+|...|++++|+ +++++|++|+.|
T Consensus 28 ~~~l~WS~-------------~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~----~~~~~l~sgs~D 88 (318)
T 4ggc_A 28 LNLVDWSS-------------G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI----KEGNYLAVGTSS 88 (318)
T ss_dssp CBCEEECT-------------T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC----TTSSEEEEEETT
T ss_pred ceEEEECC-------------C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC----CCCCEEEEEECC
Confidence 57799998 4 467665 599999999 77777665 4678889999997 899999999999
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
|+|++||+.+++ .+..+.+|...+.++.+. +..+++++.++.+++|+.....
T Consensus 89 g~v~iw~~~~~~------~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~------------------- 140 (318)
T 4ggc_A 89 AEVQLWDVQQQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAE------------------- 140 (318)
T ss_dssp SEEEEEETTTTE------EEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS-------------------
T ss_pred CcEEEeecCCce------eEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCc-------------------
Confidence 999999999876 578888999988876654 4589999999999999987653
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
..+..+.+|...+..+.++++++++++++.|+ |++||+++++.. .........
T Consensus 141 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~ 194 (318)
T 4ggc_A 141 ------------------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQ 194 (318)
T ss_dssp ------------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECC
T ss_pred ------------------------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc--ccceeeecc
Confidence 23345667899999999999999999999999 999999987754 344566677
Q ss_pred cccCeEEEEecCC--e--EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 391 HVGSVTQLHMDPY--K--IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 391 h~~~v~~l~~~~~--~--~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
|.+.|.+++++|. . .+++++.++.|++||.......... .+...+..+.|+++++.+++++...|+.|++
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV------DAHSQVCSILWSPHYKELISGHGFAQNQLVI 268 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE------ECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc------cceeeeeeeeecccccceEEEEEcCCCEEEE
Confidence 8889999999887 3 3456788999999999988776665 3456789999999999988876546799999
Q ss_pred eecc---------------------CCccceeecCCCCceeeecccCC
Q 010784 467 RDFS---------------------NATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 467 w~~~---------------------~~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
||+. +.+..+++++.|+++++|++...
T Consensus 269 wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 269 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9954 34566889999999999998643
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.2e-31 Score=249.12 Aligned_cols=290 Identities=8% Similarity=0.076 Sum_probs=200.4
Q ss_pred EEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEE
Q 010784 136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLS 213 (501)
Q Consensus 136 vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~ 213 (501)
+|++.+ .+.+..+.+|.+.|++++|+| +|++|++|+.+| ++||| .+...... +...+..++
T Consensus 3 i~s~~~-~~~~~~~~~h~~~V~~v~fs~-------------dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~ 65 (355)
T 3vu4_A 3 LGSMIT-RNPIVPENHVSNPVTDYEFNQ-------------DQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVR 65 (355)
T ss_dssp -----------------CCCCCEEEECT-------------TSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEE
T ss_pred cccccc-cCCccccccCCCceEEEEECC-------------CCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEE
Confidence 345555 366667789999999999999 899999998775 78999 33333322 223477777
Q ss_pred eeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC-
Q 010784 214 DKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS- 291 (501)
Q Consensus 214 ~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~- 291 (501)
+. ++++.+ ++|+.|+.|++||+.+++ .+..+. +...|.++.+++ + .++++ .|+.|++||+.++
T Consensus 66 ~~----~~~~~~~~~~~~d~~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 66 ML----HRTNYVAFVTGVKEVVHIWDDVKKQ------DVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp EC----TTSSEEEEECSSTTEEEEEETTTTE------EEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTC
T ss_pred Ec----CCCCEEEEEECCccEEEEEECCCCc------EEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCc
Confidence 75 455555 678888999999999876 355555 677899999975 2 34444 4789999999987
Q ss_pred ccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCc----------------eEeeeccCCCcEEEEE
Q 010784 292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQ----------------KVMTPAICKPILHSFS 352 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~----------------~~~~~~~~~~~v~~v~ 352 (501)
+.+..... ......+ .+..+.++++ +.|++||+++++ .+..+.+|.+.|.+++
T Consensus 131 ~~~~~~~~------~~~~~~~--s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 131 KRITDDIR------FGGVCEF--SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp CBSSCCEE------EEEEEEE--ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred eeeEEecc------CCceEEE--EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence 54433222 1112222 2244444423 489999999865 2678889999999999
Q ss_pred EcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCccccc-C-cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784 353 IMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELD-G-HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN 427 (501)
Q Consensus 353 ~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~ 427 (501)
|+|++++|++|+.|+ |++||+++++.+ .++. + |...|++++|+|+ +++++++.|++|++||+.++....
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTEDGVLV------REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTTCCEE------EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEE------EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence 999999999999665 999999987654 7777 5 9999999999999 999999999999999997653211
Q ss_pred --cccc----------------CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 428 --SLLC----------------NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 428 --~~~~----------------~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.+.. ..+.........++|++||++|++++ .||.+++|++..++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~--~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP--HTRMIETFKVVFDD 338 (355)
T ss_dssp SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET--TTTEEEEEEEEEET
T ss_pred cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe--CCCeEEEEEEEcCC
Confidence 1100 00111222346789999999999999 66999999987654
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.5e-31 Score=247.50 Aligned_cols=291 Identities=15% Similarity=0.180 Sum_probs=211.0
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC----ceeeeccCCCCceEEEEeeecCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG----SCQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~----~~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
...+.+|.+.|++++|+| ++++|++|+.||.|++|| .+ .....+.+|...|.+++|+
T Consensus 4 ~~~~~gH~~~v~~~~~~~-------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~---- 66 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDF-------------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA---- 66 (351)
T ss_dssp CCEECCCSSCEEEEEECS-------------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEEC----
T ss_pred cccCcccccceeEEEEcC-------------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEc----
Confidence 456789999999999999 899999999999999999 33 3567778999999999997
Q ss_pred C--CCCEEEEeeCCCcEEEEeccCCCccc---cccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCcc
Q 010784 220 G--SGKILASGGEDATVRLWSLSSSGKRG---QQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSA 293 (501)
Q Consensus 220 ~--~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~ 293 (501)
+ ++++|++|+.||.|++||+.++.... .......+..|...|.+++|+|.. +.+|++++.||.|++||+++++.
T Consensus 67 ~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp CGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred CCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 5 58999999999999999998864211 113467788999999999999832 78999999999999999998865
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EE
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AM 369 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~ 369 (501)
+.......... . .......|...+.+++|+|+ +.++++++.++ +.
T Consensus 147 ~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 147 LRSWTLTSEMK------V-------------------------LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195 (351)
T ss_dssp TTCCEEEEEEE------S-------------------------CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred hcccccccccc------c-------------------------cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence 44322111000 0 00111246788999999997 99999999999 87
Q ss_pred EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784 370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
+|+...++. ..+..+.+|...|++++|+|+ .++++|+.||.|++||+.++....... .+.......
T Consensus 196 ~~~~~~~~~----~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~ 266 (351)
T 3f3f_A 196 YQRGKDGKL----HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-----ESLTNSNMF 266 (351)
T ss_dssp EEECTTSCE----EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred EEccCCCce----eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-----Ccccceecc
Confidence 777766542 235778899999999999999 589999999999999998765443331 111112222
Q ss_pred Eeecccc------------------------EEEEeecCCCceEEEeeccCCccceeecCCCCceeeecccCCC
Q 010784 445 AMAVSGC------------------------RIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 445 ~~s~~g~------------------------~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
..++... .+..-. .+.+.|.-..+.+.+..+++++.|+.+++|++....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 2222222 222211 144567777788888899999999999999998654
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.9e-31 Score=253.34 Aligned_cols=248 Identities=19% Similarity=0.238 Sum_probs=198.7
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-C---ceeeeccCCCCceEEEEeeecCCC-CCCEEEE
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-G---SCQRCFKGHNGPVSTLSDKLLGDG-SGKILAS 227 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-~---~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~s 227 (501)
....++++|. ...++++++.||.|+||+ . + ..+..+.+|.+.|++++|+ + ++++|++
T Consensus 36 ~~~~~~~~~~------------~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~----p~~~~~l~s 99 (402)
T 2aq5_A 36 DSGFCAVNPK------------FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC----PHNDNVIAS 99 (402)
T ss_dssp SSCSEEECSS------------EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC----TTCTTEEEE
T ss_pred CCCcEEECCC------------eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC----CCCCCEEEE
Confidence 3445777772 223455688999999998 2 2 2455678999999999997 6 8999999
Q ss_pred eeCCCcEEEEeccCCCcccc-ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC
Q 010784 228 GGEDATVRLWSLSSSGKRGQ-QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP 306 (501)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 306 (501)
|+.||.|++||+.++..... ...+..+.+|...|.+++|+|.+.++|++++.||.|++||+++++.
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------- 166 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA------------- 166 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-------------
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-------------
Confidence 99999999999988632100 0246778899999999999985447999999999999999987642
Q ss_pred CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCC
Q 010784 307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQ 383 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 383 (501)
+..+ ..|...|.+++|+|++.+|++++.|+ |++||+++++..
T Consensus 167 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---- 211 (402)
T 2aq5_A 167 -------------------------------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV---- 211 (402)
T ss_dssp -------------------------------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE----
T ss_pred -------------------------------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee----
Confidence 2344 56889999999999999999999888 999999987654
Q ss_pred Ccccc-cCcccC-eEEEEecCC-eEEEEe---cCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 384 PMAEL-DGHVGS-VTQLHMDPY-KIVTGG---RDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 384 ~~~~~-~~h~~~-v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
..+ .+|.+. +.+++|+|+ .++++| +.|+.|++||+.+++. +.... ..+...+..++|+|++++|+++
T Consensus 212 --~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 212 --AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp --EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTEEEEE
T ss_pred --eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCEEEEE
Confidence 666 677765 899999999 999998 7999999999998765 33332 2356679999999999999765
Q ss_pred ecCCCceEEEeeccCCc
Q 010784 457 SYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 457 ~~d~~g~i~~w~~~~~~ 473 (501)
+. .||.|++|++..+.
T Consensus 286 g~-~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 286 GK-GDSSIRYFEITSEA 301 (402)
T ss_dssp ET-TCSCEEEEEECSST
T ss_pred Ec-CCCeEEEEEecCCC
Confidence 43 57999999998766
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-31 Score=249.68 Aligned_cols=245 Identities=10% Similarity=0.030 Sum_probs=188.3
Q ss_pred ecCCCCceEEeeCCc---------EEEeecCCeeeEEEEecccccccce--------ecccCCcceeEEEeeccCcCccc
Q 010784 108 SVAKPHDHILLDNND---------IFSTQGSSIQNIKIDNFLSESYYRA--------TLSDHKARITCMRLFPLHETSLF 170 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~---------~~~~~g~~d~~i~vw~~~~~~~~~~--------~~~~h~~~V~~~~~~~~~~~~~~ 170 (501)
.+...+.+++++++. ..+++|+.|+.+++|++.+....+. ....+...+.+++|+|
T Consensus 71 ~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp------- 143 (365)
T 4h5i_A 71 DNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR------- 143 (365)
T ss_dssp TTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-------
T ss_pred CCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-------
Confidence 344557777776542 2344566789999999876422221 1234556689999999
Q ss_pred ccCCCCcCcEEE--EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784 171 RSEPQRTENVLV--TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246 (501)
Q Consensus 171 ~~~~~~~~~~l~--s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 246 (501)
||++++ +++.|++|+||| +++++..+. |.+.|.+++|+ |+|+++++++.+ .+++|+..++..
T Consensus 144 ------Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fs----pdg~~l~s~s~~-~~~~~~~~~~~~-- 209 (365)
T 4h5i_A 144 ------EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFS----TDGKVVAYITGS-SLEVISTVTGSC-- 209 (365)
T ss_dssp ------TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEEC----TTSSEEEEECSS-CEEEEETTTCCE--
T ss_pred ------CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEc----cCCceEEeccce-eEEEEEeccCcc--
Confidence 888876 455799999999 667777765 78899999997 899999999865 566666666553
Q ss_pred cccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE
Q 010784 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA 322 (501)
Q Consensus 247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
........|...|.+++|+| ++..+++++.|+ .+++|++.......
T Consensus 210 --~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~--------------------------- 259 (365)
T 4h5i_A 210 --IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSV--------------------------- 259 (365)
T ss_dssp --EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEE---------------------------
T ss_pred --eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecc---------------------------
Confidence 12334567899999999998 788999998887 57788876543210
Q ss_pred eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-ccCcccCeEEEEe
Q 010784 323 SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LDGHVGSVTQLHM 400 (501)
Q Consensus 323 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 400 (501)
.....+.+|...|++++|+|+|++|++|+.|+ |+|||+++++.+ .+ +.+|...|++++|
T Consensus 260 -------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~------~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 260 -------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS------KIFKQAHSFAITEVTI 320 (365)
T ss_dssp -------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------EEETTSSSSCEEEEEE
T ss_pred -------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE------EEecCcccCCEEEEEE
Confidence 12245667889999999999999999999999 999999987654 55 5789999999999
Q ss_pred cCC-eEEEEecCCCcEEEEeCCC
Q 010784 401 DPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 401 ~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
+|+ ++|++||.|++|+|||+..
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Confidence 999 9999999999999999964
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=257.23 Aligned_cols=289 Identities=11% Similarity=0.070 Sum_probs=221.7
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
..|+..+.+++|+|+| .++.+.+|+.+. .....+ .|.+.|.+++|+| +|.+||+++.
T Consensus 49 ~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~~~~~-~~~~~V~~vawSP-------------dG~~LAs~s~ 105 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NGLLNS-QPVCYPRVCKPSP-------------IDDWMAVLSN 105 (588)
T ss_dssp SSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SCSSTT-SCSCCEEEEEECS-------------SSSCEEEEET
T ss_pred cCCCccEEEEEECCCC-------CcceEEEEeCCC--ceEeec-CCCCcEEEEEECC-------------CCCEEEEEeC
Confidence 4688889999999999 577777777542 222233 5688999999999 8999999999
Q ss_pred CCceEEecCCceeeeccCCCC-----ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc-cccceeec----cC
Q 010784 187 DHSIRLWWKGSCQRCFKGHNG-----PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG-QQALKATL----YG 256 (501)
Q Consensus 187 dg~i~vwd~~~~~~~~~~h~~-----~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~ 256 (501)
||+|++||...++..+. |.. .|.+++|| |+|++|++|+.||+|++||+.++.... +...+.++ .+
T Consensus 106 dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafS----PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g 180 (588)
T 2j04_A 106 NGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWN----PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG 180 (588)
T ss_dssp TSCEEEEETTEEEEECC-CSSCSTTTCEEEEEEC----SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT
T ss_pred CCcEEEEeCCceeeecc-CCCccccccEEEEEEc----CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc
Confidence 99999999555777777 665 49999998 899999999999999999998864100 00123454 67
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|...|.+++|+| ++ +++++.|+.|++||+.++.......... ..+...+.++.+++..+..++++.|++||+.+++
T Consensus 181 h~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~ 256 (588)
T 2j04_A 181 SKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYS 256 (588)
T ss_dssp CCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEETTEEEEECSSEEEEEETTTTE
T ss_pred ccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEECCEEEEEeCCeEEEEECCCCe
Confidence 889999999998 55 8889999999999998876321000000 0234567777777555566666799999999988
Q ss_pred eEeeeccCCCcEEEEEE--cCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784 337 KVMTPAICKPILHSFSI--MPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~--~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
......+|...+..++| +|++..++++++++.++|... .++++|+ .++++ .|+
T Consensus 257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d----------------------~~~~spd~~l~a~--~d~ 312 (588)
T 2j04_A 257 ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED----------------------ELHVTADNIIAPY--LEK 312 (588)
T ss_dssp EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS----------------------SEEEECCCSSHHH--HHH
T ss_pred EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec----------------------cEEECCCceEEEE--cCC
Confidence 85444479999999999 999999999997766999865 1558888 66655 399
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
++++|+...+ .+..+ .+ ...|.+++|||||+.+|+++.
T Consensus 313 ~v~lW~~~g~-~l~~~-----~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWN-EFNNY-----ET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTT-SSSSS-----CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCC-ceeee-----cc-ceEEEEEEECCCCCEEEEEEe
Confidence 9999997544 34455 22 667999999999999999874
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=2e-30 Score=242.62 Aligned_cols=248 Identities=10% Similarity=0.109 Sum_probs=185.8
Q ss_pred CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL 274 (501)
Q Consensus 195 ~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 274 (501)
+...+..+..|...|++++|+ ++|++|++|+.+| +++|++.+... ..... ...+..+.+.+....++
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs----~dg~~la~g~~~~-~~iw~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFN----QDQSCLILSTLKS-FEIYNVHPVAH------IMSQE--MRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------CCCCCEEEEC----TTSSEEEEECSSE-EEEEEETTEEE------EEEEE--CSCCCEEEECTTSSEEE
T ss_pred ccCCccccccCCCceEEEEEC----CCCCEEEEEcCCE-EEEEecCCcce------eeeee--cCCeEEEEEcCCCCEEE
Confidence 445566678899999999997 8999999998775 78999887542 22222 22477788887555555
Q ss_pred EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC-ceEeeeccCCCcEEEEEE
Q 010784 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM-QKVMTPAICKPILHSFSI 353 (501)
Q Consensus 275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~v~~ 353 (501)
++++.|+.|++||+.+++.+... .....+.++.++++..+++.++.+++||+.++ +.+..+.. ....+++
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred EEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 77888999999999998654432 34567888899999999999999999999998 66666554 4445666
Q ss_pred cCCCcEEEE--EcCCc-EEEEecCCCCCCC---------CCCC-cccccCcccCeEEEEecCC-eEEEEecCCCc-EEEE
Q 010784 354 MPSKSLICT--GGIGK-AMTWDIRRSQDAV---------KPQP-MAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIW 418 (501)
Q Consensus 354 ~~~~~~l~~--~~~d~-i~iwd~~~~~~~~---------~~~~-~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iw 418 (501)
++ .+++. |+.++ |++||+.+++... ...+ +..+.+|.+.|++++|+|+ +++++|+.||+ |++|
T Consensus 146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 77 45555 56777 9999999764110 0112 5788999999999999999 99999999998 9999
Q ss_pred eCCCcccccccccCCCCC-CCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 419 ETDTGMLANSLLCNYPEE-ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 419 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
|+.+++++.++. .+ |...|.+++|+|+|++|++++ .|+.|++||+..+
T Consensus 224 d~~~~~~~~~~~----~g~h~~~v~~~~~s~~~~~l~s~s--~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 224 KTEDGVLVREFR----RGLDRADVVDMKWSTDGSKLAVVS--DKWTLHVFEIFND 272 (355)
T ss_dssp ETTTCCEEEEEE----CTTCCSCEEEEEECTTSCEEEEEE--TTCEEEEEESSCC
T ss_pred ECCCCcEEEEEE----cCCCCCcEEEEEECCCCCEEEEEE--CCCEEEEEEccCC
Confidence 999999999984 13 778999999999999999999 6699999998643
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4.4e-30 Score=228.96 Aligned_cols=268 Identities=10% Similarity=0.073 Sum_probs=186.4
Q ss_pred CceEEeeCCcE---EEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCc------------CcccccCCC
Q 010784 113 HDHILLDNNDI---FSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHE------------TSLFRSEPQ 175 (501)
Q Consensus 113 i~~~~~~~~~~---~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~------------~~~~~~~~~ 175 (501)
+.++-|...+. .+++++ ...|++|+..++. +.++++++|..+|..+.+.|+.. ..+.++.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55555554332 455554 5889999999842 78899999999999999998432 134444444
Q ss_pred Cc----CcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCcccccc
Q 010784 176 RT----ENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 176 ~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~ 249 (501)
|+ ++.+++++.+ +++| .+ ++++++.+++ .|+.|++|++.....
T Consensus 121 pd~~~~~~~l~s~g~~--~~v~-----------------~l-------~~g~lv~ss~~g~d~~V~~~~~s~dG~----- 169 (356)
T 2w18_A 121 SDDESEKQVLLKSGNI--KAVL-----------------GL-------TKRRLVSSSGTLSDQQVEVMTFAEDGG----- 169 (356)
T ss_dssp -----CCEEEEEEEEE--EEEE-----------------EE-------TTTEEEEEESSSTTCEEEEEEECTTSC-----
T ss_pred CCccccccEEEeCCCe--EEEE-----------------ec-------CCCcEEEecccCCCCcEEEEEECCCCc-----
Confidence 55 5555554422 3333 22 3566666643 699999999965333
Q ss_pred ceeeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 250 LKATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 250 ~~~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
.+..+.+|...++.++|++. ++..|++++.|++|++||+.+++.+.
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~-------------------------------- 217 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK-------------------------------- 217 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE--------------------------------
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE--------------------------------
Confidence 56777789999988888873 56899999999999999999885432
Q ss_pred EEEEcCCCceEeeeccC---CCcEEEEEEcCCCcEE------------EEEcCCc-EEEEecCCCCCCCCCCCcccc---
Q 010784 328 VTIDLRTMQKVMTPAIC---KPILHSFSIMPSKSLI------------CTGGIGK-AMTWDIRRSQDAVKPQPMAEL--- 388 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l------------~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--- 388 (501)
++.+| ...+.+++|+|+|.++ ++|+.|+ |++||..+++.+ ..+
T Consensus 218 ------------tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l------~v~~~~ 279 (356)
T 2w18_A 218 ------------KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV------GVMLYC 279 (356)
T ss_dssp ------------EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE------EEEEEC
T ss_pred ------------EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE------EEEEee
Confidence 33332 2356777889988876 5677888 999999987653 222
Q ss_pred --cCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcce-eeeEeeccccEEEEeecCCCceEE
Q 010784 389 --DGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIST-GCSAMAVSGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 389 --~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~s~~~d~~g~i~ 465 (501)
.+|...+.+..++ ..++++|+.|++|+|||+.+++++.++ .+|...+ ..++|+|||++|++|+ .|++|+
T Consensus 280 ~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL-----~gH~~~vvs~vafSPDG~~LaSGS--~D~TIk 351 (356)
T 2w18_A 280 LPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQ--KDGNIF 351 (356)
T ss_dssp CCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEE-----CCC--CCCCEEEECSSSSEEEEEC--TTSCEE
T ss_pred ccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEe-----cCCCCCeEEEEEECCCCCEEEEEE--CCCcEE
Confidence 3666555444444 357888899999999999999999999 4555544 4589999999999999 669999
Q ss_pred Eeecc
Q 010784 466 FRDFS 470 (501)
Q Consensus 466 ~w~~~ 470 (501)
+||+.
T Consensus 352 lWd~~ 356 (356)
T 2w18_A 352 VYHYS 356 (356)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 99963
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=1.4e-29 Score=244.30 Aligned_cols=278 Identities=5% Similarity=-0.048 Sum_probs=222.0
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce-----ecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
.....+.+++++|++.++++++.++.|++||..++ +... .+.+|.+.|.+++|++ ++.+++
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~ 185 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPE-------------HNELWV 185 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGG-------------GTEEEE
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcC-------------CCEEEE
Confidence 34455779999999999999999999999999985 4445 5668999999999988 789999
Q ss_pred EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
+++.|+.|++|| .++.+..+..|...+.+++|+ ++++.++ +++.|+.|++||+.++. ....+.. ..
T Consensus 186 s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~-~~ 254 (433)
T 3bws_A 186 SQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD----PIRDLVYCSNWISEDISVIDRKTKL------EIRKTDK-IG 254 (433)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE----TTTTEEEEEETTTTEEEEEETTTTE------EEEECCC-CS
T ss_pred EECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc----CCCCEEEEEecCCCcEEEEECCCCc------EEEEecC-CC
Confidence 999999999999 667788888899999999997 7888775 55589999999998765 3555554 45
Q ss_pred ceeEEEEeecCCeEEEEEe--------CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 260 PIKLMSVAGHKSFLLVTIS--------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s--------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
.+.+++|+| +++.+++++ .|+.|++||+.+++...
T Consensus 255 ~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------------------------------ 297 (433)
T 3bws_A 255 LPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------------------------------ 297 (433)
T ss_dssp EEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE------------------------------------
T ss_pred CceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEe------------------------------------
Confidence 589999998 666777777 48899999988764311
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~ 408 (501)
.+ .|...+.+++|+|+++. +++++.++ |++||+.+++.. ..+. +...+.+++|+|+ +++++
T Consensus 298 --------~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~------~~~~-~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 298 --------TI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ------KSIP-VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp --------EE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE------EEEE-CSSSEEEEEECTTSSEEEE
T ss_pred --------ec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE------EEec-CCCCCCeEEEcCCCCEEEE
Confidence 11 23456788999999964 56667777 999999976543 4444 5678999999999 65555
Q ss_pred ecC---------------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 409 GRD---------------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 409 gs~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++. ||.|++||+.+++.+..+.. ...+..++|+|+|++|++++. .++.|++|+++
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~-~d~~i~v~~~~ 431 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------GNQPTGLDVSPDNRYLVISDF-LDHQIRVYRRD 431 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSCEEEEEET-TTTEEEEEEET
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecC------CCCCceEEEcCCCCEEEEEEC-CCCeEEEEEec
Confidence 444 57999999999998888842 346899999999999998874 37999999986
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-30 Score=237.50 Aligned_cols=234 Identities=9% Similarity=0.031 Sum_probs=177.4
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc---cccccce
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK---RGQQALK 251 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~ 251 (501)
++++|++|+.||+|++|| .++.+..+. ...|.++.|+ +. +++|+.|++|++|+...... ......+
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~----~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEH----PA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCC----CS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeC----Cc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 789999999999999999 666666665 5677888886 44 99999999999998763210 0000112
Q ss_pred ee-ccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 252 AT-LYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 252 ~~-~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
.. ..+|..+|.+++++|. ++.++++++.||.|++||+++++..
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----------------------------------- 162 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY----------------------------------- 162 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-----------------------------------
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-----------------------------------
Confidence 22 3367789999999972 5679999999999999999887531
Q ss_pred EEcCCCceEeee-ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC-eE
Q 010784 330 IDLRTMQKVMTP-AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY-KI 405 (501)
Q Consensus 330 ~d~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~ 405 (501)
... ..+...+.+++|+|++.+|++|+.|+ |++||+++++.. ...+.. |.+.|++++|+|+ .+
T Consensus 163 ---------~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 163 ---------IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-----SSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp ---------EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-----CEECCCCTTSCEEEEEECTTSSE
T ss_pred ---------EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-----ccEEeccCCCCEEEEEEeCCCCE
Confidence 111 22456799999999999999999988 999999987542 256677 9999999999999 88
Q ss_pred EEEecCCCcEEEEeCCCcccccccccCCCCCCCccee--eeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG--CSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+++++ |+.|++||+++++.+..+.... .|...+. +++|+|+|++|++++. +++.|++|++...
T Consensus 229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSN-ESNSLTIYKFDKK 293 (343)
T ss_dssp EEEEE-SSBEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEET-TTTEEEEEEECTT
T ss_pred EEEEe-CCeEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecC-CCCcEEEEEEccc
Confidence 88887 5599999999988877664211 1233343 6999999999999884 2699999988543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=233.08 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=209.9
Q ss_pred cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCce
Q 010784 122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~ 198 (501)
+.++++++.++.|++||+.++ +.+..+.+|.. +.+++|+| +++++ ++++.|++|++|| +++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~s~-------------dg~~l~~~~~~d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN-KVTATIPVGSN-PMGAVISP-------------DGTKVYVANAHSNDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT-EEEEEEECSSS-EEEEEECT-------------TSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CEEEEEcCCCCEEEEEECCCC-eEEEEeecCCC-cceEEECC-------------CCCEEEEECCCCCeEEEEECCCCeE
Confidence 467889999999999999985 77778877754 89999999 77765 7788999999999 6777
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
+..+..+. .+.+++|+ +++++|+ +++.++.|++||+.+++. ...+.. ...+.+++|+|++..+++++
T Consensus 67 ~~~~~~~~-~v~~~~~s----pdg~~l~~~~~~~~~v~v~d~~~~~~------~~~~~~-~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 67 IATVPAGS-SPQGVAVS----PDGKQVYVTNMASSTLSVIDTTSNTV------AGTVKT-GKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEEEECSS-SEEEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE------EEEEEC-SSSEEEEEECTTSSEEEEEE
T ss_pred EEEEECCC-CccceEEC----CCCCEEEEEECCCCEEEEEECCCCeE------EEEEeC-CCCcceEEECCCCCEEEEEe
Confidence 77776555 89999997 7888775 555679999999998763 445543 45689999998444444788
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSI 353 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~ 353 (501)
+.++.|++||+.+++..... .....+..+.++++. ++++.. +.+.+||+++++.+..+. +...+.+++|
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~------~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~ 207 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTV------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAV 207 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEE------ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEE
Confidence 88999999999988654332 223445566666554 444433 479999999998877766 4668899999
Q ss_pred cCCCcEEEEEc---CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccccc
Q 010784 354 MPSKSLICTGG---IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGMLAN 427 (501)
Q Consensus 354 ~~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~~~ 427 (501)
+|+++++++++ .++ |++||+.+++.. ..+..|. .+.+++|+|+ + ++++++.|+.|++||+.+++.+.
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~------~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT------ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEE------EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEE------EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 99999888887 466 999999986543 5666554 5789999999 4 55787899999999999999888
Q ss_pred ccccC
Q 010784 428 SLLCN 432 (501)
Q Consensus 428 ~~~~~ 432 (501)
.+..+
T Consensus 281 ~~~~~ 285 (391)
T 1l0q_A 281 TMAVG 285 (391)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 87544
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9.6e-30 Score=241.51 Aligned_cols=268 Identities=7% Similarity=0.007 Sum_probs=181.6
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.....+++++.++|+|+.|++|++||..++. ..+..+.||.+.|++++|+|. .......++++|+||+.|+
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~-----~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADV-----YSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEE-----ECTTCSEEEEEEEEEETTS
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccc-----cccccCCCCCEEEEEECCC
Confidence 4455666788999999999999999988752 234568999999999999972 1111223789999999999
Q ss_pred ceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCcccc------------------
Q 010784 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQ------------------ 247 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~------------------ 247 (501)
+|+||| .+..+..+..|..+|.+++|+ |++ .+|++|+.||+|++||+.++.....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~----p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFR----PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEE----TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEEC----CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 999999 667777778899999999998 555 5899999999999999987653110
Q ss_pred -ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 248 -QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 248 -~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
........+|...|.++.|.+.++..+++++.|+.+++||+..++...... ............+
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-----~~~~~~~~~~~~~---------- 307 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-----DSTMKLGPKNLLP---------- 307 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSC----------
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-----eecCccccEEEcc----------
Confidence 001112356888999999986689999999999999999998875432211 0111111111111
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
.......+...+..+.+.+ ++.++++|+.|+ |++||+.+++.. ..+.+|..+|++++|+|+
T Consensus 308 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~------~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 308 ----------NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN------SIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp ----------SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC------EEEEECSSCEEEEEECTTS
T ss_pred ----------ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE------EEecCCCCcEEEEEEcCCC
Confidence 1122222223333333333 456777888888 999999987654 667788899999999999
Q ss_pred eEEEEecCCCcEEEEeCC
Q 010784 404 KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~ 421 (501)
++||+++.+| +.+|.+.
T Consensus 372 ~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 372 SHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SEEEEEESSE-EEEEEEG
T ss_pred CEEEEEeCCC-eEEEEEe
Confidence 9999986655 6666653
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.3e-28 Score=235.78 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=214.5
Q ss_pred cCCeeeEEEEeccc--c-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceee--
Q 010784 128 GSSIQNIKIDNFLS--E-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQR-- 200 (501)
Q Consensus 128 g~~d~~i~vw~~~~--~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~-- 200 (501)
++.++.+.+|.+.. + .+.+..+..+ ..+.+++|+| ++.++++++.++.|++|| +++.+.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~-------------~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 160 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFID-------------NTRLAIPLLEDEGMDVLDINSGQTVRLS 160 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESS-------------SSEEEEEBTTSSSEEEEETTTCCEEEEC
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeC-------------CCeEEEEeCCCCeEEEEECCCCeEeeec
Confidence 44455344554432 2 1344445444 3466889988 788999999999999999 566655
Q ss_pred ---eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784 201 ---CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 201 ---~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
.+.+|...|.+++|+ +++.++++++.|+.|++||+.++. ....+..|...+.+++|+|++..+++++
T Consensus 161 ~~~~~~~~~~~v~~~~~~----~~~~~~~s~~~d~~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 161 PPEKYKKKLGFVETISIP----EHNELWVSQMQANAVHVFDLKTLA------YKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp CCHHHHTTCCEEEEEEEG----GGTEEEEEEGGGTEEEEEETTTCC------EEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CcccccccCCceeEEEEc----CCCEEEEEECCCCEEEEEECCCce------EEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 456899999999996 788999999999999999998876 4677778899999999998544444666
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
+.|+.|++||+++++.+ ..+. +...+.+++|+|++
T Consensus 231 ~~~~~i~~~d~~~~~~~--------------------------------------------~~~~-~~~~~~~~~~~~~g 265 (433)
T 3bws_A 231 WISEDISVIDRKTKLEI--------------------------------------------RKTD-KIGLPRGLLLSKDG 265 (433)
T ss_dssp TTTTEEEEEETTTTEEE--------------------------------------------EECC-CCSEEEEEEECTTS
T ss_pred cCCCcEEEEECCCCcEE--------------------------------------------EEec-CCCCceEEEEcCCC
Confidence 68999999999876432 1222 23458899999999
Q ss_pred cEEEEEc--------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccc
Q 010784 358 SLICTGG--------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLA 426 (501)
Q Consensus 358 ~~l~~~~--------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~ 426 (501)
+++++++ .++ |++||+.+++.. .. ..|...+.+++|+|+ .++++++.|+.|++||+.+++.+
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~------~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLI------DT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEE------EE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEE------ee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 9988887 467 999999986543 33 346678999999998 57788789999999999999888
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEeecCC-------------CceEEEeeccC--------------------Cc
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-------------PGLLQFRDFSN--------------------AT 473 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-------------~g~i~~w~~~~--------------------~~ 473 (501)
..+. +...+..++|+|+|++|++++.+. ||.|++||... ++
T Consensus 339 ~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 412 (433)
T 3bws_A 339 KSIP------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN 412 (433)
T ss_dssp EEEE------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred EEec------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence 7773 356788999999999999887532 57999999643 33
Q ss_pred cceee-cCCCCceeeecccC
Q 010784 474 CPVLK-HEVQNDSKFWGPQC 492 (501)
Q Consensus 474 ~~~~s-~~~d~~~~~w~~~~ 492 (501)
..+++ ++.|+.+++|+++.
T Consensus 413 ~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEecC
Confidence 34444 44589999998763
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=238.24 Aligned_cols=243 Identities=10% Similarity=0.040 Sum_probs=195.5
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc---eeeecc-------------------------
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS---CQRCFK------------------------- 203 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~---~~~~~~------------------------- 203 (501)
.++.+++|++ +|++|+++ .++.|++|| +++ .+..+.
T Consensus 5 ~p~~~v~~s~-------------dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (450)
T 2vdu_B 5 HPLQNLLTSR-------------DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENE 70 (450)
T ss_dssp CCCCEEEECS-------------SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------
T ss_pred ccEEEEEecC-------------CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccc
Confidence 5788899998 78866655 588999999 666 444443
Q ss_pred -----------------------------CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEecc--CCCccccccce
Q 010784 204 -----------------------------GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLS--SSGKRGQQALK 251 (501)
Q Consensus 204 -----------------------------~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~--~~~~~~~~~~~ 251 (501)
.|.+.|.+++|+ +++++| ++|+.||.|++||+. ++. ..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~~~~~dg~v~iwd~~~~~~~------~~ 140 (450)
T 2vdu_B 71 NENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT----SDESRLIACADSDKSLLVFDVDKTSKN------VL 140 (450)
T ss_dssp -----------------------------CCCCCEEEEEEC----TTSSEEEEEEGGGTEEEEEEECSSSSS------CE
T ss_pred ccccccccCcCccccccCccccCCCCCCCccCCceEEEEEc----CCCCEEEEEECCCCeEEEEECcCCCCc------ee
Confidence 234479999997 889986 899999999999998 655 35
Q ss_pred eecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 252 ATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 252 ~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
..+. .|...|.+++|+| ++.+|++|+.+|.|++|++.+++....
T Consensus 141 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------------- 186 (450)
T 2vdu_B 141 KLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF--------------------------------- 186 (450)
T ss_dssp EEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------------------
T ss_pred eeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------------------
Confidence 5554 5778999999998 788999999999999999987643210
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-ccCcccCeEEEEecCC-
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~- 403 (501)
....+.+|...|.+++|+|+ +++|++|+.|+ |++||+++++.. .. +.+|...|++++|+ +
T Consensus 187 -------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 187 -------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------DKWLFGHKHFVSSICCG-KD 252 (450)
T ss_dssp -------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------EEECCCCSSCEEEEEEC-ST
T ss_pred -------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------eeeecCCCCceEEEEEC-CC
Confidence 11245568899999999999 99999999988 999999987643 55 56899999999999 8
Q ss_pred eEEEEecCCCcEEEEeCCCcccccccccCC--------------------CCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784 404 KIVTGGRDDLRINIWETDTGMLANSLLCNY--------------------PEEADISTGCSAMAVSGCRIVTASYGEPGL 463 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~ 463 (501)
.++++|+.|+.|++||+.+++++..+..+. .......+..++|+|++++|++++. .++.
T Consensus 253 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~d~~ 331 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-ATKC 331 (450)
T ss_dssp TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-TCSE
T ss_pred CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-CCCe
Confidence 888899999999999999999887774221 0023457899999999999999984 4699
Q ss_pred EEEeec
Q 010784 464 LQFRDF 469 (501)
Q Consensus 464 i~~w~~ 469 (501)
|++|++
T Consensus 332 i~iw~~ 337 (450)
T 2vdu_B 332 IIILEM 337 (450)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999999
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.8e-27 Score=232.56 Aligned_cols=345 Identities=12% Similarity=0.042 Sum_probs=253.7
Q ss_pred EEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC
Q 010784 116 ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK 195 (501)
Q Consensus 116 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~ 195 (501)
.++++++.++++++.++.|.+||..++ +++.++..+.. +..++|+| +|++|++++.|++|++||.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~sp-------------dg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSA-------------SGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECT-------------TSCEEEEEETTSEEEEEET
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECC-------------CCCEEEEECCCCeEEEEEC
Confidence 358999999999999999999999985 77788874333 88999999 8999999999999999994
Q ss_pred ----CceeeeccCCCCceEEEEeeecCCC----CCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC----------
Q 010784 196 ----GSCQRCFKGHNGPVSTLSDKLLGDG----SGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG---------- 256 (501)
Q Consensus 196 ----~~~~~~~~~h~~~v~~l~~s~~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~---------- 256 (501)
++.+..+. +...+..++|+ + +|+++++++. +++|.+||..+.+. +..+..
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~s----p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~------~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESS----KFKGYEDRYTIAGAYWPPQFAIMDGETLEP------KQIVSTRGMTVDTQTY 276 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEEC----CSTTCTTTEEEEEEEESSEEEEEETTTCCE------EEEEECCEECSSSCCE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeC----CCcCCCCCEEEEEEccCCeEEEEecccccc------ceeecccCcccCcccc
Confidence 45566666 45567999997 7 9999999884 89999999988763 444432
Q ss_pred C-CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe--CCcEEEEE
Q 010784 257 H-EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS--GSSVVTID 331 (501)
Q Consensus 257 ~-~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~i~~~d 331 (501)
| ...+..+.+++.+..++++...++.|.+||+.+.+.+.. ........+..+.++++.. +++. ++.|.+||
T Consensus 277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~----~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE----EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee----EEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 2 236889999987778888889999999999988754321 1122344555666666543 3443 24899999
Q ss_pred cCCCceEeeecc----CCCcEEEEEEcCC-CcEEEEEc-CCc-EEEEecCCCCC-CCCCCCcccccCcccCeEEEEecCC
Q 010784 332 LRTMQKVMTPAI----CKPILHSFSIMPS-KSLICTGG-IGK-AMTWDIRRSQD-AVKPQPMAELDGHVGSVTQLHMDPY 403 (501)
Q Consensus 332 ~~~~~~~~~~~~----~~~~v~~v~~~~~-~~~l~~~~-~d~-i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~ 403 (501)
+.+++.+..+.. |.+....+ ++|+ +.+++++. .++ |.+||+.+... ....+.++++.+|.+.+..++++|+
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd 431 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK 431 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence 999998887764 54444343 4677 77777775 456 99999987211 0113456889999888999999999
Q ss_pred -eEEEEec-------CCCcEEEEeCCCcccc-cccccCC---CCCCCcceeeeEeeccccEEEEeec---CCCceEEEee
Q 010784 404 -KIVTGGR-------DDLRINIWETDTGMLA-NSLLCNY---PEEADISTGCSAMAVSGCRIVTASY---GEPGLLQFRD 468 (501)
Q Consensus 404 -~~l~~gs-------~dg~i~iwd~~~~~~~-~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~---d~~g~i~~w~ 468 (501)
+.|.+++ .+++|.+||+.+++.. ..+.... ...+...+..+.|+|+|+.++++.. +.++.|.|||
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 7777765 2779999999998877 3332110 0234678899999999999987643 2579999999
Q ss_pred ccCCcccee-----ecCCCCceeeeccc
Q 010784 469 FSNATCPVL-----KHEVQNDSKFWGPQ 491 (501)
Q Consensus 469 ~~~~~~~~~-----s~~~d~~~~~w~~~ 491 (501)
..+++.... ...-+|...+||-+
T Consensus 512 ~~t~~~~~~i~~~~~~~p~g~~~~~~~~ 539 (543)
T 1nir_A 512 DKTLKLKAVVKDPRLITPTGKFNVYNTQ 539 (543)
T ss_dssp TTTTEEEEEECCTTCCSEEEEEEHHHHH
T ss_pred CCCceEEEeecCCCccCCCeeeeccccc
Confidence 988765322 12335666666543
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.1e-26 Score=220.96 Aligned_cols=261 Identities=11% Similarity=0.083 Sum_probs=199.9
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeec
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+.++++++.|+.|++|| +++.+..+..|. .+.+++|+ ++++++ ++++.|+.|++||+.+++ ....+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~d~~i~v~d~~~~~------~~~~~ 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS----PDGTKVYVANAHSNDVSIIDTATNN------VIATV 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC----TTSSEEEEEEGGGTEEEEEETTTTE------EEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC----CCCCEEEEECCCCCeEEEEECCCCe------EEEEE
Confidence 35788999999999999 677778887665 48999997 788876 677799999999998876 35555
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeC--CcEEEE
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG--SSVVTI 330 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~~~ 330 (501)
..+. .+.+++|+|++..++++++.++.|++||+.+++.+... .....+..+.++++. ++++.. +.+.+|
T Consensus 71 ~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 5444 89999999844444466667899999999988654332 234456667776653 434443 489999
Q ss_pred EcCCCceEeeeccCCCcEEEEEEcCCCcEE-EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784 331 DLRTMQKVMTPAICKPILHSFSIMPSKSLI-CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT 407 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~ 407 (501)
|+.+++.+..+..+ ..+.+++|+|+++++ ++++.++ |++||+++++.. ..+. +...+.+++|+|+ +.++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~------~~~~-~~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI------DTVK-VEAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------EEEE-CSSEEEEEEECTTSSEEE
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE------EEEe-cCCCccceEECCCCCEEE
Confidence 99999988887765 456999999999877 5667777 999999986543 4443 4567899999999 5555
Q ss_pred Eec---CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE-EeecCCCceEEEeeccCC
Q 010784 408 GGR---DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV-TASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 408 ~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-s~~~d~~g~i~~w~~~~~ 472 (501)
+++ .++.|++||+.+++.+..+.. + ..+.+++|+|+|++|+ +++ .++.|++||+..+
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITARIPV-----G-PDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATN 276 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEEC-----C-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTT
T ss_pred EEecCcCCCcEEEEECCCCeEEEEEec-----C-CCccEEEEccCCCEEEEEcC--CCCEEEEEECCCC
Confidence 555 689999999999988888742 2 3478899999999885 555 6799999997643
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.1e-26 Score=207.18 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred cCcEEEEee--CCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 177 TENVLVTSS--CDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 177 ~~~~l~s~~--~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
+++++.+++ .|+.|++|+ .++.+..+.+|...++.++|++.+ .++.+|++|+.|++|++||+.+++ ++
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~-g~~~~LaSgS~D~TIkIWDl~TGk------~l 216 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ-GMQEALLGTTIMNNIVIWNLKTGQ------LL 216 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE-TSTTEEEEEETTSEEEEEETTTCC------EE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC-CCCceEEEecCCCcEEEEECCCCc------EE
Confidence 344444422 466666665 355556667899999999998322 377999999999999999999987 47
Q ss_pred eeccCCC---CceeEEEEeecCCeEEEE------------EeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784 252 ATLYGHE---KPIKLMSVAGHKSFLLVT------------ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE 316 (501)
Q Consensus 252 ~~~~~~~---~~v~~l~~~~~~~~~l~s------------~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (501)
.++.+|. ..+.+++|+| ++.++++ |+.|++|++||..+++
T Consensus 217 ~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk------------------------ 271 (356)
T 2w18_A 217 KKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL------------------------ 271 (356)
T ss_dssp EEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTE------------------------
T ss_pred EEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE------------------------
Confidence 7777654 3677789998 6777644 5556666666665553
Q ss_pred CeEEEEeCCcEEEEEcCCCceEeee-----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784 317 SMLYIASGSSVVTIDLRTMQKVMTP-----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
.+..+ .+|...+.+..++ +.++++|+.|+ |+|||+.+++.+ .++.+
T Consensus 272 --------------------~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l------~tL~g 323 (356)
T 2w18_A 272 --------------------SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT------ALLPP 323 (356)
T ss_dssp --------------------EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE------EEECC
T ss_pred --------------------EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE------EEecC
Confidence 33222 2455555544443 88999999888 999999997765 88999
Q ss_pred cccCeE-EEEecCC-eEEEEecCCCcEEEEeC
Q 010784 391 HVGSVT-QLHMDPY-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 391 h~~~v~-~l~~~~~-~~l~~gs~dg~i~iwd~ 420 (501)
|...+. +++|+|+ ++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 987655 5899999 99999999999999995
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=7.4e-26 Score=215.96 Aligned_cols=295 Identities=10% Similarity=-0.003 Sum_probs=211.9
Q ss_pred CCceEEeeCCcE-EEeecCC----ee----eEEEEec--ccccccc--eecccCCcceeEEEeeccCcC-cccccCCCCc
Q 010784 112 PHDHILLDNNDI-FSTQGSS----IQ----NIKIDNF--LSESYYR--ATLSDHKARITCMRLFPLHET-SLFRSEPQRT 177 (501)
Q Consensus 112 ~i~~~~~~~~~~-~~~~g~~----d~----~i~vw~~--~~~~~~~--~~~~~h~~~V~~~~~~~~~~~-~~~~~~~~~~ 177 (501)
.++...|.+.|. ++++|+. +| .+++||+ .++ +.+ ..+.+|...+..+++++.... ........+.
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 466777776664 5556652 45 8999999 775 444 568899999988887641000 0000000012
Q ss_pred CcEEEEeeCC------CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC---cEEEEeccCCCcccc
Q 010784 178 ENVLVTSSCD------HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA---TVRLWSLSSSGKRGQ 247 (501)
Q Consensus 178 ~~~l~s~~~d------g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~ 247 (501)
+..++.++.+ +.|++|| .+.....+..|...|.+++|+ |+|+.|++++.++ .|++||+.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~S----pdg~~la~~s~~~~~~~i~~~d~~tg~~--- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWS----PDGSKLAYVTFESGRSALVIQTLANGAV--- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEc----CCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence 5667666654 7999999 667778888899999999997 8999999999875 999999998753
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEE-EEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLV-TISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
..+..|...+.+++|+| +++.|+ +++.++. |++||+.+++.
T Consensus 216 ----~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~------------------------------- 259 (415)
T 2hqs_A 216 ----RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI------------------------------- 259 (415)
T ss_dssp ----EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-------------------------------
T ss_pred ----EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-------------------------------
Confidence 45667888999999998 566555 7766654 88888877632
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM 400 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 400 (501)
..+..|...+.+++|+|+|++|+.++. ++ |++||+.+++. ..+..+...+.+++|
T Consensus 260 --------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~ 318 (415)
T 2hqs_A 260 --------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRITWEGSQNQDADV 318 (415)
T ss_dssp --------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECCCSSSEEEEEEE
T ss_pred --------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------EEEecCCCcccCeEE
Confidence 233456778999999999998888774 33 77778887642 344556678899999
Q ss_pred cCC-eEEEEecCC---CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCCcc
Q 010784 401 DPY-KIVTGGRDD---LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNATC 474 (501)
Q Consensus 401 ~~~-~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~~~ 474 (501)
+|+ ++|+.++.+ +.|++||+.+++.. .+. .+. .+..++|+|||++|++++.+ ++ .|++||+.....
T Consensus 319 spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-----~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 319 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-----STF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFK 390 (415)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-----CSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCCE
T ss_pred CCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-----CCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEECCCCcE
Confidence 999 666655543 58999999988764 342 222 78899999999999998853 22 799999875554
Q ss_pred ceeec
Q 010784 475 PVLKH 479 (501)
Q Consensus 475 ~~~s~ 479 (501)
...++
T Consensus 391 ~~l~~ 395 (415)
T 2hqs_A 391 ARLPA 395 (415)
T ss_dssp EECCC
T ss_pred EEeeC
Confidence 44433
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.2e-24 Score=224.30 Aligned_cols=318 Identities=12% Similarity=0.022 Sum_probs=226.8
Q ss_pred CCCCceEEeeCCcEEEeecCC-ee-----eEEEEecccccccceecccCC------------------------cceeEE
Q 010784 110 AKPHDHILLDNNDIFSTQGSS-IQ-----NIKIDNFLSESYYRATLSDHK------------------------ARITCM 159 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~-d~-----~i~vw~~~~~~~~~~~~~~h~------------------------~~V~~~ 159 (501)
...+.+++|+|||.++++++. ++ .|.+||+.++ +....+..|. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 345899999999999999887 77 9999999885 5545554443 237888
Q ss_pred EeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784 160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR 235 (501)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~ 235 (501)
+|+| ||++|++++. +.|++|| .+. ....+..|...+.+++|+ |+|++|+.++ ++.|+
T Consensus 115 ~~Sp-------------Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S----PDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSP-------------DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS----PKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECT-------------TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC----TTSSEEEEEE-TTEEE
T ss_pred EECC-------------CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC----CCCCEEEEEe-CCcEE
Confidence 8888 8999999886 9999999 444 566777888899999997 8999999887 46999
Q ss_pred EEeccCCCccccccceeeccCCCCc----------------eeEEEEeecCCeEEEEEeCCC------------------
Q 010784 236 LWSLSSSGKRGQQALKATLYGHEKP----------------IKLMSVAGHKSFLLVTISKDS------------------ 281 (501)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~~~~~~----------------v~~l~~~~~~~~~l~s~s~dg------------------ 281 (501)
+||+.++.. ......+... +..+.|+| +++.|++++.|+
T Consensus 176 ~~d~~~g~~------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 176 VIDLASGRQ------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp EEETTTTEE------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred EEecCCCCE------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 999988652 2323333322 47789998 777888887665
Q ss_pred ---------------eEEEEECCC-CccccceecccceecCCCceeeecCCCe--EEEEeC------CcEEEEEcCCCce
Q 010784 282 ---------------KVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG------SSVVTIDLRTMQK 337 (501)
Q Consensus 282 ---------------~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~i~~~d~~~~~~ 337 (501)
.|.+||+.+ ++....... ......+..+.+ +++ ++++.. ..|.+||+.+++.
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 788999988 654221100 012233444555 443 333321 2799999999988
Q ss_pred EeeeccCCC----cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE-EecCC--eEEEEe
Q 010784 338 VMTPAICKP----ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL-HMDPY--KIVTGG 409 (501)
Q Consensus 338 ~~~~~~~~~----~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~--~~l~~g 409 (501)
...+..+.. .+.+++|+|||+++++++.++ ++||.+.... . ...+..|...|..+ .|+|+ .+++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~ 398 (741)
T 2ecf_A 325 RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAALTHGNWSVDELLAVDEKAGLAYFRA 398 (741)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEESCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeeeeecceEEEeEeEEeCCCCEEEEEE
Confidence 776665543 446889999999988888877 7888765321 1 36677777888887 59999 455666
Q ss_pred cCCC--cEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--CceEEEeecc
Q 010784 410 RDDL--RINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--PGLLQFRDFS 470 (501)
Q Consensus 410 s~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--~g~i~~w~~~ 470 (501)
+.++ .++||++.. +.....+. . ...+..++|+|||++|+....+. ...+.+++..
T Consensus 399 ~~~~~~~~~l~~~~~~g~~~~~l~-----~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 399 GIESARESQIYAVPLQGGQPQRLS-----K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CSSCTTCBEEEEEETTCCCCEECC-----C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred eCCCCceEEEEEEEcCCCCeeecc-----c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 6666 899999864 55556663 1 44577999999999988765321 2467777754
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.4e-23 Score=218.19 Aligned_cols=330 Identities=9% Similarity=-0.035 Sum_probs=237.0
Q ss_pred CeeeEEEecCCCCceEEeeCCcEEEeecCC------eeeEEEEecccccccceecccCCcce-------eEEEeeccCcC
Q 010784 101 PLDVCFYSVAKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSESYYRATLSDHKARI-------TCMRLFPLHET 167 (501)
Q Consensus 101 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~ 167 (501)
.....+..+...+.+++|||||.+||.++. +..|.+|+..++ + ...+..|...+ ..++|+|
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g-~-~~~lt~~~~~~~~~~~~~~~~~~Sp---- 116 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-E-IKRITYFSGKSTGRRMFTDVAGFDP---- 116 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-E-EEECCCCCEEEETTEECSEEEEECT----
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC-C-eEEcccCCCcccccccccccccCCC----
Confidence 334455667777999999999999998754 358999998864 3 67788999988 9999999
Q ss_pred cccccCCCCcCcEEEEeeCC----C--ceEEec--CCce-----------------------------------------
Q 010784 168 SLFRSEPQRTENVLVTSSCD----H--SIRLWW--KGSC----------------------------------------- 198 (501)
Q Consensus 168 ~~~~~~~~~~~~~l~s~~~d----g--~i~vwd--~~~~----------------------------------------- 198 (501)
||+++++++.+ + .|.+|+ .+..
T Consensus 117 ---------Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~l 187 (1045)
T 1k32_A 117 ---------DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKI 187 (1045)
T ss_dssp ---------TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred ---------CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCE
Confidence 66766666644 3 355555 2211
Q ss_pred --------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 199 --------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 199 --------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
...+.+|...+.++.|+ ++ .++++++.|+.+++|.++.... ....+..|. .+...+|+| +
T Consensus 188 w~~~~~~~~~~l~~~~~~v~~~~~s----~d-~l~~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~-~~~~~~~Sp-D 255 (1045)
T 1k32_A 188 WIEVNSGAFKKIVDMSTHVSSPVIV----GH-RIYFITDIDGFGQIYSTDLDGK-----DLRKHTSFT-DYYPRHLNT-D 255 (1045)
T ss_dssp EEEEETTEEEEEECCSSCCEEEEEE----TT-EEEEEECTTSSCEEEEEETTSC-----SCEECCCCC-SSCEEEEEE-S
T ss_pred EEECCCCCeEECcCCCCcccceEEe----CC-EEEEEEeccCceEEEEEeCCCC-----cceEecCCC-CcceeeEcC-C
Confidence 11224567778888886 55 6777888899999998765322 244455554 456779998 6
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecc------cceecCCCceeeecC-CCe--EEEEeCCcEEEEEcCCCceEeee
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCV------GMTSVPGVPVDMKCH-ESM--LYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
++.++++ .++.|.+||+...+.. ..... ........+..+.++ +++ ++++..+.+.+|++..++... +
T Consensus 256 G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~ 332 (1045)
T 1k32_A 256 GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V 332 (1045)
T ss_dssp SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-C
T ss_pred CCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-c
Confidence 7777776 4899999998443221 11100 000122345566666 654 455556789999998876543 5
Q ss_pred ccCCC-cEEEEEEcCCCcEEEEEcCCc-EE-EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 342 AICKP-ILHSFSIMPSKSLICTGGIGK-AM-TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 342 ~~~~~-~v~~v~~~~~~~~l~~~~~d~-i~-iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
..|.. .+..++|+ +|+.++.++++. +. +||+..++. ..+.+|...+..++|+|+ +.+++++.++.|++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-------~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~ 404 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT 404 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-------eEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence 56677 89999999 999999988877 88 999887543 334477788999999999 88888889999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--------CceEEEeeccCCc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--------PGLLQFRDFSNAT 473 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--------~g~i~~w~~~~~~ 473 (501)
||+.+++....+ .+|...+..++|||||++|++++.+. ++.|++||+..+.
T Consensus 405 ~d~~tg~~~~~~-----~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 405 VDLETGKPTVIE-----RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EETTTCCEEEEE-----ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCceEEec-----cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999877666 34667789999999999999887421 2589999976544
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=9.3e-23 Score=189.04 Aligned_cols=301 Identities=6% Similarity=-0.016 Sum_probs=206.4
Q ss_pred CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCceEEec--CC
Q 010784 120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHSIRLWW--KG 196 (501)
Q Consensus 120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd--~~ 196 (501)
..+..+++++.++.|.+||..++ +....+..+...+ .++|+| +++++++++. ++.|.+|| ++
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~-------------dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITS-------------DCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECS-------------SSCEEEEEESTTCEEEEEECSSS
T ss_pred CCCEEEEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcC-------------CCCEEEEEeCCCCeEEEEECCCC
Confidence 34566788889999999999985 6666666666677 999999 7886665555 89999999 55
Q ss_pred ce-eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC---cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe
Q 010784 197 SC-QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA---TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF 272 (501)
Q Consensus 197 ~~-~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 272 (501)
+. ...+..+..+..+++|+ +++++++++..++ .|.+||+.+++. +..+.. .....+++|+|++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDIT----PDDQFAVTVTGLNHPFNMQSYSFLKNKF------ISTIPI-PYDAVGIAISPNGNG 141 (331)
T ss_dssp SCEEEEEEECSSCCCCEEEC----TTSSEEEECCCSSSSCEEEEEETTTTEE------EEEEEC-CTTEEEEEECTTSSC
T ss_pred ceeEEecccCCCCccceEEC----CCCCEEEEecCCCCcccEEEEECCCCCe------EEEEEC-CCCccceEECCCCCE
Confidence 55 66666666666669997 8999999666553 899999988763 444443 344689999984444
Q ss_pred EEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784 273 LLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF 351 (501)
Q Consensus 273 ~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v 351 (501)
++++...++. |.+|++.....+.. .. ...+ .....+..+
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~-----------------------------------~~----~~~~-~~~~~~~~~ 181 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFD-----------------------------------TG----QEFI-SGGTRPFNI 181 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEE-----------------------------------EE----EEEE-CSSSSEEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEee-----------------------------------cC----Cccc-cCCCCccce
Confidence 5666666688 99999875422110 00 0111 224457899
Q ss_pred EEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccc--
Q 010784 352 SIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGML-- 425 (501)
Q Consensus 352 ~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~-- 425 (501)
+|+|+|++++++ ..++ |++||+.+++.. ..+..+.. ...+..++|+|+ + ++++...++.|.+||+.+++.
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence 999999865554 4566 999999886641 11245543 366789999999 5 556655688999999998877
Q ss_pred ccccccCC--CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee-ecCCCCceeeeccc
Q 010784 426 ANSLLCNY--PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL-KHEVQNDSKFWGPQ 491 (501)
Q Consensus 426 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~-s~~~d~~~~~w~~~ 491 (501)
+..+..+. ..........++|+|||++|++++. .++.|.+||+.......+ .....+.+.++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~ 325 (331)
T 3u4y_A 258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN-ISRELKVFTISGKVVGYVAGIEANGGIAICHPD 325 (331)
T ss_dssp EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTSCEEEECTTCCCBSCEEECCCC
T ss_pred ecccccccccCCCCcccccceEECCCCCEEEEecC-CCCcEEEEEecCCcccceecccccCCeEEECCc
Confidence 33332210 0111122356899999999877764 568999999987665444 33445556666554
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5.4e-23 Score=196.13 Aligned_cols=233 Identities=11% Similarity=0.047 Sum_probs=182.1
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC---ceEEec--CCceeeeccCCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH---SIRLWW--KGSCQRCFKGHN 206 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~vwd--~~~~~~~~~~h~ 206 (501)
+.|++||... ...+.+.+|.+.|.+++|+| +|++|++++.++ .|++|| +++. ..+..|.
T Consensus 159 ~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Sp-------------dg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~ 222 (415)
T 2hqs_A 159 YELRVSDYDG--YNQFVVHRSPQPLMSPAWSP-------------DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP 222 (415)
T ss_dssp EEEEEEETTS--CSCEEEEEESSCEEEEEECT-------------TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCS
T ss_pred ceEEEEcCCC--CCCEEEeCCCCcceeeEEcC-------------CCCEEEEEEecCCCcEEEEEECCCCcE-EEeecCC
Confidence 8999999974 45678889999999999999 899999999885 999999 4444 4567788
Q ss_pred CceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784 207 GPVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS- 281 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg- 281 (501)
..+.+++|+ |+|+.|+ +++.++. |++||+.++. ...+..|...+.+++|+| +++.|++++. ++
T Consensus 223 ~~~~~~~~s----pdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~ 290 (415)
T 2hqs_A 223 RHNGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGR 290 (415)
T ss_dssp SCEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECT-TSSEEEEEECTTSS
T ss_pred CcccCEEEc----CCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECC-CCCEEEEEECCCCC
Confidence 899999997 8999777 6666665 9999998765 356777888999999998 6777777775 44
Q ss_pred -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
.|.+||+.+++. ..+..+...+.+++|+|+|++|
T Consensus 291 ~~i~~~d~~~~~~---------------------------------------------~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 291 PQVYKVNINGGAP---------------------------------------------QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp CEEEEEETTSSCC---------------------------------------------EECCCSSSEEEEEEECTTSSEE
T ss_pred cEEEEEECCCCCE---------------------------------------------EEEecCCCcccCeEECCCCCEE
Confidence 677778776532 1222355678899999999999
Q ss_pred EEEcCC---c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---cEEEEeCCCcccccccccC
Q 010784 361 CTGGIG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---RINIWETDTGMLANSLLCN 432 (501)
Q Consensus 361 ~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~ 432 (501)
++++.+ . |++||+.+++. ..+..+. .+.+++|+|+ ++++.++.++ .|++||+. +.....+
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~-------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l--- 393 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGV-------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL--- 393 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEEC---
T ss_pred EEEECcCCceEEEEEECCCCCE-------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEe---
Confidence 888743 4 99999998653 3444444 8999999999 7666666666 79999986 5556677
Q ss_pred CCCCCCcceeeeEeecccc
Q 010784 433 YPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~ 451 (501)
..|...|..++|+|.-.
T Consensus 394 --~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 394 --PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp --CCSSSEEEEEEECCCCC
T ss_pred --eCCCCCCcCCccccccc
Confidence 45678899999999643
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=7.4e-23 Score=201.11 Aligned_cols=296 Identities=11% Similarity=0.064 Sum_probs=212.7
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEec--ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-CCC
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNF--LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS-CDH 188 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg 188 (501)
.+..++++|+|+++++++.++.|.+||+ .++ +.+.++.. ...+..++|+|.. .++|+++++++ .++
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~-g~~p~~va~sp~~---------~~dg~~l~v~~~~~~ 248 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKI-GIEARSVESSKFK---------GYEDRYTIAGAYWPP 248 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEEC-CSEEEEEEECCST---------TCTTTEEEEEEEESS
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEec-CCCcceEEeCCCc---------CCCCCEEEEEEccCC
Confidence 3788999999999999999999999999 664 66777764 4567899998700 00367888877 489
Q ss_pred ceEEec--CCceeeeccCC-----------CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccce-ee
Q 010784 189 SIRLWW--KGSCQRCFKGH-----------NGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALK-AT 253 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h-----------~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~ 253 (501)
+|.||| +++++..+..+ ...+.++.++ + .+.++++...++.|.+||+.+.+. +. ..
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s----~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~ 319 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS----HEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTS 319 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC----SSSSEEEEEETTTTEEEEEECTTSSS-----CEEEE
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEEC----CCCCEEEEEECCCCeEEEEEecCCCc-----ceeEE
Confidence 999999 67777766542 2368889987 4 445677788899999999987653 11 23
Q ss_pred ccCCCCceeEEEEeecCCeEEE-EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC-CeEEEEe---CCcEE
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLV-TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE-SMLYIAS---GSSVV 328 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~ 328 (501)
+ .+...+..+.|+| ++++++ ++..+++|.+||..+++.+..... ....+.+....+...+ ..++++. ++.|.
T Consensus 320 i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 320 I-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDV-GKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp E-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred e-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeecc-CCCCCCCCCcccCCCCCccEEEeccCCCceEE
Confidence 3 3566788899998 666555 555689999999999876544321 1112222222332222 3334433 25899
Q ss_pred EEEcCC-------CceEeeeccCCCcEEEEEEcCCCcEEEEEc-------CCc-EEEEecCCCCCCCCCCCccc---ccC
Q 010784 329 TIDLRT-------MQKVMTPAICKPILHSFSIMPSKSLICTGG-------IGK-AMTWDIRRSQDAVKPQPMAE---LDG 390 (501)
Q Consensus 329 ~~d~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-------~d~-i~iwd~~~~~~~~~~~~~~~---~~~ 390 (501)
+||+.+ .+.+.++.+|.+.+..++++|++++|++++ .+. |.+||+.+.+...+.-++.. +..
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 999998 888999999988889999999999999987 144 99999999875411111111 245
Q ss_pred cccCeEEEEecCC--eEEEEe----cCCCcEEEEeCCCcccccccc
Q 010784 391 HVGSVTQLHMDPY--KIVTGG----RDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 391 h~~~v~~l~~~~~--~~l~~g----s~dg~i~iwd~~~~~~~~~~~ 430 (501)
+...+..+.|+|+ .++++. +.|+.|.|||..+++++.++.
T Consensus 477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 5778999999999 444442 247999999999999999884
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1e-22 Score=185.36 Aligned_cols=257 Identities=12% Similarity=0.051 Sum_probs=184.4
Q ss_pred eecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-Cceeeec
Q 010784 126 TQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-GSCQRCF 202 (501)
Q Consensus 126 ~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-~~~~~~~ 202 (501)
..++.++.|.+||+.++ +. ..+..|...|.+++|+| ++++|++++ ++.|.+|| . ++.....
T Consensus 16 ~~~~~~~~i~~~d~~~~-~~-~~~~~~~~~v~~~~~sp-------------dg~~l~~~~-~~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTR-KM-RVVWQTPELFEAPNWSP-------------DGKYLLLNS-EGLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp --CCCCEEEEEEETTTT-EE-EEEEEESSCCEEEEECT-------------TSSEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred CCCCcceeEEEEeCCCC-ce-eeeccCCcceEeeEECC-------------CCCEEEEEc-CCeEEEEeCCCCCCceEec
Confidence 35677999999999874 33 35667899999999999 889999987 88999999 4 5555555
Q ss_pred cCC-CCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC
Q 010784 203 KGH-NGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK 279 (501)
Q Consensus 203 ~~h-~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~ 279 (501)
..| ...+.+++|+ +++++|++++ .++...+|.++.... ....+..+. .+..++|+|++..++++++.
T Consensus 80 ~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 80 TGFATICNNDHGIS----PDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTKNL-PSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CTTCCCBCSCCEEC----TTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCSSS-SEEEEEECTTSSEEEEEEEE
T ss_pred cccccccccceEEC----CCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeecCC-CccceEECCCCCEEEEEECC
Confidence 555 4778999997 8999999998 445666766653222 133444333 48889999844444448888
Q ss_pred CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE
Q 010784 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL 359 (501)
Q Consensus 280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 359 (501)
++.+++|++..... ....+..+...+.+++|+|++++
T Consensus 150 ~~~~~l~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 150 DQVFDIYSMDIDSG-------------------------------------------VETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp TTEEEEEEEETTTC-------------------------------------------CEEECCCSSSCEEEEEECTTSSE
T ss_pred CCceEEEEEECCCC-------------------------------------------cceEcccCCCccccceECCCCCE
Confidence 99999998643210 11223346678899999999998
Q ss_pred EEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC-----------CcEEEEeCCCccc
Q 010784 360 ICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD-----------LRINIWETDTGML 425 (501)
Q Consensus 360 l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d-----------g~i~iwd~~~~~~ 425 (501)
++.++ .++ +++|++.... ..+..+..|...+..++|+|+ ++++.++.+ +.|.+||+.+++.
T Consensus 187 l~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDG-----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEECTTSSCEEEEEETTS-----SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EEEEecCCCCccEEEECCCC-----CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 77665 466 9999886322 123667777888999999999 666655554 5699999988765
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 459 (501)
...... .+|...+..++|+|+|++|++++.+
T Consensus 262 ~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 262 ETLFDL---FGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEE---EESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred eeeecc---CCCCcccccceECCCCCEEEEEEec
Confidence 433311 2456678999999999999998854
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=5.7e-22 Score=211.35 Aligned_cols=305 Identities=8% Similarity=0.013 Sum_probs=217.7
Q ss_pred ceEEeeCCcEEEeecCCe------eeEEEEecccccccc-----------------------------------------
Q 010784 114 DHILLDNNDIFSTQGSSI------QNIKIDNFLSESYYR----------------------------------------- 146 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d------~~i~vw~~~~~~~~~----------------------------------------- 146 (501)
..++|+|||.++++++.+ ..+.+|++.++ ...
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-NFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-EEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCC-CeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 889999999977777754 45667776543 211
Q ss_pred --------eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEee
Q 010784 147 --------ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDK 215 (501)
Q Consensus 147 --------~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s 215 (501)
..+.+|...+.++.|++ + .++++++.||+++||. .+.....+..|. .+...+|+
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~-------------d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~S 253 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVG-------------H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLN 253 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEET-------------T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEE
T ss_pred EECCCCCeEECcCCCCcccceEEeC-------------C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEc
Confidence 11234555566666665 5 6777888899999996 355566666565 46677887
Q ss_pred ecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-----------CCCceeEEEEe-ecCCeEEEEEeCCCeE
Q 010784 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-----------HEKPIKLMSVA-GHKSFLLVTISKDSKV 283 (501)
Q Consensus 216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~~l~s~s~dg~v 283 (501)
++|+.|+.+ .++.|.+||+.... +..+.. |...+..++|+ | +++.+++++ ++.|
T Consensus 254 ----pDG~~la~~-~~~~i~~~d~~~~~-------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i 319 (1045)
T 1k32_A 254 ----TDGRRILFS-KGGSIYIFNPDTEK-------IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQA 319 (1045)
T ss_dssp ----ESSSCEEEE-ETTEEEEECTTTCC-------EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEE
T ss_pred ----CCCCEEEEE-eCCEEEEecCCceE-------eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEE
Confidence 789988887 48999999994332 223433 34578999999 8 677787777 7899
Q ss_pred EEEECCCCccccceecccceecCC-CceeeecCCCeEEEE--eC-CcEE-EEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPG-VPVDMKCHESMLYIA--SG-SSVV-TIDLRTMQKVMTPAICKPILHSFSIMPSKS 358 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~i~-~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~ 358 (501)
.+|++.+++.... ..... .+..+.++ +...++ +. ..+. +||+.+++.... ..|...+..++|+|||+
T Consensus 320 ~~~~~~~~~~~~~------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 320 FIQDVSGTYVLKV------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EEECTTSSBEEEC------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSS
T ss_pred EEEcCCCCceEEc------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCC
Confidence 9999987653221 12222 44555666 543333 33 2666 778887765443 37788999999999999
Q ss_pred EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC----------CcEEEEeCCCcccc
Q 010784 359 LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD----------LRINIWETDTGMLA 426 (501)
Q Consensus 359 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d----------g~i~iwd~~~~~~~ 426 (501)
+|++++.++ |++||+.+++.. ..+.+|.+.+.+++|+|+ ++++.++.+ +.|++||+.+++ +
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~ 464 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPT------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-I 464 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEE------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-E
T ss_pred EEEEECCCCeEEEEECCCCceE------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-E
Confidence 999999888 999999987643 455578889999999999 766665554 489999999877 5
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
..+ ..|...+..++|+|||++|++++ .++...+|+..
T Consensus 465 ~~l-----~~~~~~~~~~~~spdG~~l~~~s--~~~~~~~~~~~ 501 (1045)
T 1k32_A 465 FAA-----TTENSHDYAPAFDADSKNLYYLS--YRSLDPSPDRV 501 (1045)
T ss_dssp EEC-----SCSSSBEEEEEECTTSCEEEEEE--SCCCCCEECSS
T ss_pred EEe-----eCCCcccCCceEcCCCCEEEEEe--cccCCcCcchh
Confidence 555 34566788899999999999988 45666667643
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.6e-22 Score=204.58 Aligned_cols=313 Identities=10% Similarity=-0.065 Sum_probs=209.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC--
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-- 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 187 (501)
+.+++|+|||.++++ +.|+.+++||..++ +....+.+|.. .|.+++||| ||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~Sp-------------Dg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISP-------------DREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECT-------------TSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCC-cEEEEeccccccccccceEEECC-------------CCCEEEEEecCcc
Confidence 678899999998776 68899999999986 66667777765 499999999 89999998865
Q ss_pred -------CceEEec--CCce--eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 188 -------HSIRLWW--KGSC--QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 188 -------g~i~vwd--~~~~--~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+.|.+|| .++. +....+|...+..++|+ |+|+.|+.++. +.|++||+.++.. ......
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S----PdG~~la~~~~-~~i~~~~~~~g~~------~~~~~~ 152 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG----PKGQQLIFIFE-NNIYYCAHVGKQA------IRVVST 152 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC----SSTTCEEEEET-TEEEEESSSSSCC------EEEECC
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEEC----CCCCEEEEEEC-CeEEEEECCCCce------EEEecC
Confidence 6788999 3433 22233455568899997 89999999886 7999999988763 333333
Q ss_pred CCCc------------------eeEEEEeecCCeEEEEEeCCC----------------------------------eEE
Q 010784 257 HEKP------------------IKLMSVAGHKSFLLVTISKDS----------------------------------KVR 284 (501)
Q Consensus 257 ~~~~------------------v~~l~~~~~~~~~l~s~s~dg----------------------------------~v~ 284 (501)
+... +.+++|+| +++.|++++.|+ .|+
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 3332 37899998 777888877543 799
Q ss_pred EEECCCCccccceecccc-eecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEeeecc-CCCcE----EEE
Q 010784 285 VWDTSTSSAVRSSCCVGM-TSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMTPAI-CKPIL----HSF 351 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~-~~~~v----~~v 351 (501)
+||+.+++.......... ......+..+.+++++.+++.. ..+.+||+.+++....+.. +...+ ..+
T Consensus 232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence 999988764222111000 0113345567777777655321 2699999999887665543 33433 378
Q ss_pred EEcCCCcEEEEE-c--CC----c--EEEEec-CCCCCCCCCCCcccccCcccCeEE-EEecCC-eEE-EEecCC--CcEE
Q 010784 352 SIMPSKSLICTG-G--IG----K--AMTWDI-RRSQDAVKPQPMAELDGHVGSVTQ-LHMDPY-KIV-TGGRDD--LRIN 416 (501)
Q Consensus 352 ~~~~~~~~l~~~-~--~d----~--i~iwd~-~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~-~~l-~~gs~d--g~i~ 416 (501)
+|+|||+.|+.. + ++ . |.+||. ..++. .....+..+...+.. ++|+|+ +.| +++..+ +.++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 999999876653 2 33 2 777883 43320 001344433344544 699999 544 455444 8899
Q ss_pred EEeCCCcc--cccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 417 IWETDTGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 417 iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
+|++.... ....+... ..+...+..++|+|||++|+....
T Consensus 388 l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 388 LYSANTVGNFNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEEECSSTTCCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEEeCCCCCCcceeccc--ccCCCCeEEEEECCCCCEEEEEcc
Confidence 99987532 33334210 014566889999999998887543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.8e-22 Score=206.94 Aligned_cols=313 Identities=12% Similarity=0.031 Sum_probs=208.0
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccc-eecccCC-----------------cceeEEEeeccCcCcccccCC
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYR-ATLSDHK-----------------ARITCMRLFPLHETSLFRSEP 174 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~-~~~~~h~-----------------~~V~~~~~~~~~~~~~~~~~~ 174 (501)
++.+.|. ++.++ +++.++ | +||..++ +.+ ..+..|. ..|.+++|+|
T Consensus 28 ~~~~~w~-g~~~~-~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp----------- 91 (706)
T 2z3z_A 28 VVGLQWM-GDNYV-FIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG----------- 91 (706)
T ss_dssp CTTCEEE-TTEEE-EEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETT-----------
T ss_pred CCCCcCc-CCeEE-EEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECC-----------
Confidence 5667777 44444 444566 7 9999986 442 3333333 4699999999
Q ss_pred CCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-----CCccccc
Q 010784 175 QRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-----SGKRGQQ 248 (501)
Q Consensus 175 ~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~ 248 (501)
+ ..++.+. ++.|++|| .......+..+...+.+++|+ |+|+.|+++ .|+.|++||+.+ ++.
T Consensus 92 --d-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~S----pdG~~la~~-~~~~i~v~~~~~~~~~~g~~---- 158 (706)
T 2z3z_A 92 --R-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFS----PVGDRVAYV-RNHNLYIARGGKLGEGMSRA---- 158 (706)
T ss_dssp --T-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEEC----TTSSEEEEE-ETTEEEEEECBCTTSCCCCC----
T ss_pred --C-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCC----CCCCEEEEE-ECCeEEEEecCcccccCCCc----
Confidence 7 5555543 69999999 334444555677788999997 899999985 689999999988 553
Q ss_pred cceeeccCCCCc--------------eeEEEEeecCCeEEEEEe---------------------------------CCC
Q 010784 249 ALKATLYGHEKP--------------IKLMSVAGHKSFLLVTIS---------------------------------KDS 281 (501)
Q Consensus 249 ~~~~~~~~~~~~--------------v~~l~~~~~~~~~l~s~s---------------------------------~dg 281 (501)
......+... +.++.|+| +++.|++++ .+.
T Consensus 159 --~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 159 --IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp --EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred --EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 2222222222 47899998 788888887 457
Q ss_pred eEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe-CC-----cEEEEEcCCCceEeeec--cCCC---cE
Q 010784 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS-GS-----SVVTIDLRTMQKVMTPA--ICKP---IL 348 (501)
Q Consensus 282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-----~i~~~d~~~~~~~~~~~--~~~~---~v 348 (501)
.|++||+.+++...... .......+..+.++++.. +++. .. .+.+||+.+++....+. .+.. .+
T Consensus 236 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 89999998875422110 012234456677776653 3322 22 79999999984333322 1222 24
Q ss_pred EEEEEcC--CCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCcccCeEE-EEecCC--eEEEEecCCC----cEEE
Q 010784 349 HSFSIMP--SKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQ-LHMDPY--KIVTGGRDDL----RINI 417 (501)
Q Consensus 349 ~~v~~~~--~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~--~~l~~gs~dg----~i~i 417 (501)
.+++|+| +|+++++++.++ +++|++. .++. +..+..|...+.. ++|+|+ .++++++.++ .|..
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~------~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL------IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE------EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCE------EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 6789999 999999998877 8888876 3332 3566667777877 799999 5666665665 6777
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--CceEEEeeccCCc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--PGLLQFRDFSNAT 473 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--~g~i~~w~~~~~~ 473 (501)
||+.+++ ...+. +...+..++|+|||++|+.+..+. .+.|++||+..+.
T Consensus 387 ~d~~~~~-~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 387 IDIKGGK-TKDLT------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EETTCCC-CEESC------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEcCCCC-ceecc------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7877765 33442 345688999999999988775432 2579999987765
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.5e-21 Score=181.76 Aligned_cols=277 Identities=10% Similarity=0.110 Sum_probs=183.3
Q ss_pred cEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-CceEEec-C--
Q 010784 122 DIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-HSIRLWW-K-- 195 (501)
Q Consensus 122 ~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~i~vwd-~-- 195 (501)
..++++++.++.|++|++.... +.+.. ..|...+.+++|+| ++++|++++.+ +.|.+|+ .
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~~v~~~~~~~~ 70 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP-------------DKRYLYVGVRPEFRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT-------------TSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECC-------------CCCEEEEeecCCCeEEEEEecCC
Confidence 3455566789999999985321 22222 35777899999999 78988888876 9999998 2
Q ss_pred -Cc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784 196 -GS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271 (501)
Q Consensus 196 -~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 271 (501)
+. .+..+..+. .+.+++|+ +++++|++++. ++.|.+||+..+.. ......+..+ ..+.+++|+| ++
T Consensus 71 ~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~-~~~~~~~~s~-dg 140 (343)
T 1ri6_A 71 DGALTFAAESALPG-SLTHISTD----HQGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGL-DGCHSANISP-DN 140 (343)
T ss_dssp TCCEEEEEEEECSS-CCSEEEEC----TTSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCC-TTBCCCEECT-TS
T ss_pred CCceeeccccccCC-CCcEEEEc----CCCCEEEEEecCCCeEEEEECCCCcc---ccccccccCC-CCceEEEECC-CC
Confidence 22 233444434 78899997 88987776654 88999999952211 1123344433 4578899998 56
Q ss_pred eEEEEEe-CCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcE
Q 010784 272 FLLVTIS-KDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPIL 348 (501)
Q Consensus 272 ~~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v 348 (501)
+.+++++ .++.|.+||+.+ ++..... ..... .....+
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~ 180 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQD----------------------------------------PAEVTTVEGAGP 180 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEE----------------------------------------EEEEECSTTCCE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeec----------------------------------------ccccccCCCCCc
Confidence 6666665 899999999986 4321000 00111 123467
Q ss_pred EEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCccc---ccC---cccCeEEEEecCC--eEEEEecCCCcEEEE
Q 010784 349 HSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAE---LDG---HVGSVTQLHMDPY--KIVTGGRDDLRINIW 418 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~---~~~---h~~~v~~l~~~~~--~~l~~gs~dg~i~iw 418 (501)
..++|+|+++++++++ .++ |.+||+...... ...... +.. ....+..++|+|+ .+++++..++.|.+|
T Consensus 181 ~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 181 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 8899999999765554 666 999999642111 011111 111 1335678999999 455566689999999
Q ss_pred eCC--C--cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 419 ETD--T--GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 419 d~~--~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
|+. + .+.+..+. .+ ..+..++|+|+|++|++++. .++.|.+|++..
T Consensus 259 d~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~ 308 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQP-----TE-TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVG 308 (343)
T ss_dssp EECTTSCCEEEEEEEE-----CS-SSCCCEEECTTSSEEEEECT-TTCEEEEEEEET
T ss_pred EEcCCCCceEEeeeec-----CC-CccceEEECCCCCEEEEecC-CCCeEEEEEEcC
Confidence 998 2 33444442 12 23788999999999888874 469999997764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=5.4e-21 Score=178.79 Aligned_cols=270 Identities=9% Similarity=0.044 Sum_probs=198.6
Q ss_pred cCCCCceEEeeCCcEEEeecCC-------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc-E
Q 010784 109 VAKPHDHILLDNNDIFSTQGSS-------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-V 180 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (501)
....+..+++++++.++++++. ++.|.+||..++ +....+... ..+..++|+| +++ +
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~-------------dg~~l 103 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHND-LKPFGATINN-------------TTQTL 103 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEES-SCCCSEEEET-------------TTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecC-CCcceEEECC-------------CCCEE
Confidence 3456789999999877765552 679999999885 666665543 4478899999 777 4
Q ss_pred EEEeeCCCceEEec--CCceeeeccCCCCc---------eEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCcccc
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGP---------VSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~---------v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~ 247 (501)
++++..++.|.+|| +++.+..+..+... +.+++|+ ++++++++++ .++.|.+||..+++
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~i~~~d~~~~~---- 175 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD----DATNTVYISGIGKESVIWVVDGGNIK---- 175 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE----TTTTEEEEEEESSSCEEEEEETTTTE----
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC----CCCCEEEEEecCCCceEEEEcCCCCc----
Confidence 55566689999999 66666666554322 6889997 7888777766 47889999998876
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
....+..+...+..++|+| +++.+++++.++.|.+||+.+++.......
T Consensus 176 --~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~---------------------------- 224 (353)
T 3vgz_A 176 --LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL---------------------------- 224 (353)
T ss_dssp --EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC----------------------------
T ss_pred --eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc----------------------------
Confidence 3555554566678899998 677888888899999999988754221110
Q ss_pred EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--
Q 010784 328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-- 403 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-- 403 (501)
...++...+.+++|+|+++++++++. ++ |.+||..+++.. ..+.... ...++|+|+
T Consensus 225 ------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------~~~~~~~--~~~~~~s~dg~ 284 (353)
T 3vgz_A 225 ------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL------AKVAAPE--SLAVLFNPARN 284 (353)
T ss_dssp ------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE------EEEECSS--CCCEEEETTTT
T ss_pred ------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE------EEEEcCC--CceEEECCCCC
Confidence 00124556788999999987776664 45 999999887643 4443322 256899999
Q ss_pred eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.++++...++.|.+||..+++.+..+.. ...+..++|+|||++|+++..
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVKTFDT------PTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC------CSEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCeEEEEEec------CCCCCeEEEcCCCCEEEEEEc
Confidence 4777776899999999999998887742 236789999999998877764
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=4.2e-21 Score=197.93 Aligned_cols=281 Identities=11% Similarity=-0.028 Sum_probs=196.9
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC-----ceEEec--CCceeeeccCCCC-----------------
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH-----SIRLWW--KGSCQRCFKGHNG----------------- 207 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg-----~i~vwd--~~~~~~~~~~h~~----------------- 207 (501)
...|.+++|+| ||++|++++. || .|++|| +++....+..+..
T Consensus 36 ~~~~~~~~~Sp-------------dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (741)
T 2ecf_A 36 GPTLMKPKVAP-------------DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRER 102 (741)
T ss_dssp CCCCEEEEECT-------------TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------
T ss_pred CCCCCCceEec-------------CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhh
Confidence 45799999999 8999999998 88 899999 5555555544332
Q ss_pred -------ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC
Q 010784 208 -------PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280 (501)
Q Consensus 208 -------~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d 280 (501)
.|.+++|+ |+|++|++++. +.|.+||+.++.. .....+..|...+..++|+| +++.|++++ +
T Consensus 103 ~~~~~~~~v~~~~~S----pDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~ 171 (741)
T 2ecf_A 103 QRIAAMTGIVDYQWS----PDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-G 171 (741)
T ss_dssp ----CCEESCCCEEC----TTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-T
T ss_pred hhhccccCcceeEEC----CCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCC-CCCEEEEEe-C
Confidence 37889997 89999999886 8999999998720 01345667788899999998 788888887 4
Q ss_pred CeEEEEECCCCccccceeccccee-----------cCCCceeeecCCCe--EEEEe-CC---------------------
Q 010784 281 SKVRVWDTSTSSAVRSSCCVGMTS-----------VPGVPVDMKCHESM--LYIAS-GS--------------------- 325 (501)
Q Consensus 281 g~v~vwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~-~~--------------------- 325 (501)
+.|++||+.+++............ ....+..+.+++++ ++++. ++
T Consensus 172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 689999998875432211100000 00113445555554 33332 11
Q ss_pred ------------cEEEEEcCC-CceEeeec--cCCCcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCCCCCCCC
Q 010784 326 ------------SVVTIDLRT-MQKVMTPA--ICKPILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 326 ------------~i~~~d~~~-~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~ 384 (501)
.+.+||+.+ ++...... .|...+.+++| |||++|+.++. +. |++||+.+++..
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~----- 325 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR----- 325 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-----
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-----
Confidence 688889988 77654433 36778999999 99999887652 45 999999987643
Q ss_pred cccccCccc----CeEEEEecCC-eEEEEecCCCcEEEEeCC-CcccccccccCCCCCCCcceeee-EeeccccEEEEee
Q 010784 385 MAELDGHVG----SVTQLHMDPY-KIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEADISTGCS-AMAVSGCRIVTAS 457 (501)
Q Consensus 385 ~~~~~~h~~----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~ 457 (501)
..+..+.. .+..++|+|+ +++++++.||.++||.+. +++ ...+ ..+...+..+ .|+|+|+.|+..+
T Consensus 326 -~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-----~~~~~~v~~~~~~s~dg~~l~~~~ 398 (741)
T 2ecf_A 326 -VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-----THGNWSVDELLAVDEKAGLAYFRA 398 (741)
T ss_dssp -EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-----CCSSSCEEEEEEEETTTTEEEEEE
T ss_pred -EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-----eecceEEEeEeEEeCCCCEEEEEE
Confidence 33333332 4568899999 888888899988888775 344 5566 3345567776 5999999886655
Q ss_pred cCCCc--eEEEeeccC
Q 010784 458 YGEPG--LLQFRDFSN 471 (501)
Q Consensus 458 ~d~~g--~i~~w~~~~ 471 (501)
. .++ .+++|++..
T Consensus 399 ~-~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 399 G-IESARESQIYAVPL 413 (741)
T ss_dssp C-SSCTTCBEEEEEET
T ss_pred e-CCCCceEEEEEEEc
Confidence 3 334 899999865
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=4.7e-21 Score=183.24 Aligned_cols=248 Identities=8% Similarity=-0.009 Sum_probs=170.4
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc------------eeee-----ccCCCCceEEEEee
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS------------CQRC-----FKGHNGPVSTLSDK 215 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------~~~~-----~~~h~~~v~~l~~s 215 (501)
...++.+++++ ++.++++++.|| +++|+... .+.. ...+...|.+++|+
T Consensus 36 ~~~~n~lavs~-------------~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 101 (434)
T 2oit_A 36 KERSSLLAVSN-------------KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS 101 (434)
T ss_dssp CSCCBCEEEET-------------TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC
T ss_pred CCCccEEEEec-------------CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc
Confidence 44689999998 788999999888 88886110 0110 11356679999997
Q ss_pred ecCCCCCCEEE----EeeCCCcEEEEeccCC-----CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE
Q 010784 216 LLGDGSGKILA----SGGEDATVRLWSLSSS-----GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW 286 (501)
Q Consensus 216 ~~~~~~~~~l~----sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw 286 (501)
+++++|+ +|+.|+.|++||+.+. ...........+.+|...|.+++|+|.++.+|++++.||.|++|
T Consensus 102 ----pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 102 ----CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp ----TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ----CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 8899999 8999999999999764 11001112456678999999999999668899999999999999
Q ss_pred ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784 287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 366 (501)
|++++.. +....+|...|.+++|+|+|++|++|+.|
T Consensus 178 D~~~~~~--------------------------------------------~~~~~~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 178 QVTETVK--------------------------------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp EESSSEE--------------------------------------------EEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred EcCCCcc--------------------------------------------eeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence 9987632 12233477889999999999999999998
Q ss_pred c-EEEEecCCCCCCCCCCCccccc-------CcccCeEEEEecCC-eEEEE-ecCCCc------EEEEeCCCcccc--cc
Q 010784 367 K-AMTWDIRRSQDAVKPQPMAELD-------GHVGSVTQLHMDPY-KIVTG-GRDDLR------INIWETDTGMLA--NS 428 (501)
Q Consensus 367 ~-i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~-~~l~~-gs~dg~------i~iwd~~~~~~~--~~ 428 (501)
+ |++||.+ ++.. ..+. .|...|.+++|+++ .++++ ++.||. +++|++...+.. ..
T Consensus 214 g~v~iwd~~-~~~~------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~ 286 (434)
T 2oit_A 214 GTVVQYLPT-LQEK------KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI 286 (434)
T ss_dssp SCEEEECTT-CCEE------EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE
T ss_pred CcEEEEccC-Cccc------ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcc
Confidence 8 9999998 3221 2221 24458999999999 55533 344543 899999864311 11
Q ss_pred cccCCCC-----CCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 429 LLCNYPE-----EADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 429 ~~~~~~~-----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+...... ....+-..+.+-++.+++++++. ..+.|.+....
T Consensus 287 ~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~ 332 (434)
T 2oit_A 287 FVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQ 332 (434)
T ss_dssp EEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEEC
T ss_pred eEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEec
Confidence 1110000 11222223334488888888776 45666666644
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=2.3e-20 Score=178.54 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=150.6
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccc---------cce-----ecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---------YRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---------~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
.++.+++++++.++++|+.++ +++|+...... ... ....|.+.|++++|+| +
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------------d 103 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-------------D 103 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-------------T
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-------------C
Confidence 489999999999999998888 88887542100 000 1123566799999999 8
Q ss_pred CcEEE----EeeCCCceEEec--CC--------c---eeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEec
Q 010784 178 ENVLV----TSSCDHSIRLWW--KG--------S---CQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSL 239 (501)
Q Consensus 178 ~~~l~----s~~~dg~i~vwd--~~--------~---~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~ 239 (501)
+++|+ +|+.|++|+||| .+ + .+..+.+|...|.+++|+ ++ +.+|++|+.||+|++||+
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN----PTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC----SSCTTEEEEEETTSCEEEEEE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC----CCCCCEEEEEECCCeEEEEEc
Confidence 89999 899999999998 22 1 145667899999999997 55 789999999999999999
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
+++. ......+|...|.+++|+| ++++|++|+.||.|++||++ ++.........
T Consensus 180 ~~~~------~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~------------------ 233 (434)
T 2oit_A 180 TETV------KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP------------------ 233 (434)
T ss_dssp SSSE------EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCT------------------
T ss_pred CCCc------ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCc------------------
Confidence 9874 3445567889999999998 68899999999999999998 32211100000
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CC------c-EEEEecCCCC
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IG------K-AMTWDIRRSQ 377 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d------~-i~iwd~~~~~ 377 (501)
.....|...+.+++|++++.++++.+ .+ . +++|++++.+
T Consensus 234 -------------------~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 234 -------------------FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp -------------------TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred -------------------ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 00012344789999999988886544 21 2 8999998753
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.6e-20 Score=170.63 Aligned_cols=240 Identities=10% Similarity=0.005 Sum_probs=174.8
Q ss_pred CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-ccccceecccC-CcceeEEEeeccCcCcccccCCCCc
Q 010784 100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-ESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
......+..+...+.+++|+|+|.++++++ ++.|.+||+.+ + +......+| ...|.+++|+| +
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~sp-------------d 95 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP-SPEKVDTGFATICNNDHGISP-------------D 95 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC-SCEECCCTTCCCBCSCCEECT-------------T
T ss_pred CCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC-CceEeccccccccccceEECC-------------C
Confidence 333445666788899999999999999986 78999999987 5 555555565 47899999999 8
Q ss_pred CcEEEEee--CCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccce
Q 010784 178 ENVLVTSS--CDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 178 ~~~l~s~~--~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
+++|++++ .++...||. .+.....+..+. .+.+++|+ ++++.|+ +++.++.+++|+++.... ..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~s----pdg~~l~~~~~~~~~~~l~~~~~~~~-----~~ 165 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWS----PDGKSFTYCGIRDQVFDIYSMDIDSG-----VE 165 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEEC----TTSSEEEEEEEETTEEEEEEEETTTC-----CE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEEC----CCCCEEEEEECCCCceEEEEEECCCC-----cc
Confidence 89999998 445677765 334445554443 48889997 7888777 788899999999764332 24
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI 330 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (501)
..+..+...+.++.|+| ++..++.++ .++.+++|++....
T Consensus 166 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~-------------------------------------- 206 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDG-------------------------------------- 206 (297)
T ss_dssp EECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS--------------------------------------
T ss_pred eEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCC--------------------------------------
Confidence 56667888999999998 566565554 68899999875221
Q ss_pred EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-----------c-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-----------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
..+..+..|...+.+++|+|++++|++++.+ . |++||+.+++. ..+..+.+|...+.++
T Consensus 207 -----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~ 277 (297)
T 2ojh_A 207 -----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSP 277 (297)
T ss_dssp -----SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSC
T ss_pred -----CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccc
Confidence 1122334456678899999999998888753 4 99999988653 2234455778889999
Q ss_pred EecCC-eEEEEecCC
Q 010784 399 HMDPY-KIVTGGRDD 412 (501)
Q Consensus 399 ~~~~~-~~l~~gs~d 412 (501)
+|+|+ +.|++++.+
T Consensus 278 ~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 278 NWSPDGDEFAYVRYF 292 (297)
T ss_dssp CBCTTSSEEEEEEEC
T ss_pred eECCCCCEEEEEEec
Confidence 99999 555544443
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.7e-20 Score=174.16 Aligned_cols=269 Identities=11% Similarity=0.049 Sum_probs=186.9
Q ss_pred EEEeecCCeeeEEEEecccccccceeccc-CCc-ceeEEEeeccCcCcccccCCCCcCcE-EEEeeCCCceEEec--CCc
Q 010784 123 IFSTQGSSIQNIKIDNFLSESYYRATLSD-HKA-RITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWW--KGS 197 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~dg~i~vwd--~~~ 197 (501)
.++++++.++.|.+||..++ +.+..+.. +.. .+..++|+| +++. +++++.++.|.+|| +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~-------------dg~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAP-------------GGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECT-------------TSSEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcC-------------CCCEEEEEeCCCCeEEEEECCCCC
Confidence 57888999999999999885 55655542 322 488899999 7765 46666789999999 566
Q ss_pred eeeeccC-C----CCceEEEEeeecCCCCCCEEEEee------------CCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 198 CQRCFKG-H----NGPVSTLSDKLLGDGSGKILASGG------------EDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 198 ~~~~~~~-h----~~~v~~l~~s~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
.+..+.. + ...+.+++|+ ++++++++++ .++.|.+||+.+++. ...+.. ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~ 136 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALS----PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR------RKAFEA-PRQ 136 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE------EEEEEC-CSS
T ss_pred eEeeEEcCCcccccccccceEEC----CCCCEEEEEecccccccccccccCceEEEEECCCCcE------EEEEeC-CCC
Confidence 6655542 1 2257788996 8998888886 579999999987652 444433 445
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC---------------
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS--------------- 325 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 325 (501)
+..++|+| ++++++++ ++.|.+||+.+++......... ......+..+...+++....
T Consensus 137 ~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 137 ITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209 (337)
T ss_dssp CCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred cceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc----cCCCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence 77889998 66666666 6889999999886543222111 00111222222211111110
Q ss_pred ----------cEEEEEcCCCceE-eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccC
Q 010784 326 ----------SVVTIDLRTMQKV-MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGS 394 (501)
Q Consensus 326 ----------~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~ 394 (501)
.+.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|++||+.+++.. ..+.. ...
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~------~~~~~-~~~ 281 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASI------KRVPL-PHS 281 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEE------EEEEC-SSC
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCc------ceecC-CCc
Confidence 4789999988764 3344566778899999999999888 334999999886543 44433 346
Q ss_pred eEEEEecCC-eEEEEecCCCcEEEEeCCCccccccccc
Q 010784 395 VTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 395 v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 431 (501)
+.+++|+|+ +.+++++.++.|++||+.+++.+..+..
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 789999999 6555567899999999999998888753
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.3e-19 Score=168.90 Aligned_cols=268 Identities=9% Similarity=0.067 Sum_probs=176.2
Q ss_pred CeeeEEEEecccc-cccc-eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec--CCc--eee
Q 010784 130 SIQNIKIDNFLSE-SYYR-ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW--KGS--CQR 200 (501)
Q Consensus 130 ~d~~i~vw~~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd--~~~--~~~ 200 (501)
.++.+.+|+++.. .+.. .....+...+..++|+| +|+ |++++. ++.|.+|+ .+. .+.
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-------------dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-------------KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-------------TCE-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-------------CCe-EEEEEecCCCceEEEEEecCCcEEEee
Confidence 4567778876542 1222 23345567788899999 788 554443 68999998 333 334
Q ss_pred eccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeeccC---------CCCceeEEEEeecC
Q 010784 201 CFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG---------HEKPIKLMSVAGHK 270 (501)
Q Consensus 201 ~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~~~~~ 270 (501)
.+..+...+..++|+ +++++|++++ .++.|.+|++..... ...+..+.. +...+.+++|+| +
T Consensus 80 ~~~~~~~~p~~~a~s----pdg~~l~~~~~~~~~v~v~~~~~~g~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d 151 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVD----EARQLVYSANYHKGTAEVMKIAADGA---LTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D 151 (347)
T ss_dssp EEEEESCCCSEEEEE----TTTTEEEEEETTTTEEEEEEECTTSC---EEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred eeecCCCCCEEEEEC----CCCCEEEEEeCCCCEEEEEEeCCCCC---eeecceeecCCCCCCccccCCCceEEEECC-C
Confidence 445577788999997 8999888887 679999999964322 111222211 123478899998 5
Q ss_pred CeEEEEEeCCCeEEEEECC-CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcE
Q 010784 271 SFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPIL 348 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v 348 (501)
++++++...++.|.+|++. +++... ...+.. ....+
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~------------------------------------------~~~~~~~~g~~p 189 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSE------------------------------------------QSVLTMEAGFGP 189 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEE------------------------------------------EEEEECCTTCCE
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEE------------------------------------------eeeEEcCCCCCC
Confidence 5577777778999999998 332110 011111 12356
Q ss_pred EEEEEcCCCcEEEEE-cCCc-EEEEecCC--CCCCCCCCCcccccCcc------cCeEEEEecCC-e-EEEEecCCCcEE
Q 010784 349 HSFSIMPSKSLICTG-GIGK-AMTWDIRR--SQDAVKPQPMAELDGHV------GSVTQLHMDPY-K-IVTGGRDDLRIN 416 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~-~~d~-i~iwd~~~--~~~~~~~~~~~~~~~h~------~~v~~l~~~~~-~-~l~~gs~dg~i~ 416 (501)
..++|+|+|++++++ ..++ |.+|++.. ++. ..+..+.... ..+..++|+|+ + +++++..++.|.
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF----TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE----EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce----EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 789999999966664 4556 99999875 221 1112222111 45889999999 5 556766789999
Q ss_pred EEeCCCc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 417 IWETDTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 417 iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+|++... +.+..+. .+...+..++|+|||++|++++. .++.|.+|++..
T Consensus 266 v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d~ 317 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARDL 317 (347)
T ss_dssp EEEECGGGCEEEEEEEE-----CSSSCCCEEEECTTSSEEEEEET-TTTEEEEEEECT
T ss_pred EEEECCCCcEEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEeC
Confidence 9999732 3344442 23445789999999999988875 468999997654
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.5e-20 Score=188.05 Aligned_cols=266 Identities=12% Similarity=0.031 Sum_probs=185.5
Q ss_pred CCceEEeeCCcEEEeecCC-eeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeC---
Q 010784 112 PHDHILLDNNDIFSTQGSS-IQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSC--- 186 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~-d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--- 186 (501)
+|.++++++||+.||+++. ++.++||++.++ +. ..+..|. ..|..++|+| + +++++++.
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~-~~lt~~~~~~~~~~~~sp-------------d-~~l~~~~~~~g 86 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ET-VKLNREPINSVLDPHYGV-------------G-RVILVRDVSKG 86 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EE-EECCSSCCSEECEECTTC-------------S-EEEEEEECSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCC-Cc-EeeecccccccccccCCC-------------C-eEEEEeccCCC
Confidence 4889999999999998887 999999998653 44 4455555 6899999998 7 77777765
Q ss_pred CCceEEec--C--CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 187 DHSIRLWW--K--GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 187 dg~i~vwd--~--~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+...++|. . ......+..+. .+...+|+| ++++..+++++.+ .+.+||+.+++. . .+..+.. .
T Consensus 87 ~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~--dg~~~~~~s~~~~-~~~l~d~~~g~~------~-~l~~~~~--~ 153 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVD--TGEAVVFTGATED-RVALYALDGGGL------R-ELARLPG--F 153 (582)
T ss_dssp SCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEE--CSSCEEEEEECSS-CEEEEEEETTEE------E-EEEEESS--C
T ss_pred CcceEEEEEeccCCCccccccCCC-CceeeeeCC--CCCeEEEEecCCC-CceEEEccCCcE------E-EeecCCC--c
Confidence 45566664 3 22222333222 334557762 2223345555444 555999988752 2 2222222 7
Q ss_pred EEEEeecCCeEEEEEeCC----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 263 LMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
+++|+| +++.+++++.+ +.|++||+.+++.
T Consensus 154 ~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~--------------------------------------------- 187 (582)
T 3o4h_A 154 GFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGL--------------------------------------------- 187 (582)
T ss_dssp EEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCC---------------------------------------------
T ss_pred eEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCc---------------------------------------------
Confidence 889998 78888887776 7788999877642
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEE--------ecCC-eEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLH--------MDPY-KIV 406 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~-~~l 406 (501)
..+..|.+.+.+++|+|||+.|+++..++ |++||+.+++. ..+.+|...+..++ |+|+ .++
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-------EDLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-------EECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-------EEccCCCcChhhhhhccccceeEcCCCcEE
Confidence 23445678889999999999999766443 99999987653 24556666666666 9999 899
Q ss_pred EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC-CceEEEeecc
Q 010784 407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-PGLLQFRDFS 470 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-~g~i~~w~~~ 470 (501)
++++.|+.+++|++ ++.+... ...+..++|+ +|+++++++.+. ...+++|+..
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~~~--------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVEAP--------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEET--TEEECCC--------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCcEEEEEE--CCeeccC--------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 98889999999999 6655432 3568899999 999998887531 1346666644
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.8e-19 Score=184.69 Aligned_cols=279 Identities=12% Similarity=0.039 Sum_probs=190.7
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.++.+++|+|++.++++. ++.+.+||+.++ +. ..+..+...+.+++|+| +|+.|+++ .|+.|
T Consensus 82 ~~v~~~~~spd~~~~~~~--~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~Sp-------------dG~~la~~-~~~~i 143 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFT--QGGLVGFDMLAR-KV-TYLFDTNEETASLDFSP-------------VGDRVAYV-RNHNL 143 (706)
T ss_dssp CCCEEEEETTTTEEEEEE--TTEEEEEETTTT-EE-EEEECCTTCCTTCEECT-------------TSSEEEEE-ETTEE
T ss_pred cCceeEEECCCCeEEEEE--CCEEEEEECCCC-ce-EEccCCcccccCCcCCC-------------CCCEEEEE-ECCeE
Confidence 569999999996555553 499999999874 33 34556777899999999 89999985 68999
Q ss_pred EEec--C-----CceeeeccCCCCc--------------eEEEEeeecCCCCCCEEEEee--------------------
Q 010784 191 RLWW--K-----GSCQRCFKGHNGP--------------VSTLSDKLLGDGSGKILASGG-------------------- 229 (501)
Q Consensus 191 ~vwd--~-----~~~~~~~~~h~~~--------------v~~l~~s~~~~~~~~~l~sg~-------------------- 229 (501)
++|| . ++.......+... +.++.|+ |+|++|++++
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S----pDg~~la~~~~d~~~~~~~~~~~~~~~~~~ 219 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS----PKGSCLAFYRMDQSMVKPTPIVDYHPLEAE 219 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC----TTSSEEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC----CCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 9999 4 5555444444433 4789997 8999999987
Q ss_pred -------------CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEEEEECCCC
Q 010784 230 -------------EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVRVWDTSTS 291 (501)
Q Consensus 230 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~vwd~~~~ 291 (501)
.+..|.+||+.++.. ..+.....|...+..++|+| +++.|++++.++ .|++||+.++
T Consensus 220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 220 SKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred eEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 446899999988652 01111225677899999998 777888877665 8999999988
Q ss_pred ccccceecccceecCCCceeeecCC--CeEEEEeC---CcEEEEEcC-CCceEeeeccCCCcEEE-EEEcCCCcEEEEEc
Q 010784 292 SAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASG---SSVVTIDLR-TMQKVMTPAICKPILHS-FSIMPSKSLICTGG 364 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~i~~~d~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~ 364 (501)
+...................+.+++ +..+++.+ +.+.+|++. +++.+..+..+...+.+ ++|+|+++.|+.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 295 RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 3222111100000001123455655 54444432 367788776 56667777777777877 79999998776554
Q ss_pred -CC----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCC---CcEEEEeCCCcc
Q 010784 365 -IG----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDD---LRINIWETDTGM 424 (501)
Q Consensus 365 -~d----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~d---g~i~iwd~~~~~ 424 (501)
.+ . |..||+.+++. ..+. |...+.+++|+|+ +.++ +++.+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~~-------~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGKT-------KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCCC-------EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCCc-------eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 32 3 66677766542 2333 5667899999999 5444 43333 569999998876
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.6e-20 Score=168.98 Aligned_cols=251 Identities=8% Similarity=-0.025 Sum_probs=177.3
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
.+..+++++.++.|.+|| +++.+..+..+...+ +++|+ ++++++++++. ++.|.+||+.++.. ....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s----~dg~~l~~~~~~~~~i~~~d~~~~~~-----~~~~ 78 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAIT----SDCSNVVVTSDFCQTLVQIETQLEPP-----KVVA 78 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEEC----SSSCEEEEEESTTCEEEEEECSSSSC-----EEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEc----CCCCEEEEEeCCCCeEEEEECCCCce-----eEEe
Confidence 345688888999999999 677777776666677 99997 88886666655 88999999988762 2555
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI 330 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (501)
+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+.
T Consensus 79 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~----------------------------------- 122 (331)
T 3u4y_A 79 IQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFIS----------------------------------- 122 (331)
T ss_dssp EEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEE-----------------------------------
T ss_pred cccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEE-----------------------------------
Confidence 566666665599998 677777555543 89999998764321
Q ss_pred EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-E
Q 010784 331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-I 405 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~ 405 (501)
.+. ......+++|+|+|++++++ . .+. |.+|++.......... ...+ .....+..++|+|+ + +
T Consensus 123 ---------~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 123 ---------TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp ---------EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEE
T ss_pred ---------EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEE
Confidence 122 23446899999999855544 3 467 9999998643320000 1112 23456789999999 4 6
Q ss_pred EEEecCCCcEEEEeCCCccc---ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc--------
Q 010784 406 VTGGRDDLRINIWETDTGML---ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC-------- 474 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~-------- 474 (501)
++++..++.|.+||+.+++. +..+.. ...+..++|+|||++|++++. .++.|.+||...+..
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGT------NNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEEC------SSCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccC------CCCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeeccccc
Confidence 77777899999999999888 666632 356788999999998877654 467899998654322
Q ss_pred ----------------------c-eeecCCCCceeeecccC
Q 010784 475 ----------------------P-VLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 475 ----------------------~-~~s~~~d~~~~~w~~~~ 492 (501)
. +++...++.+++|+++.
T Consensus 264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 264 GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 2 23556677889998764
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.9e-20 Score=192.32 Aligned_cols=323 Identities=10% Similarity=-0.024 Sum_probs=212.5
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCcCcEEEEeeC----
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRTENVLVTSSC---- 186 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---- 186 (501)
..++|+|+|.+++++ .++.|++||..++ +....+.+|.. .|.+++||| ||++|++++.
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~Sp-------------Dg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSP-------------DRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECT-------------TSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCC-cEEEEEccccccccceeeEEECC-------------CCCeEEEEecCcee
Confidence 477899999877766 4899999999985 55555655544 399999999 8999998876
Q ss_pred -----CCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 187 -----DHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 187 -----dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
++.|++|| .++.+ ..+ ...+..++|| |+|+.|+.+. ++.|++|++.++.. ......++
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~S----PDG~~la~~~-~~~i~~~~~~~g~~-----~~l~~~~~ 150 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWS----PVGSKLAYVY-QNNIYLKQRPGDPP-----FQITFNGR 150 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEEC----SSTTCEEEEE-TTEEEEESSTTSCC-----EECCCCCB
T ss_pred EEeecceEEEEEECCCCccccceec---CcccccceEC----CCCCEEEEEE-CCeEEEEeCCCCCc-----EEEecCCC
Confidence 78999999 44432 223 3568889997 8999999886 78999999988753 11111222
Q ss_pred CCc-----------------eeEEEEeecCCeEEEEEeCCC----------------------------------eEEEE
Q 010784 258 EKP-----------------IKLMSVAGHKSFLLVTISKDS----------------------------------KVRVW 286 (501)
Q Consensus 258 ~~~-----------------v~~l~~~~~~~~~l~s~s~dg----------------------------------~v~vw 286 (501)
... ...++|+| +++.|++++.|. .|++|
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 221 24799998 788888887552 78899
Q ss_pred ECCCCccccceecc--c-ceecCCCceeeecCCCeEEEEe--C-C----cEEEEE----cCCCceEeee----ccCCCcE
Q 010784 287 DTSTSSAVRSSCCV--G-MTSVPGVPVDMKCHESMLYIAS--G-S----SVVTID----LRTMQKVMTP----AICKPIL 348 (501)
Q Consensus 287 d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~--~-~----~i~~~d----~~~~~~~~~~----~~~~~~v 348 (501)
|+.+++........ . .......+..+.++++..+++. . . .|.+|| +.+++....+ ..|...+
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 99887542000100 0 0012334556677777655443 2 1 488899 8777766555 3566666
Q ss_pred E-----EEEEcCCCcEEEE--EcCCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC----CC
Q 010784 349 H-----SFSIMPSKSLICT--GGIGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD----DL 413 (501)
Q Consensus 349 ~-----~v~~~~~~~~l~~--~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~----dg 413 (501)
. .+.|+|||+.++. ...++ |.+||+..++. ..+..+...+..+.+... .+++++.. ++
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-------~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-------IQITSGKWEAINIFRVTQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-------EECSCSSSCEEEEEEECSSEEEEEESCGGGCTT
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-------EecccCceEEEEEEEEeCCEEEEEEecCCCCCc
Confidence 6 7899999985543 33333 77788776542 445555556777666644 66666644 58
Q ss_pred cEEEEeCCC--cc-cccccccCCCCCCCcceeeeEeeccccEEEEee-cCCCceEEEeeccCCc
Q 010784 414 RINIWETDT--GM-LANSLLCNYPEEADISTGCSAMAVSGCRIVTAS-YGEPGLLQFRDFSNAT 473 (501)
Q Consensus 414 ~i~iwd~~~--~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~g~i~~w~~~~~~ 473 (501)
..++|.+.. +. ....+.... .++...+..+.|+|||++++... ......+.+|++.+++
T Consensus 383 ~~~l~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 383 RRNIYRISIGSYPPSKKCVTCHL-RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEEECSSSSCCEEESSTTT-TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred eEEEEEEeCCCCCCCceeccCcc-CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 899998754 32 122331100 12455677899999998877543 2233468888876665
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4.9e-20 Score=170.97 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=186.8
Q ss_pred cEEEEeeCCCceEEec--CCceeeeccCCCC--ceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceee
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNG--PVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~--~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
+++++++.++.|.+|| +++.+..+..... .+..++|+ ++++.+ +++..++.|.+||+.+++. ...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~v~~~~~~~v~~~d~~~~~~------~~~ 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA----PGGRIAYATVNKSESLVKIDLVTGET------LGR 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC----TTSSEEEEEETTTTEEEEEETTTCCE------EEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc----CCCCEEEEEeCCCCeEEEEECCCCCe------Eee
Confidence 5799999999999999 6666666653221 47889997 788665 5566688999999988763 333
Q ss_pred ccC-C----CCceeEEEEeecCCeEEEEEe------------CCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784 254 LYG-H----EKPIKLMSVAGHKSFLLVTIS------------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE 316 (501)
Q Consensus 254 ~~~-~----~~~v~~l~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (501)
+.. + ...+..++|+| +++.+++++ .++.|.+||+.+++..... .....+..+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~~~~~~s~ 144 (337)
T 1pby_B 72 IDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF------EAPRQITMLAWAR 144 (337)
T ss_dssp EECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE------ECCSSCCCEEECT
T ss_pred EEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE------eCCCCcceeEECC
Confidence 331 1 22567889997 676777775 5799999999887654322 2233445555555
Q ss_pred Ce--EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-------------------------cEE
Q 010784 317 SM--LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-------------------------KAM 369 (501)
Q Consensus 317 ~~--~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------------------------~i~ 369 (501)
+. ++++ ++.+.+||+.+++....+..+... ..+.|+|++..++..+.+ .|.
T Consensus 145 dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 145 DGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp TSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 43 4444 679999999999887766654311 123789998866655432 247
Q ss_pred EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
+||+.+++.. ...+..+...+.+++|+|+ ++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|
T Consensus 223 ~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~ 289 (337)
T 1pby_B 223 TMDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVST 289 (337)
T ss_dssp EEETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECT
T ss_pred EEeCCCCCce-----EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECC
Confidence 8999886532 2334455667889999999 766665 78999999999988877742 23578899999
Q ss_pred cccEEEEeecCCCceEEEeeccCCcc
Q 010784 449 SGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+|++|++++ .++.|.+||+..+..
T Consensus 290 dg~~l~~~~--~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 290 DGSTVWLGG--ALGDLAAYDAETLEK 313 (337)
T ss_dssp TSCEEEEES--BSSEEEEEETTTCCE
T ss_pred CCCEEEEEc--CCCcEEEEECcCCcE
Confidence 999999987 569999999987764
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=3.7e-20 Score=190.38 Aligned_cols=282 Identities=9% Similarity=-0.032 Sum_probs=188.3
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEeeecCCCCCCEEEEee
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDKLLGDGSGKILASGG 229 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s~~~~~~~~~l~sg~ 229 (501)
.+.+++|+| +|+++++ +.||+|++|| +++....+..|.. .|.+++|+ |+|++|++++
T Consensus 18 ~~~~~~~sp-------------dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S----pDg~~l~~~~ 79 (723)
T 1xfd_A 18 HDPEAKWIS-------------DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS----PDREYALFSY 79 (723)
T ss_dssp CCCCCCBSS-------------SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC----TTSSEEEEEE
T ss_pred cccccEEcC-------------CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEEC----CCCCEEEEEe
Confidence 366778887 7887766 7899999999 6666666766665 49999997 8999999987
Q ss_pred CC---------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 230 ED---------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 230 ~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.+ +.|.+||+.++.. ..+.....|...+..++|+| +++.|++++. +.|++||+.+++........
T Consensus 80 ~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~ 153 (723)
T 1xfd_A 80 NVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG 153 (723)
T ss_dssp SCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCC
T ss_pred cCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCC
Confidence 64 7888999998752 11233344555688899998 7778888876 79999999987653321110
Q ss_pred cc-e---ec---------CCCceeeecCCCeEEE--Ee-C----------------------------------CcEEEE
Q 010784 301 GM-T---SV---------PGVPVDMKCHESMLYI--AS-G----------------------------------SSVVTI 330 (501)
Q Consensus 301 ~~-~---~~---------~~~~~~~~~~~~~~~~--~~-~----------------------------------~~i~~~ 330 (501)
.. . .. .+....+.+++++..+ +. . ..+.+|
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 00 0 00 0122456666654333 22 1 168899
Q ss_pred EcCCCceEeeeccC------CCcEEEEEEcCCCcEEEEEc----CCc-EEEEecCCCCCCCCCCCcccccC-cccCe---
Q 010784 331 DLRTMQKVMTPAIC------KPILHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSV--- 395 (501)
Q Consensus 331 d~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v--- 395 (501)
|+.+++....+..+ ...+.+++|+|||+++++.+ .+. |++||+.+++.. ..+.. +...+
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~------~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT------KKHEDESEAWLHRQ 307 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE------EEEEEECSSCCCCC
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce------EEEEeccCCEEecc
Confidence 99988765555543 56789999999999987764 234 999999887643 32222 23333
Q ss_pred -EEEEecCC-e-EEEE-ecCCC------cEEEEe-CCCccc--ccccccCCCCCCCccee-eeEeeccccEEEEeecCCC
Q 010784 396 -TQLHMDPY-K-IVTG-GRDDL------RINIWE-TDTGML--ANSLLCNYPEEADISTG-CSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 396 -~~l~~~~~-~-~l~~-gs~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~s~~~d~~ 461 (501)
..++|+|+ + +++. +..++ .|.+|| ..+++. ...+. .....+. .++|+|||+.|+..+. .+
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~-~~ 381 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLST-ED 381 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEES-SS
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-----cCCeEEEeeeEEcCCCCEEEEEEc-CC
Confidence 37899999 4 4443 55677 577777 344431 45552 1122333 4699999999987764 33
Q ss_pred --ceEEEeeccCC
Q 010784 462 --GLLQFRDFSNA 472 (501)
Q Consensus 462 --g~i~~w~~~~~ 472 (501)
+.+++|++...
T Consensus 382 ~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 382 LPRRRQLYSANTV 394 (723)
T ss_dssp CTTCCEEEEECSS
T ss_pred CCcceEEEEEeCC
Confidence 78999998754
No 152
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=9.1e-19 Score=162.81 Aligned_cols=274 Identities=9% Similarity=0.078 Sum_probs=177.0
Q ss_pred EecCCCCceEEeeCCcEEEeecCCe-eeEEEEecc--ccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSI-QNIKIDNFL--SES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d-~~i~vw~~~--~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
..+...+.+++|+|+|.++++++.+ +.+.+|++. ++. +.+..+..+. .+..++|+| ++++|+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-------------dg~~l~ 99 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-------------QGQFVF 99 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-------------TSSEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-------------CCCEEE
Confidence 4466679999999999988877765 999999987 431 2334444444 789999999 788776
Q ss_pred Eee-CCCceEEecC--C---ceeeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCcccccccee--e
Q 010784 183 TSS-CDHSIRLWWK--G---SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKA--T 253 (501)
Q Consensus 183 s~~-~dg~i~vwd~--~---~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~--~ 253 (501)
+++ .++.|.+||. + ..+..+.. ...+.+++|+ ++++++++++ .++.|.+||+.+... ..... .
T Consensus 100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s----~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~ 171 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS----PDNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAE 171 (343)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC----TTSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEE
T ss_pred EEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC----CCCCEEEEecCCCCEEEEEEecCCCc---eeeecccc
Confidence 655 4889999983 2 23333443 3458889997 8898888777 899999999987332 01111 2
Q ss_pred cc-CCCCceeEEEEeecCCeEE-EEEeCCCeEEEEECCC--CccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 254 LY-GHEKPIKLMSVAGHKSFLL-VTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 254 ~~-~~~~~v~~l~~~~~~~~~l-~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
.. .....+..++|+| +++++ +++..++.|.+||+.. ++.... .
T Consensus 172 ~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~-~------------------------------- 218 (343)
T 1ri6_A 172 VTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV-Q------------------------------- 218 (343)
T ss_dssp EECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE-E-------------------------------
T ss_pred cccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE-e-------------------------------
Confidence 22 2345778899998 55544 5555899999999964 221000 0
Q ss_pred EEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEE-EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 330 IDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICT-GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 330 ~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~-~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
....+. .....+..++|+|+++++++ +..++ |.+||+...... .+.+..+..+.. +..++|+|+
T Consensus 219 -------~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~-~~~~~~s~dg 288 (343)
T 1ri6_A 219 -------TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV--LSKEGFQPTETQ-PRGFNVDHSG 288 (343)
T ss_dssp -------EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC--EEEEEEEECSSS-CCCEEECTTS
T ss_pred -------eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc--eEEeeeecCCCc-cceEEECCCC
Confidence 000011 11345778999999987764 44666 999999832111 122344444433 889999999
Q ss_pred e-EEEEecCCCcEEEEeC--CCcc--cccccccCCCCCCCcceeeeEeecccc
Q 010784 404 K-IVTGGRDDLRINIWET--DTGM--LANSLLCNYPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 404 ~-~l~~gs~dg~i~iwd~--~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~ 451 (501)
+ +++++..++.|.+|++ .+++ .+..+.. .....+++|.++.+
T Consensus 289 ~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~------g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV------GQGPMWVVVNAHEG 335 (343)
T ss_dssp SEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC------SSSCCEEEEEEEC-
T ss_pred CEEEEecCCCCeEEEEEEcCCCceeeEcccccc------CCCCeeEEEEcccC
Confidence 5 5555447899999954 4553 3333321 23456777877654
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2.1e-18 Score=161.17 Aligned_cols=239 Identities=9% Similarity=0.018 Sum_probs=173.2
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-------CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-------DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
...+..++|+| +++++++++. ++.|.+|| +++.+..+.. ...+..++|+ ++++
T Consensus 40 ~~~~~~~~~s~-------------dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s----~dg~ 101 (353)
T 3vgz_A 40 GKGAYEMAYSQ-------------QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATIN----NTTQ 101 (353)
T ss_dssp ESSEEEEEEET-------------TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEE----TTTT
T ss_pred ccCccceEECC-------------CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEEC----CCCC
Confidence 34678899999 7887777764 56899999 6666666653 3456788887 7888
Q ss_pred EE-EEeeCCCcEEEEeccCCCccccccceeeccCCCC---------ceeEEEEeecCCeEEEEEe--CCCeEEEEECCCC
Q 010784 224 IL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK---------PIKLMSVAGHKSFLLVTIS--KDSKVRVWDTSTS 291 (501)
Q Consensus 224 ~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~v~~l~~~~~~~~~l~s~s--~dg~v~vwd~~~~ 291 (501)
++ +++..++.|.+||..+++. ...+..+.. .+.++.++| +++.+++++ .++.|.+||..++
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEV------KGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCE------EEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTT
T ss_pred EEEEEecCCCEEEEEeCCCCee------EEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCC
Confidence 55 4555679999999998763 444443322 268899998 555555544 4788999998876
Q ss_pred ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEE
Q 010784 292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMT 370 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~i 370 (501)
+.. ..+..+...+.+++|+|+++++++++.++ |.+
T Consensus 175 ~~~--------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 175 KLK--------------------------------------------TAIQNTGKMSTGLALDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp EEE--------------------------------------------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred ceE--------------------------------------------EEecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence 432 22222344567889999999999888777 999
Q ss_pred EecCCCCCCCCCCCccccc----CcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784 371 WDIRRSQDAVKPQPMAELD----GHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 371 wd~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
||..+++.. ..+. ++...+..++|+|+ .++++...++.|.+||..+++.+..+.... ...+
T Consensus 211 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~ 277 (353)
T 3vgz_A 211 IDTADNKIL------SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-------SLAV 277 (353)
T ss_dssp EETTTTEEE------EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-------CCCE
T ss_pred EECCCCeEE------EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-------CceE
Confidence 999987643 3332 24556888999998 466666667999999999999888875321 2568
Q ss_pred EeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 445 AMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+|+|+|+++++++. .++.|.+||...+..
T Consensus 278 ~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 278 LFNPARNEAYVTHR-QAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEETTTTEEEEEET-TTTEEEEEETTTTEE
T ss_pred EECCCCCEEEEEEC-CCCeEEEEECCCCeE
Confidence 99999997766654 579999999876553
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.2e-18 Score=162.47 Aligned_cols=273 Identities=8% Similarity=0.025 Sum_probs=180.7
Q ss_pred CCCCcCcEEEEeeCCCceEEec--CCceeeeccCCC-CceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccc
Q 010784 173 EPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 173 ~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
.+++++.++++++.+++|.+|| +++.+..+..+. ..+..++|+ ++++++ +++..++.|.+||+.+++.
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~~~v~~~~~~~i~~~d~~t~~~---- 77 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA----PDNRTAYVLNNHYGDIYGIDLDTCKN---- 77 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC----CCCCEEEEEeCCCCcEEEEeCCCCcE----
Confidence 3445889999999999999999 666666665443 257788986 788765 4556789999999988753
Q ss_pred cceeeccCC------CCceeEEEEeecCCeEEEEEeCC------------CeEEEEECCCCccccceecccceecCCCce
Q 010784 249 ALKATLYGH------EKPIKLMSVAGHKSFLLVTISKD------------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 249 ~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
...+..+ ...+..++|+| +++++++++.+ +.|.+||+.+++..... ........+.
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~ 151 (349)
T 1jmx_B 78 --TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---RTFPMPRQVY 151 (349)
T ss_dssp --EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---EEEECCSSCC
T ss_pred --EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee---eeccCCCccc
Confidence 3333322 22377889998 67778777755 89999999886432211 1122233455
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC------------------------cEEEEEEcCCCcEEEEEcCC
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP------------------------ILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------~v~~v~~~~~~~~l~~~~~d 366 (501)
++.++++..+++.+..+.+||+.+++.+..+..+.. ....+++++++........+
T Consensus 152 ~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 152 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp CEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 555665544555667899999999988776654320 34456666654322111111
Q ss_pred c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 367 K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 367 ~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
. +..+|..+++.. ...+..+...+..++++| + ++++++ ++.|.+||+.+++.+..+.. ...+.
T Consensus 232 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~ 298 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTH-----TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------DHTYY 298 (349)
T ss_dssp EEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCC
T ss_pred ceeEEEEeccCCcEE-----ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------CCCcc
Confidence 1 223555544321 112223455788999999 8 666665 88999999999988877742 23467
Q ss_pred eeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.++|+|+|++|++++ .++.|.+||....+.
T Consensus 299 ~~~~s~dg~~l~~~~--~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGG--TFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEECSSSSCEEEES--BSSEEEEEETTTTEE
T ss_pred ceEECCCCCEEEEec--CCCeEEEEeccccce
Confidence 899999999988876 559999999987654
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.9e-18 Score=161.17 Aligned_cols=282 Identities=10% Similarity=-0.013 Sum_probs=183.9
Q ss_pred eEEeeCCcEEEeecCCeeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEE
Q 010784 115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRL 192 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~v 192 (501)
.+++++++.++++++.++.|.+||..++ +....+..+. ..+..++|+| +++++ +++..++.|.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~-------------dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAP-------------DNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECT-------------TSSEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECC-------------CCCEEEEEeCCCCcEEE
Confidence 4578889999999999999999999885 6666665443 2578899999 77754 56667899999
Q ss_pred ec--CCceeeeccCC------CCceEEEEeeecCCCCCCEEEEeeCC------------CcEEEEeccCCCcccccccee
Q 010784 193 WW--KGSCQRCFKGH------NGPVSTLSDKLLGDGSGKILASGGED------------ATVRLWSLSSSGKRGQQALKA 252 (501)
Q Consensus 193 wd--~~~~~~~~~~h------~~~v~~l~~s~~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~ 252 (501)
|| +++.+..+..+ ...+.+++|+ ++|+++++++.+ +.|.+||+.+++. ...+.
T Consensus 70 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~ 142 (349)
T 1jmx_B 70 IDLDTCKNTFHANLSSVPGEVGRSMYSFAIS----PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVR 142 (349)
T ss_dssp EETTTTEEEEEEESCCSTTEEEECSSCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSE
T ss_pred EeCCCCcEEEEEEcccccccccccccceEEC----CCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceee
Confidence 99 56666555432 2337788997 899999998865 8999999987542 01122
Q ss_pred eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec-----C-------C-------Cceeee
Q 010784 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV-----P-------G-------VPVDMK 313 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~-------~-------~~~~~~ 313 (501)
.+. +...+.+++|+| +++ +++++. .|.+||+.+++............. . . .+..+.
T Consensus 143 ~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 143 TFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred ecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 333 334688899998 566 555543 499999998875443221100000 0 0 001111
Q ss_pred cCCCeEEE---EeCC-cEEEEEcCCCceE-eeeccCCCcEEEEEEcC-CCcEEEEEcCCcEEEEecCCCCCCCCCCCccc
Q 010784 314 CHESMLYI---ASGS-SVVTIDLRTMQKV-MTPAICKPILHSFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 314 ~~~~~~~~---~~~~-~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~ 387 (501)
+.++.... ..+. .+..+|..+++.. ..+..+...+.+++++| ++++++++ .+.|.+||+.+++.. ..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~------~~ 290 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI------KA 290 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE------EE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEE------EE
Confidence 11100000 0000 1223555554432 22233566788999999 99999988 444999999986543 34
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
+.. ...+.+++|+|+ +.+++++.++.|++||+.+++.+..+.
T Consensus 291 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 291 ANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 432 345779999999 545555688999999999999888874
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=6.1e-19 Score=176.41 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=167.1
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCceEEec-CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEee
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHSIRLWW-KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGG 229 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd-~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~ 229 (501)
..+|++++|+| ||+.|++++. ||+++||+ .+.....+..|. ..+..+.|+ |+ +++++++
T Consensus 21 ~~~~~~~~~~~-------------DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s----pd-~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVV-------------DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYG----VG-RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEE-------------TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTT----CS-EEEEEEE
T ss_pred ccchheeecCC-------------CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCC----CC-eEEEEec
Confidence 56799999999 8999999887 99999998 444445555555 689999997 66 7888776
Q ss_pred C---CCcEEEEeccC--CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 230 E---DATVRLWSLSS--SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 230 ~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
. +...++|.++. ... .. .+.... .+...+|+|+....+++.+.++.+.+||+.+++...
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~-----~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~--------- 146 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGE-----EQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE--------- 146 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTC-----CE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE---------
T ss_pred cCCCCcceEEEEEeccCCCc-----cc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE---------
Confidence 5 55667776654 322 12 222222 344668888544444454555556699987764211
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC----c-EEEEecCCCCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG----K-AMTWDIRRSQDA 379 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~ 379 (501)
+..+.. .+++|+|||++|++++.+ . |++||+.+++.
T Consensus 147 ------------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 147 ------------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp ------------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred ------------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 111122 688999999999987755 6 99999988653
Q ss_pred CCCCCcccccCcccCeEEEEecCC-eEEEEecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeE--------eec
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSA--------MAV 448 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~ 448 (501)
..+..|.+.+..++|+|+ +.|+++..++ .|++||+.+++.. .+ ..+...+..++ |+|
T Consensus 188 ------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 188 ------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-----ELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp ------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-----CCSCSHHHHHCCSEEEEEEECT
T ss_pred ------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-----cCCCcChhhhhhccccceeEcC
Confidence 466778888999999999 7777777888 8999999988877 55 34556677777 999
Q ss_pred cccEEEEeecCCCceEEEeec
Q 010784 449 SGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~~ 469 (501)
||.++++++ .++.+++|++
T Consensus 256 dg~~~~~~~--~~g~~~l~~~ 274 (582)
T 3o4h_A 256 DGRLAVVAR--REGRSAVFID 274 (582)
T ss_dssp TSCEEEEEE--ETTEEEEEET
T ss_pred CCcEEEEEE--cCCcEEEEEE
Confidence 998888888 5699999998
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=5.9e-18 Score=157.73 Aligned_cols=258 Identities=7% Similarity=0.063 Sum_probs=169.0
Q ss_pred EEecCCCCceEEeeCCcEEEeecC--CeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
.......+..++++|+|++++++. .++.|.+|++.++. +.+..+..|...+..++|+| +|++|+
T Consensus 35 ~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-------------dg~~l~ 101 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-------------ARQLVY 101 (347)
T ss_dssp EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-------------TTTEEE
T ss_pred eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-------------CCCEEE
Confidence 344556689999999999444443 27999999997642 24445556788899999999 888888
Q ss_pred Eee-CCCceEEec-C--Cc--eeeeccC---------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 183 TSS-CDHSIRLWW-K--GS--CQRCFKG---------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 183 s~~-~dg~i~vwd-~--~~--~~~~~~~---------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
+++ .++.|.+|+ . +. .+..+.. +...+.+++|+ ++|++++++..++.|.+|++.....
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s----pdg~l~v~~~~~~~v~~~~~~~~g~--- 174 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT----PDNRLAVIDLGSDKVYVYNVSDAGQ--- 174 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC----TTSCEEEEETTTTEEEEEEECTTSC---
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC----CCCcEEEEeCCCCEEEEEEECCCCc---
Confidence 877 689999998 2 22 2222221 12348889997 7888777777788999999983221
Q ss_pred ccceeeccC-CCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCC--CccccceecccceecCCCceeeecCCCeEEEEe
Q 010784 248 QALKATLYG-HEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323 (501)
Q Consensus 248 ~~~~~~~~~-~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
......+.. ....+..++|+| +++ +++++..++.|.+|++.. ++.... .
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~----~---------------------- 227 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQL----G---------------------- 227 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEE----E----------------------
T ss_pred EEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEe----e----------------------
Confidence 111222222 233577899998 565 555567789999999874 321000 0
Q ss_pred CCcEEEEEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEE-EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 324 GSSVVTIDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICT-GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 324 ~~~i~~~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~-~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
.+.... .....+..++|+|+|++|++ ...++ |.+|++..... ...+..+..+...+..+
T Consensus 228 -------------~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~---~~~~~~~~~~~~~~~~~ 291 (347)
T 3hfq_A 228 -------------IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH---LTLIQQISTEGDFPRDF 291 (347)
T ss_dssp -------------EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC---EEEEEEEECSSSCCCEE
T ss_pred -------------eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc---EEEeEEEecCCCCcCeE
Confidence 000000 01245889999999997754 44556 99999974221 12335555556678999
Q ss_pred EecCC-e-EEEEecCCCcEEEE--eCCCcccc
Q 010784 399 HMDPY-K-IVTGGRDDLRINIW--ETDTGMLA 426 (501)
Q Consensus 399 ~~~~~-~-~l~~gs~dg~i~iw--d~~~~~~~ 426 (501)
+|+|+ + +++++..++.|.+| |..++++.
T Consensus 292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99999 5 45555456899999 55566544
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=4.5e-17 Score=152.62 Aligned_cols=289 Identities=11% Similarity=0.088 Sum_probs=177.6
Q ss_pred eCCcEEEeec----CCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC----Cc
Q 010784 119 DNNDIFSTQG----SSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD----HS 189 (501)
Q Consensus 119 ~~~~~~~~~g----~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----g~ 189 (501)
.++..++..| +.++.|.+|.+... .+.......|...+..++|+| ++++|++++.+ +.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp-------------dg~~l~~~~~~~~~~~~ 76 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA-------------DGKFVYSVNEFSKDQAA 76 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT-------------TSSEEEEEECCSSTTCE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECC-------------CCCEEEEEEccCCCCCc
Confidence 3344455555 34678999977531 122221112677788899999 88999998876 79
Q ss_pred eEEec--C--Cce--eeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeecc-------
Q 010784 190 IRLWW--K--GSC--QRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLY------- 255 (501)
Q Consensus 190 i~vwd--~--~~~--~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~------- 255 (501)
|.+|+ . +.. +.....+......+++ ++++|++++ .++.|.+|++................
T Consensus 77 v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 150 (361)
T 3scy_A 77 VSAFAFDKEKGTLHLLNTQKTMGADPCYLTT------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE 150 (361)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCEEEEEE------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred EEEEEEeCCCCcEEEeeEeccCCCCcEEEEE------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence 99997 2 332 2333345556666664 566666665 68899999997644311111111111
Q ss_pred -CCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCcc------ccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 256 -GHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSA------VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 256 -~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
.+...+.+++|+| +++ ++++...++.|.+|++..... +...
T Consensus 151 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~------------------------------ 199 (361)
T 3scy_A 151 RQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK------------------------------ 199 (361)
T ss_dssp TCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE------------------------------
T ss_pred ccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec------------------------------
Confidence 1223457899998 565 445555689999999875431 0000
Q ss_pred EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784 328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K 404 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~ 404 (501)
+........+...+..++|+|+|+++++++ .++ |.+||+.+++... ...+.....+......++|+|+ +
T Consensus 200 -------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~ 271 (361)
T 3scy_A 200 -------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGK 271 (361)
T ss_dssp -------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSS
T ss_pred -------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCC
Confidence 000001112345578899999999877766 456 9999998654210 0111222333455789999999 6
Q ss_pred EE-EEecC-CCcEEEEeCC--Ccc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 405 IV-TGGRD-DLRINIWETD--TGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 405 ~l-~~gs~-dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++ ++... ++.|.+|++. +++ .+..+. . ...+..++|+|||++|++++. .++.|.+|++...
T Consensus 272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-----~-g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~ 338 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQL-----T-GIHPRNFIITPNGKYLLVACR-DTNVIQIFERDQA 338 (361)
T ss_dssp EEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-----C-SSCCCEEEECTTSCEEEEEET-TTTEEEEEEECTT
T ss_pred EEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-----C-CCCCceEEECCCCCEEEEEEC-CCCCEEEEEEECC
Confidence 55 55544 5899999996 344 333332 1 345778999999999998875 4689999877643
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=3.5e-18 Score=161.87 Aligned_cols=284 Identities=6% Similarity=-0.063 Sum_probs=182.9
Q ss_pred eEEeeCCcEEEeecCC-ee--eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 115 HILLDNNDIFSTQGSS-IQ--NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~-d~--~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
..+|+|||++++.++. ++ .+.+||+.++ +......+|...+..+.|+| +|+.|+.++.++.|+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~l~ 105 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSP-------------DDDALFYVKDGRNLM 105 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECT-------------TSSEEEEEETTTEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcC-------------CCCEEEEEeCCCeEE
Confidence 3789999999988776 66 4777788774 66666667777776788999 899999999999999
Q ss_pred Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE----------------------eeCCCcEEEEeccCCCcccc
Q 010784 192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS----------------------GGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s----------------------g~~dg~i~iwd~~~~~~~~~ 247 (501)
+|| +++....+..+...+....|.. ++++.+++. ...++.|.+||+.+++
T Consensus 106 ~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---- 179 (388)
T 3pe7_A 106 RVDLATLEENVVYQVPAEWVGYGTWVA--NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---- 179 (388)
T ss_dssp EEETTTCCEEEEEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----
T ss_pred EEECCCCcceeeeechhhcccccceeE--CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----
Confidence 999 5555555555555554444421 378888774 2345789999998875
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
...+..+...+..+.|+|.+++.|+.++.+ ..|.++|...++.
T Consensus 180 ---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------------------- 228 (388)
T 3pe7_A 180 ---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---------------------------- 228 (388)
T ss_dssp ---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----------------------------
T ss_pred ---eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----------------------------
Confidence 344445667788999997346666666543 2566666654421
Q ss_pred EeCCcEEEEEcCCCceEeeeccCC--CcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784 322 ASGSSVVTIDLRTMQKVMTPAICK--PILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQDAVKPQPMAELDGHVG 393 (501)
Q Consensus 322 ~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~~h~~ 393 (501)
..+..+. ..+..+.|+|||+.|+..+. +. |++||+.+++.. .+..+.++..
T Consensus 229 -----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~~~~~ 287 (388)
T 3pe7_A 229 -----------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----QLTSMPACSH 287 (388)
T ss_dssp -----------------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----EEEEECCEEE
T ss_pred -----------------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----EEEcCCCcee
Confidence 1111222 24778899999997765442 23 999999987631 2233333111
Q ss_pred C---eEEEEecCC-eEEE-Ee--------cCCCcEEEEeCCCcccccccccCCC------CCCCcceeeeEeeccccEEE
Q 010784 394 S---VTQLHMDPY-KIVT-GG--------RDDLRINIWETDTGMLANSLLCNYP------EEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 394 ~---v~~l~~~~~-~~l~-~g--------s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~ 454 (501)
. ...+.|+|+ +.++ +. ..+..|++||+.+++.. .+..+.. ......+..++|+|||+.|+
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEE
Confidence 1 112368888 4444 22 45678999999887653 3321110 00011467889999999988
Q ss_pred EeecCCCceEEEeeccCC
Q 010784 455 TASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 455 s~~~d~~g~i~~w~~~~~ 472 (501)
.++. .+|...+|.+.-.
T Consensus 367 ~~s~-~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 367 FTSD-VHGKPALYLATLP 383 (388)
T ss_dssp EEEC-TTSSCEEEEEECC
T ss_pred EEec-CCCceeEEEEECC
Confidence 8764 4677777766543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.9e-16 Score=148.41 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=169.2
Q ss_pred cCCCCceEEeeCCcEEEeecCCe----eeEEEEecccc-c--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSI----QNIKIDNFLSE-S--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d----~~i~vw~~~~~-~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
+...+..++++|+|.++++++.+ +.+.+|++... . +.+.....+......+++ . +++|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d--------------g~~l 112 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N--------------GKNI 112 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C--------------SSEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C--------------CCEE
Confidence 56678999999999988888775 89999998752 1 233334445556667776 2 4555
Q ss_pred EEee-CCCceEEec--CCceeeec------c--------CCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCC
Q 010784 182 VTSS-CDHSIRLWW--KGSCQRCF------K--------GHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSG 243 (501)
Q Consensus 182 ~s~~-~dg~i~vwd--~~~~~~~~------~--------~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~ 243 (501)
++++ .++.|.+|+ ....+..+ . .+...+.+++|+ |+|+++++++ .++.|.+|+++...
T Consensus 113 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 113 VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT----PDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTC
T ss_pred EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC----CCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 5554 688999998 22222111 1 123345889997 8998666555 57899999988643
Q ss_pred c----c-cccc--ceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784 244 K----R-GQQA--LKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH 315 (501)
Q Consensus 244 ~----~-~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (501)
. . .... .......+......++|+| +++++++++ .++.|.+||+.+++....
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~------------------- 248 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEI------------------- 248 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEE-------------------
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEe-------------------
Confidence 1 0 0000 0111223445678899998 666666655 689999999886532110
Q ss_pred CCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC--c-EEEEecCC--CCCCCCCCCcccccC
Q 010784 316 ESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG--K-AMTWDIRR--SQDAVKPQPMAELDG 390 (501)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d--~-i~iwd~~~--~~~~~~~~~~~~~~~ 390 (501)
..+.....+......++|+|+|++|+++..+ + |.+|++.. ++. ..+..+..
T Consensus 249 --------------------~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~----~~~~~~~~ 304 (361)
T 3scy_A 249 --------------------QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL----TKVGYQLT 304 (361)
T ss_dssp --------------------EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE----EEEEEEEC
T ss_pred --------------------EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE----EEeeEecC
Confidence 0011112233456899999999988766643 5 99999963 221 12233333
Q ss_pred cccCeEEEEecCC-e-EEEEecCCCcEEEEeC--CCcccccccccCCCCCCCcceeeeEee
Q 010784 391 HVGSVTQLHMDPY-K-IVTGGRDDLRINIWET--DTGMLANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 391 h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
...+..++|+|+ + +++++..++.|.+|++ .+++...... ..+...+.++.|.
T Consensus 305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~----~~~~~~p~~v~~~ 360 (361)
T 3scy_A 305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK----DIKVDKPVCLKFV 360 (361)
T ss_dssp -SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC----CEECSSEEEEEEE
T ss_pred -CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce----eeeCCCCeEEEEc
Confidence 456889999999 5 4445447899999654 5666544331 1223457777775
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=1.8e-17 Score=170.31 Aligned_cols=312 Identities=10% Similarity=-0.048 Sum_probs=193.1
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcce-----eEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARI-----TCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V-----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
..++.|+++|.+++++ |+.|++||+.++ +....+.+|.... ..++||| ||++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sp-------------dg~~l~~~~~~ 82 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISP-------------DGQFILLEYNY 82 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECT-------------TSSEEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCC-ceEEEEechhhhhhcccccceEECC-------------CCCEEEEEECC
Confidence 5689999999999997 899999999986 5566677776432 3467788 89999999876
Q ss_pred ---------CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 188 ---------HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 188 ---------g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+.+.+|| .+.....+..|.+.+...+|| |+|+.|+.+. |+.|++|++.++.. ...+..++
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S----PdG~~la~~~-~~~i~~~~~~~~~~-----~~lt~~g~ 152 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWS----PVGHKLAYVW-NNDIYVKIEPNLPS-----YRITWTGK 152 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEEC----SSTTCEEEEE-TTEEEEESSTTSCC-----EECCSCCB
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEEC----CCCCEEEEEE-CCeEEEEECCCCce-----EEEcCCCC
Confidence 4556999 444455677788889999998 8999999884 68999999988753 11122233
Q ss_pred CCce-----------------eEEEEeecCCeEEEEEeCCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 258 EKPI-----------------KLMSVAGHKSFLLVTISKDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 258 ~~~v-----------------~~l~~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
...+ ..+.|+| +++.|+.++.|. .+.+|++....... ........+.+...+.
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~--------~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDES--------LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTT--------CSSCEEEEEECCBTTS
T ss_pred ccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCC--------CCCCcceeecCCCCcC
Confidence 2222 3588998 777787776554 48888764321100 0000001111100000
Q ss_pred EEEeCCcEEEEEcCC---Cc--eEeeec------cCCCcEEEEEEcCCCcEEEEEc----CCc-EEEEecCCCC----CC
Q 010784 320 YIASGSSVVTIDLRT---MQ--KVMTPA------ICKPILHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQ----DA 379 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~---~~--~~~~~~------~~~~~v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~----~~ 379 (501)
. .....+.+||+.+ ++ ....+. +|...+..++|+|||++++... .+. |++||+.+++ +.
T Consensus 224 ~-~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 224 V-NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp C-CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred c-CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 0 0001689999998 73 222333 3777899999999999766543 234 9999999876 21
Q ss_pred CCCCCcccc--cCcccCeE-----EEEecCC-eEEE-Eec-CCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEee
Q 010784 380 VKPQPMAEL--DGHVGSVT-----QLHMDPY-KIVT-GGR-DDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 380 ~~~~~~~~~--~~h~~~v~-----~l~~~~~-~~l~-~gs-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
.+..+ .+|...|. ...|+|+ +.++ ..+ .+| .|++||+.+++..... .+ ...+..+. .
T Consensus 303 ----~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-----~g-~~~v~~~~-~ 371 (740)
T 4a5s_A 303 ----VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT-----KG-TWEVIGIE-A 371 (740)
T ss_dssp ----GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC-----CS-SSCEEEEE-E
T ss_pred ----EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc-----cC-CEEEEEEE-E
Confidence 11222 44555554 7889999 5433 333 344 5888888766554333 11 23344432 2
Q ss_pred ccccEEEEeec---CCCceEEEeeccC
Q 010784 448 VSGCRIVTASY---GEPGLLQFRDFSN 471 (501)
Q Consensus 448 ~~g~~l~s~~~---d~~g~i~~w~~~~ 471 (501)
+|++.|+..+. +..+...+|.+..
T Consensus 372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 372 LTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred EeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 44665554432 1234556665543
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=1.6e-16 Score=161.52 Aligned_cols=284 Identities=10% Similarity=-0.055 Sum_probs=185.3
Q ss_pred cCCCCceEEeeCCcEEEeec--CCeeeEEEEecccccccceecccCCccee---------EEEee--ccCcCcccccCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQG--SSIQNIKIDNFLSESYYRATLSDHKARIT---------CMRLF--PLHETSLFRSEPQ 175 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g--~~d~~i~vw~~~~~~~~~~~~~~h~~~V~---------~~~~~--~~~~~~~~~~~~~ 175 (501)
+...+..+++++++.+++.+ +.++...||....+ .....+..|...+. ...|+ |
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP------------ 88 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRP------------ 88 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCS------------
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeec------------
Confidence 34568899999999999988 77888999986543 44566777776666 66666 6
Q ss_pred CcCcE-EEEeeC-CCceEEec-C--C-ceeeeccC-----CCCceEEEEeeecCCCCCCEEEEeeCC----------CcE
Q 010784 176 RTENV-LVTSSC-DHSIRLWW-K--G-SCQRCFKG-----HNGPVSTLSDKLLGDGSGKILASGGED----------ATV 234 (501)
Q Consensus 176 ~~~~~-l~s~~~-dg~i~vwd-~--~-~~~~~~~~-----h~~~v~~l~~s~~~~~~~~~l~sg~~d----------g~i 234 (501)
||+. |+.++. +..|.+++ . + .....+.. |...+.+++|+ ++|+.|++++.+ ..|
T Consensus 89 -Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s----pDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 89 -AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL----PERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp -SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE----TTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred -CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC----CCCCEEEEEEecccCCCCCCceeEE
Confidence 7887 665543 56676777 4 3 55666665 67788999998 899999998877 589
Q ss_pred EEEeccC------CCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCC--------eEEEEECC-CCcccccee
Q 010784 235 RLWSLSS------SGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDS--------KVRVWDTS-TSSAVRSSC 298 (501)
Q Consensus 235 ~iwd~~~------~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg--------~v~vwd~~-~~~~~~~~~ 298 (501)
.+||+.+ +. ...+. .+...+..++|+| +++.|+.++.++ .|++||+. +++..
T Consensus 164 ~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---- 231 (662)
T 3azo_A 164 AAVPLDGSAAADRSA-------VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---- 231 (662)
T ss_dssp EEEETTSTTTTCGGG-------SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE----
T ss_pred EEEECCCCccccCCc-------eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc----
Confidence 9999987 43 33444 5566788889998 777888777543 57777766 33100
Q ss_pred cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---EEEEecCC
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK---AMTWDIRR 375 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~ 375 (501)
+.......+...+..+.|+|||++++++..++ |.+||+.+
T Consensus 232 -------------------------------------~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 232 -------------------------------------DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp -------------------------------------EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred -------------------------------------ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 11122233467789999999999888777654 55666545
Q ss_pred CCCCCCCCCcccccCcccC--------eEEEEecCC-eEEEEecCCCcEEEE--eCCCcccccccccCCCCCCCcceeee
Q 010784 376 SQDAVKPQPMAELDGHVGS--------VTQLHMDPY-KIVTGGRDDLRINIW--ETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~--------v~~l~~~~~-~~l~~gs~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
++.. .....+... +..++++|+ +++++++. +.++|| |+.+++ +..+. .+...+..+
T Consensus 275 ~~~~------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-----~~~~~~~~~ 341 (662)
T 3azo_A 275 GAAT------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-----GPWTEWAAT 341 (662)
T ss_dssp CCEE------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-----SSCCEEEEE
T ss_pred Ccee------ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-----CCCCeEEEE
Confidence 4321 111222221 567889888 88888877 999999 555554 55562 334556655
Q ss_pred EeeccccE--EEEeecCCCceEEEeeccCCc
Q 010784 445 AMAVSGCR--IVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 445 ~~s~~g~~--l~s~~~d~~g~i~~w~~~~~~ 473 (501)
++++++. +++++.+....|+.+++..+.
T Consensus 342 -~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 342 -LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp -EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 1445543 334442212345555554444
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=3.9e-17 Score=153.13 Aligned_cols=271 Identities=10% Similarity=0.041 Sum_probs=168.5
Q ss_pred eeEEEEecc--cccccc--eec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeecc
Q 010784 132 QNIKIDNFL--SESYYR--ATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFK 203 (501)
Q Consensus 132 ~~i~vw~~~--~~~~~~--~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~ 203 (501)
+.|.+|++. ++ ++. ... .++...+..++|+| ++++|++++.+ .|.+|+ .++......
T Consensus 14 ~~i~~~~~d~~~g-~l~~~~~~~~~~~~~~~~~a~sp-------------dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 14 GAIFTVQFDDEKL-TCKLIKRTEIPQDEPISWMTFDH-------------ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp CEEEEEEEETTTT-EEEEEEEEECCTTCCCSEEEECT-------------TSSEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEECCCC-CEEEeeEEccCCCCCCcEEEECC-------------CCCEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 457776653 32 221 111 12345688899999 88999998887 999998 344433222
Q ss_pred C-CCCceEEEEeeecCCCCCCE--EEEee-------------CCCcEEEEeccCCCccccccceeecc----CCCCceeE
Q 010784 204 G-HNGPVSTLSDKLLGDGSGKI--LASGG-------------EDATVRLWSLSSSGKRGQQALKATLY----GHEKPIKL 263 (501)
Q Consensus 204 ~-h~~~v~~l~~s~~~~~~~~~--l~sg~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~ 263 (501)
. ..+...+++|+ ++|++ +++++ .+|.+.+|++..... ....+. .+...+.+
T Consensus 79 ~~~~g~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~ 149 (365)
T 1jof_A 79 HPIGGHPRANDAD----TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK-----LEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp EECCSSGGGGCTT----SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC-----EEEEEEEEECCTTCCEEE
T ss_pred eecCCCCccEEEC----CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc-----CcceEeeEEeCCCCcceE
Confidence 1 01234557775 88884 55653 689999999975322 122221 24567889
Q ss_pred EEEeecCCeEEEEEe-CCCeEEEEECC-CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTIS-KDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s-~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
++|+| ++++++++. .++.|++||+. +++... +..+
T Consensus 150 ~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~------------------------------------------~~~~ 186 (365)
T 1jof_A 150 MVFDP-TETYLYSADLTANKLWTHRKLASGEVEL------------------------------------------VGSV 186 (365)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTSCEEE------------------------------------------EEEE
T ss_pred EEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEE------------------------------------------eeeE
Confidence 99998 666666655 46899999997 553210 1111
Q ss_pred c--cCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecC--CCCCCCCCCCcccc----cCccc------CeEEEE-ecCC-
Q 010784 342 A--ICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIR--RSQDAVKPQPMAEL----DGHVG------SVTQLH-MDPY- 403 (501)
Q Consensus 342 ~--~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~--~~~~~~~~~~~~~~----~~h~~------~v~~l~-~~~~- 403 (501)
. .|...+..++|+|+|+++++++. ++ |.+|++. +++.......+..+ .+|.. .+..++ |+|+
T Consensus 187 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence 1 23456889999999998887764 55 9999875 33311000001122 12232 588999 9999
Q ss_pred eEEEEecC-CC-----cEEEEeCC-CcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceEEEeeccCC
Q 010784 404 KIVTGGRD-DL-----RINIWETD-TGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 404 ~~l~~gs~-dg-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+++++++. ++ .|.+|++. +++........ ..+......++|+| ||++|++++. .++.|.+|++...
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~~dg~~l~v~~~-~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCCcCCCEEEEEEc-CCCeEEEEEEchh
Confidence 65544333 23 89999996 56543311000 11234566789999 8999999874 3589999999876
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=171.86 Aligned_cols=274 Identities=11% Similarity=0.017 Sum_probs=179.1
Q ss_pred EEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEeeecCCCCCCEEEEeeC--
Q 010784 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDKLLGDGSGKILASGGE-- 230 (501)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s~~~~~~~~~l~sg~~-- 230 (501)
+++|+| ++.+++++ .|++|++|| .++....+..|.. .+.+++|| |+|++|++++.
T Consensus 20 ~~~~s~-------------dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S----pDg~~la~~~~~~ 81 (719)
T 1z68_A 20 FPNWIS-------------GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS----PDRQFVYLESDYS 81 (719)
T ss_dssp CCEESS-------------SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC----TTSSEEEEEEEEE
T ss_pred ccEECC-------------CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC----CCCCeEEEEecCc
Confidence 678888 78655554 699999999 5555555554433 38999997 89999998876
Q ss_pred -------CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc-
Q 010784 231 -------DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM- 302 (501)
Q Consensus 231 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~- 302 (501)
++.|++||+.+++... ...+ ...+..++|+| +++.|+++. ++.|++||+.+++..........
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~~~~----~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGEFVR----GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTEECC----SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT
T ss_pred eeEEeecceEEEEEECCCCcccc----ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC
Confidence 7899999998875200 0122 24688899998 777888775 78999999988765321110000
Q ss_pred --e-ec---------CCCceeeecCCCeEEEE--eCC-----------------------------------cEEEEEcC
Q 010784 303 --T-SV---------PGVPVDMKCHESMLYIA--SGS-----------------------------------SVVTIDLR 333 (501)
Q Consensus 303 --~-~~---------~~~~~~~~~~~~~~~~~--~~~-----------------------------------~i~~~d~~ 333 (501)
. .. .+....+.+++++..++ +.. .+.+||+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 0 00 01123566666643333 211 67899998
Q ss_pred CCceE--------eeeccCCCcEEEEEEcCCCcEEEEEc--CC--c-EEEEe----cCCCCCCCCCCCcccc----cCcc
Q 010784 334 TMQKV--------MTPAICKPILHSFSIMPSKSLICTGG--IG--K-AMTWD----IRRSQDAVKPQPMAEL----DGHV 392 (501)
Q Consensus 334 ~~~~~--------~~~~~~~~~v~~v~~~~~~~~l~~~~--~d--~-i~iwd----~~~~~~~~~~~~~~~~----~~h~ 392 (501)
+++.. ..+..|...+.+++|+||++++++.. .+ . |.+|| ..+++.. ..+ .+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------~~~~~~~~~~~ 306 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------KTQEHIEESRT 306 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC------GGGEEEEECSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE------EEEecccccCC
Confidence 87752 22345788899999999998877744 22 3 88899 7766543 334 3666
Q ss_pred cCeE-----EEEecCC-e-EEE-EecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC---
Q 010784 393 GSVT-----QLHMDPY-K-IVT-GGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG--- 459 (501)
Q Consensus 393 ~~v~-----~l~~~~~-~-~l~-~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--- 459 (501)
..+. .+.|+|+ + ++. ++..+| .|.+||+.+++ ...+. .+...+..+.++ +++.|+..+.+
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt-----~~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT-----SGKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS-----CSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc-----cCceEEEEEEEE-eCCEEEEEEecCCC
Confidence 6676 7899999 4 333 444555 57777877665 34442 234456777777 88777766631
Q ss_pred CCceEEEeeccC
Q 010784 460 EPGLLQFRDFSN 471 (501)
Q Consensus 460 ~~g~i~~w~~~~ 471 (501)
.++.+++|.+..
T Consensus 380 ~~~~~~l~~~~~ 391 (719)
T 1z68_A 380 YPGRRNIYRISI 391 (719)
T ss_dssp CTTCBEEEEEEC
T ss_pred CCceEEEEEEeC
Confidence 147888888764
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.9e-16 Score=147.64 Aligned_cols=280 Identities=10% Similarity=0.069 Sum_probs=184.7
Q ss_pred CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCc
Q 010784 130 SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGS 197 (501)
Q Consensus 130 ~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~ 197 (501)
.|+.+.+||..++ +.+..+..+..+ .++|+| +++++++++ .+++|.+|| +.+
T Consensus 29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~sp-------------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSN-------------DGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGCEEEEEETTTC-CEEEEEECCEEE--EEEECT-------------TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred ccCeEEEEECCCC-eEEEEecCCCCC--ceEECC-------------CCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 4789999999885 667777776665 899999 889888876 367899999 556
Q ss_pred eeeeccC------CCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceee-ccCCCCceeEEEEee
Q 010784 198 CQRCFKG------HNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKAT-LYGHEKPIKLMSVAG 268 (501)
Q Consensus 198 ~~~~~~~------h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~ 268 (501)
.+..+.. +......++|+ ++|++|+++.. ++.|.+||+.+++ .+.. +.. .. ...+.+.|
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~s----pdg~~l~v~n~~~~~~v~v~d~~~~~------~~~~~i~~-~~-~~~v~~~p 160 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQT----TDGKFIVLQNASPATSIGIVDVAKGD------YVEDVTAA-AG-CWSVIPQP 160 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEEC----TTSSEEEEEEESSSEEEEEEETTTTE------EEEEEGGG-TT-EEEEEECT
T ss_pred EEEEEEcCccccccCCCcceEEEC----CCCCEEEEECCCCCCeEEEEECCCCc------EEEEEecC-CC-cceeEEcC
Confidence 6665542 23445678886 89999998874 5799999999875 3444 432 22 12245666
Q ss_pred cCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceee--ecCCCeEEEEe-CCcEEEEEcCCCceE--eeec
Q 010784 269 HKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDM--KCHESMLYIAS-GSSVVTIDLRTMQKV--MTPA 342 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~i~~~d~~~~~~~--~~~~ 342 (501)
.+...+++.+.||.+.+|+... ++................+..+ ...+...++.+ ++.+.++|+...... ..+.
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 5557888899999999999865 4332111100111111111111 22233333333 457899998654321 1111
Q ss_pred c------CC----CcEEEEEEcCCCcEEEEEcC-----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784 343 I------CK----PILHSFSIMPSKSLICTGGI-----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM 400 (501)
Q Consensus 343 ~------~~----~~v~~v~~~~~~~~l~~~~~-----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 400 (501)
. +. .....++++|++..++++.. .. |.+||+.+.+.+ .++..+. +.+++|
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v------~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV------ARIPGRD--ALSMTI 312 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE------EEEECTT--CCEEEE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE------EEEecCC--eeEEEE
Confidence 0 01 11112689999777666532 34 999999987654 7777665 999999
Q ss_pred cCC-eEEEEecCCCcEEEEeCCCc--ccccccccCCCCCCCcceeeeEeecccc
Q 010784 401 DPY-KIVTGGRDDLRINIWETDTG--MLANSLLCNYPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 401 ~~~-~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 451 (501)
+|+ +++++++. +.|.+||..++ +.+.++ .........++++|+|+
T Consensus 313 spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-----~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 313 DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI-----EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTTTEEEEECS-SCEEEEECSSSSCEEEEEE-----TTSCSSEEEEEECCCSC
T ss_pred CCCCCEEEEeCC-CeEEEEECCCCcceeeEEe-----ccCCCCcEEEEecCCCC
Confidence 999 66666555 99999999999 888886 23345667899999986
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=1.1e-15 Score=141.01 Aligned_cols=252 Identities=10% Similarity=0.006 Sum_probs=175.4
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC------------------------CceEEec--CCceeeecc-CC
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD------------------------HSIRLWW--KGSCQRCFK-GH 205 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------------------------g~i~vwd--~~~~~~~~~-~h 205 (501)
-+.+.+++++| +|+++++...+ ++|.+|| +++.+..+. ++
T Consensus 23 l~~v~~va~d~-------------~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 89 (329)
T 3fvz_A 23 PGQVSGVALDS-------------KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL 89 (329)
T ss_dssp CSCEEEEEECT-------------TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT
T ss_pred cCCceEEEECC-------------CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc
Confidence 46799999998 78999888877 4799999 466665553 44
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec---------cCCCCceeEEEEeecCCeEEEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL---------YGHEKPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~l~~~~~~~~~l~s 276 (501)
......+++. ++|+++++...++.|++||...... .+..+ ..+-.....++++|.++.++++
T Consensus 90 ~~~p~gia~d----~~g~l~v~d~~~~~v~~~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 90 FYLPHGLSID----TDGNYWVTDVALHQVFKLDPHSKEG-----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp CSSEEEEEEC----TTSCEEEEETTTTEEEEECTTCSSC-----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred cCCceEEEEC----CCCCEEEEECCCCEEEEEeCCCCeE-----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence 5578899995 8899888888899999999875421 12322 2344568899999756778888
Q ss_pred Ee-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784 277 IS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP 355 (501)
Q Consensus 277 ~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~ 355 (501)
.+ .++.|++||. +++.+...... + .+. ....++-.....++++|
T Consensus 161 d~~~~~~I~~~~~-~g~~~~~~~~~------g--------------------------~~~--~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 161 DGYCNSRIVQFSP-SGKFVTQWGEE------S--------------------------SGS--SPRPGQFSVPHSLALVP 205 (329)
T ss_dssp ECSSCCEEEEECT-TSCEEEEECEE------C--------------------------CSS--SCCTTEESCEEEEEEET
T ss_pred eCCCCCeEEEEcC-CCCEEEEeccC------C--------------------------CCC--CCCCcccCCCcEEEEEC
Confidence 76 6899999994 44321111000 0 000 00001123478999999
Q ss_pred C-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCCeEE-------EEecCCCcEEEEeCCCcc
Q 010784 356 S-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPYKIV-------TGGRDDLRINIWETDTGM 424 (501)
Q Consensus 356 ~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~l-------~~gs~dg~i~iwd~~~~~ 424 (501)
+ +.++++...++ |++||..+++.+ ..+ ..+...+..++++|..++ ++.+.+..|++|+..+++
T Consensus 206 ~~g~l~v~d~~~~~I~~~~~~~G~~~------~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 206 HLDQLCVADRENGRIQCFKTDTKEFV------REIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEE------EEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEE------EEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 8 77777777777 999999876543 444 345667889999995222 223345589999999999
Q ss_pred cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
.+..+... ..+......++++|+|.++++.. .++.|++|+...
T Consensus 280 ~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPV--RKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCS--SSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEEE
T ss_pred EEEEEcCC--CCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCCc
Confidence 88887321 23456788999999997777776 568999999864
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=7.8e-16 Score=141.92 Aligned_cols=238 Identities=11% Similarity=0.045 Sum_probs=173.2
Q ss_pred CCceEEeeCCcEEEeecCCe------------------------eeEEEEecccccccceecc-cCCcceeEEEeeccCc
Q 010784 112 PHDHILLDNNDIFSTQGSSI------------------------QNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHE 166 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d------------------------~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~ 166 (501)
.+..|+++++|.+++++..+ +.|.+||..++ +....+. ++-.....+++++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~--- 100 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDT--- 100 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECT---
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECC---
Confidence 48899999999999988877 47999998875 4444443 5556789999998
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEec-CCc--eeeec---------cCCCCceEEEEeeecCCC-CCCEEEEee-CCC
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS--CQRCF---------KGHNGPVSTLSDKLLGDG-SGKILASGG-EDA 232 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~--~~~~~---------~~h~~~v~~l~~s~~~~~-~~~~l~sg~-~dg 232 (501)
+|+++++...++.|++|| .+. .+..+ ..+......++++ + ++.++++.+ .++
T Consensus 101 ----------~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~----~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 101 ----------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVE----PSTGAVFVSDGYCNS 166 (329)
T ss_dssp ----------TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEEC----TTTCCEEEEECSSCC
T ss_pred ----------CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEe----CCCCeEEEEeCCCCC
Confidence 789999998899999999 554 44444 2445568899996 6 788888876 689
Q ss_pred cEEEEeccCCCccccccceeeccC----------CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYG----------HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 302 (501)
.|++|+.+ +. .+..+.. +-.....|+++++.+.++++...++.|++||..+++.+...
T Consensus 167 ~I~~~~~~-g~------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~----- 234 (329)
T 3fvz_A 167 RIVQFSPS-GK------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI----- 234 (329)
T ss_dssp EEEEECTT-SC------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-----
T ss_pred eEEEEcCC-CC------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-----
Confidence 99999954 33 2333321 22347899999854888888888999999999866432211
Q ss_pred eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC------CCcEEEEEcCCc-EEEEecCC
Q 010784 303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP------SKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~------~~~~l~~~~~d~-i~iwd~~~ 375 (501)
....+...+.+++++| +++.+++...+. |++||..+
T Consensus 235 -------------------------------------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 235 -------------------------------------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp -------------------------------------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred -------------------------------------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 0112455677788888 333333333444 99999988
Q ss_pred CCCCCCCCCcccc---cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 376 SQDAVKPQPMAEL---DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 376 ~~~~~~~~~~~~~---~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
++.+ ..+ .++...+..|+++|+ .++++...+++|++|++..
T Consensus 278 g~~~------~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 278 GEII------DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCEE------EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CeEE------EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 7654 444 356677999999999 8999988999999999854
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=6.1e-15 Score=133.20 Aligned_cols=242 Identities=10% Similarity=0.143 Sum_probs=170.3
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeecc------CCCCceEEEEeeecCCCCC
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFK------GHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~------~h~~~v~~l~~s~~~~~~~ 222 (501)
.+|-..+.++++++ +++++++...++.|.+|| .++.+..+. ++...+..+++. ++++
T Consensus 26 ~g~~~~p~~v~~~~-------------~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~---~~~g 89 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA-------------QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV---RNSG 89 (286)
T ss_dssp TTCBSCEEEEEECT-------------TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE---TTTT
T ss_pred CCccCCCceEEECC-------------CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEE---cCCC
Confidence 45667899999998 788888888899999999 666555553 244578889884 2566
Q ss_pred CEEEEeeC-CCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 223 KILASGGE-DATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 223 ~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.++++... ++.|.+||. ++. .+..+. .+...+..+++.+ +++++++...++.|.+||.... .....
T Consensus 90 ~l~v~~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~-~~~~~--- 157 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYNQ-YGQ------FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN-VLHKF--- 157 (286)
T ss_dssp EEEEEECGGGCEEEEECT-TSC------EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-EEEEE---
T ss_pred eEEEEcCCCCCEEEEECC-CCc------EEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCC-EEEEe---
Confidence 66666543 889999994 343 233332 3445688999997 6778887778899999996432 11100
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
....+...+..++++++|+++++...++ |++||... +.
T Consensus 158 ---------------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~- 196 (286)
T 1q7f_A 158 ---------------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY- 196 (286)
T ss_dssp ---------------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-
T ss_pred ---------------------------------------CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CE-
Confidence 0012335678999999999888877666 99999753 22
Q ss_pred CCCCCcccccC--cccCeEEEEecCC-eEEEEecCCC-cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 380 VKPQPMAELDG--HVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 380 ~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
+..+.. +...+..++++++ +++++...++ .|.+||. +++.+..+..+. ....+..++++|+|+++++
T Consensus 197 -----~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~---~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 197 -----LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV---KHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp -----EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS---CCSCEEEEEEETTTEEEEE
T ss_pred -----EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC---CCCcceeEEECCCCcEEEE
Confidence 233432 2357899999999 8888876775 9999995 567776664321 1234678999999987777
Q ss_pred eecCCCceEEEeeccCC
Q 010784 456 ASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~~~ 472 (501)
+ .++.|++|++...
T Consensus 268 -~--~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 -S--KDYRLYIYRYVQL 281 (286)
T ss_dssp -E--TTTEEEEEECSCC
T ss_pred -C--CCCeEEEEEcccc
Confidence 5 4599999998653
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=2.8e-16 Score=161.40 Aligned_cols=285 Identities=9% Similarity=0.038 Sum_probs=164.7
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCc-----eEEEEeeecCCCCCCEEE
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP-----VSTLSDKLLGDGSGKILA 226 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~-----v~~l~~s~~~~~~~~~l~ 226 (501)
....++.|+| ++.+++++ ||+|++|| ++++...+.+|... ...+.|| |+|++|+
T Consensus 17 ~~~~~~~w~~-------------dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S----pdg~~l~ 77 (740)
T 4a5s_A 17 LKLYSLRWIS-------------DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS----PDGQFIL 77 (740)
T ss_dssp CCCCCEEECS-------------SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC----TTSSEEE
T ss_pred ccccccEECC-------------CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEEC----CCCCEEE
Confidence 3466889999 88888886 99999999 67766667766543 2347777 8999999
Q ss_pred EeeCC---------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 227 SGGED---------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 227 sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
.++.+ +.+.+||+.+++ ...+..|...+...+|+| +++.|+.++ ++.|++||+.+++..+..
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~-------~~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQ-------LITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTE-------ECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEECCeeeEEEccceEEEEEECCCCc-------EEEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence 98876 567799999875 345667788899999999 777787774 689999999887543211
Q ss_pred ecccc--e--ec---------CCCceeeecCCCeEEEEeCCc----EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 298 CCVGM--T--SV---------PGVPVDMKCHESMLYIASGSS----VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 298 ~~~~~--~--~~---------~~~~~~~~~~~~~~~~~~~~~----i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
..... . .. -+....+.+++++..++.... +.+|++..... -..+...+..+.+.+.|..
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~---~~~~~~~~~~~~yp~~G~~- 224 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD---ESLQYPKTVRVPYPKAGAV- 224 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS---TTCSSCEEEEEECCBTTSC-
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC---CCCCCCcceeecCCCCcCc-
Confidence 00000 0 00 011112233333333222211 11111100000 0001122333333333211
Q ss_pred EEEcCC-cEEEEecCC---CCCCCCCCCccccc------CcccCeEEEEecCC-eEEEEe----cCCCcEEEEeCCCcc-
Q 010784 361 CTGGIG-KAMTWDIRR---SQDAVKPQPMAELD------GHVGSVTQLHMDPY-KIVTGG----RDDLRINIWETDTGM- 424 (501)
Q Consensus 361 ~~~~~d-~i~iwd~~~---~~~~~~~~~~~~~~------~h~~~v~~l~~~~~-~~l~~g----s~dg~i~iwd~~~~~- 424 (501)
... .|++||+.+ ++.. ....+. +|...+..++|+|+ ++++.. +.+..|.+||+.+++
T Consensus 225 ---~~~~~l~v~d~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 225 ---NPTVKFFVVNTDSLSSVTNA----TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp ---CCEEEEEEEETTSCCSSSCC----CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred ---CCeeEEEEEECCCCCCCCcc----eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 111 277888887 5311 012222 47788999999999 754443 234479999999887
Q ss_pred ---cccccccCCCCCCCccee-----eeEeeccccEEE-Eeec-CCCceEEEeeccCCccceee
Q 010784 425 ---LANSLLCNYPEEADISTG-----CSAMAVSGCRIV-TASY-GEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 425 ---~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~-s~~~-d~~g~i~~w~~~~~~~~~~s 478 (501)
+....... ...+...+. ..+|+|||+.|+ ..+. +....|++|+...+....++
T Consensus 298 ~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 298 RWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp EEEECGGGCEE-EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred ccceeEEEEee-eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 32222100 012333443 688999999877 5552 23356778887665544333
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.4e-16 Score=151.16 Aligned_cols=282 Identities=5% Similarity=-0.090 Sum_probs=170.5
Q ss_pred CceEEeeCCcEEEeecCC---eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 113 HDHILLDNNDIFSTQGSS---IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
+..++|+|+|.+++.... +..+.+|+..++ +......++......+.|+| +|+.|+.++.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~ 103 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFIST-------------DERAFFYVKNELN 103 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECT-------------TSSEEEEEETTTE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC-cEEEeecCCCCccccceECC-------------CCCEEEEEEcCCc
Confidence 788899999999876533 346788888764 43333333333333478888 8999999999999
Q ss_pred eEEec--CCceeeeccCCCCceEE---EEee------------ecCCCCCCEEEEe-----eCCCcEEEEeccCCCcccc
Q 010784 190 IRLWW--KGSCQRCFKGHNGPVST---LSDK------------LLGDGSGKILASG-----GEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 190 i~vwd--~~~~~~~~~~h~~~v~~---l~~s------------~~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~ 247 (501)
|.+|| .++.......+...... ++|. +...++++.++.+ ..+..|.+||+.+++.
T Consensus 104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--- 180 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--- 180 (396)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE---
T ss_pred EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE---
Confidence 99998 44444444334332222 2110 0112566665544 3566899999987652
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
..+..+...+..+.|+|.++..|+..+.+ ..|.+||+.+++.
T Consensus 181 ----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------------------- 228 (396)
T 3c5m_A 181 ----EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---------------------------- 228 (396)
T ss_dssp ----EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----------------------------
T ss_pred ----EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----------------------------
Confidence 22334667788999997445556655543 3466666654321
Q ss_pred EeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccC
Q 010784 322 ASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGS 394 (501)
Q Consensus 322 ~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~ 394 (501)
....... ...+..+.|+|+|+.|+.++.+ + |++||+.+++.. .+..+.+
T Consensus 229 ----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~~---- 284 (396)
T 3c5m_A 229 ----------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE----EVMVMPP---- 284 (396)
T ss_dssp ----------------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----EEEECCS----
T ss_pred ----------------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE----EeeeCCC----
Confidence 1111111 2347789999999977766532 4 999999876532 1122222
Q ss_pred eEEEEecC-C-eEEEEec----------------CCCcEEEEeCCCcccccccccCCCC------CCCcceeeeEeeccc
Q 010784 395 VTQLHMDP-Y-KIVTGGR----------------DDLRINIWETDTGMLANSLLCNYPE------EADISTGCSAMAVSG 450 (501)
Q Consensus 395 v~~l~~~~-~-~~l~~gs----------------~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g 450 (501)
.. +.|+| + ++++.++ .++.|++||+.+++.. .+..+... .....+..++|+|||
T Consensus 285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg 362 (396)
T 3c5m_A 285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPND 362 (396)
T ss_dssp EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCC
Confidence 23 88999 8 6666543 3478999999887643 33211100 000025667899999
Q ss_pred cEEEEeecCCCceEEEeecc
Q 010784 451 CRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.|+.++. .++...+|.+.
T Consensus 363 ~~l~~~s~-~~~~~~l~~~~ 381 (396)
T 3c5m_A 363 DGVLFTSD-FEGVPAIYIAD 381 (396)
T ss_dssp SEEEEEEC-TTSSCEEEEEE
T ss_pred CeEEEEec-CCCCceEEEEE
Confidence 99888774 34555555544
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=4.2e-15 Score=137.46 Aligned_cols=273 Identities=8% Similarity=0.024 Sum_probs=182.6
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
..+.+++|++++..++..+.++.++.|. .+....+..+...+.+++|++ ++++++++..++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~~~~~~~i 68 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDR-------------QGQLFLLDVFEGNI 68 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECT-------------TSCEEEEETTTCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc----cceeEEEeccCccccCcEECC-------------CCCEEEEECCCCEE
Confidence 3488899999998888888899999993 355666777777889999998 78888888889999
Q ss_pred EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCccccccceeec--cCCCCcee
Q 010784 191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQQALKATL--YGHEKPIK 262 (501)
Q Consensus 191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~ 262 (501)
.+|| .++.......+...+.+++++ ++++++++...+ +.|.+||..++.. ...+ ..+...+.
T Consensus 69 ~~~d~~~~~~~~~~~~~~~~~~~i~~~----~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 69 FKINPETKEIKRPFVSHKANPAAIKIH----KDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIEDLSTAYCID 138 (333)
T ss_dssp EEECTTTCCEEEEEECSSSSEEEEEEC----TTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECSSSSCCCEE
T ss_pred EEEeCCCCcEEEEeeCCCCCcceEEEC----CCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEccCccCCccc
Confidence 9999 344333333566789999996 788888877666 6899999887653 1112 12445788
Q ss_pred EEEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 263 LMSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
.+.+++ ++.++++... .+.|..+|..+++..
T Consensus 139 ~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------ 175 (333)
T 2dg1_A 139 DMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT------------------------------------------ 175 (333)
T ss_dssp EEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE------------------------------------------
T ss_pred ceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE------------------------------------------
Confidence 999997 6666666543 244555554433210
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecCC-CCCCCCC--CCcccccCcccCeEEEEecCC-eEEEEec
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIRR-SQDAVKP--QPMAELDGHVGSVTQLHMDPY-KIVTGGR 410 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~~-~~~~~~~--~~~~~~~~h~~~v~~l~~~~~-~~l~~gs 410 (501)
.+......+..++|+|+++.++ +.+.++ |.+||+.. +...... .....+.++ ..+..++++++ +++++..
T Consensus 176 ---~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 176 ---PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp ---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred ---EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence 0111123467899999998554 444455 99999964 2211000 000112222 46788999999 8777766
Q ss_pred CCCcEEEEeCCCcccccccccCCC-CCCCcceeeeEeeccccEEEEeec
Q 010784 411 DDLRINIWETDTGMLANSLLCNYP-EEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 411 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.++.|.+||. +++.+..+..... .++...+..++|+||++.|+.++.
T Consensus 252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 7889999998 5666666632110 112236789999999877766653
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=9.1e-15 Score=132.04 Aligned_cols=233 Identities=11% Similarity=0.120 Sum_probs=168.4
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc------cCCcceeEEEee-ccCcCcccccCCCCcCcEEEEe
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS------DHKARITCMRLF-PLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~------~h~~~V~~~~~~-~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+.++++++++.++++...++.|.+||... +....+. +|...+..+++. + +++++++.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~-------------~g~l~v~~ 95 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRN-------------SGDIIVTE 95 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETT-------------TTEEEEEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcC-------------CCeEEEEc
Confidence 488999999999999988899999999873 4444442 345678899995 4 66777766
Q ss_pred eC-CCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCC
Q 010784 185 SC-DHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEK 259 (501)
Q Consensus 185 ~~-dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~ 259 (501)
.. ++.|.+|| .++.+..+. .+...+.++++. ++++++++...++.|.+||.... ....+. .+..
T Consensus 96 ~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~~~~~ 164 (286)
T 1q7f_A 96 RSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD----NKGRIIVVECKVMRVIIFDQNGN-------VLHKFGCSKHLE 164 (286)
T ss_dssp CGGGCEEEEECTTSCEEEEECTTTCSCEEEEEEC----TTSCEEEEETTTTEEEEECTTSC-------EEEEEECTTTCS
T ss_pred CCCCCEEEEECCCCcEEEEecCccCCCceEEEEe----CCCCEEEEECCCCEEEEEcCCCC-------EEEEeCCCCccC
Confidence 43 88999999 666666654 344578899985 78888888778899999996532 233332 3455
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.+..+++++ +++++++.+.++.|++||.... .+ .
T Consensus 165 ~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~-~~--------------------------------------------~ 198 (286)
T 1q7f_A 165 FPNGVVVND-KQEIFISDNRAHCVKVFNYEGQ-YL--------------------------------------------R 198 (286)
T ss_dssp SEEEEEECS-SSEEEEEEGGGTEEEEEETTCC-EE--------------------------------------------E
T ss_pred CcEEEEECC-CCCEEEEECCCCEEEEEcCCCC-EE--------------------------------------------E
Confidence 688999997 6778887788899999997432 11 1
Q ss_pred eec--cCCCcEEEEEEcCCCcEEEEEcCC--cEEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-eEEEEecCC
Q 010784 340 TPA--ICKPILHSFSIMPSKSLICTGGIG--KAMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 340 ~~~--~~~~~v~~v~~~~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~~l~~gs~d 412 (501)
.+. ++...+..++++++|+++++...+ .|.+||.. ++. +..+..+. ..+.+++++|+ +++++. .|
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~------~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~ 270 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL------ISALESKVKHAQCFDVALMDDGSVVLAS-KD 270 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE------EEEEEESSCCSCEEEEEEETTTEEEEEE-TT
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCE------EEEEcccCCCCcceeEEECCCCcEEEEC-CC
Confidence 111 123567899999999998888754 49999954 332 24443332 34789999999 888884 79
Q ss_pred CcEEEEeCCCcc
Q 010784 413 LRINIWETDTGM 424 (501)
Q Consensus 413 g~i~iwd~~~~~ 424 (501)
++|++|++....
T Consensus 271 ~~v~v~~~~~~~ 282 (286)
T 1q7f_A 271 YRLYIYRYVQLA 282 (286)
T ss_dssp TEEEEEECSCCC
T ss_pred CeEEEEEccccc
Confidence 999999986543
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=1.5e-15 Score=142.28 Aligned_cols=247 Identities=8% Similarity=-0.019 Sum_probs=158.7
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecc-cccccceecccC-CcceeEEEeeccCcCcccccCCCCcCcE--EEEee-
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFL-SESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRTENV--LVTSS- 185 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~-~~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~--l~s~~- 185 (501)
..+..++++|+|.++++++.+ .+.+|++. ++ +........ .+.+.+++|+| +|++ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~g~~~~~~~sp-------------dg~~l~~~~~~~ 104 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIGGHPRANDADT-------------NTRAIFLLAAKQ 104 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECCSSGGGGCTTS-------------CCEEEEEEECSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecCCCCccEEECC-------------CCCEEEEEEecC
Confidence 368899999999998888877 89999987 54 433222110 02244566666 8884 55553
Q ss_pred ------------CCCceEEec---CCceeeecc----CCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEecc-CCCc
Q 010784 186 ------------CDHSIRLWW---KGSCQRCFK----GHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLS-SSGK 244 (501)
Q Consensus 186 ------------~dg~i~vwd---~~~~~~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~-~~~~ 244 (501)
.+|++.+|+ .++....+. .+...+.+++|+ ++|+++++++. ++.|++|++. +++.
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s----pdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD----PTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC----CCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 689999998 344433332 255678999997 89998887664 6799999998 5542
Q ss_pred cccccceeecc--CCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeE
Q 010784 245 RGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 245 ~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
..+..+. .|...+..++|+| +++++++++ .++.|.+|++. +++......
T Consensus 181 ----~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~--------------------- 234 (365)
T 1jof_A 181 ----ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHH--------------------- 234 (365)
T ss_dssp ----EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE---------------------
T ss_pred ----EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccc---------------------
Confidence 1122232 2456789999998 676776666 47899999875 332210000
Q ss_pred EEEeCCcEEEEEcCCCceEeee----ccCCC------cEEEEE-EcCCCcEEEEEc--CC-----cEEEEecC-CCCCCC
Q 010784 320 YIASGSSVVTIDLRTMQKVMTP----AICKP------ILHSFS-IMPSKSLICTGG--IG-----KAMTWDIR-RSQDAV 380 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~----~~~~~------~v~~v~-~~~~~~~l~~~~--~d-----~i~iwd~~-~~~~~~ 380 (501)
.+..+ .+|.. .+..++ |+|||++|+++. .+ .|.+|++. +++..
T Consensus 235 -----------------~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~- 296 (365)
T 1jof_A 235 -----------------SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE- 296 (365)
T ss_dssp -----------------EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-
T ss_pred -----------------eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE-
Confidence 00011 11222 578999 999999887665 34 59999996 33311
Q ss_pred CCCCcc-cccCcccCeEEEEecC---C-eEEEEecC-CCcEEEEeCCCc
Q 010784 381 KPQPMA-ELDGHVGSVTQLHMDP---Y-KIVTGGRD-DLRINIWETDTG 423 (501)
Q Consensus 381 ~~~~~~-~~~~h~~~v~~l~~~~---~-~~l~~gs~-dg~i~iwd~~~~ 423 (501)
.+. ....+...+..++|+| + +++++++. ++.|.+|++...
T Consensus 297 ---~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 297 ---KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ---EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ---EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 001 1223444567889999 6 55555544 589999998755
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=3e-15 Score=141.60 Aligned_cols=280 Identities=10% Similarity=-0.064 Sum_probs=163.7
Q ss_pred ecccccccceecccCCcceeE-----EEeeccCcCcccccCCCCcCcEEEEeeC-CCc--eEEec--CCceeeeccCCCC
Q 010784 138 NFLSESYYRATLSDHKARITC-----MRLFPLHETSLFRSEPQRTENVLVTSSC-DHS--IRLWW--KGSCQRCFKGHNG 207 (501)
Q Consensus 138 ~~~~~~~~~~~~~~h~~~V~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~--i~vwd--~~~~~~~~~~h~~ 207 (501)
+..++ .....+..|...... .+|+| ||++|+.++. +|. |.+|| .++......++..
T Consensus 16 ~~~~g-~~~~~lt~~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~ 81 (388)
T 3pe7_A 16 DASTG-AQVTRLTPPDVTCHRNYFYQKCFTR-------------DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD 81 (388)
T ss_dssp CTTTC-CEEEECSCTTSCEECCCTTSCCBCT-------------TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred cCCCC-cceEEecCCcccccchhhcCccCCC-------------CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence 44443 556677777766655 67777 8999988887 675 66677 5555555556666
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE--eecCCeEEEEEeCCCeEEE
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~l~s~s~dg~v~v 285 (501)
.+..+.|+ |+++.|+.++.++.|++||+.+++. ......+...+....+ ++ ++..++....++
T Consensus 82 ~~~~~~~s----pdg~~l~~~~~~~~l~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~---- 146 (388)
T 3pe7_A 82 NTFGGFLS----PDDDALFYVKDGRNLMRVDLATLEE------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRR---- 146 (388)
T ss_dssp CSSSCEEC----TTSSEEEEEETTTEEEEEETTTCCE------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEG----
T ss_pred CccceEEc----CCCCEEEEEeCCCeEEEEECCCCcc------eeeeechhhcccccceeECC-CCCeeccccccC----
Confidence 66567887 8999999999999999999998763 3334444444433333 44 555554321100
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEc
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGG 364 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~ 364 (501)
........... ........ ....+.+||+.+++... +..+...+..+.|+| +|+.|+..+
T Consensus 147 ---~~~~~~~~~~~--------~~~~~~~~-------~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 147 ---EDWVPLTDWKK--------FHEFYFTK-------PCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp ---GGCCCCCSHHH--------HHHHGGGC-------CCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEE
T ss_pred ---cccccccccch--------hhhhhccC-------CcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEE
Confidence 00000000000 00000000 01256777777765433 334567789999999 999887766
Q ss_pred C------Cc-EEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-e-EEEEecCCC----cEEEEeCCCccccccc
Q 010784 365 I------GK-AMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-K-IVTGGRDDL----RINIWETDTGMLANSL 429 (501)
Q Consensus 365 ~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~-~l~~gs~dg----~i~iwd~~~~~~~~~~ 429 (501)
. .. |.++|....+. ..+..+. ..+..++|+|+ + ++..+..++ .|++||+.+++.....
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGTNM-------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT 280 (388)
T ss_dssp CSCTTTSSCSEEEEETTSCCC-------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred ecCCCCCcceEEEEeCCCCce-------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence 3 23 88888765432 3333333 35788899999 5 434332222 3999999988743222
Q ss_pred ccCCCCCCC---cceeeeEeeccccEEEEeec-------CCCceEEEeeccCCccc
Q 010784 430 LCNYPEEAD---ISTGCSAMAVSGCRIVTASY-------GEPGLLQFRDFSNATCP 475 (501)
Q Consensus 430 ~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~-------d~~g~i~~w~~~~~~~~ 475 (501)
.. .++. ......+|+|||+.|+.... +.+..|++||+..+...
T Consensus 281 ~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 281 SM---PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EE---CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred cC---CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 11 1100 01233479999998886431 24578999998776543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=9.4e-15 Score=148.47 Aligned_cols=251 Identities=10% Similarity=-0.024 Sum_probs=165.1
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe--eCCCceEEec--CCceeeeccCCCCceE---------EE
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS--SCDHSIRLWW--KGSCQRCFKGHNGPVS---------TL 212 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~--~~dg~i~vwd--~~~~~~~~~~h~~~v~---------~l 212 (501)
...+.+|...|..++|++ ++-++++. +.++...||. .+.....+..|...+. ..
T Consensus 16 ~~~~~~~~~~~~~~~~s~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 82 (662)
T 3azo_A 16 AALVASRSGRPACVGAVG-------------DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPW 82 (662)
T ss_dssp HHHHHHTCSCCEEEEEET-------------TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCE
T ss_pred HHHHhhcCCccceeEEcC-------------CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccc
Confidence 345678999999999998 66677776 5688899997 4445566666666655 55
Q ss_pred EeeecCCCCCCE-EEEeeC-CCcEEEEecc--C-CCccccccceeeccC-----CCCceeEEEEeecCCeEEEEEeCC--
Q 010784 213 SDKLLGDGSGKI-LASGGE-DATVRLWSLS--S-SGKRGQQALKATLYG-----HEKPIKLMSVAGHKSFLLVTISKD-- 280 (501)
Q Consensus 213 ~~s~~~~~~~~~-l~sg~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~s~d-- 280 (501)
.|+ .+|+|+. |+.++. +..|.++++. . +. ...+.. |...+..++|+| +++.|++++.+
T Consensus 83 ~~~--~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~ 152 (662)
T 3azo_A 83 AGV--PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFT 152 (662)
T ss_dssp EEE--CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEEC
T ss_pred eee--eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-------CEeccCCccCCCCccccCcEECC-CCCEEEEEEeccc
Confidence 553 1267887 665443 5566666665 2 32 334444 667888999998 77788888766
Q ss_pred --------CeEEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCC
Q 010784 281 --------SKVRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICK 345 (501)
Q Consensus 281 --------g~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~ 345 (501)
..|++||+.+ ++. ..+. .+.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------------------------------~~l~~~~~ 187 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAV---------------------------------------------RELSDDAH 187 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGS---------------------------------------------EESSCSCS
T ss_pred CCCCCCceeEEEEEECCCCccccCCce---------------------------------------------eEEEecCC
Confidence 4677777765 321 1222 344
Q ss_pred CcEEEEEEcCCCcEEEEEc-CC-------c-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-
Q 010784 346 PILHSFSIMPSKSLICTGG-IG-------K-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL- 413 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~-~d-------~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg- 413 (501)
..+..++|+|||++|+.++ ++ . |++||+. +++.. .......+|...+..+.|+|+ +++++++.++
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 5677889999999998776 32 5 9999998 45100 011223345678999999999 8877777788
Q ss_pred -cEEEEeCCCcccccccccCCCCCCC---cceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 414 -RINIWETDTGMLANSLLCNYPEEAD---ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 414 -~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
.|.+||+.+++.......+...... -.+..++|+++++++++++ . +.+++|.+.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d 322 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILD 322 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEE
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE--c-CccEEEEEE
Confidence 6667776666654433211100000 0156789999999999987 6 888888443
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=4.3e-13 Score=131.37 Aligned_cols=330 Identities=10% Similarity=0.045 Sum_probs=211.5
Q ss_pred eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC--
Q 010784 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK-- 195 (501)
Q Consensus 118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~-- 195 (501)
.++.+.++++...++.|.++|..++ +.+.++... ..+..+.|+| +|+++++++.|+.|.+||.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~Sp-------------DGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSA-------------SGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECT-------------TSCEEEEEETTSEEEEEETTS
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC-eEEEEEeCC-CCccceEECC-------------CCCEEEEEcCCCeEEEEECCC
Confidence 5567788889999999999999985 677666543 3567899999 8999999999999999993
Q ss_pred --CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC----------CCC-ce
Q 010784 196 --GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG----------HEK-PI 261 (501)
Q Consensus 196 --~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~-~v 261 (501)
++.+..+... .....++|++.+.++|++++++.. +++|.++|..+.+. +..+.. |.. .+
T Consensus 228 ~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 228 KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTTTCCEESCCCE
T ss_pred CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccccccccccCCCce
Confidence 3445555543 345788886111148888887765 58999999888663 333221 222 57
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEeC--CcEEEEEcCCCce
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASG--SSVVTIDLRTMQK 337 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~~~d~~~~~~ 337 (501)
..+..++.....++....+|.|.++|....+.... ........+..+.+++ ..++++.. +.|.++|+.+++.
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v----~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT----TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE----EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee----eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 77888875666777777889999999877542211 1112222333444444 44455543 4899999999988
Q ss_pred Eeeecc-----CCCcEEEEEEcCC-CcEEEEEc-CCc-EEEEecCCCCCC-CCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784 338 VMTPAI-----CKPILHSFSIMPS-KSLICTGG-IGK-AMTWDIRRSQDA-VKPQPMAELDGHVGSVTQLHMDPY-KIVT 407 (501)
Q Consensus 338 ~~~~~~-----~~~~v~~v~~~~~-~~~l~~~~-~d~-i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~-~~l~ 407 (501)
+..+.. |.+.-..+ ++|+ +..++++. .++ |.++|..+.+.. ...+.+.++......-..+..+|+ +.+.
T Consensus 377 ~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 377 VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence 765543 33222222 5787 55555554 334 999999873210 012334555544333355778999 4444
Q ss_pred EecC-------CCcEEEEeCCCc-----ccc-cccccC---CCCCCCcceeeeEeeccccEEEEeec---CCCceEEEee
Q 010784 408 GGRD-------DLRINIWETDTG-----MLA-NSLLCN---YPEEADISTGCSAMAVSGCRIVTASY---GEPGLLQFRD 468 (501)
Q Consensus 408 ~gs~-------dg~i~iwd~~~~-----~~~-~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~---d~~g~i~~w~ 468 (501)
.... .++|.++|+.+. ... ..+... ........+..+.|+++|+.+..+.. +.++.|.++|
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 4322 358999999876 211 222100 00112356888999999998877643 2468999999
Q ss_pred ccCCcc
Q 010784 469 FSNATC 474 (501)
Q Consensus 469 ~~~~~~ 474 (501)
..+...
T Consensus 536 ~~t~~~ 541 (567)
T 1qks_A 536 DKTLEL 541 (567)
T ss_dssp TTTTEE
T ss_pred CCCceE
Confidence 887653
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=2e-12 Score=117.27 Aligned_cols=276 Identities=7% Similarity=-0.004 Sum_probs=187.4
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
..+.+++++++|.++++...++.+.+||.. +......+..+...+.++++.+ ++.++++...++.|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-------------~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-------------DGEVWFTENAANKI 80 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-------------TSCEEEEETTTTEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-------------CCCEEEeCCCCCeE
Confidence 458899999999988887778899999987 3222222234556789999988 78888887778899
Q ss_pred EEec-CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 191 RLWW-KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 191 ~vwd-~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
..|| .++ ...+ ......+.++++. +++.++++...++.|.+||. ++.. .......+...+..+++.
T Consensus 81 ~~~~~~g~-~~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 81 GRITKKGI-IKEYTLPNPDSAPYGITEG----PNGDIWFTEMNGNRIGRITD-DGKI-----REYELPNKGSYPSFITLG 149 (299)
T ss_dssp EEECTTSC-EEEEECSSTTCCEEEEEEC----TTSCEEEEETTTTEEEEECT-TCCE-----EEEECSSTTCCEEEEEEC
T ss_pred EEECCCCc-EEEEeCCCcCCCceeeEEC----CCCCEEEEecCCceEEEECC-CCCE-----EEecCCCCCCCCceEEEc
Confidence 9998 433 2222 2345578889885 78888887777889999998 4432 112223345567889998
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
+ ++.++++...++.|..||. +++... .........
T Consensus 150 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------------------------~~~~~~~~~ 184 (299)
T 2z2n_A 150 S-DNALWFTENQNNAIGRITE-SGDITE-------------------------------------------FKIPTPASG 184 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEE-------------------------------------------EECSSTTCC
T ss_pred C-CCCEEEEeCCCCEEEEEcC-CCcEEE-------------------------------------------eeCCCCCCc
Confidence 6 6677776666788999988 543210 001122345
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
+.+++++++|+++++...++ |.+||. +++.. ......+...+.+++++++ .++++...++.|.+||. +++.
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 257 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-----EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII 257 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCcEE-----EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence 78899999999887776555 999998 54421 1122334567899999998 87777667889999998 4442
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
..+.. ..+...+.++++ ++|++.++.. .+.|..++...
T Consensus 258 -~~~~~---~~~~~~~~~i~~-~~g~l~v~~~---~~~l~~~~~~~ 295 (299)
T 2z2n_A 258 -EEYPI---QIKSAEPHGICF-DGETIWFAME---CDKIGKLTLIK 295 (299)
T ss_dssp -EEEEC---SSSSCCEEEEEE-CSSCEEEEET---TTEEEEEEEC-
T ss_pred -EEEeC---CCCCCccceEEe-cCCCEEEEec---CCcEEEEEcCc
Confidence 23311 123456888999 8888777764 25666666544
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.8e-13 Score=122.31 Aligned_cols=238 Identities=8% Similarity=-0.022 Sum_probs=163.0
Q ss_pred CCceEEeeCCcEEEe-ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 112 PHDHILLDNNDIFST-QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~-~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+..++++++|.+++ +...++.|.+|+..+. ........+...+.++++.+ +++++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~-------------~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDG-------------AGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECT-------------TCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECC-------------CCCEEEEcC-CCEE
Confidence 467899999999888 6677889999997653 22222223445688899988 778777666 8899
Q ss_pred EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
.+|| .+.....+. .....+.++++. ++++++++...++.|.+|+..+... ..........+..+++.+
T Consensus 90 ~~~d~~~~~~~~~~~~~~~~p~~i~~~----~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPFDGLNYPEGLAVD----TQGAVYVADRGNNRVVKLAAGSKTQ------TVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp EEECTTCSCCEECCCCSCSSEEEEEEC----TTCCEEEEEGGGTEEEEECTTCCSC------EECCCCSCCSCCCEEECT
T ss_pred EEEeCCCceEeeeecCCcCCCcceEEC----CCCCEEEEECCCCEEEEEECCCcee------EeeccccCCCceeEEEeC
Confidence 9999 444444443 233568899985 7888888777788999997654432 111222334567889987
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
+++++++...++.|.+||........ ....+...+
T Consensus 160 -~g~l~v~~~~~~~i~~~~~~~~~~~~--------------------------------------------~~~~~~~~p 194 (270)
T 1rwi_B 160 -SGNVYVTDTDNNRVVKLEAESNNQVV--------------------------------------------LPFTDITAP 194 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECTTTCCEEE--------------------------------------------CCCSSCCSE
T ss_pred -CCCEEEEECCCCEEEEEecCCCceEe--------------------------------------------ecccCCCCc
Confidence 66777777777899999987653210 001122557
Q ss_pred EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 349 HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
.+++++++|.++++...++ |.+||....... .....+...+.+++++++ +++++...++.|++++....+.
T Consensus 195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEEECTTCCEEEEETTTSCEEEECTTCSCCE------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eEEEECCCCCEEEEECCCCcEEEEcCCCCcce------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 8899999998888877666 999998764322 111223356899999998 8888888999999999876554
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1.2e-13 Score=128.82 Aligned_cols=259 Identities=15% Similarity=0.090 Sum_probs=171.3
Q ss_pred eEEeeCCcEEEeecC----------CeeeEEEEecccccccceecccC------CcceeEEEeeccCcCcccccCCCCcC
Q 010784 115 HILLDNNDIFSTQGS----------SIQNIKIDNFLSESYYRATLSDH------KARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~----------~d~~i~vw~~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
.++++|+|+++.+++ .++.|.+||..+. +.+..+..+ ......++++| +|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~~~~~g~~p~~i~~sp-------------dg 119 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPKRVQGLNYDGLFRQTT-------------DG 119 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTTBCCBCCCGGGEEECT-------------TS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-cEEEEEEcCccccccCCCcceEEECC-------------CC
Confidence 899999999888765 4788999999874 555555432 34567788988 89
Q ss_pred cEEEEeeC--CCceEEec--CCceeee-ccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc-cccce
Q 010784 179 NVLVTSSC--DHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG-QQALK 251 (501)
Q Consensus 179 ~~l~s~~~--dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~ 251 (501)
++|+++.. +++|.+|| +++.+.. +.. .+. ..+.+. ++ ...+++.+.||.+.+|++....... .....
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~~v~~~----p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~ 193 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-WSVIPQ----PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK 193 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-EEEEEC----TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-ceeEEc----CCCCeeEEEECCCCcEEEEEECCCCcEeeecccc
Confidence 99988874 68999999 6666666 542 222 223343 33 3678888999999999987633200 00000
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--ceeccc-------ceecCCCceeeecCCCeEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR--SSCCVG-------MTSVPGVPVDMKCHESMLYIA 322 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 322 (501)
..+..+..++ .+.+.+ ++..++..+.++.|.++|+....... ...... ........+.+..+...++++
T Consensus 194 ~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 194 QMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp CCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred ceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 1222333332 223344 44566667788999999997653211 000000 001111224455555667766
Q ss_pred eC------------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCC--CCCCCCCCcccc
Q 010784 323 SG------------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRS--QDAVKPQPMAEL 388 (501)
Q Consensus 323 ~~------------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~--~~~~~~~~~~~~ 388 (501)
.. ..+.+||+.+++.+.++..+. +.+++|+|+|++|++++.+.|.+||..++ +.+ .++
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~------~~i 343 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLL------RTI 343 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEE------EEE
T ss_pred EccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceee------EEe
Confidence 42 379999999999999998876 89999999999999888733999999997 543 665
Q ss_pred cCcccCeEEEEecCC
Q 010784 389 DGHVGSVTQLHMDPY 403 (501)
Q Consensus 389 ~~h~~~v~~l~~~~~ 403 (501)
..+......++++|+
T Consensus 344 ~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 344 EGAAEASLQVQFHPV 358 (361)
T ss_dssp TTSCSSEEEEEECCC
T ss_pred ccCCCCcEEEEecCC
Confidence 556677788888886
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=8.7e-14 Score=129.39 Aligned_cols=253 Identities=11% Similarity=-0.002 Sum_probs=158.5
Q ss_pred CceEEeeCCcEEEeec---------CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 113 HDHILLDNNDIFSTQG---------SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g---------~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
+...++ ||.+++.. ..++.+.+|++.++ +. ..+ ..+..++|+| ||+.|+.
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~Sp-------------Dg~~la~ 75 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISP-------------DGKKIAF 75 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECT-------------TSSEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECC-------------CCCEEEE
Confidence 445556 66666543 23778999998875 33 233 5688899999 8898888
Q ss_pred eeCC---Cc--eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-------------------------
Q 010784 184 SSCD---HS--IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------------------------- 231 (501)
Q Consensus 184 ~~~d---g~--i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------------------------- 231 (501)
++.+ +. |.+|| .++...... +.. +..+.|+ |+|+.|+.++.+
T Consensus 76 ~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~ws----pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 76 MRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWN----EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEEC----TTSSEEEEEEECCCC---------CCCC---------
T ss_pred EEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeEC----CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 7754 33 66677 344333333 334 8999997 899988887642
Q ss_pred --CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-------eEEEEECCCCccccceecccc
Q 010784 232 --ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-------KVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 232 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~~~~~ 302 (501)
..|.+||+.+++ .+..+.. . .+..+.|+| ++ +++++..++ ...+|.+.++
T Consensus 150 ~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~----------- 208 (347)
T 2gop_A 150 EKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDG----------- 208 (347)
T ss_dssp CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETT-----------
T ss_pred ccceEEEEECCCCe------EEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCC-----------
Confidence 578899998764 1133333 3 678889997 56 777665542 2222222221
Q ss_pred eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C-------Cc-EEEEec
Q 010784 303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I-------GK-AMTWDI 373 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~-------d~-i~iwd~ 373 (501)
+ ...+..+ ..+..+ +|+|+.|+.++ . .. |.+||
T Consensus 209 ---------------------------------~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 209 ---------------------------------K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp ---------------------------------E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred ---------------------------------c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence 1 1112222 334444 89998877665 2 23 88888
Q ss_pred CCCCCCCCCCCcccccCcccCeEE-EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 374 RRSQDAVKPQPMAELDGHVGSVTQ-LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
+++. ......|...+.. +.|+ +.++++++.++.++|| +.+++....+ .+...+..++|+| .+
T Consensus 251 -~~~~------~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~------~~~~~v~~~~~s~--~~ 313 (347)
T 2gop_A 251 -GKEV------MGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIA------KGRHWIMGFDVDE--IV 313 (347)
T ss_dssp -SSCE------EESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEE------CSSSEEEEEEESS--SE
T ss_pred -CCce------EeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEe------cCCCeEEeeeeeC--cE
Confidence 3332 1333455667876 8999 7677777789999999 8766553333 2356788999999 67
Q ss_pred EEEeecCCCceE-EEeecc
Q 010784 453 IVTASYGEPGLL-QFRDFS 470 (501)
Q Consensus 453 l~s~~~d~~g~i-~~w~~~ 470 (501)
+++++. ++.. .+|.+.
T Consensus 314 ~~~~~~--~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKET--ATRLRELFTWD 330 (347)
T ss_dssp EEEEEC--SSSCCEEEEES
T ss_pred EEEEcC--CCChHHheEeC
Confidence 777663 3443 666665
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2.1e-13 Score=123.75 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=156.1
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
+..+..+.....+++|+| +++ +++++..++.|..|| .+. ...+..+...+.+++++ ++|+
T Consensus 20 ~~~l~~~~~~~eg~~~d~-------------~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~----~dg~ 81 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVP-------------ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLN----KQGH 81 (296)
T ss_dssp CEEEECCCSSEEEEEEEG-------------GGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEEC----TTCC
T ss_pred EEEEecCCccccCCeEeC-------------CCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeEC----CCCc
Confidence 344555666788999999 777 788888899999999 444 66777778889999996 7888
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeecc---C-CCCceeEEEEeecCCeEEEEEeC-----------------CCe
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLY---G-HEKPIKLMSVAGHKSFLLVTISK-----------------DSK 282 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~~~~~~~~l~s~s~-----------------dg~ 282 (501)
++++...++.|.+||..++.. ..... . ....+..+++++ +++++++.+. .+.
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEW------ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCE------EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred EEEEecCCCeEEEEcCCCCcE------EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcE
Confidence 888777778999999977652 11111 1 123456788886 6777776321 123
Q ss_pred EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784 283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT 362 (501)
Q Consensus 283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 362 (501)
|..++.. + ....+..+......++|+|+++++++
T Consensus 155 l~~~~~~-g---------------------------------------------~~~~~~~~~~~~~gi~~s~dg~~lv~ 188 (296)
T 3e5z_A 155 VFRLAPD-G---------------------------------------------TLSAPIRDRVKPNGLAFLPSGNLLVS 188 (296)
T ss_dssp EEEECTT-S---------------------------------------------CEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred EEEECCC-C---------------------------------------------CEEEeecCCCCCccEEECCCCCEEEE
Confidence 3333322 1 11222234556789999999998877
Q ss_pred EcCCc-EEEEecC-CCCC-CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCC
Q 010784 363 GGIGK-AMTWDIR-RSQD-AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEAD 438 (501)
Q Consensus 363 ~~~d~-i~iwd~~-~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 438 (501)
.+.++ |.+|++. .++. . ....+..+...+..++++++ +++++. ++.|.+||.. ++.+..+. .+.
T Consensus 189 ~~~~~~i~~~~~~~~g~~~~----~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-----~~~ 256 (296)
T 3e5z_A 189 DTGDNATHRYCLNARGETEY----QGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-----TPQ 256 (296)
T ss_dssp ETTTTEEEEEEECSSSCEEE----EEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-----CSS
T ss_pred eCCCCeEEEEEECCCCcCcC----CCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-----CCC
Confidence 77666 9999987 3321 0 01122234556778999999 877775 7889999986 77777773 233
Q ss_pred cceeeeEe-eccccEEEEee
Q 010784 439 ISTGCSAM-AVSGCRIVTAS 457 (501)
Q Consensus 439 ~~v~~~~~-s~~g~~l~s~~ 457 (501)
. +.+++| +|+++.|++++
T Consensus 257 ~-~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 257 T-TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp C-CCEEEEESTTSCEEEEEE
T ss_pred C-ceeEEEECCCCCEEEEEc
Confidence 4 888999 58999888887
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=7.7e-13 Score=121.65 Aligned_cols=258 Identities=9% Similarity=0.006 Sum_probs=172.1
Q ss_pred CCCceEEec--CCceeeecc------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 186 CDHSIRLWW--KGSCQRCFK------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 186 ~dg~i~vwd--~~~~~~~~~------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
.+++|.++| +++....+. ........+.+. ++.++++...++.|.+||..+++. +..+. .
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-----~~~lyv~~~~~~~v~viD~~t~~~------~~~i~-~ 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-----DGIGWIVVNNSHVIFAIDINTFKE------VGRIT-G 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-----TTEEEEEEGGGTEEEEEETTTCCE------EEEEE-C
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-----CCEEEEEEcCCCEEEEEECcccEE------EEEcC-C
Confidence 488999999 555544331 122345677763 455666666789999999998763 45554 3
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCC
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRT 334 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~ 334 (501)
......+++++ ++..+++...++.|.+||..+++................+..+......++++. ++.|.++|+.+
T Consensus 83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence 45678899987 566555555899999999998865433221110000114445555677777775 45899999999
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC----------c-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecC
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG----------K-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDP 402 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----------~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~ 402 (501)
++.+..+... .....+.++|+|++++++..+ + |.++|..+.+.. ..+... ......++++|
T Consensus 162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~------~~~~~~~g~~p~~la~~~ 234 (328)
T 3dsm_A 162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE------KQFKFKLGDWPSEVQLNG 234 (328)
T ss_dssp TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE------EEEECCTTCCCEEEEECT
T ss_pred CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE------EEEecCCCCCceeEEEec
Confidence 9888777653 345688999999988877654 5 999999886543 333221 23688999999
Q ss_pred C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-ccEEEEe----ecCCCceEEEeecc
Q 010784 403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-GCRIVTA----SYGEPGLLQFRDFS 470 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~----~~d~~g~i~~w~~~ 470 (501)
+ +.+..+.. .|.+||..+++....... .........++++|+ +.+.++. . .++.|.+||..
T Consensus 235 d~~~lyv~~~--~v~~~d~~t~~~~~~~~~---~~~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~ 301 (328)
T 3dsm_A 235 TRDTLYWINN--DIWRMPVEADRVPVRPFL---EFRDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ 301 (328)
T ss_dssp TSCEEEEESS--SEEEEETTCSSCCSSCSB---CCCSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred CCCEEEEEcc--EEEEEECCCCceeeeeee---cCCCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC
Confidence 7 54444323 899999998876432110 111356788999995 5555554 3 56899999987
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=2.3e-12 Score=118.50 Aligned_cols=261 Identities=8% Similarity=-0.019 Sum_probs=178.4
Q ss_pred CeeeEEEEecccccccceecc------cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee
Q 010784 130 SIQNIKIDNFLSESYYRATLS------DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC 201 (501)
Q Consensus 130 ~d~~i~vw~~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~ 201 (501)
.++.|.++|..++ +....+. ........+.+. ++.++++...++.|.+|| +++.+.+
T Consensus 15 ~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~--------------~~~lyv~~~~~~~v~viD~~t~~~~~~ 79 (328)
T 3dsm_A 15 SNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR--------------DGIGWIVVNNSHVIFAIDINTFKEVGR 79 (328)
T ss_dssp CCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE--------------TTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred CCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE--------------CCEEEEEEcCCCEEEEEECcccEEEEE
Confidence 4899999999985 4444331 122346777775 356777777789999999 6777777
Q ss_pred ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC-----CceeEEEEeecCCeEEEE
Q 010784 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE-----KPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s 276 (501)
+. .......++++ +++.++++...++.|.+||..++.. ...+.... .....+++. ++.++++
T Consensus 80 i~-~~~~p~~i~~~----~~g~lyv~~~~~~~v~~iD~~t~~~------~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~ 146 (328)
T 3dsm_A 80 IT-GFTSPRYIHFL----SDEKAYVTQIWDYRIFIINPKTYEI------TGYIECPDMDMESGSTEQMVQY--GKYVYVN 146 (328)
T ss_dssp EE-CCSSEEEEEEE----ETTEEEEEEBSCSEEEEEETTTTEE------EEEEECTTCCTTTCBCCCEEEE--TTEEEEE
T ss_pred cC-CCCCCcEEEEe----CCCeEEEEECCCCeEEEEECCCCeE------EEEEEcCCccccCCCcceEEEE--CCEEEEE
Confidence 75 34667889986 5665544444789999999988753 33333222 144566662 5666665
Q ss_pred Ee-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEeC------------CcEEEEEcCCCceEeeec
Q 010784 277 IS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASG------------SSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 277 ~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~i~~~d~~~~~~~~~~~ 342 (501)
.. .++.|.++|+.+++.+... .....+..+..+++. +++++. +.+.++|..+++....+.
T Consensus 147 ~~~~~~~v~viD~~t~~~~~~i------~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 147 CWSYQNRILKIDTETDKVVDEL------TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp ECTTCCEEEEEETTTTEEEEEE------ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred cCCCCCEEEEEECCCCeEEEEE------EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 54 4899999999988654432 223344555555543 444443 369999999988776665
Q ss_pred cC-CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe----cCCCcE
Q 010784 343 IC-KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG----RDDLRI 415 (501)
Q Consensus 343 ~~-~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g----s~dg~i 415 (501)
.. ......++++|+++.++++.. .|.+||..+++.. .. ..+.........++++|+ .++++. ..++.|
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~--~~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVP--VR--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCC--SS--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred cCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCcee--ee--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 32 246889999999888887765 7999999887643 11 112222456889999994 788876 678999
Q ss_pred EEEeCCCcccccccc
Q 010784 416 NIWETDTGMLANSLL 430 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~ 430 (501)
.+||.. ++.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88888884
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=9.4e-14 Score=141.58 Aligned_cols=248 Identities=7% Similarity=-0.072 Sum_probs=158.9
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEE-----EeeCCCceEEec--CCceeeeccCCCCce--EEEEeeecCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLV-----TSSCDHSIRLWW--KGSCQRCFKGHNGPV--STLSDKLLGDGS 221 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~-----s~~~dg~i~vwd--~~~~~~~~~~h~~~v--~~l~~s~~~~~~ 221 (501)
+|...+..++||| ||++|+ .|+.+.+|++|| +++.+. ..+...+ ..++|+ ++
T Consensus 118 ~~~~~~~~~~~SP-------------DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~ws----pD 178 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-------------DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWT----PD 178 (695)
T ss_dssp SSCEEEEEEEECT-------------TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEEC----TT
T ss_pred CCCEEEEEEEECC-------------CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEe----cC
Confidence 5666799999999 889998 555567899999 444331 1122222 678897 89
Q ss_pred CCEEEEeeCCCc-------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEE
Q 010784 222 GKILASGGEDAT-------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVR 284 (501)
Q Consensus 222 ~~~l~sg~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~ 284 (501)
|+.|+.++.|.. |++|++.++.. ...++.....|...+..+.++| ++++|+.++.++ .|.
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEE
Confidence 999999888776 99999987652 1113334445666788999998 667777666555 566
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
+|+..+++. ..+..+...+....+ ++|.+++.+.
T Consensus 256 ~~~~~~~~~---------------------------------------------~~l~~~~~~~~~~~~-~~g~l~~~s~ 289 (695)
T 2bkl_A 256 WKRPGEKDF---------------------------------------------RLLVKGVGAKYEVHA-WKDRFYVLTD 289 (695)
T ss_dssp EECTTCSSC---------------------------------------------EEEEECSSCCEEEEE-ETTEEEEEEC
T ss_pred EEcCCCCce---------------------------------------------EEeecCCCceEEEEe-cCCcEEEEEC
Confidence 665433321 112223334444555 5555444444
Q ss_pred ---CCc-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecCCeEEEEecCCCcEEEEeCC-CcccccccccCCCCCC
Q 010784 365 ---IGK-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDPYKIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEA 437 (501)
Q Consensus 365 ---~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~ 437 (501)
.+. |.+||+.+++.. ....+..+ ...+..++++.+.++++...|+..+||.+. +++....+.. ..
T Consensus 290 ~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----~~ 361 (695)
T 2bkl_A 290 EGAPRQRVFEVDPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQL----PG 361 (695)
T ss_dssp TTCTTCEEEEEBTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCC----SS
T ss_pred CCCCCCEEEEEeCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecC----CC
Confidence 235 999999775420 01223222 445788888855888888899998888665 4555555531 12
Q ss_pred CcceeeeEeeccccEEEEee--cCCCceEEEeeccCCcc
Q 010784 438 DISTGCSAMAVSGCRIVTAS--YGEPGLLQFRDFSNATC 474 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~~--~d~~g~i~~w~~~~~~~ 474 (501)
...+..++++|+++.++... ....+.|++||+..+..
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 45678889999998776332 11457899999877654
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=7e-13 Score=118.44 Aligned_cols=236 Identities=8% Similarity=-0.026 Sum_probs=159.9
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEE-EeeCCCceEEecCC-ceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLV-TSSCDHSIRLWWKG-SCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~-~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
...++++++ ++++++ +...++.|.+||.+ .....+ ..+...+.++++. ++++++++.. +
T Consensus 25 ~p~~i~~~~-------------~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~----~~g~l~v~~~-~ 86 (270)
T 1rwi_B 25 SPSGVAVDS-------------AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD----GAGTVYVTDF-N 86 (270)
T ss_dssp CEEEEEECT-------------TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC----TTCCEEEEET-T
T ss_pred CccceEECC-------------CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC----CCCCEEEEcC-C
Confidence 677888888 788777 55778999999832 222222 2333567788885 7788666655 8
Q ss_pred CcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
+.|.+||...... ..+. .....+..+++.+ ++.++++...++.|.+|+..+.....
T Consensus 87 ~~i~~~d~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~--------------- 143 (270)
T 1rwi_B 87 NRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTV--------------- 143 (270)
T ss_dssp TEEEEECTTCSCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEE---------------
T ss_pred CEEEEEeCCCceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEe---------------
Confidence 8999999876542 2222 2335678999987 66777777778889999754432100
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD 389 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 389 (501)
........+.+++++++|+++++...++ |.+||....... ....
T Consensus 144 -----------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~------~~~~ 188 (270)
T 1rwi_B 144 -----------------------------LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV------VLPF 188 (270)
T ss_dssp -----------------------------CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE------ECCC
T ss_pred -----------------------------eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE------eecc
Confidence 0011123456789999999887777665 999998765432 1122
Q ss_pred CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 390 GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 390 ~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.+...+..++++++ .++++...++.|.+|+........ .. ..+...+.+++++++|+++++.. .++.|++++
T Consensus 189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----~~~~~~p~~i~~~~~g~l~v~~~--~~~~v~~~~ 261 (270)
T 1rwi_B 189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----FTGLNTPLAVAVDSDRTVYVADR--GNDRVVKLT 261 (270)
T ss_dssp SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----CCSCSCEEEEEECTTCCEEEEEG--GGTEEEEEC
T ss_pred cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----cCCCCCceeEEECCCCCEEEEEC--CCCEEEEEc
Confidence 22366889999999 888887778999999986544332 21 12235678999999999777777 569999999
Q ss_pred ccCCc
Q 010784 469 FSNAT 473 (501)
Q Consensus 469 ~~~~~ 473 (501)
.....
T Consensus 262 ~~~~~ 266 (270)
T 1rwi_B 262 SLEHH 266 (270)
T ss_dssp CCGGG
T ss_pred CCCcc
Confidence 87654
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=5.4e-13 Score=119.01 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=162.2
Q ss_pred CCcEEEeecCCeeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc
Q 010784 120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS 197 (501)
Q Consensus 120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~ 197 (501)
..+.++++++.++.|.+||.++| +.+..+..+. ..+.++.++| +|+++++ .++.|..|| +++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~p-------------dG~ilvs--~~~~V~~~d~~G~ 66 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATK-------------AGEILFS--YSKGAKMITRDGR 66 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECT-------------TSCEEEE--CBSEEEEECTTSC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECC-------------CCCEEEe--CCCCEEEECCCCC
Confidence 35688999999999999999886 7778887776 5789999999 8898883 477899999 888
Q ss_pred eeeeccCCC-CceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeec
Q 010784 198 CQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGH 269 (501)
Q Consensus 198 ~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~ 269 (501)
.+..+..+. ..+.++.+. ++|+++++.+. ++.|..+|.+ ++. +..+. .+......+++.+
T Consensus 67 ~~W~~~~~~~~~~~~~~~~----~dG~~lv~~~~~~~~v~~vd~~-Gk~------l~~~~~~~~~~~~~~~~~~v~~~~- 134 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARIL----PDGNALVAWCGHPSTILEVNMK-GEV------LSKTEFETGIERPHAQFRQINKNK- 134 (276)
T ss_dssp EEEEEECCTTCEEEEEEEC----TTSCEEEEEESTTEEEEEECTT-SCE------EEEEEECCSCSSGGGSCSCCEECT-
T ss_pred EEEEEcCCCCccccccEEC----CCCCEEEEecCCCCEEEEEeCC-CCE------EEEEeccCCCCcccccccCceECC-
Confidence 888887653 467788875 89999999887 7777777753 332 22221 1212344556665
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
+++++++...++.|..||.. ++.+. ++... ..+.
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~-G~~~w--------------------------------------------~~~~~-~~~~ 168 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPN-GQLLN--------------------------------------------SVKLS-GTPF 168 (276)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEE--------------------------------------------EEECS-SCCC
T ss_pred CCCEEEEecCCCEEEEECCC-CCEEE--------------------------------------------EEECC-CCcc
Confidence 78899999999999999987 65322 22211 2344
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc------ccCeEEEEecCC-eEEEEecCC--------C
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH------VGSVTQLHMDPY-KIVTGGRDD--------L 413 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~-~~l~~gs~d--------g 413 (501)
++...++|+++++++.++ |..+|..+++.+ .++..+ -..+..++..++ .++++.+.. +
T Consensus 169 ~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~------w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 169 SSAFLDNGDCLVACGDAHCFVQLNLESNRIV------RRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK 242 (276)
T ss_dssp EEEECTTSCEEEECBTTSEEEEECTTTCCEE------EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE------EEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence 577789999999988887 999999987754 444322 123677888888 777665211 1
Q ss_pred cEEEEeC-CCcccccccc
Q 010784 414 RINIWET-DTGMLANSLL 430 (501)
Q Consensus 414 ~i~iwd~-~~~~~~~~~~ 430 (501)
..+++++ .+++.+-++.
T Consensus 243 ~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 243 HPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CCSEEEECTTSBEEEEEC
T ss_pred CceEEEECCCCCEEEEec
Confidence 3356665 4677666664
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=5.5e-14 Score=133.24 Aligned_cols=270 Identities=10% Similarity=-0.061 Sum_probs=162.4
Q ss_pred ecccccccceecccCCcc-----eeEEEeeccCcCcccccCCCCcCcEEEEeeCC-C--ceEEec-CCceeeeccCCCCc
Q 010784 138 NFLSESYYRATLSDHKAR-----ITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-H--SIRLWW-KGSCQRCFKGHNGP 208 (501)
Q Consensus 138 ~~~~~~~~~~~~~~h~~~-----V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~vwd-~~~~~~~~~~h~~~ 208 (501)
|..++ ..+..+..+... +..++|+| +|++|+..... | .|.+|| .+.....+..+...
T Consensus 16 d~~~g-~~~~~l~~~~~~~~~~~~~~~~~Sp-------------dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~ 81 (396)
T 3c5m_A 16 DSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQ-------------DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD 81 (396)
T ss_dssp CTTTC-CEEEECSCTTSCEECCCTTSCCBCT-------------TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB
T ss_pred cCCCC-cceEEEecCCCCccceeeecCcCCC-------------CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC
Confidence 55554 444555554333 66777777 88988776543 3 577778 33333344333333
Q ss_pred -eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEE
Q 010784 209 -VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287 (501)
Q Consensus 209 -v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd 287 (501)
...+.|+ ++|+.|+.++.++.|.+||+.+++. ......+.. +.+ ++..|+..+.+....+|.
T Consensus 82 ~~~~~~~s----pdg~~l~~~~~~~~l~~~d~~~~~~------~~~~~~~~~------~~~-~g~~l~~~~~~~~~~~~~ 144 (396)
T 3c5m_A 82 NTFGGFIS----TDERAFFYVKNELNLMKVDLETLEE------QVIYTVDEE------WKG-YGTWVANSDCTKLVGIEI 144 (396)
T ss_dssp CTTTCEEC----TTSSEEEEEETTTEEEEEETTTCCE------EEEEECCTT------EEE-EEEEEECTTSSEEEEEEE
T ss_pred ccccceEC----CCCCEEEEEEcCCcEEEEECCCCCc------EEEEecccc------cCC-CCCEEEeccCCccccccc
Confidence 3336786 8999999999999999999988653 223332332 444 456666666666555554
Q ss_pred CCCCccccceecccceecCCCceeeecCCCeEEEE------eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEE
Q 010784 288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA------SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLI 360 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l 360 (501)
... ....+.+.+.+. ....+.+||+.+++..... .+...+..+.|+| ++..|
T Consensus 145 ~~~--------------------~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l 203 (396)
T 3c5m_A 145 LKR--------------------DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTV 203 (396)
T ss_dssp EGG--------------------GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEE
T ss_pred ccc--------------------ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEE
Confidence 200 000011111111 1236888898887765444 4567789999999 78766
Q ss_pred EEEcC--C----c-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecCC-eEEEEecCC-----CcEEEEeCCCccc
Q 010784 361 CTGGI--G----K-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDPY-KIVTGGRDD-----LRINIWETDTGML 425 (501)
Q Consensus 361 ~~~~~--d----~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~-~~l~~gs~d-----g~i~iwd~~~~~~ 425 (501)
+..+. . . |.+||+..++. ..+..+ ...+..++|+|+ +.|+.++.+ +.|++||+.+++.
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 204 GFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred EEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 65542 2 4 88889875432 222222 335788999999 544433332 4499999988765
Q ss_pred ccccccCCCCCCCcceeeeEeec-cccEEEEeecC--------------CCceEEEeeccCCcc
Q 010784 426 ANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYG--------------EPGLLQFRDFSNATC 474 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d--------------~~g~i~~w~~~~~~~ 474 (501)
...... . ... +.|+| ||+++++++.+ .+..|++||+..+..
T Consensus 277 ~~l~~~---~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 277 EEVMVM---P----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EEEEEC---C----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EEeeeC---C----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 433211 1 122 88999 99988876421 347899999876553
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=6.1e-13 Score=135.97 Aligned_cols=249 Identities=10% Similarity=-0.004 Sum_probs=163.7
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC-----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
+|...+..++||| ||++|+.+..++ +|++|| +++.+.... ....+..++|+ ++|+
T Consensus 122 ~~~~~~~~~~~SP-------------Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~ws----pDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSE-------------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWT----HDGK 183 (710)
T ss_dssp TSCEEEEEEEECT-------------TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEEC----TTSS
T ss_pred CCCEEEEEEEECC-------------CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEE----eCCC
Confidence 4555788999999 889988776543 899999 555443222 22236778997 8999
Q ss_pred EEEEeeCCCc----------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----CCe
Q 010784 224 ILASGGEDAT----------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----DSK 282 (501)
Q Consensus 224 ~l~sg~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----dg~ 282 (501)
.|+.++.++. |++|++.++.. ...++.....|...+..+.|+| ++++|+.++. +..
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccE
Confidence 9998887766 99999987652 0112223333566678899998 6667766654 567
Q ss_pred EEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784 283 VRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS 356 (501)
Q Consensus 283 v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~ 356 (501)
|.+||+.+ +.. ....+..+...+.. .|+|+
T Consensus 261 l~~~d~~~~~~~~~~~~-------------------------------------------~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 261 LWYCDLQQESNGITGIL-------------------------------------------KWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp EEEEEGGGSSSSSCSSC-------------------------------------------CCEEEECSSSSCEE-EEEEE
T ss_pred EEEEECcccccccCCcc-------------------------------------------ceEEeeCCCCcEEE-EEecc
Confidence 88888765 210 01122223333333 47788
Q ss_pred CcEEEEEcC----Cc-EEEEecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCc--EEEEeCCCcccc
Q 010784 357 KSLICTGGI----GK-AMTWDIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLR--INIWETDTGMLA 426 (501)
Q Consensus 357 ~~~l~~~~~----d~-i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~--i~iwd~~~~~~~ 426 (501)
|..|+..+. .. |.+||+.++.. .....+..|.. .+..++|+++ .++++...|+. |.+|++.+++.+
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL 372 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE
Confidence 776665542 23 99999887531 01234444433 6788999966 88888878885 566777678777
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEe--ecCCCceEEEeeccCCc
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTA--SYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~--~~d~~g~i~~w~~~~~~ 473 (501)
..+. .+...+..++++|+++.++.. +....+.|+.||+..+.
T Consensus 373 ~~l~-----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 373 KIFP-----LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEC-----CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EecC-----CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7773 335678889999999766533 22256889999987766
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=7.3e-13 Score=135.39 Aligned_cols=239 Identities=10% Similarity=-0.032 Sum_probs=158.5
Q ss_pred CceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 113 HDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
+..++|||||+++|.+..+ ..|++||+.++ +.......+ ..+..++|+| ||+.|+.++.+
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~~-~~~~~~~wsp-------------Dg~~l~~~~~~ 191 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER-VKFSCMAWTH-------------DGKGMFYNAYP 191 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE-ECSCCEEECT-------------TSSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcccccC-cccceEEEEe-------------CCCEEEEEEEC
Confidence 6789999999999966543 39999999986 433322222 2367899999 88999988887
Q ss_pred Cc----------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-----CCcEEEEecc
Q 010784 188 HS----------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-----DATVRLWSLS 240 (501)
Q Consensus 188 g~----------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-----dg~i~iwd~~ 240 (501)
+. |++|+ ++. .+.....|...+..+.|+ ++|++|+.++. +..|.+||+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS----DDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC----TTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc----CCCCEEEEEEEccCCCccEEEEEECc
Confidence 66 89998 333 222223355667889997 89999887765 5689999998
Q ss_pred C------CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC---CeEEEEECCCCccccceecccceecCCCcee
Q 010784 241 S------SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 241 ~------~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
+ +.. ....+..+...+.. .|+++++.+++.+..+ +.|.+||+.++...
T Consensus 268 ~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----------------- 324 (710)
T 2xdw_A 268 QESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES----------------- 324 (710)
T ss_dssp GSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------
T ss_pred ccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------
Confidence 6 321 13445555555554 4676444444444332 36888888765310
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC--CcEEEEEEcCCCcEEEEEcCCc---EEEEecCCCCCCCCCCCcc
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK--PILHSFSIMPSKSLICTGGIGK---AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~ 386 (501)
....+..|. ..+..+.|++++.++++...++ |.+||+.+++.. .
T Consensus 325 -------------------------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~------~ 373 (710)
T 2xdw_A 325 -------------------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL------K 373 (710)
T ss_dssp -------------------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE------E
T ss_pred -------------------------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE------E
Confidence 001122222 3577889988888888888665 667787665432 5
Q ss_pred cccCcccCeEEEEecCC--eEEEEec---CCCcEEEEeCCCcc
Q 010784 387 ELDGHVGSVTQLHMDPY--KIVTGGR---DDLRINIWETDTGM 424 (501)
Q Consensus 387 ~~~~h~~~v~~l~~~~~--~~l~~gs---~dg~i~iwd~~~~~ 424 (501)
.+..+.+.+..+.++|+ .++++.+ ..++|.+||+.+++
T Consensus 374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 56666778889999987 4444432 45789999998877
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=2.3e-11 Score=110.24 Aligned_cols=273 Identities=7% Similarity=-0.006 Sum_probs=183.0
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
..+.+++++++|.++++...++.|.+++.. +......+..+...+.++++.+ +++++++...++.|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-------------~g~l~v~~~~~~~v 85 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-------------LGDIWFTENGANKI 85 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-------------TSCEEEEETTTTEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-------------CCCEEEEecCCCeE
Confidence 358899999999988888778899999977 3222222334446788999987 78888877778889
Q ss_pred EEec-CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 191 RLWW-KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 191 ~vwd-~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
..+| .++. ..+ ......+.++++. +++.++++...++.|..+|.. +.. ....+......+..+++.
T Consensus 86 ~~~d~~g~~-~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 86 GKLSKKGGF-TEYPLPQPDSGPYGITEG----LNGDIWFTQLNGDRIGKLTAD-GTI-----YEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp EEECTTSCE-EEEECSSTTCCEEEEEEC----STTCEEEEETTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEEC
T ss_pred EEECCCCCe-EEecCCCCCCCCccceEC----CCCCEEEEccCCCeEEEECCC-CCE-----EEccCCCCCCCceeEEEC
Confidence 9998 5333 322 2234678888885 788888877768899999987 432 112233344567889998
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
+ +++++++...++.|..+|. +++... .....+...
T Consensus 155 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------------------------~~~~~~~~~ 189 (300)
T 2qc5_A 155 S-DNALWFTENQNNSIGRITN-TGKLEE-------------------------------------------YPLPTNAAA 189 (300)
T ss_dssp T-TSSEEEEETTTTEEEEECT-TCCEEE-------------------------------------------EECSSTTCC
T ss_pred C-CCCEEEEecCCCeEEEECC-CCcEEE-------------------------------------------eeCCCCCCC
Confidence 6 5666666666788999987 442210 001122356
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
+..++++++|+++++...++ |.+||. +++.. ...+..+...+.+++++++ +++++...++.|..|+. +++.
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-----EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-----EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence 78899999998888777666 999998 33321 0112234566889999998 88777666789999998 4543
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
. .+.. ......+.+++++++|++.++.. +.|..++
T Consensus 263 ~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~----~~i~~~~ 297 (300)
T 2qc5_A 263 Q-EYQL---QTENAEPHGITFGKDGSVWFALK----CKIGKLN 297 (300)
T ss_dssp E-EEEC---CSTTCCCCCEEECTTSCEEEECS----SEEEEEE
T ss_pred E-EEEC---CccCCccceeEeCCCCCEEEEcc----CceEEeC
Confidence 3 2211 11234578899999998666542 2455554
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=4.7e-13 Score=123.62 Aligned_cols=230 Identities=7% Similarity=-0.023 Sum_probs=158.4
Q ss_pred cCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 177 TENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++..++..+.++.++.| .+.....+..+...+.+++|+ +++++++++..++.|.+||..++.. ......
T Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~~~~~~~i~~~d~~~~~~------~~~~~~ 84 (333)
T 2dg1_A 16 KSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFD----RQGQLFLLDVFEGNIFKINPETKEI------KRPFVS 84 (333)
T ss_dssp GGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEEC----TTSCEEEEETTTCEEEEECTTTCCE------EEEEEC
T ss_pred CccceeEEeecccCccc-ccceeEEEeccCccccCcEEC----CCCCEEEEECCCCEEEEEeCCCCcE------EEEeeC
Confidence 77778877889999999 555666666777778999996 7888888888899999999987652 222224
Q ss_pred CCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
+...+.++++++ +++++++...+ +.|.+||..++.....
T Consensus 85 ~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~------------------------------------ 127 (333)
T 2dg1_A 85 HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDI------------------------------------ 127 (333)
T ss_dssp SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEE------------------------------------
T ss_pred CCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEE------------------------------------
Confidence 567899999997 67777776666 6899999877642100
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K 404 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~ 404 (501)
.....+...+..++++|+|+++++... .+ |..+|...++. ..+..+...+..++|+|+ +
T Consensus 128 ------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 128 ------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-------TPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-------EEEEEEESSEEEEEECTTSS
T ss_pred ------EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-------EEeecCCCcccceEECCCCC
Confidence 000012456889999999998887764 23 77777654332 222223445789999999 5
Q ss_pred -EEEEecCCCcEEEEeCCC-cccccccc---cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 405 -IVTGGRDDLRINIWETDT-GMLANSLL---CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 405 -~l~~gs~dg~i~iwd~~~-~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++++.+.++.|.+||+.+ +..+..+. .....+ ...+..++++++|+++++.. .++.|.+|+..
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~ 262 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence 666666788999999964 43332210 000011 13567899999999888776 55899999874
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=4.2e-12 Score=115.07 Aligned_cols=240 Identities=7% Similarity=-0.041 Sum_probs=165.3
Q ss_pred EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.+.........++|++++. +++++..++.|..|+..++ ...+..+...+.++++++ +|+++++
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~-------------dg~l~v~ 85 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNK-------------QGHLIAC 85 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECT-------------TCCEEEE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECC-------------CCcEEEE
Confidence 3334445578999999997 7788888999999999864 556667778899999998 7888888
Q ss_pred eeCCCceEEec--CCceeeeccC----CCCceEEEEeeecCCCCCCEEEE----eeC-------------CCcEEEEecc
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKG----HNGPVSTLSDKLLGDGSGKILAS----GGE-------------DATVRLWSLS 240 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~----h~~~v~~l~~s~~~~~~~~~l~s----g~~-------------dg~i~iwd~~ 240 (501)
...++.|.+|| +++....... ....+..+++. ++|+++++ |.. .+.|..++..
T Consensus 86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d----~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA----PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC----TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC----CCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 77788999999 4443322221 12345678885 88998887 331 2344444443
Q ss_pred CCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC-CCccccceecccceecCCCceeeecCCC-e
Q 010784 241 SSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHES-M 318 (501)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 318 (501)
+. ...+..+......++|+| +++.+++.+.++.|.+||+. +++........ ....+.+..+.++++ .
T Consensus 162 -g~-------~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 162 -GT-------LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp -SC-------EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSC
T ss_pred -CC-------EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCC
Confidence 22 334445666778999998 66666888888999999987 44320111111 112334455555543 3
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE-cCCCcEEEEEcCCcEEEEecCCCC
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI-MPSKSLICTGGIGKAMTWDIRRSQ 377 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~~d~i~iwd~~~~~ 377 (501)
++++.++.|.+||.. ++.+..+..+.. +.+++| .|+++.|++++.+++..++..+.+
T Consensus 231 l~v~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~ 288 (296)
T 3e5z_A 231 IWASAGDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG 288 (296)
T ss_dssp EEEEETTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred EEEEcCCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence 566667799999986 777777777766 899999 589988888888877777777643
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=1e-11 Score=121.66 Aligned_cols=296 Identities=10% Similarity=0.036 Sum_probs=192.1
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecc--cccccceecccCCcceeEEEee----ccCcCcccccCCCCcCcEEEEe
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFL--SESYYRATLSDHKARITCMRLF----PLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~--~~~~~~~~~~~h~~~V~~~~~~----~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
..+..+.++|||+++.+++.++.|.+||+. ++ +.+..+.... ....++|+ | +|++++++
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G~-~P~~ia~s~~~~p-------------DGk~l~v~ 261 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGS-EARSIETSKMEGW-------------EDKYAIAG 261 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECCS-EEEEEEECCSTTC-------------TTTEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecCC-CCceeEEccccCC-------------CCCEEEEE
Confidence 346789999999999988899999999995 53 5666665433 35789999 6 78877766
Q ss_pred eC-CCceEEec--CCceeeeccC----------C-CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccc
Q 010784 185 SC-DHSIRLWW--KGSCQRCFKG----------H-NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQAL 250 (501)
Q Consensus 185 ~~-dg~i~vwd--~~~~~~~~~~----------h-~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 250 (501)
+. +++|.|+| +.+.+..+.. | ...+..+.+++ ....++++...+|.|.++|...... ..
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~---~~~~~vv~~~~~g~v~~vd~~~~~~----~~ 334 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH---YRPEFIVNVKETGKILLVDYTDLNN----LK 334 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS---SSSEEEEEETTTTEEEEEETTCSSE----EE
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC---CCCEEEEEecCCCeEEEEecCCCcc----ce
Confidence 65 59999999 5666655432 1 12567777761 2345666667789999999876542 01
Q ss_pred eeeccCCCCceeEEEEeecCCeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceee-ecCCCeEEEEe--C-C
Q 010784 251 KATLYGHEKPIKLMSVAGHKSFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIAS--G-S 325 (501)
Q Consensus 251 ~~~~~~~~~~v~~l~~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~ 325 (501)
+..+ ........+.|+| +++++++ ...++.|.++|+.+++.+.....-....+.+.-..+ ......++++. + +
T Consensus 335 v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 335 TTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 412 (567)
T ss_dssp EEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred eeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCC
Confidence 2222 2334566788998 5666554 456889999999998765443220222222222222 22223344443 3 5
Q ss_pred cEEEEEcCC-------CceEeeeccCCCcEEEEEEcCCCcEEEEEcC-------C-cEEEEecCCCCCCCCCCCccc---
Q 010784 326 SVVTIDLRT-------MQKVMTPAICKPILHSFSIMPSKSLICTGGI-------G-KAMTWDIRRSQDAVKPQPMAE--- 387 (501)
Q Consensus 326 ~i~~~d~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------d-~i~iwd~~~~~~~~~~~~~~~--- 387 (501)
.|.++|..+ .+.+.++......-..+..+|+++++.+... . .|.++|+.+.+.-.....+..
T Consensus 413 ~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~ 492 (567)
T 1qks_A 413 SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 492 (567)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred eEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc
Confidence 899999987 5667777765444355778999998888662 2 499999987621000001111
Q ss_pred -----ccCcccCeEEEEecCC--eEEEEec----CCCcEEEEeCCCcccccccc
Q 010784 388 -----LDGHVGSVTQLHMDPY--KIVTGGR----DDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 388 -----~~~h~~~v~~l~~~~~--~~l~~gs----~dg~i~iwd~~~~~~~~~~~ 430 (501)
+..-...+..+.|+|+ .++++.- .++.|.|+|..+++++.++.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 493 AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp HHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 1112346889999998 6666532 37999999999999888884
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=3e-12 Score=117.61 Aligned_cols=287 Identities=8% Similarity=-0.070 Sum_probs=184.7
Q ss_pred eeCCcEEEeecCC-----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-------
Q 010784 118 LDNNDIFSTQGSS-----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS------- 185 (501)
Q Consensus 118 ~~~~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------- 185 (501)
..|++..+..... ++.|.+.|..++ +.+.++..-..+ . ++++| +|++++.++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~sp-------------DG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVAD-------------DGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT-EEEEEEEECSSC-E-EEECT-------------TSSCEEEEEEEEEETT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC-eEEEEEECCCCC-c-EEECC-------------CCCEEEEEcccccccc
Confidence 3566655544332 689999999985 777777654555 4 99999 788877765
Q ss_pred ---CCCceEEec--CCceeeeccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccce
Q 010784 186 ---CDHSIRLWW--KGSCQRCFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 186 ---~dg~i~vwd--~~~~~~~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~ 251 (501)
.++.|.+|| +.+.+..+... ...-..+.|+ ++|++++.+.. ++.|.++|+.+++ .+
T Consensus 104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s----pDGk~lyVan~~~~~~VsVID~~t~~------vv 173 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT----PDGKTLLFYQFSPAPAVGVVDLEGKA------FK 173 (386)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC----TTSSEEEEEECSSSCEEEEEETTTTE------EE
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc----CCCCEEEEEEcCCCCeEEEEECCCCc------EE
Confidence 367899999 66666665321 1234567886 89999888864 6899999999976 35
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCcee--eec---CCCeEEEEeCC
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVD--MKC---HESMLYIASGS 325 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~ 325 (501)
.++... + +..+.|.+...+++.+.||.+.+.++.+ ++.... . ...+........ ..+ .+...+++.++
T Consensus 174 ~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~-~-~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g 247 (386)
T 3sjl_D 174 RMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-H-TEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 247 (386)
T ss_dssp EEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE-E-CCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred EEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEe-e-cceeccccccccccceeEcCCCcEEEEeCCC
Confidence 555321 1 1223344566778889999999999987 443211 1 111111111111 122 22334555667
Q ss_pred cEEEEEcCCCce--Eeeec---------c-CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCC
Q 010784 326 SVVTIDLRTMQK--VMTPA---------I-CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 326 ~i~~~d~~~~~~--~~~~~---------~-~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~ 382 (501)
.++++|+.+... +..+. + ..+....++++++++.++.... ++ |.++|+.+.+.+
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~--- 324 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--- 324 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE---
Confidence 999999976542 22221 0 1122334777898877776542 24 999999997654
Q ss_pred CCcccccCcccCeEEEEecCC-e--EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-K--IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS 449 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~--~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 449 (501)
..+.. ...+.+|+++++ + ++++...++.|.++|..+++.+.++.. ...-+.|.+++|
T Consensus 325 ---~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~------~~~p~~l~~s~d 384 (386)
T 3sjl_D 325 ---AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ------LGHGPQVITTAD 384 (386)
T ss_dssp ---EEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC------CCSSCCEEEECC
T ss_pred ---EEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC------CCCCceeEECCc
Confidence 55543 346889999999 4 455555689999999999999999853 233455667666
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=3.8e-12 Score=113.52 Aligned_cols=220 Identities=8% Similarity=-0.052 Sum_probs=157.1
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
.+++|++++.|+.|.+|| +++.+..+..+. ..+.++.++ ++|+++++ .++.|..||. +++ .+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~----pdG~ilvs--~~~~V~~~d~-~G~------~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT----KAGEILFS--YSKGAKMITR-DGR------ELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC----TTSCEEEE--CBSEEEEECT-TSC------EEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC----CCCCEEEe--CCCCEEEECC-CCC------EEEE
Confidence 478999999999999999 888888887765 468888886 88998883 4778999999 565 3555
Q ss_pred ccCC-CCceeEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 254 LYGH-EKPIKLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 254 ~~~~-~~~v~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
+..+ ...+.++.+.+ +++++++.+. ++.|..+|. +++.+....
T Consensus 71 ~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~--------------------------------- 115 (276)
T 3no2_A 71 IAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTE--------------------------------- 115 (276)
T ss_dssp EECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEE---------------------------------
T ss_pred EcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEe---------------------------------
Confidence 5544 34677888887 7888888877 778887775 454322211
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG 409 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g 409 (501)
+... ...+......+++.++|+++++...++ |.+||.. ++.+ .++... ..+.++...++ .+++++
T Consensus 116 ~~~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~------w~~~~~-~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 116 FETG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL------NSVKLS-GTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp ECCS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE------EEEECS-SCCCEEEECTTSCEEEEC
T ss_pred ccCC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE------EEEECC-CCccceeEcCCCCEEEEe
Confidence 1000 001111233456789999999999888 9999988 7654 555543 34566777887 888887
Q ss_pred cCCCcEEEEeCCCcccccccccCCCC-CCCcceeeeEeeccccEEEEee
Q 010784 410 RDDLRINIWETDTGMLANSLLCNYPE-EADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 410 s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
+.+++|..+|..+|+.+.++...... .....+..+...++|..+++..
T Consensus 183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 78889999999999998888532111 1223467888889999888874
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=1.5e-12 Score=132.68 Aligned_cols=237 Identities=11% Similarity=-0.084 Sum_probs=154.2
Q ss_pred CCceEEeeCCcEEEe-----ecCCeeeEEEEecccccccceecccCCcce--eEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 112 PHDHILLDNNDIFST-----QGSSIQNIKIDNFLSESYYRATLSDHKARI--TCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+..++|||||+++| .|+.+..|++||+.++ +.+. ..+...+ ..++|+| ||+.|+.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg-~~~~--~~~~~~~~~~~~~wsp-------------Dg~~l~~~ 185 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG-EWSK--VDVIEGGKYATPKWTP-------------DSKGFYYE 185 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC-CBCS--SCCBSCCTTCCCEECT-------------TSSEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC-CCcC--CcccCcccccceEEec-------------CCCEEEEE
Confidence 478899999999999 7777899999999986 3321 1122223 6789999 88999999
Q ss_pred eCCCc-------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC----cEEEEeccC
Q 010784 185 SCDHS-------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA----TVRLWSLSS 241 (501)
Q Consensus 185 ~~dg~-------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg----~i~iwd~~~ 241 (501)
+.|.. |++|+ ++. .+.....|...+..+.|+ ++|++|+.++.++ .|.+|+..+
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S----pDG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS----RDGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC----TTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC----CCCCEEEEEEeCCCCceEEEEEcCCC
Confidence 88776 99998 333 333344566678899997 8999988877666 666665544
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
+. ...+..+...+....+ + ++.+++.+. .++.|.+||+.+++....
T Consensus 262 ~~-------~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~---------------------- 310 (695)
T 2bkl_A 262 KD-------FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASW---------------------- 310 (695)
T ss_dssp SS-------CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGC----------------------
T ss_pred Cc-------eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCC----------------------
Confidence 33 3344445555555555 4 444444443 257899999876532000
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCc-ccC
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGH-VGS 394 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h-~~~ 394 (501)
...+..+ ...+..++++ ++.++++...++ .++|.+. .++. ...+..+ .+.
T Consensus 311 -------------------~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~------~~~l~~~~~~~ 364 (695)
T 2bkl_A 311 -------------------KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP------VRTVQLPGVGA 364 (695)
T ss_dssp -------------------EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE------EEECCCSSSSE
T ss_pred -------------------eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe------eEEecCCCCeE
Confidence 0111112 3457778887 777888888777 6766554 2222 2344443 566
Q ss_pred eEEEEecCC--eEEEEe---cCCCcEEEEeCCCccc
Q 010784 395 VTQLHMDPY--KIVTGG---RDDLRINIWETDTGML 425 (501)
Q Consensus 395 v~~l~~~~~--~~l~~g---s~dg~i~iwd~~~~~~ 425 (501)
+..+.++|+ .++++. ...++|++||+.+++.
T Consensus 365 v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 365 ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 778888887 444333 2357899999988763
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=2.1e-12 Score=120.01 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=143.9
Q ss_pred CCCceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 111 KPHDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
..+..++|+|||.+++..+.+ ..+.+|++.++ +..... .+.. +..++|+| +|+.|+.++
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~-~~~~-~~~~~wsp-------------dg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKIL-EAKN-IRSLEWNE-------------DSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEE-EESE-EEEEEECT-------------TSSEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEE-cCCC-ccceeECC-------------CCCEEEEEE
Confidence 457889999999999877653 34777787764 433333 3334 99999999 788888776
Q ss_pred CC---------------------------CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC----
Q 010784 186 CD---------------------------HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA---- 232 (501)
Q Consensus 186 ~d---------------------------g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg---- 232 (501)
.+ ..|.+|| .++.+..+.. . .+..+.|+ ++| +++++..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s----pdg-~~~~~~~~~~~~~ 195 (347)
T 2gop_A 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH----RDK-IVVNVPHREIIPQ 195 (347)
T ss_dssp ECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE----TTE-EEEEEECCCSSCC
T ss_pred ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC----CCe-EEEEEeccccccc
Confidence 42 5688888 4444245544 3 78889997 788 888776542
Q ss_pred ---cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC--------eEEEEECCCCccccceeccc
Q 010784 233 ---TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS--------KVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 233 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg--------~v~vwd~~~~~~~~~~~~~~ 301 (501)
...+|.++++. ...+..+ ..+..+ +| +++.|+.++.++ .|.+|| +++
T Consensus 196 ~~~~~~l~~~d~~~-------~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--------- 253 (347)
T 2gop_A 196 YFKFWDIYIWEDGK-------EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE--------- 253 (347)
T ss_dssp SSCCEEEEEEETTE-------EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC---------
T ss_pred ccccccEEEeCCCc-------eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc---------
Confidence 45666555322 2233333 444443 77 666676666442 455555 221
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE-EEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS-FSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
.......+...+.. +.|+ ++ ++++++.++ +++| +.+++.
T Consensus 254 -----------------------------------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~- 294 (347)
T 2gop_A 254 -----------------------------------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI- 294 (347)
T ss_dssp -----------------------------------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-
T ss_pred -----------------------------------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-
Confidence 11222344566776 8999 88 888888777 9999 874321
Q ss_pred CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcE-EEEeCCCcc
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRI-NIWETDTGM 424 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i-~iwd~~~~~ 424 (501)
..+..+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 295 ------~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 295 ------KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ------EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES-SS
T ss_pred ------EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC-Cc
Confidence 33334467899999999 888777777665 777776 44
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.3e-11 Score=112.89 Aligned_cols=243 Identities=7% Similarity=0.017 Sum_probs=154.6
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEE-------eeCCCceEEec-CCceeeeccC-----CCCceEEEEeeecC
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVT-------SSCDHSIRLWW-KGSCQRCFKG-----HNGPVSTLSDKLLG 218 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-------~~~dg~i~vwd-~~~~~~~~~~-----h~~~v~~l~~s~~~ 218 (501)
.-....+++|.+ +++++++ +..++.|.+|| .......+.. +...+.++++.
T Consensus 16 ~~~~~~~~~~~~-------------~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~--- 79 (314)
T 1pjx_A 16 DIPGAEGPVFDK-------------NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--- 79 (314)
T ss_dssp CCTTCEEEEECT-------------TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC---
T ss_pred cCCCccCceECC-------------CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe---
Confidence 334567889987 7888888 67789999998 3323333322 45678899985
Q ss_pred CCC-CCEEEEeeCCCcEEEEeccCCCccccccceee-cc---C-CCCceeEEEEeecCCeEEEEEeCC------------
Q 010784 219 DGS-GKILASGGEDATVRLWSLSSSGKRGQQALKAT-LY---G-HEKPIKLMSVAGHKSFLLVTISKD------------ 280 (501)
Q Consensus 219 ~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~-~~~~v~~l~~~~~~~~~l~s~s~d------------ 280 (501)
++ ++++++. ..+.|.+||.. +.. ... .. . ....+.++++.+ +++++++...+
T Consensus 80 -~~~g~l~v~~-~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 80 -RDANQLFVAD-MRLGLLVVQTD-GTF------EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp -SSSSEEEEEE-TTTEEEEEETT-SCE------EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTS
T ss_pred -cCCCcEEEEE-CCCCEEEEeCC-CCE------EEEEeccCCCccccCCcCEEECC-CCCEEEEecCccccccccccccc
Confidence 66 6555544 44478899987 542 111 11 1 123578899987 66666666544
Q ss_pred ---CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc---
Q 010784 281 ---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM--- 354 (501)
Q Consensus 281 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~--- 354 (501)
+.|..+|.. ++ .. .+..+......++++
T Consensus 150 ~~~~~l~~~~~~-g~--------------------------------------------~~-~~~~~~~~~~~i~~~~~~ 183 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQ--------------------------------------------MI-QVDTAFQFPNGIAVRHMN 183 (314)
T ss_dssp SSCEEEEEECTT-SC--------------------------------------------EE-EEEEEESSEEEEEEEECT
T ss_pred CCCCeEEEECCC-CC--------------------------------------------EE-EeccCCCCcceEEEeccc
Confidence 344444433 21 11 111122345788899
Q ss_pred -CCCcEEEEE-cCCc-EEEEecC-CCCCCCCCCCcccccCcc-cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccc
Q 010784 355 -PSKSLICTG-GIGK-AMTWDIR-RSQDAVKPQPMAELDGHV-GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANS 428 (501)
Q Consensus 355 -~~~~~l~~~-~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~ 428 (501)
|+++.++.+ ..++ |.+||.. .++.. .......+..+. ..+..++++++ .++++...++.|.+||..+++.+..
T Consensus 184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~ 262 (314)
T 1pjx_A 184 DGRPYQLIVAETPTKKLWSYDIKGPAKIE-NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR 262 (314)
T ss_dssp TSCEEEEEEEETTTTEEEEEEEEETTEEE-EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCCccc-cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE
Confidence 998655444 4555 9999986 33210 001123334443 56788999998 8888766788999999987877766
Q ss_pred cccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 429 LLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+. .+...+.+++|+++|+.|+.++. .++.|..|++...+
T Consensus 263 ~~-----~~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 263 IR-----CPFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQRNG 301 (314)
T ss_dssp EE-----CSSSCEEEEEECTTSSEEEEEET-TTTEEEEEECSSCB
T ss_pred Ee-----CCCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCCCCC
Confidence 63 23467889999999996665543 45789999987644
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=2e-11 Score=111.52 Aligned_cols=240 Identities=10% Similarity=0.042 Sum_probs=157.0
Q ss_pred cCCCCceEEeeCCcEEEee-------cCCeeeEEEEecccccccceecc----cCCcceeEEEeeccCcCcccccCCCCc
Q 010784 109 VAKPHDHILLDNNDIFSTQ-------GSSIQNIKIDNFLSESYYRATLS----DHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~-------g~~d~~i~vw~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
.-..+.++++++++.++++ +..++.|.+|+..++ +...... ++...+.++++++ +
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~-------------~ 81 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDR-------------D 81 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECS-------------S
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEec-------------C
Confidence 3345789999999988888 677889999998764 3322111 2556789999988 6
Q ss_pred -CcEEEEeeCCCceEEec-CCceeeec-cC-----CCCceEEEEeeecCCCCCCEEEEeeCC---------------CcE
Q 010784 178 -ENVLVTSSCDHSIRLWW-KGSCQRCF-KG-----HNGPVSTLSDKLLGDGSGKILASGGED---------------ATV 234 (501)
Q Consensus 178 -~~~l~s~~~dg~i~vwd-~~~~~~~~-~~-----h~~~v~~l~~s~~~~~~~~~l~sg~~d---------------g~i 234 (501)
++++++.. .+.|.+|| .++ ...+ .. ....+.++++. ++|+++++...+ +.|
T Consensus 82 ~g~l~v~~~-~~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d----~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 82 ANQLFVADM-RLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFD----YEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSEEEEEET-TTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEEC----TTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCcEEEEEC-CCCEEEEeCCCC-EEEEEeccCCCccccCCcCEEEC----CCCCEEEEecCcccccccccccccCCCCeE
Confidence 66566554 44688898 533 3332 11 12357889985 788887776654 456
Q ss_pred EEEeccCCCccccccceeeccCCCCceeEEEEe----ecCCe-EEEEEeCCCeEEEEECC-CCccccceecccceecCCC
Q 010784 235 RLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA----GHKSF-LLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~-~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~ 308 (501)
..++.. +. ...+..+......++++ + +++ ++++...++.|.+||.. +++...
T Consensus 156 ~~~~~~-g~-------~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------- 213 (314)
T 1pjx_A 156 YCFTTD-GQ-------MIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN------------- 213 (314)
T ss_dssp EEECTT-SC-------EEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE-------------
T ss_pred EEECCC-CC-------EEEeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc-------------
Confidence 666654 32 12222233345788888 7 554 44555667899999875 221100
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC-CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK-PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
.+....+..+. ..+..++++++|+++++...++ |.+||..+++.. .
T Consensus 214 --------------------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~------~ 261 (314)
T 1pjx_A 214 --------------------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK------M 261 (314)
T ss_dssp --------------------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS------E
T ss_pred --------------------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe------E
Confidence 00111222233 5577899999999888876555 999998865543 4
Q ss_pred cccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCC
Q 010784 387 ELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDT 422 (501)
Q Consensus 387 ~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~ 422 (501)
.+..+...+.+++++|+ + ++++...++.|..|++..
T Consensus 262 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 262 RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 45555678999999998 5 777776778999999864
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=3e-12 Score=131.45 Aligned_cols=250 Identities=13% Similarity=0.010 Sum_probs=152.3
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
+|...+..++||| ||++|+.++.+ .+|++|| +++.+.. ..+...+..++|+ ++ +
T Consensus 160 ~~~~~~~~~~~SP-------------DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~ws----pD-~ 220 (741)
T 1yr2_A 160 DGATALDAWAASD-------------DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWL----GN-D 220 (741)
T ss_dssp ---EEEEEEEECT-------------TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEES----TT-S
T ss_pred CCCEEEEeEEECC-------------CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEE----CC-C
Confidence 3445788999999 88988877654 4699999 4444332 2122223577887 78 8
Q ss_pred EEEEeeCCCc--------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEE
Q 010784 224 ILASGGEDAT--------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVR 284 (501)
Q Consensus 224 ~l~sg~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~ 284 (501)
.|+.++.++. |++|++.++.. ...++.....+...+..+.|+| ++++|+..+.++ .|+
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp EEEEEECCCC--------CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEE
T ss_pred EEEEEEecCcccccccccCCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEE
Confidence 8887776554 88999876542 0112223333444578899998 677777666443 677
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
+||+.++.. +....+..+...+... ++|+|..|+..+
T Consensus 298 ~~d~~~~~~------------------------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s 334 (741)
T 1yr2_A 298 VARVTNGKI------------------------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVS 334 (741)
T ss_dssp EEEEETTEE------------------------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred EEECCCCCC------------------------------------------cccEEecCCCCceEEE-EeccCCEEEEEE
Confidence 777765410 0011122223333333 247777776665
Q ss_pred C----Cc-EEEEecCCCC-CCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCC-CcccccccccCCCCCC
Q 010784 365 I----GK-AMTWDIRRSQ-DAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEA 437 (501)
Q Consensus 365 ~----d~-i~iwd~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~ 437 (501)
+ +. |.+||+.++. .. ...+..+...+..+.++.+.++++...|+..+||.+. +++....+.. ..
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----~~ 405 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRF-----DTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL----PG 405 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEE-----EEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC----SS
T ss_pred CCCCCCCEEEEEeCCCCcccc-----EEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC----CC
Confidence 3 33 9999987742 11 1223344455777888855888888889988777654 4555555531 12
Q ss_pred CcceeeeEeeccccEEEEe--ecCCCceEEEeeccCCcc
Q 010784 438 DISTGCSAMAVSGCRIVTA--SYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~--~~d~~g~i~~w~~~~~~~ 474 (501)
...+..+.++|+++.|+.. +....+.|+.||+..+..
T Consensus 406 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 406 IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4568889999998866532 222457899999876553
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1.4e-10 Score=107.95 Aligned_cols=257 Identities=7% Similarity=-0.089 Sum_probs=164.6
Q ss_pred eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCceee
Q 010784 133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQR 200 (501)
Q Consensus 133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~~ 200 (501)
.|.++|..++ +.+.++..-..+ .++++| ||++++.+. .++.|.+|| +.+.+.
T Consensus 48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~sp-------------Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAH-------------SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA 111 (373)
T ss_pred EEEEEECCCC-eEEEEecCCCCC--CeEECC-------------CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence 8899999885 666666544444 889998 888888875 367899999 455555
Q ss_pred eccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceee-ccCCCCceeEEEEeecC
Q 010784 201 CFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKAT-LYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 201 ~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~ 270 (501)
.+... ...-..+.|+ ++|++|+.+.. ++.|.++| .+++ .+.. +.. .. ++.+.+..
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~s----pDG~~l~v~n~~~~~~v~viD-~t~~------~~~~~i~~-~~---~~~~~~~~ 176 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANT----PNNADLLFFQFAAGPAVGLVV-QGGS------SDDQLLSS-PT---CYHIHPGA 176 (373)
T ss_pred EEECCCccccccCCCccceEEC----CCCCEEEEEecCCCCeEEEEE-CCCC------EEeEEcCC-Cc---eEEEEeCC
Confidence 44321 1233477886 89999998874 47899999 8775 3444 332 22 24455555
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee----eecCCCe-EEEEeCCcEEEEEcCCCce--Eeeecc
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD----MKCHESM-LYIASGSSVVTIDLRTMQK--VMTPAI 343 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~i~~~d~~~~~~--~~~~~~ 343 (501)
...+++.+.||.+.++|. +++........... ....+.. ....... .++...+.+.+.|+..... +..+..
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence 667788889999999999 77654221100000 1111111 1112233 3344455888888865432 222211
Q ss_pred ----------CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 344 ----------CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 344 ----------~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
.......+.++|+++.++++.. ++ |.++|..+.+.+ .++.. ......++|+|
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv------~~i~~-g~~p~~i~~s~ 327 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS------SQISL-GHDVDAISVAQ 327 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE------EEEEC-CCCcCeEEECC
Confidence 1223445788999887776542 24 999999987654 55543 34688999999
Q ss_pred C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784 403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL 429 (501)
Q Consensus 403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~ 429 (501)
+ + +++++. .++.|.++|+.+++.+.++
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9 5 666665 5899999999999998883
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=2.9e-10 Score=102.89 Aligned_cols=239 Identities=6% Similarity=-0.075 Sum_probs=163.9
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeec--cCCCCceEEEEeeecCCCCCCEEEE
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILAS 227 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~s 227 (501)
..+...+.++++.+ +|+++++...++.|.+||.......+ ..+...+.++++. +++.++++
T Consensus 11 ~~~~~~~~~i~~d~-------------~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~----~~g~l~v~ 73 (299)
T 2z2n_A 11 TNQDTGPYGITVSD-------------KGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTIS----SDGEVWFT 73 (299)
T ss_dssp CSSSCCEEEEEECT-------------TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC----TTSCEEEE
T ss_pred CCcCCCccceEECC-------------CCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEEC----CCCCEEEe
Confidence 34556799999998 78888877778899999932333333 2345678899985 78888887
Q ss_pred eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784 228 GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG 307 (501)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 307 (501)
...++.|..||.. +.. ....+......+..+++.+ ++.++++...++.|..||. +++...
T Consensus 74 ~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~------------ 133 (299)
T 2z2n_A 74 ENAANKIGRITKK-GII-----KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIRE------------ 133 (299)
T ss_dssp ETTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEE------------
T ss_pred CCCCCeEEEECCC-CcE-----EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEE------------
Confidence 7778899999976 221 1112223455688899986 6777777777889999987 442210
Q ss_pred CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784 308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
.........+..++++++|+++++...++ |..||. +++.. ..
T Consensus 134 -------------------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~ 176 (299)
T 2z2n_A 134 -------------------------------YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-----EF 176 (299)
T ss_dssp -------------------------------EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-----EE
T ss_pred -------------------------------ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-----Ee
Confidence 00111245678999999998888877656 999998 54321 01
Q ss_pred cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE
Q 010784 387 ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 387 ~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~ 465 (501)
.+..+...+..++++++ .++++...++.|.+||. +++... +.. ..+...+..++++++|++.++.. .++.|.
T Consensus 177 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~~~~g~l~v~~~--~~~~i~ 249 (299)
T 2z2n_A 177 KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---PTPNARPHAITAGAGIDLWFTEW--GANKIG 249 (299)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECSTTCEEEEET--TTTEEE
T ss_pred eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---CCCCCCceeEEECCCCCEEEecc--CCceEE
Confidence 12233456889999998 87777667889999998 665432 211 22345688999999999777664 457888
Q ss_pred Eeec
Q 010784 466 FRDF 469 (501)
Q Consensus 466 ~w~~ 469 (501)
.|+.
T Consensus 250 ~~d~ 253 (299)
T 2z2n_A 250 RLTS 253 (299)
T ss_dssp EEET
T ss_pred EECC
Confidence 8886
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.6e-10 Score=109.19 Aligned_cols=247 Identities=8% Similarity=-0.009 Sum_probs=158.0
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC--c
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH--S 189 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~ 189 (501)
.+..|++++++.++++...++.|++||..++ ........ ..... ++|++ +++.|+++..++ .
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~-~~~~~-ia~~~-------------~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPG-FKGGK-PAVTK-------------DKQRVYSIGWEGTHT 195 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEET-CCBCB-CEECT-------------TSSEEEEEBSSTTCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeecc-CCCCc-eeEec-------------CCCcEEEEecCCCce
Confidence 3788999999999998888899999999864 44333333 33334 88888 788888888766 6
Q ss_pred eEEec--CCceeeec----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee--ccCCCCce
Q 010784 190 IRLWW--KGSCQRCF----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT--LYGHEKPI 261 (501)
Q Consensus 190 i~vwd--~~~~~~~~----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v 261 (501)
|.+++ .+.....+ ......+.+++++ +++..|+.+..++.|+.||..++.. ..... ..++...-
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~----p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALD----ETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTN 267 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEEC----TTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCS
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEe----CCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCC
Confidence 88887 22222232 2245567788886 6444555577788999999987642 01100 22222222
Q ss_pred --eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 262 --KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 262 --~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
..++++|.++.++++-..++.|+.|+...... . ........+. ..+ .
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~--~~g~~~~~g~------------------------~dg---~ 316 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--W--FCGSATQKTV------------------------QDG---L 316 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--E--EEECTTCCSC------------------------BCE---E
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--E--EEeCCCCCCc------------------------CCC---c
Confidence 38999986677888878889999998764310 0 0000000000 000 0
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCc---------------ccCeEEEEecC
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGH---------------VGSVTQLHMDP 402 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~ 402 (501)
.....-.....++++++|+++++-+ .+. |+.|++.++.. .++.++ -.....+++++
T Consensus 317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-------~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~ 389 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-------STVAGQVDVASQIDGTPLEATFNYPYDICYDG 389 (409)
T ss_dssp GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-------EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-------EEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence 0000123468899999999888877 667 99999766542 222222 24588999999
Q ss_pred C-eEEEEecCCCcEEEEeC
Q 010784 403 Y-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~ 420 (501)
+ .++++-..+++|+.+++
T Consensus 390 ~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 390 EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEECCCCeEEEEEe
Confidence 8 88888888889988875
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=7.4e-10 Score=103.16 Aligned_cols=266 Identities=11% Similarity=-0.027 Sum_probs=164.0
Q ss_pred cCcEEEEeeC--CC---ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEec
Q 010784 177 TENVLVTSSC--DH---SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSL 239 (501)
Q Consensus 177 ~~~~l~s~~~--dg---~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~ 239 (501)
++++++.... .. +|.++| +++.+..+.....+ .++++ +++++++.+. .++.|.+||.
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~s----pDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAA----HSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEEC----CCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 6676666553 22 789999 77777777654444 88887 8999999886 3678999999
Q ss_pred cCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccc-eecccceecCCCc
Q 010784 240 SSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRS-SCCVGMTSVPGVP 309 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~ 309 (501)
.+.+. +..+... ...-..+.++| ++++|+++.. ++.|.++| .+++.+.. .. ..+.
T Consensus 105 ~t~~~------~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~------~~~~- 169 (373)
T 2mad_H 105 VTFLP------IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS------SPTC- 169 (373)
T ss_pred CCCcE------EEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC------CCce-
Confidence 87653 3322211 12235789998 6777777764 57899999 88865433 21 1111
Q ss_pred eeeecCCCeEEEE--eCCcEEEEEcCCCceEeeec-----cCCCc-EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 310 VDMKCHESMLYIA--SGSSVVTIDLRTMQKVMTPA-----ICKPI-LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 310 ~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-----~~~~~-v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
..+.......+++ .++.+.++|. +++...... ....+ .....+.+++..++..+.++ +.+.|+......
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~- 247 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT- 247 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce-
Confidence 1222222223332 2357888888 776653221 11222 12345566544433333455 999998764321
Q ss_pred CCCCcccccC----------cccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784 381 KPQPMAELDG----------HVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 381 ~~~~~~~~~~----------h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 439 (501)
.+..+.. .......+.++|+ +++++.. ..+.|.++|..+++.+.++.. ..
T Consensus 248 ---v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~ 318 (373)
T 2mad_H 248 ---NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GH 318 (373)
T ss_pred ---EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------CC
Confidence 0111110 1123445778888 5555532 135799999999999988843 22
Q ss_pred ceeeeEeecccc-EEEEeecCCCceEEEeeccCCccc
Q 010784 440 STGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 440 ~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
....++|+|||+ +++++.. .++.|.++|..+.+..
T Consensus 319 ~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 319 DVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQD 354 (373)
T ss_pred CcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCEE
Confidence 578999999999 6777653 3699999999887753
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=9.9e-11 Score=107.54 Aligned_cols=273 Identities=12% Similarity=0.030 Sum_probs=168.4
Q ss_pred CCcCcEEEEeeC-----CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEE
Q 010784 175 QRTENVLVTSSC-----DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLW 237 (501)
Q Consensus 175 ~~~~~~l~s~~~-----dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iw 237 (501)
.|+++.++.... ++.|.+.| +++.+..+.....+ . +.++ ++|++++++. .++.|.+|
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~s----pDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVA----DDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEEC----TTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEEC----CCCCEEEEEcccccccccCCCCCEEEEE
Confidence 347887777765 67999999 77777777755555 3 8887 8999888775 36789999
Q ss_pred eccCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCC
Q 010784 238 SLSSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 238 d~~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
|..+.+. +..+... ...-..+.++| ++++++.+.. ++.|.++|+.+++.+..... .+.
T Consensus 115 D~~t~~v------~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------~g~ 181 (386)
T 3sjl_D 115 DPVTLLP------TADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------PDC 181 (386)
T ss_dssp CTTTCCE------EEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------CSE
T ss_pred ECCCCeE------EEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------CCc
Confidence 9998763 4443211 12345689998 6777776653 68999999999976655432 111
Q ss_pred ceeeecCCCeEEE-EeCCcEEEEEcCC-CceEeeeccC----CCcEE-EEEE-cCCCcEEEEEcCCcEEEEecCCCCCCC
Q 010784 309 PVDMKCHESMLYI-ASGSSVVTIDLRT-MQKVMTPAIC----KPILH-SFSI-MPSKSLICTGGIGKAMTWDIRRSQDAV 380 (501)
Q Consensus 309 ~~~~~~~~~~~~~-~~~~~i~~~d~~~-~~~~~~~~~~----~~~v~-~v~~-~~~~~~l~~~~~d~i~iwd~~~~~~~~ 380 (501)
...........+. +.++.+.+.++.+ ++.......+ ..++. ...| .++|++++....+.+++.|+.......
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCccee
Confidence 1111111122222 2334666666654 3332211111 12221 2355 367877665554449999997654210
Q ss_pred CCCCccccc------C-cccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 381 KPQPMAELD------G-HVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 381 ~~~~~~~~~------~-h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
...+..+. + ..+....++++++ +++++-. ..+.|.+.|+.+++.+.++.. ...+.
T Consensus 262 -~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~ 334 (386)
T 3sjl_D 262 -LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEID 334 (386)
T ss_dssp -CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEEC
T ss_pred -ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcc
Confidence 11111000 0 1233445777887 5555532 125799999999999999853 23678
Q ss_pred eeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784 443 CSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 443 ~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.+++++|++ +|+++.. .++.|.++|..++..
T Consensus 335 ~lavs~D~~~~ly~tn~-~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 335 SINVSQDEKPLLYALST-GDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEECSSSSCEEEEEET-TTTEEEEEETTTCCE
T ss_pred eEEECCCCCeEEEEEcC-CCCeEEEEECCCCcE
Confidence 999999997 6766543 579999999987764
No 206
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.39 E-value=2.7e-13 Score=86.21 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=40.3
Q ss_pred CcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHH
Q 010784 17 TTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRL 63 (501)
Q Consensus 17 ~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~ 63 (501)
...+..||.|++.+||+||+++||.++++|||+|+.++.++.+|+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 35678999999999999999999999999999999999999999875
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=5.5e-10 Score=101.01 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=144.9
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE 230 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~ 230 (501)
+..--.+..|++. ++.++++...++.|..|| .+.....+. ....+.+++++ ++++++++ .
T Consensus 11 ~~~~~Egp~w~~~------------~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~----~dG~l~v~-~- 71 (297)
T 3g4e_A 11 NCRCGESPVWEEV------------SNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALR----QSGGYVAT-I- 71 (297)
T ss_dssp CCSBEEEEEEETT------------TTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEB----TTSSEEEE-E-
T ss_pred CCccccCCeEECC------------CCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEEC----CCCCEEEE-E-
Confidence 3345567888883 466777777889999999 333333333 45678999996 78885554 3
Q ss_pred CCcEEEEeccCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCC---------eEEEEECCCCccccceec
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDS---------KVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg---------~v~vwd~~~~~~~~~~~~ 299 (501)
++.|.+||..++.. ..+..... ....+..+++.+ +++++++..... .-.+|.+...
T Consensus 72 ~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------- 138 (297)
T 3g4e_A 72 GTKFCALNWKEQSA----VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-------- 138 (297)
T ss_dssp TTEEEEEETTTTEE----EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------
T ss_pred CCeEEEEECCCCcE----EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC--------
Confidence 56899999887642 11111111 123467888887 566555443211 1222222211
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecC--C
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIR--R 375 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~--~ 375 (501)
++ ...+..+....+.++|+|+++.++ +.+.++ |.+||+. +
T Consensus 139 -----------------------------------g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 139 -----------------------------------HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp -----------------------------------SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred -----------------------------------CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 01 111111223457899999998665 444455 9999874 3
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEE
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRI 453 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l 453 (501)
+... ..+.+..+..+.+.+..++++++ ++.++....+.|.+||..+++.+..+. .+...+++++|. |+++.|
T Consensus 183 G~~~-~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-----~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 183 GQIS-NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-----LPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp CCEE-EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-----CSSSBEEEEEEESGGGCEE
T ss_pred Cccc-CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-----CCCCCceEEEEeCCCCCEE
Confidence 3211 01112233334456789999999 888887678889999999999888884 334578999998 898877
Q ss_pred EEeec
Q 010784 454 VTASY 458 (501)
Q Consensus 454 ~s~~~ 458 (501)
+.++.
T Consensus 257 ~vt~~ 261 (297)
T 3g4e_A 257 YVTCA 261 (297)
T ss_dssp EEEEB
T ss_pred EEEcC
Confidence 66654
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=6.2e-10 Score=105.22 Aligned_cols=242 Identities=7% Similarity=-0.058 Sum_probs=151.6
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA- 232 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg- 232 (501)
....|+|++ +++++++...++.|++|| .+..+..+........ ++|+ ++++.|+++..++
T Consensus 132 ~P~~la~d~-------------~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~----~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 132 YMWGIAAVG-------------NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVT----KDKQRVYSIGWEGT 193 (409)
T ss_dssp CEEEEEECS-------------TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEEC----TTSSEEEEEBSSTT
T ss_pred CceEEEEeC-------------CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEe----cCCCcEEEEecCCC
Confidence 456677766 788888888889999999 4333333322222233 7885 8888888888766
Q ss_pred -cEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 233 -TVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 233 -~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
.|.+++...+.. ......+ ......+.+++++|.++.+++ +..++.|+.||..++..... ...
T Consensus 194 ~~I~~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~-~~~---------- 258 (409)
T 3hrp_A 194 HTVYVYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLI-KQL---------- 258 (409)
T ss_dssp CEEEEEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEE-EEC----------
T ss_pred ceEEEEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEE-ecc----------
Confidence 788888766542 0011111 214456778899975555444 67788999999886632100 000
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc--EEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI--LHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
...++... ...++|+|+ +.++++...+. |+.|+..... .
T Consensus 259 -----------------------------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~--------~ 301 (409)
T 3hrp_A 259 -----------------------------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC--------E 301 (409)
T ss_dssp -----------------------------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE--------E
T ss_pred -----------------------------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE--------E
Confidence 00011111 128999995 66666666666 9999876421 1
Q ss_pred cccCc---------------ccCeEEEEecCC-eEEEEec-CCCcEEEEeCCCcccccccccCC-CC---------CCCc
Q 010784 387 ELDGH---------------VGSVTQLHMDPY-KIVTGGR-DDLRINIWETDTGMLANSLLCNY-PE---------EADI 439 (501)
Q Consensus 387 ~~~~h---------------~~~v~~l~~~~~-~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~-~~---------~~~~ 439 (501)
.+.++ -.....++++|+ .++++-+ .++.|+.|++.+++.. ++..+. .. ..-.
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~ 380 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFN 380 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBS
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeC
Confidence 12111 134789999999 8888887 8999999998777643 332210 00 0124
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
....++++++|.++++-. .+++|+.+++
T Consensus 381 ~P~giavd~~g~lyVad~--~n~~Ir~i~~ 408 (409)
T 3hrp_A 381 YPYDICYDGEGGYWIAEA--WGKAIRKYAV 408 (409)
T ss_dssp SEEEEEECSSSEEEEEES--TTCEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEC--CCCeEEEEEe
Confidence 578899999988777776 5688887765
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=8.3e-09 Score=93.27 Aligned_cols=238 Identities=8% Similarity=-0.082 Sum_probs=160.5
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeee--ccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRC--FKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
.....+.++++.+ +|+++++...++.|.+||....... +..+...+.++++. +++.++++.
T Consensus 17 ~~~~~p~~i~~d~-------------~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~l~v~~ 79 (300)
T 2qc5_A 17 IPDSGPYGITSSE-------------DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS----SLGDIWFTE 79 (300)
T ss_dssp STTCCEEEEEECT-------------TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC----TTSCEEEEE
T ss_pred CCCCCcceeeECC-------------CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEEC----CCCCEEEEe
Confidence 3446788999988 7888888777899999992232322 22334678888885 788887777
Q ss_pred eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
..++.|..+|.. +.. ...........+..+++.+ ++.++++...++.|..+|.. ++...
T Consensus 80 ~~~~~v~~~d~~-g~~-----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~------------- 138 (300)
T 2qc5_A 80 NGANKIGKLSKK-GGF-----TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYE------------- 138 (300)
T ss_dssp TTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEE-------------
T ss_pred cCCCeEEEECCC-CCe-----EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEE-------------
Confidence 667889999987 432 1122222345688899986 67777777667889999876 43210
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
..+......+..+++.++++++++...++ |..+|. +++.. ...
T Consensus 139 ------------------------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~ 182 (300)
T 2qc5_A 139 ------------------------------YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-----EYP 182 (300)
T ss_dssp ------------------------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEE
T ss_pred ------------------------------ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-----Eee
Confidence 00111235678899999999777776555 999998 43321 112
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
...+...+..++++++ .++++....+.|.+|+. +++...... ......+.+++++++|++.++.. .++.|..
T Consensus 183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~--~~~~i~~ 255 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEW--GANQIGR 255 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEET--TTTEEEE
T ss_pred CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEecc--CCCeEEE
Confidence 2233456889999998 78777666778999998 554433211 12345678999999999777665 4578888
Q ss_pred eec
Q 010784 467 RDF 469 (501)
Q Consensus 467 w~~ 469 (501)
++.
T Consensus 256 ~~~ 258 (300)
T 2qc5_A 256 ITN 258 (300)
T ss_dssp ECT
T ss_pred ECC
Confidence 886
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.32 E-value=1.2e-10 Score=119.53 Aligned_cols=238 Identities=12% Similarity=0.004 Sum_probs=146.8
Q ss_pred CCceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 112 PHDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
.+..++|||||+++|.++.+ ..|++||+.++ +.+.. ..+...+..++|+| | +.|+.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wsp-------------D-~~l~~~~~ 227 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLG-------------N-DALLYSRF 227 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEEST-------------T-SEEEEEEC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEEC-------------C-CEEEEEEe
Confidence 46788999999999876554 67999999986 33322 11222235788888 8 88888777
Q ss_pred CCc--------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEeccC
Q 010784 187 DHS--------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSLSS 241 (501)
Q Consensus 187 dg~--------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~~~ 241 (501)
++. |++|+ ++. .+.....+...+..+.|+ ++|++|+..+.++ .|.+||+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S----pDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS----SDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp CCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC----TTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC----CCCCEEEEEEEccCCCcceEEEEECCC
Confidence 654 78887 332 222223333457888997 8999888777544 899999987
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC----CCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK----DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES 317 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (501)
+.. .....+..+...+.... .+ ++..|+..+. ++.|.+||+.++. .
T Consensus 304 ~~~----~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~--~---------------------- 353 (741)
T 1yr2_A 304 GKI----GPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGST--P---------------------- 353 (741)
T ss_dssp TEE----CCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSS--C----------------------
T ss_pred CCC----cccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCc--c----------------------
Confidence 621 00233444444444443 35 4555555554 3458888876531 0
Q ss_pred eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccC-cccC
Q 010784 318 MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDG-HVGS 394 (501)
Q Consensus 318 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~-h~~~ 394 (501)
+....+..+...+.++.++ ++.++++...++ .+||.+. .++. ...+.. +.+.
T Consensus 354 ------------------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~------~~~l~~~~~~~ 408 (741)
T 1yr2_A 354 ------------------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP------AGAVSLPGIGS 408 (741)
T ss_dssp ------------------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE------EEECBCSSSCE
T ss_pred ------------------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc------eeeccCCCCeE
Confidence 0011122234456677777 667777777766 6666443 2222 234443 3567
Q ss_pred eEEEEecCC--eEEEEe---cCCCcEEEEeCCCcc
Q 010784 395 VTQLHMDPY--KIVTGG---RDDLRINIWETDTGM 424 (501)
Q Consensus 395 v~~l~~~~~--~~l~~g---s~dg~i~iwd~~~~~ 424 (501)
+..+.++|+ .++++. ...++|++||+.+++
T Consensus 409 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 409 ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 888999987 444433 245789999998876
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=1.3e-10 Score=107.34 Aligned_cols=144 Identities=10% Similarity=0.077 Sum_probs=107.7
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccc--------c-ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--------Y-RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--------~-~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
+++.+++++.+.++++|+.++.+. |+++...+ . ......+.. |+.|+| . ++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d--------------~~~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-H--------------GDQVL 101 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-E--------------TTEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCCC-eeEEEE-C--------------CCEEE
Confidence 599999999999999998876554 98765321 1 112334666 999999 3 58888
Q ss_pred EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
++ .++.|++|| ..........|..++.++.+. .+ .++++..||.|.+||+.++.. .. +...
T Consensus 102 v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~---~p---~~av~~~dG~L~v~dl~~~~~------~~----~~~~ 164 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNV---NN---TLVILNSVNDLSALDLRTKST------KQ----LAQN 164 (388)
T ss_dssp EE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEEC---SS---EEEEEETTSEEEEEETTTCCE------EE----EEES
T ss_pred EE-cCCcEEEEEchhhhccCccceeecceeeEEec---CC---CEEEEECCCCEEEEEccCCcc------cc----ccCC
Confidence 88 889999999 223334455677888888874 12 288889999999999997653 21 4468
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
|++++|+| ++ ++.|..||.+++|+....+
T Consensus 165 Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 165 VTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EEEEEECS-SE--EEEEETTSCEEEEEEETTE
T ss_pred ceEEEEcC-Cc--eEEEEcCCcEEEEcCCCcc
Confidence 99999998 55 6789999999999887654
No 212
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=3.8e-09 Score=99.07 Aligned_cols=295 Identities=10% Similarity=0.017 Sum_probs=169.9
Q ss_pred EEeecCCeeeEEEEecccccccceecccC---------CcceeE-EEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784 124 FSTQGSSIQNIKIDNFLSESYYRATLSDH---------KARITC-MRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW 193 (501)
Q Consensus 124 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~h---------~~~V~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw 193 (501)
.+..++.++.+..+|..++ +.+...... ...+.+ +.. ++..++.++.++.|..+
T Consensus 55 ~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGGVTV---------------SGGHVYIGSEKAQVYAL 118 (376)
T ss_dssp EEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEEEEE---------------ETTEEEEEETTSEEEEE
T ss_pred EEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccCceE---------------eCCEEEEEcCCCEEEEE
Confidence 3344455788999999886 444443321 122222 222 45678888889999999
Q ss_pred c--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce-----eEEEE
Q 010784 194 W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI-----KLMSV 266 (501)
Q Consensus 194 d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----~~l~~ 266 (501)
| +++.+-.............. .+..++.++.++.|..+|..+++. +.......... .....
T Consensus 119 d~~tG~~~W~~~~~~~~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~ 186 (376)
T 3q7m_A 119 NTSDGTVAWQTKVAGEALSRPVV------SDGLVLIHTSNGQLQALNEADGAV------KWTVNLDMPSLSLRGESAPTT 186 (376)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEE------ETTEEEEECTTSEEEEEETTTCCE------EEEEECCC-----CCCCCCEE
T ss_pred ECCCCCEEEEEeCCCceEcCCEE------ECCEEEEEcCCCeEEEEECCCCcE------EEEEeCCCCceeecCCCCcEE
Confidence 9 67766555433322222222 234777888899999999988874 33222211110 11122
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceec---C---CCceeeecCCCeEEEEe-CCcEEEEEcCCCceEe
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV---P---GVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVM 339 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~ 339 (501)
. + ..++.++.++.|..+|..+++............. . ............+++++ .+.+..+|.++++.+.
T Consensus 187 ~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 187 A--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp E--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred E--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 2 3 3677788899999999999876544322111000 0 00011122345566665 4689999999999887
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-CcccCeEEEEecCCeEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMDPYKIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~l~~gs~dg~i~i 417 (501)
.... .....+.. ++..++.++.++ +..+|..+++.. .... .....+.......+.++++ +.+|.|.+
T Consensus 264 ~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~~ 332 (376)
T 3q7m_A 264 KREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL------WTQSDLLHRLLTSPVLYNGNLVVG-DSEGYLHW 332 (376)
T ss_dssp EECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE------EEECTTTTSCCCCCEEETTEEEEE-CTTSEEEE
T ss_pred eccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE------EeecccCCCcccCCEEECCEEEEE-eCCCeEEE
Confidence 6653 23444444 344555566555 999999988654 2222 1112223333334455554 58999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+|..+++.+..+... ...+...... .+..|+.++ .+|.|..|+
T Consensus 333 ~d~~tG~~~~~~~~~-----~~~~~~~~~~-~~~~l~v~~--~~G~l~~~~ 375 (376)
T 3q7m_A 333 INVEDGRFVAQQKVD-----SSGFQTEPVA-ADGKLLIQA--KDGTVYSIT 375 (376)
T ss_dssp EETTTCCEEEEEECC-----TTCBCSCCEE-ETTEEEEEB--TTSCEEEEE
T ss_pred EECCCCcEEEEEecC-----CCcceeCCEE-ECCEEEEEe--CCCEEEEEe
Confidence 999999988776421 1122221111 345666676 569998886
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=1.9e-09 Score=97.44 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=144.9
Q ss_pred CceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 113 HDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 113 i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
.....|++ ++.++.+....+.|..||..++ +. ..+ .....+.++++++ +|+++++ . ++.|.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~-~~~~~~~~i~~~~-------------dG~l~v~-~-~~~l~ 76 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-QV-QRV-TMDAPVSSVALRQ-------------SGGYVAT-I-GTKFC 76 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTC-CE-EEE-ECSSCEEEEEEBT-------------TSSEEEE-E-TTEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCC-cE-EEE-eCCCceEEEEECC-------------CCCEEEE-E-CCeEE
Confidence 56888888 5677788888899999998864 22 222 3456799999998 7785554 3 56788
Q ss_pred Eec--CCceeeeccC----CCCceEEEEeeecCCCCCCEEEEeeCC---------CcEEEEeccCCCccccccceeeccC
Q 010784 192 LWW--KGSCQRCFKG----HNGPVSTLSDKLLGDGSGKILASGGED---------ATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 192 vwd--~~~~~~~~~~----h~~~v~~l~~s~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+|| +++....... ....++.+++. ++|+++++...+ ..-.+|.++.... ...+..
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d----~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~~~~~ 146 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVD----PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH------VKKYFD 146 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEEC----TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC------EEEEEE
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEEC----CCCCEEEecCCcccccccccCCCcEEEEEECCCC------EEEEee
Confidence 998 3333221111 12357788885 788877654321 3345666654332 222222
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
+......++|+|+...++++.+.++.|.+||+. ++....
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--------------------------------------- 187 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--------------------------------------- 187 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------------------------------------
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------------------------------------
Confidence 334457899998444455666778899999873 442100
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEec
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGGR 410 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~gs 410 (501)
.+....+..+......++++++|++.++...++ |..||..+++.. ..+..+...+++++|. |+ .++++..
T Consensus 188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~------~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL------QTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE------EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE------EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 011112222345678899999998888877776 999999876644 5666666789999998 66 5555544
Q ss_pred CC
Q 010784 411 DD 412 (501)
Q Consensus 411 ~d 412 (501)
.+
T Consensus 262 ~~ 263 (297)
T 3g4e_A 262 RD 263 (297)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.27 E-value=3.1e-10 Score=104.37 Aligned_cols=299 Identities=11% Similarity=-0.006 Sum_probs=181.6
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW 193 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw 193 (501)
.+..++.++.+.+ |+.++.+..+| .++ +.......+...+.++...+ ++. +..++.+ |..+
T Consensus 23 ~~~~~d~~g~l~v-~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~-------------~g~-l~v~t~~--l~~~ 83 (330)
T 3hxj_A 23 SSPILAKNGTIYL-GSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGK-------------DGT-IYFGSDK--VYAI 83 (330)
T ss_dssp CCCEECTTSCEEC-SSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETT-------------TTE-ECCSSCE--EEEE
T ss_pred cCceEccCCeEEE-EcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEec-------------CCc-EEEecCc--EEEE
Confidence 4566666666544 45667788888 664 54544444444556666654 444 5555544 8888
Q ss_pred c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe
Q 010784 194 W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF 272 (501)
Q Consensus 194 d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 272 (501)
| +++.+..+...........+ . +..++.++.++.|..+|.. +.. ......+...+.++...+ ++
T Consensus 84 d~~g~~~~~~~~~~~~~~~~~~-----~-~~~l~v~t~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~-~g- 148 (330)
T 3hxj_A 84 NPDGTEKWRFDTKKAIVSDFTI-----F-EDILYVTSMDGHLYAINTD-GTE------KWRFKTKKAIYATPIVSE-DG- 148 (330)
T ss_dssp CCCGGGGGGSCC-----CCEEE-----E-TTEEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECT-TS-
T ss_pred CCCCcEEEEEECCCCcccCceE-----E-CCEEEEEecCCEEEEEcCC-CCE------EEEEcCCCceeeeeEEcC-CC-
Confidence 8 55555544433333333333 1 4567778888999999988 542 333333444455555543 44
Q ss_pred EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeec-CCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784 273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF 351 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v 351 (501)
.++.++.++.|..+|.. ++....... .......+.. ....+++++ +.+..+| .+++...........+.++
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFKT-----NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCC
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEec-----CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceece
Confidence 46678888999999988 654332221 1222333444 345567777 8999999 7777777766666678888
Q ss_pred EEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784 352 SIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 352 ~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
...++|.+.+...++++..+|. +++.. ..+......+..+...++ .+.++ +.+|.|..+|. +++.+..+.
T Consensus 221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~------~~~~~~~~~~~~~~~~~~g~l~v~-t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 221 AISEDGTIYVTSLDGHLYAINP-DGTEK------WRFKTGKRIESSPVIGNTDTIYFG-SYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp EECTTSCEEEEETTTEEEEECT-TSCEE------EEEECSSCCCSCCEECTTSCEEEE-CTTCEEEEECT-TSCEEEEEE
T ss_pred EECCCCeEEEEcCCCeEEEECC-CCCEe------EEeeCCCCccccceEcCCCeEEEe-cCCCCEEEECC-CCcEEEEEE
Confidence 8888887766655566888874 33322 333333333445566666 66655 57888999996 677666653
Q ss_pred cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 431 CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
. ....+.++...++|++.+ ++ .+|.+++.....
T Consensus 292 ~-----~~~~~~~~~~d~~g~l~~-gt--~~G~~~~~~~~~ 324 (330)
T 3hxj_A 292 T-----GSWIIATPVIDENGTIYF-GT--RNGKFYALFNLE 324 (330)
T ss_dssp C-----SSCCCSCCEECTTCCEEE-EC--TTSCEEEEEC--
T ss_pred c-----CCccccceEEcCCCEEEE-Ec--CCCeEEEEeccc
Confidence 2 244566777778887655 55 568888876554
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.3e-08 Score=93.17 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=138.5
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcE
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATV 234 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i 234 (501)
..+..|+|+ ++.++++...++.|..|| .+.....+. ....+.++.|. ++++++++. .+ .|
T Consensus 51 ~egp~~~~~------------~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~----~dg~l~v~~-~~-gl 111 (326)
T 2ghs_A 51 GEGPTFDPA------------SGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKI----SDSKQLIAS-DD-GL 111 (326)
T ss_dssp EEEEEEETT------------TTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEE----ETTEEEEEE-TT-EE
T ss_pred CcCCeEeCC------------CCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEe----CCCeEEEEE-CC-CE
Confidence 456788883 356777777789999998 433333333 34678999986 677777654 44 49
Q ss_pred EEEeccCCCccccccceeecc-C-CCCceeEEEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceecC
Q 010784 235 RLWSLSSSGKRGQQALKATLY-G-HEKPIKLMSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSVP 306 (501)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~-~-~~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~ 306 (501)
.+||..++.. ..+.... . ....+..+.+++ +++++++... .+.|..++ +++.
T Consensus 112 ~~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------- 171 (326)
T 2ghs_A 112 FLRDTATGVL----TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------- 171 (326)
T ss_dssp EEEETTTCCE----EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE-------------
T ss_pred EEEECCCCcE----EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE-------------
Confidence 9999877652 1111111 1 123578889987 5665554432 13344444 2211
Q ss_pred CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecC--CC-CCCCC
Q 010784 307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIR--RS-QDAVK 381 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~--~~-~~~~~ 381 (501)
..+..+......++|+|+++.++.+ +.++ |.+||+. ++ +.. .
T Consensus 172 --------------------------------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-~ 218 (326)
T 2ghs_A 172 --------------------------------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-K 218 (326)
T ss_dssp --------------------------------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-C
T ss_pred --------------------------------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-C
Confidence 0111112345789999999866544 4455 9999986 44 211 0
Q ss_pred CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEEEEeec
Q 010784 382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRIVTASY 458 (501)
Q Consensus 382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~ 458 (501)
...+..+......+..++++++ .++++...++.|.+||. +++.+..+. .+...+.+++|+ ++++.|+.++.
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-----~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-----VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-----CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-----CCCCCcEEEEEecCCCCEEEEEec
Confidence 1112223333455778999998 77777656788999998 677776663 234568999998 89887765553
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=9.5e-11 Score=108.14 Aligned_cols=182 Identities=9% Similarity=0.054 Sum_probs=131.3
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc-----eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS-----SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
++..+++++ ...++++|+.++ +.+|++........ .........+. +..+.+++..++++.++.+++||+++
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSS
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchh
Confidence 688899997 666888888875 66698765431000 11112224455 88888877778888788999999998
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL 413 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg 413 (501)
.........|...+.++.+.+.. +++++.++ |.+||+..+... .+...|++++|+|+.+ +.|..||
T Consensus 116 l~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~----------~~~~~Vs~v~WSpkG~-~vg~~dg 182 (388)
T 1xip_A 116 LSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK----------QLAQNVTSFDVTNSQL-AVLLKDR 182 (388)
T ss_dssp TTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE----------EEEESEEEEEECSSEE-EEEETTS
T ss_pred hhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc----------cccCCceEEEEcCCce-EEEEcCC
Confidence 88777777778888888877653 66677777 999999976532 2567899999999973 4456899
Q ss_pred cEEEEeCCCccc--ccccccC----CCCCCCcceeeeEeeccccEEEEee
Q 010784 414 RINIWETDTGML--ANSLLCN----YPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 414 ~i~iwd~~~~~~--~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
++++|+...++. ..++... ...+|...|.++.|.+++.++++=+
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999877664 4455221 1123578899999999999998743
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=2e-09 Score=100.77 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=167.9
Q ss_pred cCcEEEEeeC-C----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEec
Q 010784 177 TENVLVTSSC-D----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSL 239 (501)
Q Consensus 177 ~~~~l~s~~~-d----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~ 239 (501)
+++.++.... + +.|.+.| +++.+..+..-..+ .+.++ +++++++.+. .++.|.++|.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~S----pDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAA----EDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEEC----TTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEEC----CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 5555555443 2 6999999 77788777655555 78987 8999888876 3678999999
Q ss_pred cCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCce
Q 010784 240 SSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
.+.+. +..+.-. ......+.++| ++++++.+.. ++.|.+.|+.+.+.+..+.. .+. .
T Consensus 157 ~t~~v------v~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v------~g~-~ 222 (426)
T 3c75_H 157 VTFLP------IADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV------PDC-Y 222 (426)
T ss_dssp TTCCE------EEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------CSE-E
T ss_pred CCCcE------EEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc------CCc-e
Confidence 98763 4333211 12335678998 6777777664 57899999999876554332 111 1
Q ss_pred eeecCC-CeEEEE-eCCcEEEEEcCCCceEee----eccCCCcE-EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 311 DMKCHE-SMLYIA-SGSSVVTIDLRTMQKVMT----PAICKPIL-HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 311 ~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~----~~~~~~~v-~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
.+.... ...+.. .++.+.+.+..+++.... +.....++ ..+.+.+++..++..+.++ +.+.|........ .
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~ 301 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-R 301 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-C
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-e
Confidence 111111 222222 234666666654444321 11112221 2356788877666666666 9999986543210 0
Q ss_pred CCccc-------ccCcccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784 383 QPMAE-------LDGHVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 383 ~~~~~-------~~~h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
..+.. ..........++++|+ +++++.. .++.|.+.|..+.+.+.++.. ......+
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gi 375 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSI 375 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEE
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeE
Confidence 00000 0001122233678887 5565532 135799999999999999853 2247889
Q ss_pred Eeecccc-EEEEeecCCCceEEEeeccCCccc
Q 010784 445 AMAVSGC-RIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 445 ~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
.|+|||+ +++++.. .++.|.++|..+.+..
T Consensus 376 a~spDg~~~lyv~n~-~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 376 NVSQDAEPLLYALSA-GTQTLHIYDAATGEEL 406 (426)
T ss_dssp EECCSSSCEEEEEET-TTTEEEEEETTTCCEE
T ss_pred EEccCCCEEEEEEcC-CCCeEEEEECCCCCEE
Confidence 9999999 8888874 4799999999887753
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=2.6e-10 Score=105.51 Aligned_cols=269 Identities=9% Similarity=-0.033 Sum_probs=162.9
Q ss_pred CCCceEEeeCCcEEEeecCC--eeeEEEEecccccccc------eecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 111 KPHDHILLDNNDIFSTQGSS--IQNIKIDNFLSESYYR------ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~--d~~i~vw~~~~~~~~~------~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
..++.++++++|+++++... ++.++||.+.++ +.. ....+|-..+..+++.+ ++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~-------------~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDG-------------NGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECS-------------SSEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcC-------------CCcEEE
Confidence 56899999999999888542 233556655433 322 11234567899999988 777766
Q ss_pred EeeC-----CCceEEec--CCceeeeccC------CCCceEEEEeeecCCCC-CCEEEEee---CCCcEEEEeccCCCcc
Q 010784 183 TSSC-----DHSIRLWW--KGSCQRCFKG------HNGPVSTLSDKLLGDGS-GKILASGG---EDATVRLWSLSSSGKR 245 (501)
Q Consensus 183 s~~~-----dg~i~vwd--~~~~~~~~~~------h~~~v~~l~~s~~~~~~-~~~l~sg~---~dg~i~iwd~~~~~~~ 245 (501)
+-.. ++.|.+|| +++.+..+.. +...+..+++. ++ +..+++.. .++.|.+||+.++.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd----~~~g~~yvtd~~~~~~~~i~v~d~~~g~-- 156 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD----LIHNFVYISDPAPDDKAALIRVDLQTGL-- 156 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE----TTTTEEEEEECCSGGGCEEEEEETTTCC--
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEe----cCCCEEEEEcCccCCCCeEEEEECCCCC--
Confidence 5543 57899999 5665555432 22356788885 44 44445544 67899999998765
Q ss_pred ccccceeeccCCCCcee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 246 GQQALKATLYGHEKPIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
....+.+|..... ...+.+ ++..+.+.+.++.++.|.
T Consensus 157 ----~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~------------------------------------- 194 (343)
T 2qe8_A 157 ----AARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH------------------------------------- 194 (343)
T ss_dssp ----EEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-------------------------------------
T ss_pred ----EEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-------------------------------------
Confidence 2444444322110 023333 455566666666654432
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCC--CCCCCCCcc--cccCcccCeEEE
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQ--DAVKPQPMA--ELDGHVGSVTQL 398 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~--~~~~~~~~~--~~~~h~~~v~~l 398 (501)
..+..++++|+++.|+.+...+ +..++..... .....+... ...++.+....+
T Consensus 195 ---------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 195 ---------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp ---------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred ---------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 1246799999998777776443 6555542110 000000001 111234456789
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+++++ .++++...++.|.+||..+++...... .........++|.++|+++++.+ ..+.+.+|.
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~~~~p~~va~~~~g~l~v~~~--~~~~~~~f~ 318 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEKLSWTDSFNFGSDGYLYFDCN--QLHHSAPLN 318 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGGGSCEEEEEECTTSCEEEEEC--CGGGSGGGB
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCceecCCeeEECCCCcEEEEeC--ccccccccc
Confidence 99999 888888889999999985565332221 11234578999999998888876 334444443
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=8.9e-10 Score=103.14 Aligned_cols=259 Identities=6% Similarity=-0.074 Sum_probs=167.1
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCcee
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQ 199 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~ 199 (501)
+.|.+.|..+. +.+.++.--..+ .++++| |+++++.+. .++.|.++| +++.+
T Consensus 99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~Sp-------------Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAE-------------DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp EEEEEEETTTT-EEEEEEEECSSC--EEEECT-------------TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CeEEEEECCCC-EEEEEEECCCCC--ceEECC-------------CCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 89999999985 777777654555 799999 788777775 467899999 66666
Q ss_pred eeccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 200 RCFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 200 ~~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
..+.-. ...-..+.|+ ++|++++.+.. ++.|.+.|+.+.+. +..+.... +....|..
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~s----pDGk~lyV~n~~~~~~VsVID~~t~kv------v~~I~v~g----~~~~~p~g 228 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALT----PDNKNLLFYQFSPAPAVGVVDLEGKTF------DRMLDVPD----CYHIFPAS 228 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEEC----TTSSEEEEEECSSSCEEEEEETTTTEE------EEEEECCS----EEEEEEEE
T ss_pred EEEECCCccccccCCCcceEEEc----CCCCEEEEEecCCCCeEEEEECCCCeE------EEEEEcCC----ceeeccCC
Confidence 655321 1233467776 89999998874 57899999998763 44444211 12344444
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc----eeeecCCCeEEEEe-CCcEEEEEcCCCceE--eeecc
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP----VDMKCHESMLYIAS-GSSVVTIDLRTMQKV--MTPAI 343 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~--~~~~~ 343 (501)
...+++.+.||.+.+.+..+++...... ........+ ..+...+..+++.. .+.+.+.|+...... ..+..
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 5677788889999988986554432110 111111111 11233444555444 457888998654422 11110
Q ss_pred ----------CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 344 ----------CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 344 ----------~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
.......++++|++..+++... ++ |.++|..+.+.+ .++.. ......+.|+|
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv------~~I~v-g~~P~gia~sp 379 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI------NKIEL-GHEIDSINVSQ 379 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEEE-EEEECEEEECC
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE------EEEEC-CCCcCeEEEcc
Confidence 0111123688999776665531 34 999999997654 55543 33588999999
Q ss_pred C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784 403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL 429 (501)
Q Consensus 403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~ 429 (501)
+ + ++++.. .++.|.++|+.+++.+.++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9 6 666655 5999999999999999886
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=7.5e-09 Score=93.91 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=144.2
Q ss_pred CceeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL 274 (501)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 274 (501)
+..+..+...........|+ ++++ +++++..++.|..|+.. +. ...+..+...+..+++.+ +++++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~----~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~-dG~l~ 100 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWW----EAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDA-QQRLV 100 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEE----GGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECT-TSCEE
T ss_pred CCceEEEecCCcCccCCeEe----CCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECC-CCCEE
Confidence 34444555555566788886 7777 67777788999999873 33 234444566788999997 67766
Q ss_pred EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--------------------CCcEEEEEcCC
Q 010784 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--------------------GSSVVTIDLRT 334 (501)
Q Consensus 275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~d~~~ 334 (501)
++...++.|.+|+.. ++.......... .....+..+.+++++.+..+ .+.|..+|..+
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 665566889999986 432111100000 11122344555555444442 13577777766
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEE
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIV 406 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l 406 (501)
++..... .......++|+|+++.|+.+... . |.+|++.... +........ ...+....++++++ ++.
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEE
T ss_pred CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEE
Confidence 6544333 34556889999999877666543 5 9999987543 100000111 12334567889998 766
Q ss_pred EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
++. .+ .|.+|+. +++.+..+.. +. .+..++|+++++.|..++
T Consensus 254 v~~-~~-gv~~~~~-~g~~~~~~~~-----~~-~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 254 SSS-GT-GVCVFDS-DGQLLGHIPT-----PG-TASNCTFDQAQQRLFITG 295 (305)
T ss_dssp ECC-SS-EEEEECT-TSCEEEEEEC-----SS-CCCEEEECTTSCEEEEEE
T ss_pred Eec-CC-cEEEECC-CCCEEEEEEC-----CC-ceeEEEEeCCCCEEEEEc
Confidence 664 44 4999998 5777777642 12 478899999998888877
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=1.9e-09 Score=99.23 Aligned_cols=256 Identities=8% Similarity=-0.093 Sum_probs=163.6
Q ss_pred eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCceee
Q 010784 133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQR 200 (501)
Q Consensus 133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~~ 200 (501)
.+.+.|..++ +.+.++..-..+ .+.++| |+++++.+. .+++|.+|| +++.+.
T Consensus 47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~sp-------------Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGH-------------SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEETTTT-EEEEEEEECTTC--EEEECT-------------TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEEECCCC-eEEEEEeCCCCC--ceEECC-------------CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 8889999985 777777655555 799999 788888776 478999999 777777
Q ss_pred eccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEE--EeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 201 CFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRL--WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 201 ~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
++..+ ...-..+.|+ ++|++++++.. +..|.+ +|..+ .. .+ ... +. +.+.|.
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~S----pDGk~lyVan~~~~~~v~V~~iD~~t-v~-----~i-~v~---~~---~~~~p~ 173 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNC----ASSACLLFFLFGSSAAAGLSVPGASD-DQ-----LT-KSA---SC---FHIHPG 173 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEEC----TTSSCEEEEECSSSCEEEEEETTTEE-EE-----EE-ECS---SC---CCCEEE
T ss_pred EEECCCccccccCCCcceEEEc----CCCCEEEEEccCCCCeEEEEEEchhh-ce-----EE-ECC---Cc---eEEccC
Confidence 76533 1234577886 89999998875 357888 88876 11 11 111 11 123344
Q ss_pred CCeEEEEEeCCCeEEEEECCC-----CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc--eEeeec
Q 010784 270 KSFLLVTISKDSKVRVWDTST-----SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ--KVMTPA 342 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~ 342 (501)
....+++.+.||.+.+.|+.+ ++...... ........+.. ...+...+.++.+.+.+.|..+.. .+..+.
T Consensus 174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~ 250 (368)
T 1mda_H 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNCSSQAAQ-ANYPGMLVWAVASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCBCSCCEE-ETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred CCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeCCCCccc-cccCCEEEEEcCCEEEEEECCCCcceEEEEEE
Confidence 455667777899999999887 43221100 11111122222 333333333333788889986532 222221
Q ss_pred c-------C---CCcEEEEEEcCCCcEEEEEcC----------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 343 I-------C---KPILHSFSIMPSKSLICTGGI----------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 343 ~-------~---~~~v~~v~~~~~~~~l~~~~~----------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
. + ......++++|+++.++.+.. +++.++|+.+.+.+ ..+... .....++++|
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv------~~i~vg-~~p~gi~~s~ 323 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS------GPISNG-HDSDAIIAAQ 323 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE------ECCEEE-EEECEEEECC
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE------EEEECC-CCcceEEECC
Confidence 1 0 011112679999887776532 24779999997654 555542 3588999999
Q ss_pred C--eEEEEec-CCCcEEEEeCCCccccccccc
Q 010784 403 Y--KIVTGGR-DDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 403 ~--~~l~~gs-~dg~i~iwd~~~~~~~~~~~~ 431 (501)
+ +++++.. .++.|.++|+.+++.+.++..
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 8 4777766 599999999999999999854
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=3.7e-08 Score=90.23 Aligned_cols=223 Identities=8% Similarity=-0.044 Sum_probs=136.8
Q ss_pred CceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 113 HDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 113 i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
....+|+++ +.++.++...+.|..|+..++ +. ..+. +...+.++++++ +|+++++. .+| |.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~-------------dg~l~v~~-~~g-l~ 112 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKIS-------------DSKQLIAS-DDG-LF 112 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEE-------------TTEEEEEE-TTE-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeC-------------CCeEEEEE-CCC-EE
Confidence 578899986 677777777899999998864 32 2222 346799999998 77777754 344 88
Q ss_pred Eec--CCceeeeccCC-----CCceEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCc
Q 010784 192 LWW--KGSCQRCFKGH-----NGPVSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 192 vwd--~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
+|| +++. ..+... ...+.++++. ++|+++++...+ +...+|.++++. ...+..+...
T Consensus 113 ~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d----~~G~l~v~~~~~~~~~~~~~l~~~~~g~-------~~~~~~~~~~ 180 (326)
T 2ghs_A 113 LRDTATGVL-TLHAELESDLPGNRSNDGRMH----PSGALWIGTMGRKAETGAGSIYHVAKGK-------VTKLFADISI 180 (326)
T ss_dssp EEETTTCCE-EEEECSSTTCTTEEEEEEEEC----TTSCEEEEEEETTCCTTCEEEEEEETTE-------EEEEEEEESS
T ss_pred EEECCCCcE-EEEeeCCCCCCCCCCCCEEEC----CCCCEEEEeCCCcCCCCceEEEEEeCCc-------EEEeeCCCcc
Confidence 898 3433 222211 2357888885 788876654321 233444444332 2222222334
Q ss_pred eeEEEEeecCCe-EEEEEeCCCeEEEEECC--CC-ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 261 IKLMSVAGHKSF-LLVTISKDSKVRVWDTS--TS-SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 261 v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
...++|++ +++ ++++.+.++.|.+||+. ++ +... .+
T Consensus 181 ~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~---------------------------------------~~ 220 (326)
T 2ghs_A 181 PNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------------------------------AE 220 (326)
T ss_dssp EEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------------------------------CE
T ss_pred cCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccC---------------------------------------ce
Confidence 67889997 555 44555667899999986 43 2100 00
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEecCC
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGGRDD 412 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~gs~d 412 (501)
....+......+..++++++|+++++...++ |.+||. +++. +..+..+...+++++|+ ++ .++++...+
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH------IARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE------EEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE------EEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 0111112234567899999998887776555 999998 4433 24555555679999998 76 455554444
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=1.2e-08 Score=92.54 Aligned_cols=234 Identities=10% Similarity=-0.016 Sum_probs=148.9
Q ss_pred EEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 106 FYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
+.....-....+|+++|. ++.++..++.|..|+.. + + ...+..+...+..+++.+ +|+++++.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~-------------dG~l~v~~ 103 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDA-------------QQRLVHCE 103 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECT-------------TSCEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECC-------------CCCEEEEE
Confidence 333444467889999987 66777788899999874 2 3 345556677899999998 78877766
Q ss_pred eCCCceEEec-CCceeeeccCC-----CCceEEEEeeecCCCCCCEEEE----eeC-------------CCcEEEEeccC
Q 010784 185 SCDHSIRLWW-KGSCQRCFKGH-----NGPVSTLSDKLLGDGSGKILAS----GGE-------------DATVRLWSLSS 241 (501)
Q Consensus 185 ~~dg~i~vwd-~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~~~l~s----g~~-------------dg~i~iwd~~~ 241 (501)
..++.|.+|+ .++ ...+..+ ...+.++++. ++|++.++ |.. .+.|..+|..+
T Consensus 104 ~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d----~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 104 HGRRAITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVA----RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp TTTTEEEEECTTSC-EEEEECEETTEECSCCCCEEEC----TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred CCCCEEEEECCCCC-EEEEEeccCCCccCCCCCEEEC----CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 6668899998 443 3222211 1345678885 88988886 432 24566677655
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH 315 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (501)
+.. ..+. .......++|+| +++.|+.+... +.|.+|++.... +........ ...+.+..+..+
T Consensus 179 g~~-------~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d 247 (305)
T 3dr2_A 179 SPL-------QRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVD 247 (305)
T ss_dssp CCC-------EEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC-CSSSCCCSEEEC
T ss_pred CcE-------EEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE-CCCCCCCeEEEC
Confidence 542 1122 334567899998 66656555554 789999987653 111111100 123334445554
Q ss_pred CCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEec
Q 010784 316 ESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDI 373 (501)
Q Consensus 316 ~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~ 373 (501)
+++ +++++.+.|.+|+. .++.+..+..+. .+.+++|+++++.|..++.+++..+++
T Consensus 248 ~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~~ 304 (305)
T 3dr2_A 248 RGGWLWSSSGTGVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLPL 304 (305)
T ss_dssp TTSCEEECCSSEEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred CCCCEEEecCCcEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence 433 55555568999998 466666666544 588899999988888887777555443
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=6e-09 Score=104.99 Aligned_cols=289 Identities=11% Similarity=0.040 Sum_probs=169.3
Q ss_pred ecCCeeeEEEEecccccccceecccCCcc-----------eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-
Q 010784 127 QGSSIQNIKIDNFLSESYYRATLSDHKAR-----------ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW- 194 (501)
Q Consensus 127 ~g~~d~~i~vw~~~~~~~~~~~~~~h~~~-----------V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd- 194 (501)
.++.++.+.-+|..+| +.+..+...... ...+++ .+..++.++.|+.|..+|
T Consensus 82 v~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~~v~v~~~dg~l~alD~ 145 (677)
T 1kb0_A 82 VSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL---------------WKGKVYVGAWDGRLIALDA 145 (677)
T ss_dssp EECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE---------------ETTEEEEECTTSEEEEEET
T ss_pred EECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE---------------ECCEEEEEcCCCEEEEEEC
Confidence 3444788899999886 555544332210 011222 456788888899999999
Q ss_pred -CCceeeeccCC-C----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCCccccccceeeccCC----
Q 010784 195 -KGSCQRCFKGH-N----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSGKRGQQALKATLYGH---- 257 (501)
Q Consensus 195 -~~~~~~~~~~h-~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~---- 257 (501)
+|+.+-.+..+ . ..+.+ ... .+..++.++. +|.|+.+|..+++. +-.+...
T Consensus 146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v------~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~~ 213 (677)
T 1kb0_A 146 ATGKEVWHQNTFEGQKGSLTITGAPRV------FKGKVIIGNGGAEYGVRGYITAYDAETGER------KWRWFSVPGDP 213 (677)
T ss_dssp TTCCEEEEEETTTTCCSSCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCT
T ss_pred CCCCEEeeecCCcCcCcCcccccCcEE------ECCEEEEEecccccCCCCEEEEEECCCCcE------EEEeccCCCCc
Confidence 78877666543 1 12211 111 1335555543 78999999999875 2222111
Q ss_pred ----------------------------CCceeEEEEeecCCeEEEEEeCCC-------------------eEEEEECCC
Q 010784 258 ----------------------------EKPIKLMSVAGHKSFLLVTISKDS-------------------KVRVWDTST 290 (501)
Q Consensus 258 ----------------------------~~~v~~l~~~~~~~~~l~s~s~dg-------------------~v~vwd~~~ 290 (501)
......+++.+ +...++.++.++ .|..+|.++
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T 292 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT 292 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence 11113467776 455677776654 599999999
Q ss_pred Cccccceecccce----ecCCCceeeec--CCC--eEEEEe--CCcEEEEEcCCCceEeeeccCC-----------CcE-
Q 010784 291 SSAVRSSCCVGMT----SVPGVPVDMKC--HES--MLYIAS--GSSVVTIDLRTMQKVMTPAICK-----------PIL- 348 (501)
Q Consensus 291 ~~~~~~~~~~~~~----~~~~~~~~~~~--~~~--~~~~~~--~~~i~~~d~~~~~~~~~~~~~~-----------~~v- 348 (501)
++.+-........ .....+..... +.. ..++.. .+.++++|.++++.+....... ..+
T Consensus 293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~ 372 (677)
T 1kb0_A 293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIG 372 (677)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEE
T ss_pred CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceee
Confidence 9876554432221 01112222221 221 222222 2489999999999886554211 111
Q ss_pred -----------------------EEEEEcCCCcEEEEEcC----------------------------------------
Q 010784 349 -----------------------HSFSIMPSKSLICTGGI---------------------------------------- 365 (501)
Q Consensus 349 -----------------------~~v~~~~~~~~l~~~~~---------------------------------------- 365 (501)
..++++|++.++++...
T Consensus 373 ~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 452 (677)
T 1kb0_A 373 IAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK 452 (677)
T ss_dssp CGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC
T ss_pred ccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC
Confidence 14688898777776532
Q ss_pred ---Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 366 ---GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 366 ---d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
.+ |..||+.+++.+ ..+. +..++....+... .+++.++.||.+++||..+++.+.++.... ...
T Consensus 453 ~~~~g~l~A~D~~tG~~~------W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~~~ 521 (677)
T 1kb0_A 453 SKPFGRLLAWDPVAQKAA------WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----GVV 521 (677)
T ss_dssp SCCEEEEEEEETTTTEEE------EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCC
T ss_pred CCCccEEEEEeCCCCcEE------eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----Ccc
Confidence 15 999999987654 3332 2223333334433 455556899999999999999999986432 223
Q ss_pred eeeeEeeccccEEEE
Q 010784 441 TGCSAMAVSGCRIVT 455 (501)
Q Consensus 441 v~~~~~s~~g~~l~s 455 (501)
..-+.|..+|+.+++
T Consensus 522 ~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 522 AAPSTYMVDGRQYVS 536 (677)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCCEEEEeCCEEEEE
Confidence 344667788875544
No 225
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=103.67 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=47.0
Q ss_pred ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh
Q 010784 19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ 67 (501)
Q Consensus 19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~ 67 (501)
.|..||.||+++||+||+|+||+++++|||+||.+++|+.|||.++.+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 5788999999999999999999999999999999999999999999876
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.13 E-value=7e-09 Score=104.71 Aligned_cols=295 Identities=13% Similarity=0.065 Sum_probs=166.5
Q ss_pred EeecCCeeeEEEEecccccccceecccCCcc----------e-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784 125 STQGSSIQNIKIDNFLSESYYRATLSDHKAR----------I-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW 193 (501)
Q Consensus 125 ~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~----------V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw 193 (501)
+..++.++.+.-+|..+| +.+..+..+... + ..+.. .+..++.++.|+.|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~g~v~v~~~dg~l~Al 136 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV---------------WKGKVYVGVLDGRLEAI 136 (689)
T ss_dssp EEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE---------------ETTEEEEECTTSEEEEE
T ss_pred EEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE---------------ECCEEEEEccCCEEEEE
Confidence 334455788999999886 555555433221 0 11111 45678888899999999
Q ss_pred c--CCceeeeccCC--CCceEEEEeeecCCCCCCEEEEee------CCCcEEEEeccCCCccccccceeeccC-------
Q 010784 194 W--KGSCQRCFKGH--NGPVSTLSDKLLGDGSGKILASGG------EDATVRLWSLSSSGKRGQQALKATLYG------- 256 (501)
Q Consensus 194 d--~~~~~~~~~~h--~~~v~~l~~s~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------- 256 (501)
| +|+.+-.+... ......+..+|.- .++ .++.++ .+|.|..||..+++. +-.+..
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~p~~ 208 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKE------AWRFYTVPGDPKL 208 (689)
T ss_dssp ETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCTTS
T ss_pred ECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcE------EEEecccCCCccc
Confidence 9 78776554431 1110111111000 134 444443 378999999999875 222110
Q ss_pred ------------------------CCCceeEEEEeecCCeEEEEEeCCCe-------------------EEEEECCCCcc
Q 010784 257 ------------------------HEKPIKLMSVAGHKSFLLVTISKDSK-------------------VRVWDTSTSSA 293 (501)
Q Consensus 257 ------------------------~~~~v~~l~~~~~~~~~l~s~s~dg~-------------------v~vwd~~~~~~ 293 (501)
+......+++.+ +..+++.++.++. |..+|.++++.
T Consensus 209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~ 287 (689)
T 1yiq_A 209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY 287 (689)
T ss_dssp CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE
T ss_pred ccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce
Confidence 011112467776 4567888877764 99999999987
Q ss_pred ccceeccccee----cCCCce--eeecCCC---eEEEEe-CCcEEEEEcCCCceEeeeccCC------------------
Q 010784 294 VRSSCCVGMTS----VPGVPV--DMKCHES---MLYIAS-GSSVVTIDLRTMQKVMTPAICK------------------ 345 (501)
Q Consensus 294 ~~~~~~~~~~~----~~~~~~--~~~~~~~---~~~~~~-~~~i~~~d~~~~~~~~~~~~~~------------------ 345 (501)
+-......... ....+. .+..... .++.+. .+.++++|.++++.+.......
T Consensus 288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 65544322110 111111 1111221 122222 2489999999998874322110
Q ss_pred ----------C-----------cEEEEEEcCCCcEEEEEcC---------------------------------------
Q 010784 346 ----------P-----------ILHSFSIMPSKSLICTGGI--------------------------------------- 365 (501)
Q Consensus 346 ----------~-----------~v~~v~~~~~~~~l~~~~~--------------------------------------- 365 (501)
. .-..++++|+..++++...
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 0 0112678888777776521
Q ss_pred ------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCC
Q 010784 366 ------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEA 437 (501)
Q Consensus 366 ------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 437 (501)
++ |+.||+.+++.+ ..+..+. ++..-.+... .+++.|+.||.++.||.++|+.+.++....
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~------W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~---- 516 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAA------WEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS---- 516 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEE------EEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----
T ss_pred CCCCCcceeEEEEECCCCCeE------eEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----
Confidence 25 888999887654 3333222 2222233333 566667899999999999999998885322
Q ss_pred CcceeeeEeeccccEEEE
Q 010784 438 DISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s 455 (501)
.....-+.|..+|+..++
T Consensus 517 ~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 222344677889874443
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=1e-08 Score=104.23 Aligned_cols=234 Identities=12% Similarity=0.091 Sum_probs=143.2
Q ss_pred CceEEeeCCcEEEe-----ecCCeeeEEEEecccccccceecccCCcc--eeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 113 HDHILLDNNDIFST-----QGSSIQNIKIDNFLSESYYRATLSDHKAR--ITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 113 i~~~~~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
+..+++||||+++| .|+....|+++|+.++ +.+.. +... ...++|+ + ++.|+.++
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~---~~~~~k~~~~~Ws-D-------------g~~l~y~~ 192 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLET---PLKDVKFSGISWL-G-------------NEGFFYSS 192 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEE---EEEEEESCCCEEE-T-------------TTEEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCcc---ccCCceeccEEEe-C-------------CCEEEEEE
Confidence 67789999999999 5677789999999986 33221 2222 2566777 4 56777776
Q ss_pred CCCc-------------eEEec--CCc----eeeeccC-CCCceEEEEeeecCCCCCCEEEEeeC----CCcEEEEeccC
Q 010784 186 CDHS-------------IRLWW--KGS----CQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGE----DATVRLWSLSS 241 (501)
Q Consensus 186 ~dg~-------------i~vwd--~~~----~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~----dg~i~iwd~~~ 241 (501)
.+.. |++|+ ++. .+..... |...+..+.|+ ++|++|+.... +..|.++|+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT----EDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC----TTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc----CCCCEEEEEEccCCCCcEEEEEECCC
Confidence 6643 88887 222 2222333 44457788887 88988754432 35899999987
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC---CeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
+.. ....+..+....... +++.++.+++....+ +.|..+|+.++....
T Consensus 269 ~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~----------------------- 319 (693)
T 3iuj_A 269 ENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH----------------------- 319 (693)
T ss_dssp TTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----------------------
T ss_pred CCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----------------------
Confidence 642 234455555555544 555456666665543 568888887653210
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc---EEEEecCCCCCCCCCCCccccc-Cccc
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK---AMTWDIRRSQDAVKPQPMAELD-GHVG 393 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~-~h~~ 393 (501)
...+..|...+. .|+++++.|+... .++ |++||+..+.. ..+. ...+
T Consensus 320 -------------------~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-------~~l~~p~~~ 371 (693)
T 3iuj_A 320 -------------------WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-------REVALPGLG 371 (693)
T ss_dssp -------------------CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-------EEECCSSSS
T ss_pred -------------------cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-------EEeecCCCc
Confidence 012223334443 7788887776655 342 88999875331 2222 2344
Q ss_pred CeEEEEecCC--eEEEEecC---CCcEEEEeCCCccc
Q 010784 394 SVTQLHMDPY--KIVTGGRD---DLRINIWETDTGML 425 (501)
Q Consensus 394 ~v~~l~~~~~--~~l~~gs~---dg~i~iwd~~~~~~ 425 (501)
.+..+.++++ .++.+.+. -++|..||+.+++.
T Consensus 372 ~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 372 SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 5677777777 45544322 27899999987653
No 228
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.10 E-value=9.3e-11 Score=102.12 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=58.8
Q ss_pred CcccccccHHHHHHHHhcCChhhhH-HHHhhChhHHHHcCCchhHHHHHhhhcCccccCCC--CCcchhHHHHHHHHHH
Q 010784 17 TTAIADLNEDAVAHCALNLSLQDIS-NMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGS--LPTVRVREAYLARRIA 92 (501)
Q Consensus 17 ~~~~~~Lp~e~~~~i~~~L~~~~l~-~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 92 (501)
...+..||+|++.+||+||++++|+ ++++|||+|+.+++++.+|+++|++.+. .+... .....|+..|+.+...
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~--~~~~~~~~~~~~Wk~~y~~~~~g 124 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGL--VPEGSADEERDHWQQFYFLSKRR 124 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTC--CCC-----CCSCHHHHHHHHHHC
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCc--ccccccCCCCCChhhhheheecc
Confidence 5578889999999999999999999 9999999999999999999999988732 11111 0234588888776443
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=1.2e-11 Score=115.33 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=108.0
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
++..+++++.||.|+.|| +|+.+..+.. +.+.+..+. .++..+++++.||.|+.||..+++. +...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~----~~g~~~v~~s~dg~l~a~d~~tG~~------~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH----VEEPAFLPDPNDGSLYTLGSKNNEG------LTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CC------SEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE----cCCCEEEEeCCCCEEEEEECCCCce------eeee
Confidence 578999999999999999 7888777765 444444333 4667888888999999999988764 2222
Q ss_pred cCCCC-cee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 255 YGHEK-PIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 255 ~~~~~-~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
..+.. .+. ...+. .+..+++++.|+.|+.||..+++.+...
T Consensus 76 ~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~----------------------------------- 118 (369)
T 2hz6_A 76 PFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL----------------------------------- 118 (369)
T ss_dssp SCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------------
T ss_pred eccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe-----------------------------------
Confidence 22211 010 00111 2346778888999999999988643211
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-----CeEE
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-----YKIV 406 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~l 406 (501)
..+. ...++|++..+++++.++ |+.||.++++.. ..+..+. .....+++ ..++
T Consensus 119 ---------~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------W~~~~~~--~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 119 ---------SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------WNATYFD--YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSSSSCC------CEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred ---------cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE------EeEeccc--ccCccccCCccccceEE
Confidence 1111 123455777888888777 999999998754 3332111 12233343 2444
Q ss_pred EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
+ ++.||.|+.||..+|+.+-++... ...+....++++|..
T Consensus 178 ~-~~~dg~v~a~d~~tG~~~W~~~~~-----~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 178 V-SNGDGLVVTVDSESGDVLWIQNYA-----SPVVAFYVWQREGLR 217 (369)
T ss_dssp E-EETSCEEEEECTTTCCEEEEEECS-----SCEEEEEECTTSSCE
T ss_pred E-ECCCCEEEEEECCCCcEEEEecCC-----CceEEEEEecCCceE
Confidence 4 568999999999999988776421 112234455566643
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=8.4e-08 Score=89.84 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=155.3
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCC---------CCceEE-EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGH---------NGPVST-LSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h---------~~~v~~-l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
.+..++.++.++.|..+| +++.+-.+... ...+.+ +.. ++..++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV------SGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE------ETTEEEEEETTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE------eCCEEEEEcCCCEEEEEECCCCCE
Confidence 356777788889999998 67766444331 222322 232 456788888999999999998874
Q ss_pred cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
................. + ..++.++.++.|..+|..+++.+......................+.+++...
T Consensus 126 ------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (376)
T 3q7m_A 126 ------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD 196 (376)
T ss_dssp ------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT
T ss_pred ------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC
Confidence 32332222111112222 3 36777888999999999999765443321111000000112222455555553
Q ss_pred -CcEEEEEcCCCceEeeeccCCCc----EE---EEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784 325 -SSVVTIDLRTMQKVMTPAICKPI----LH---SFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG 393 (501)
Q Consensus 325 -~~i~~~d~~~~~~~~~~~~~~~~----v~---~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~ 393 (501)
+.+..+|..+++.+......... +. .+...| .+..++.++.++ +..+|..+++.. .... ..
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~------w~~~--~~ 268 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM------WKRE--LG 268 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE------EEEC--CC
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE------eecc--CC
Confidence 47999999999988766532110 00 011111 244566666555 999999987643 2222 22
Q ss_pred CeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 394 ~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
....+....+.++++ +.++.|..+|..+++.+...... ....+..... .+..|+.++ .+|.|.++|..+++
T Consensus 269 ~~~~~~~~~~~l~~~-~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~--~~~~l~v~~--~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 SVNDFIVDGNRIYLV-DQNDRVMALTIDGGVTLWTQSDL----LHRLLTSPVL--YNGNLVVGD--SEGYLHWINVEDGR 339 (376)
T ss_dssp CEEEEEEETTEEEEE-ETTCCEEEEETTTCCEEEEECTT----TTSCCCCCEE--ETTEEEEEC--TTSEEEEEETTTCC
T ss_pred CCCCceEECCEEEEE-cCCCeEEEEECCCCcEEEeeccc----CCCcccCCEE--ECCEEEEEe--CCCeEEEEECCCCc
Confidence 344555555566665 47899999999999887665311 1112222222 356777777 56899999977665
Q ss_pred c
Q 010784 474 C 474 (501)
Q Consensus 474 ~ 474 (501)
.
T Consensus 340 ~ 340 (376)
T 3q7m_A 340 F 340 (376)
T ss_dssp E
T ss_pred E
Confidence 3
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=1.8e-08 Score=102.39 Aligned_cols=247 Identities=12% Similarity=-0.011 Sum_probs=144.3
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEE-----eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVT-----SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
+|...+..++||| ||++|+- |+...+|++|| +++.+.. ..+......++| . +++
T Consensus 126 ~~~~~l~~~~~Sp-------------Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~W----s-Dg~ 186 (693)
T 3iuj_A 126 DGTTALDQLSFSR-------------DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISW----L-GNE 186 (693)
T ss_dssp TSCCEEEEEEECT-------------TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEE----E-TTT
T ss_pred CCcEEEEEEEECC-------------CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEE----e-CCC
Confidence 4666889999999 8898883 44446799999 5554332 111111245677 3 778
Q ss_pred EEEEeeCCC-------------cEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEE-EEEeC---CCeEEE
Q 010784 224 ILASGGEDA-------------TVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLL-VTISK---DSKVRV 285 (501)
Q Consensus 224 ~l~sg~~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l-~s~s~---dg~v~v 285 (501)
.|+.++.+. .|++|++.+... +..++..... |...+..+.++| ++++| ++.+. +..|++
T Consensus 187 ~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 187 GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE--DDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp EEEEEESSCCC-------CCCCEEEEEETTSCGG--GCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEE
T ss_pred EEEEEEecCcccccccccCCCcEEEEEECCCCcc--cceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEE
Confidence 888777764 399999887542 1112333333 445577889998 55555 44432 247888
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEc
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGG 364 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~ 364 (501)
+|+.++.. ....+..+....... ++++|. +++...
T Consensus 264 ~d~~~~~~-------------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 264 KDLSQENA-------------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp EETTSTTC-------------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred EECCCCCC-------------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 88876521 011222233333333 445544 444444
Q ss_pred CC---c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCC--cEEEEeCCCcccccccccCCCCC
Q 010784 365 IG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDL--RINIWETDTGMLANSLLCNYPEE 436 (501)
Q Consensus 365 ~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~ 436 (501)
.+ . |..+|+.++.. .....+..|...+. .|+++ .++++...++ .|++|++..+ ....+.. .
T Consensus 300 ~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~----p 368 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVAL----P 368 (693)
T ss_dssp TTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECC----S
T ss_pred CCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeec----C
Confidence 32 4 88999987642 11234555555554 66665 5666654555 6889998744 3444421 2
Q ss_pred CCcceeeeEeeccccEEEEeecC--CCceEEEeeccCCcc
Q 010784 437 ADISTGCSAMAVSGCRIVTASYG--EPGLLQFRDFSNATC 474 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~~l~s~~~d--~~g~i~~w~~~~~~~ 474 (501)
....+..+.++++++.|+....+ ..+.|+.||+..+..
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 23457778888888766654321 347888998876553
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=9.7e-09 Score=98.42 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=166.7
Q ss_pred cCcEEEEeeC-CCceEEec--CCceeeeccC-CCCceEEEEeeecCC-CCCCEEEEee------------------CCCc
Q 010784 177 TENVLVTSSC-DHSIRLWW--KGSCQRCFKG-HNGPVSTLSDKLLGD-GSGKILASGG------------------EDAT 233 (501)
Q Consensus 177 ~~~~l~s~~~-dg~i~vwd--~~~~~~~~~~-h~~~v~~l~~s~~~~-~~~~~l~sg~------------------~dg~ 233 (501)
||+++..... ++.|.+.| +.++...+.- .......+++. . |++.++++++ .++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~---~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQ---KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEEC---CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeee---ecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 6777776665 45688888 5666653321 23456777763 3 6788888884 3467
Q ss_pred EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC---------------eEEEEECCCCcccccee
Q 010784 234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---------------KVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---------------~v~vwd~~~~~~~~~~~ 298 (501)
+.+.|..+.+. ...+.--. .-..++++| +++++++.+.+. .|.+.|......
T Consensus 177 vtvID~~t~~v------~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----- 243 (595)
T 1fwx_A 177 FTAVDADKWEV------AWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----- 243 (595)
T ss_dssp EEEEETTTTEE------EEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-----
T ss_pred EEEEECCCCeE------EEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-----
Confidence 89999987653 44433211 235567887 566777766543 355555432211
Q ss_pred cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC--Cce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEec
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT--MQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDI 373 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~ 373 (501)
....++..++ +.+.+.|.++ ++. +..+.. .....++.++|||+++++++... |.++|+
T Consensus 244 -------------~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 244 -------------AIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp -------------HHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred -------------eccCCCeeEE---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 0011122222 5699999998 444 444443 33557899999999988888433 999999
Q ss_pred CCCCCC------CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------cccccccccCCCCC
Q 010784 374 RRSQDA------VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GMLANSLLCNYPEE 436 (501)
Q Consensus 374 ~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~~~~~~~~~~~~ 436 (501)
.+.+.. .....+.+... ......++|+|+ ..+++.-.|+.|.+||+.+ .+.+.++..+...+
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG 385 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred cccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc
Confidence 964210 00001122221 346788999999 7777778999999999987 45666776555445
Q ss_pred CCcceeeeEeeccccEEEEeecCCCceE-----------EEeeccCCccc
Q 010784 437 ADISTGCSAMAVSGCRIVTASYGEPGLL-----------QFRDFSNATCP 475 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i-----------~~w~~~~~~~~ 475 (501)
|...-.+..++|||++|+++..-...++ .++|++.+...
T Consensus 386 h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 5555566788999999999876432344 78888655543
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=7.5e-08 Score=97.03 Aligned_cols=274 Identities=12% Similarity=0.048 Sum_probs=163.4
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCC-----------ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG-----------PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~-----------~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
+..++.++.++.|.-+| +|+.+-.+..... ....+.+ .+..|+.++.|+.|..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL------WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence 45666667788888888 7777655543211 0112332 346788888999999999999874
Q ss_pred cccccceeeccCC-C----CceeE-EEEeecCCeEEEEEeC------CCeEEEEECCCCccccceeccccee--------
Q 010784 245 RGQQALKATLYGH-E----KPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTS-------- 304 (501)
Q Consensus 245 ~~~~~~~~~~~~~-~----~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~-------- 304 (501)
+-.+..+ . ..+.. ..+. ++. ++.++. ++.|+.+|..+++.+-.........
T Consensus 151 ------~W~~~~~~~~~~~~~~~~~p~v~--~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 151 ------VWHQNTFEGQKGSLTITGAPRVF--KGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ------EEEEETTTTCCSSCBCCSCCEEE--TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred ------EeeecCCcCcCcCcccccCcEEE--CCE-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 3333322 1 11211 1121 444 444442 7999999999998765433221110
Q ss_pred ------------------cCC---CceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc
Q 010784 305 ------------------VPG---VPVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 305 ------------------~~~---~~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~ 343 (501)
..+ ....+....+.+++.+++ .+..+|.++++.+..++.
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 000 112233345666766643 399999999999877664
Q ss_pred --CC-------CcEEEEEEcCCC---cEEEEEcCCc-EEEEecCCCCCCCCCC--Ccc---cccCcccCe----------
Q 010784 344 --CK-------PILHSFSIMPSK---SLICTGGIGK-AMTWDIRRSQDAVKPQ--PMA---ELDGHVGSV---------- 395 (501)
Q Consensus 344 --~~-------~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~--~~~---~~~~h~~~v---------- 395 (501)
|. ....-+....+| ..++.++.++ ++++|..+++.+.... ++. .+.....++
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 21 112222333467 6788888888 9999999987641100 000 000000000
Q ss_pred --------------EEEEecCC-eEEEEecC-------------------------------------------CCcEEE
Q 010784 396 --------------TQLHMDPY-KIVTGGRD-------------------------------------------DLRINI 417 (501)
Q Consensus 396 --------------~~l~~~~~-~~l~~gs~-------------------------------------------dg~i~i 417 (501)
..++++|+ .++...+. .|.|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 25678887 54444322 278999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
||+.+++.+-.+.. ...+....+..++..++.++ .+|.+++||..+++.
T Consensus 462 ~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 462 WDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQGT--ADGRLVAYHAATGEK 510 (677)
T ss_dssp EETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred EeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEEC--CCCcEEEEECCCCce
Confidence 99999998877742 22345556778888888887 669999999877664
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.99 E-value=7.8e-08 Score=97.10 Aligned_cols=276 Identities=11% Similarity=0.039 Sum_probs=162.5
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCc----------e-EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP----------V-STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~----------v-~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
+..++.++.++.|..+| +|+.+-.+...... + ..+.. .+..|+.++.|+.|..+|..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV------WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE------ECCEEEEEccCCEEEEEECCCCCE
Confidence 45677777788899998 77776655432210 1 11222 345788888999999999999875
Q ss_pred cccccceeeccC--CC---CceeE-EEEeecCCeEEEEEe-----CCCeEEEEECCCCccccceecccce---e------
Q 010784 245 RGQQALKATLYG--HE---KPIKL-MSVAGHKSFLLVTIS-----KDSKVRVWDTSTSSAVRSSCCVGMT---S------ 304 (501)
Q Consensus 245 ~~~~~~~~~~~~--~~---~~v~~-l~~~~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~---~------ 304 (501)
+-.+.. +. ..+.+ ..+. ++..++..+ .+|.|..||.++++.+-........ .
T Consensus 144 ------~W~~~~~~~~~~~~~~~~sP~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 144 ------AWSVDTRADHKRSYTITGAPRVV--NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp ------EEEEECCSCTTSCCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred ------eeeecCcCCCCCCccccCCcEEE--CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 222221 11 11111 1111 444444332 3789999999999876544321100 0
Q ss_pred ----------------cCC---CceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc--
Q 010784 305 ----------------VPG---VPVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI-- 343 (501)
Q Consensus 305 ----------------~~~---~~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~-- 343 (501)
..+ ....+....+.+++.+++ .+..+|.++++.+..++.
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 000 012223344666666654 389999999999987764
Q ss_pred CC-------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCC--C--ccc------------------ccC
Q 010784 344 CK-------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQ--P--MAE------------------LDG 390 (501)
Q Consensus 344 ~~-------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~--~--~~~------------------~~~ 390 (501)
|. ..+.-.....+|+ .++.++.++ ++++|..+++.+.... . ... +..
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~ 375 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKN 375 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCC
Confidence 21 1222222223565 788888888 9999999987641000 0 000 000
Q ss_pred ccc-----------CeEEEEecCC-eEEEEecC---------------------------------------------CC
Q 010784 391 HVG-----------SVTQLHMDPY-KIVTGGRD---------------------------------------------DL 413 (501)
Q Consensus 391 h~~-----------~v~~l~~~~~-~~l~~gs~---------------------------------------------dg 413 (501)
... .-..++++|+ .++...+. +|
T Consensus 376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g 455 (689)
T 1yiq_A 376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG 455 (689)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence 000 0123678887 54444311 47
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
.|..||+.+|+.+-.+..+ .....-.+...+.+++.++ .||.|+.||..+++..
T Consensus 456 ~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagglvf~gt--~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 456 KLIAWDPVKQQAAWEVPYV------TIFNGGTLSTAGNLVFEGS--ADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCeEeEccCC------CCccCccceECCCEEEEEC--CCCcEEEEECCCCccc
Confidence 8999999999988777432 2233346777888999998 6699999998877643
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=2.2e-08 Score=92.13 Aligned_cols=259 Identities=10% Similarity=-0.031 Sum_probs=155.0
Q ss_pred cEEEEeeCCC----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEeccCC
Q 010784 179 NVLVTSSCDH----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSLSSS 242 (501)
Q Consensus 179 ~~l~s~~~dg----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~~~~ 242 (501)
..+++...++ +|.+.| +++.+.++.....+ .+.++ +++++++.+. .++.|.+||+.++
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~s----pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAG----HSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEEC----TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEEC----CCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 4555555455 777999 77888888755556 78887 8999888886 3689999999998
Q ss_pred CccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEE--EECCCCccccceecccceecCCCcee
Q 010784 243 GKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRV--WDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 243 ~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
+. +..+... ......+.++| ++++++++.. +..|.+ +|..+ +... ...+. ..
T Consensus 107 ~v------v~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i------~v~~~-~~ 169 (368)
T 1mda_H 107 LP------IADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLT------KSASC-FH 169 (368)
T ss_dssp CE------EEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEE------ECSSC-CC
T ss_pred CE------EEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEE------ECCCc-eE
Confidence 74 5554322 12345789998 6777777664 467888 88876 1111 11111 22
Q ss_pred eecCCCeEEEEe--CCcEEEEEcCC-----CceEe----eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCC
Q 010784 312 MKCHESMLYIAS--GSSVVTIDLRT-----MQKVM----TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAV 380 (501)
Q Consensus 312 ~~~~~~~~~~~~--~~~i~~~d~~~-----~~~~~----~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~ 380 (501)
+...+...+++. ++.+.+.|+.+ ++... .+.....+. . ++++..++..+.+.+.+.|.......
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~- 244 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGAT- 244 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCE-
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcce-
Confidence 223333344432 23667778776 33221 111223333 3 45544444333444999998753211
Q ss_pred CCCCccccc---------C-cccCeEEEEecCC--eEEEEec---C-----CCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 381 KPQPMAELD---------G-HVGSVTQLHMDPY--KIVTGGR---D-----DLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 381 ~~~~~~~~~---------~-h~~~v~~l~~~~~--~~l~~gs---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
.+..+. + .......++++|+ +++++.. . ++.+.++|+.+++.+.++..+ ..
T Consensus 245 ---v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------~~ 315 (368)
T 1mda_H 245 ---MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------HD 315 (368)
T ss_dssp ---EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------EE
T ss_pred ---EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------CC
Confidence 011110 0 0111222678988 5665533 2 235669999999999988532 25
Q ss_pred eeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
...++|+|||++++.+....++.|.++|..+.+.
T Consensus 316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred cceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 7889999999854444421259999999988764
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.97 E-value=6.5e-08 Score=88.74 Aligned_cols=249 Identities=12% Similarity=0.036 Sum_probs=148.1
Q ss_pred CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+..+..++.++.|..|| +++.+..+..+...+.++.. +.++ .++.++.+ |..+|. +++. ...+..
T Consensus 30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~----~~~g-~l~v~t~~--l~~~d~-~g~~------~~~~~~ 95 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSI----GKDG-TIYFGSDK--VYAINP-DGTE------KWRFDT 95 (330)
T ss_dssp TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEE----TTTT-EECCSSCE--EEEECC-CGGG------GGGSCC
T ss_pred CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEE----ecCC-cEEEecCc--EEEECC-CCcE------EEEEEC
Confidence 34567777888899999 66655554444444555554 2444 55556555 888886 4332 222222
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeC-CcEEEEEcCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASG-SSVVTIDLRT 334 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~~~d~~~ 334 (501)
.........+. +..++.++.++.|..+|.. ++....... .......+... ...+++++. +.+..+|..
T Consensus 96 ~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 96 KKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIVSEDGTIYVGSNDNYLYAINPD- 165 (330)
T ss_dssp -----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTSCEEEECTTSEEEEECTT-
T ss_pred CCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEEcCCCEEEEEcCCCEEEEECCC-
Confidence 22222233333 3357778888999999988 654322211 11122233333 445666665 689999998
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
++....+......+.++...+++.+++.. ++|..+| .+++.. .........+.++..+++ .+.++ +.++
T Consensus 166 g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~------~~~~~~~~~~~~~~~~~~g~l~v~-t~~~ 235 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEK------WNFYAGYWTVTRPAISEDGTIYVT-SLDG 235 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEE------EEECCSSCCCSCCEECTTSCEEEE-ETTT
T ss_pred CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEE------EEEccCCcceeceEECCCCeEEEE-cCCC
Confidence 77776666556667777887788766655 5599999 655432 334444456788888888 66666 4778
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
.|..+|. +++.+..+.. ....+..+.+.++|.+ ..++ .+|.|..+|.
T Consensus 236 gl~~~~~-~g~~~~~~~~-----~~~~~~~~~~~~~g~l-~v~t--~~ggl~~~d~ 282 (330)
T 3hxj_A 236 HLYAINP-DGTEKWRFKT-----GKRIESSPVIGNTDTI-YFGS--YDGHLYAINP 282 (330)
T ss_dssp EEEEECT-TSCEEEEEEC-----SSCCCSCCEECTTSCE-EEEC--TTCEEEEECT
T ss_pred eEEEECC-CCCEeEEeeC-----CCCccccceEcCCCeE-EEec--CCCCEEEECC
Confidence 8888874 5666655532 1223344556556654 4455 4567777774
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=7.6e-10 Score=103.21 Aligned_cols=261 Identities=10% Similarity=-0.006 Sum_probs=136.2
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~ 198 (501)
++..+++|+.|+.+..||..+| +.+..+.. +.+.+..+.. ++..+++++.||.|+.|| +++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~-------------~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHV-------------EEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC------------------CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEc-------------CCCEEEEeCCCCEEEEEECCCCce
Confidence 3556777788999999999986 66666655 4454444444 677888889999999999 6766
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS 278 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s 278 (501)
+..+..+..... ..+|.. ..+..+++|+.|+.|+.||..+++. +..+..+. ...++| .+..+++++
T Consensus 72 ~w~~~~~~~~~~--~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----~~~~~p-~~~~v~~~~ 137 (369)
T 2hz6_A 72 LTKLPFTIPELV--QASPCR-SSDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----ADSLSP-STSLLYLGR 137 (369)
T ss_dssp SEECSCCHHHHH--TTCSCC------CCCCEEEEEEEEECCC---------------------------------EEEEE
T ss_pred eeeeeccCcccc--ccCceE-ecCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----cccccc-cCCEEEEEe
Confidence 655543321110 001100 1355788899999999999999874 44443332 134455 567888899
Q ss_pred CCCeEEEEECCCCccccceecccceecCCCceeeec-CCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784 279 KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS 356 (501)
Q Consensus 279 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~ 356 (501)
.|+.|+.||.++++.+...... ........-.. ....+++++ ++.+..||.++++.+..+......+....++++
T Consensus 138 ~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~d 214 (369)
T 2hz6_A 138 TEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE 214 (369)
T ss_dssp EEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTS
T ss_pred cCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCC
Confidence 9999999999999765443211 11111110000 113455544 468999999999998877643333344455666
Q ss_pred CcEEEE---EcCCcEEEEecCCCC----CCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784 357 KSLICT---GGIGKAMTWDIRRSQ----DAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 357 ~~~l~~---~~~d~i~iwd~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~ 422 (501)
+...+. .+++.++.+|..+++ .. ..+.. .+.+.+... .+..+..++.||.++.++...
T Consensus 215 g~~~v~~~~~~~~~l~~ld~~tG~~~~~~~------W~~~~-~~~~~sp~~-~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 215 GLRKVMHINVAVETLRYLTFMSGEVGRITK------WKYPF-PKETEAKSK-LTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp SCEEECCEEEEHHHHHHHHHHHHHHHHHHT------SCCCC-CCHHHHHHH-SEEEECBEECSSCEECCEEEE
T ss_pred ceEeccceeecccceeeeehhcCCccccee------eeecc-Ccccccccc-ccceEEEecccCCEEecCccc
Confidence 654211 112226777776654 32 11111 111110001 124444556899999988763
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.92 E-value=4.2e-06 Score=74.02 Aligned_cols=250 Identities=10% Similarity=0.007 Sum_probs=145.1
Q ss_pred EEeecCCeeeEEEEeccccccc----ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce
Q 010784 124 FSTQGSSIQNIKIDNFLSESYY----RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC 198 (501)
Q Consensus 124 ~~~~g~~d~~i~vw~~~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~ 198 (501)
+|..+. .+.|+.+++...... ...+......+..++|.+. ++.++++-..++.|.+++ .+..
T Consensus 3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~------------~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV------------DKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT------------TTEEEEEETTTTEEEEEESSSCC
T ss_pred EEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecC------------CCEEEEEECCCCEEEEEecCCCC
Confidence 343333 346777777643110 1112222345778999873 345556666678999998 4443
Q ss_pred eeec-cCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784 199 QRCF-KGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 199 ~~~~-~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 276 (501)
...+ .........+++. +++. ++++-...+.|.+++++.... .............++++|.++.++++
T Consensus 70 ~~~~~~~~~~~p~~ia~d----~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALD----HLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp CEEEECTTCCCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCccEEEEE----ecCCeEEEEECCCCEEEEEEcCCCCE------EEEEECCCCCccEEEEeeCCCEEEEE
Confidence 3333 2222466888886 5544 445555677899999875432 11122122345788998745555555
Q ss_pred EeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc
Q 010784 277 ISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM 354 (501)
Q Consensus 277 ~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~ 354 (501)
... .+.|..+++..... . .+ ....-.....++++
T Consensus 140 ~~~~~~~~I~~~~~dg~~~-~-----------------------------------------~~--~~~~~~~P~gia~d 175 (267)
T 1npe_A 140 DWNRDNPKIETSHMDGTNR-R-----------------------------------------IL--AQDNLGLPNGLTFD 175 (267)
T ss_dssp ECCSSSCEEEEEETTSCCC-E-----------------------------------------EE--ECTTCSCEEEEEEE
T ss_pred ECCCCCcEEEEEecCCCCc-E-----------------------------------------EE--EECCCCCCcEEEEc
Confidence 433 36777777653211 0 00 00112356789999
Q ss_pred CCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccC
Q 010784 355 PSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 355 ~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 432 (501)
+++..|..+. ..+ |..+|....... ..+.+ ......++...+.++++....+.|.++|..+++.+.++..+
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~------~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGRR------KVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEE------EEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred CCCCEEEEEECCCCEEEEEecCCCceE------EEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence 9866555444 445 999998754321 11121 23346777765577777667889999999999988888422
Q ss_pred CCCCCCcceeeeEeecccc
Q 010784 433 YPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~ 451 (501)
.......+++.|++.
T Consensus 249 ----~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 249 ----KQTRLYGITIALSQC 263 (267)
T ss_dssp ----SCCCCCCEEEECSCC
T ss_pred ----cccccceeeecCccC
Confidence 122356788888765
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.89 E-value=6.9e-06 Score=84.94 Aligned_cols=325 Identities=8% Similarity=-0.013 Sum_probs=183.3
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCC-c---ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-A---RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.|.+|..+++|.+.+... + -+..||..++ +. ..+.... . .|.++...+ +|++.+.. .
T Consensus 89 ~I~~i~~d~~g~lWigT~-~-Gl~~yd~~~~-~f-~~~~~~~~~~~~~i~~i~~d~-------------~g~lwi~t-~- 149 (795)
T 4a2l_A 89 ISRIVKTDSQGRVWIGTR-D-GLSRYDEEKD-IF-QNFFYEKNGKHLQVNGIEEIS-------------PEQLLIST-P- 149 (795)
T ss_dssp CEEEEEECTTSCEEEEES-S-CEEEEETTTT-EE-EEECCEETTEECCCCEEEEEE-------------TTEEEEEE-T-
T ss_pred ceeEEEECCCCCEEEEeC-C-chheeCCCCC-eE-EeccccccCCCceEEEEEECC-------------CCCEEEEE-C-
Confidence 388999998886665433 3 4788887653 22 2222111 1 188888776 56665544 3
Q ss_pred CceEEec-CCceeeeccC-C-CCc-eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee-ccCCCCcee
Q 010784 188 HSIRLWW-KGSCQRCFKG-H-NGP-VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT-LYGHEKPIK 262 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~-h-~~~-v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~ 262 (501)
+-|..|| .......+.. + ... |.++... .++. +..|..++.|..|+..++.. ... .......|.
T Consensus 150 ~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d----~~g~-lwigt~~~Gl~~~~~~~~~~------~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 150 EGLIMFDIKESKFIDDSFSTAMHKTIASTLYR----QGDQ-IYIGTSTDGLYTYSITQKTF------EKVIPILGTKQIQ 218 (795)
T ss_dssp TEEEEEETTTTEEECSSSCHHHHTCCEEEEEE----ETTE-EEEEESSSCEEEEETTTCCE------EECC----CCCEE
T ss_pred CceEEEECCCCEEEeccCCCCCCcceEEEEEC----CCCC-EEEEECCCCEEEEeCCCCeE------EEecCCCCCCeeE
Confidence 4488888 2222222211 1 112 7777763 4554 44466655688898876542 111 112345688
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc--cceecCCCceeeecC-CCeEEEEeCCcEEEEEcCCCceEe
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV--GMTSVPGVPVDMKCH-ESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
++.... ++. +..|+.++-+..||..+++........ ........+.++..+ ...+++++.+.+.++|..+.+...
T Consensus 219 ~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~ 296 (795)
T 4a2l_A 219 AILQQS-PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFAS 296 (795)
T ss_dssp EEEEEE-TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEE
T ss_pred EEEEcC-CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEE
Confidence 887765 454 455555555899998776432111000 000112335555544 456777777789999987765443
Q ss_pred eec-------cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784 340 TPA-------ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 340 ~~~-------~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
... .....|.++...++|.+.+....++|..|+........-......-.-....|.++..+++ .+.++ +.
T Consensus 297 ~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~ 375 (795)
T 4a2l_A 297 YSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TN 375 (795)
T ss_dssp ECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ES
T ss_pred EecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-EC
Confidence 221 1235699999999988766555566999987654321000000000112456999999888 66665 57
Q ss_pred CCcEEEEeCCCcccccccccC-CC--CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 412 DLRINIWETDTGMLANSLLCN-YP--EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 412 dg~i~iwd~~~~~~~~~~~~~-~~--~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
++-|..|+..+++........ .+ ......|.++...++|+.|..|+ .++-|..++...
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt--~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT--HAGGLSILHRNS 436 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE--TTTEEEEEETTT
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe--CcCceeEEeCCC
Confidence 777999998776543222110 00 01245688888888998455555 334566776543
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=2.6e-05 Score=80.66 Aligned_cols=307 Identities=8% Similarity=0.007 Sum_probs=185.3
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-------cCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-------DHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.|.++..+++|.+.+... . -+.+++..++ ....... -....|.++...+ +|+ |..|
T Consensus 264 ~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~D~-------------~g~-lWig 326 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWIGTF-N-DLNIYHEGTD-SFASYSSNPVENGSLSQRSVRSIFMDS-------------QGG-MWLG 326 (795)
T ss_dssp BEEEEEECTTSCEEEEES-S-CEEEEETTTT-EEEEECCCTTSTTSCSSSCEEEEEECT-------------TSC-EEEE
T ss_pred eEEEEEEcCCCCEEEEeC-C-hhheEcCCCC-eEEEEecCCCCCCCCCCCcEEEEEEeC-------------CcC-EEEE
Confidence 388888888877666443 3 4777887653 2222211 1235688988876 555 5556
Q ss_pred eCCCceEEec-CCceeeeccC-------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-
Q 010784 185 SCDHSIRLWW-KGSCQRCFKG-------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY- 255 (501)
Q Consensus 185 ~~dg~i~vwd-~~~~~~~~~~-------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~- 255 (501)
+.++-|..++ .......+.. ....|.++.. +.+|. |..|+.++-|..|+..++.. ..+.
T Consensus 327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~----d~~g~-lWiGt~~~Gl~~~~~~~~~~-------~~~~~ 394 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE----DKDKN-LWIGTNDGGLNLYNPITQRF-------TSYTL 394 (795)
T ss_dssp ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE----CTTSC-EEEEESSSCEEEECTTTCCE-------EEECC
T ss_pred ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE----CCCCC-EEEEECCCCeEEEcCCCCcE-------EEEec
Confidence 6667788887 2222222211 2346888876 35554 55677787899999876542 1111
Q ss_pred --------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeCCc
Q 010784 256 --------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASGSS 326 (501)
Q Consensus 256 --------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (501)
.....|.++...+ ++..|..|+.++-|..+|..+++...... .........+.++..+ ...+++++.+.
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lwigt~~G 472 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNSQLVNENVYAILPDGEGNLWLGTLSA 472 (795)
T ss_dssp C------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECT-TTSCCSCSCEEEEEECSSSCEEEEESSC
T ss_pred CCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeec-CCCCcCCCeeEEEEECCCCCEEEEecCc
Confidence 1235688888764 55547778887789999988765322110 0000122344555544 35567777778
Q ss_pred EEEEEcCCCceEeeec------cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCc-ccccCcccCeEEEE
Q 010784 327 VVTIDLRTMQKVMTPA------ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPM-AELDGHVGSVTQLH 399 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~------~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~ 399 (501)
+..+|..+++...... .....|.++...++|.+.+... +++..||..+.+.. .... ..-......|.++.
T Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~--~~~~~~~~~l~~~~i~~i~ 549 (795)
T 4a2l_A 473 LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDIQ--KASILPVSNVTKLFTNCIY 549 (795)
T ss_dssp EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEEE--ECCCSCSCGGGGSCEEEEE
T ss_pred eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeEE--EecCCCCCCCCCCeeEEEE
Confidence 9999988765443221 1236789999999998777665 66999998764320 0000 00012345789999
Q ss_pred ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 400 MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 400 ~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
.+++ .+.++. .. -|..||..+++.. .+.... .-....|.++...++|++.+++
T Consensus 550 ~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~-gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 550 EASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTN-GLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp ECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGG-TCSCSCEEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCC-CCchhheEEEEECCCCCEEEEc
Confidence 9888 666654 44 5888998765433 221111 1124468888888889877766
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.85 E-value=9.9e-07 Score=81.69 Aligned_cols=232 Identities=7% Similarity=0.055 Sum_probs=134.1
Q ss_pred CCCCE-EEEeeCCCcEEEEeccCCCccccccceeecc------C-CCCceeEEEEeecCCeEEEEEeCC------CeEEE
Q 010784 220 GSGKI-LASGGEDATVRLWSLSSSGKRGQQALKATLY------G-HEKPIKLMSVAGHKSFLLVTISKD------SKVRV 285 (501)
Q Consensus 220 ~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~v~~l~~~~~~~~~l~s~s~d------g~v~v 285 (501)
.++++ +++|..++.|.++|+.+.... .+...++. . ....-..+...| ++ +++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC--ceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEE
Confidence 34455 455667889999999765321 11233331 0 111234566776 55 77776665 78999
Q ss_pred EECCCCccccceecccceecCCCceeeecC--CCeEEEEe--------------------CCcEEEEEcCCCceEeeecc
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--ESMLYIAS--------------------GSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~i~~~d~~~~~~~~~~~~ 343 (501)
+|..+.+.+....... ......+.+.++ .+.++.+. +++|.+||+.+++.+.++..
T Consensus 169 lD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp ECTTTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EECCCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999987665443211 122233334333 34344442 46899999999888777765
Q ss_pred C-C-CcEEEEEE--cCCCcEEEEEcC------Cc-EEEEecCCCCCCC------CC----CCcc----cccCcccCeEEE
Q 010784 344 C-K-PILHSFSI--MPSKSLICTGGI------GK-AMTWDIRRSQDAV------KP----QPMA----ELDGHVGSVTQL 398 (501)
Q Consensus 344 ~-~-~~v~~v~~--~~~~~~l~~~~~------d~-i~iwd~~~~~~~~------~~----~~~~----~~~~h~~~v~~l 398 (501)
. . .....+.| +|+++++.+++. ++ |.+|....++... .. ..+. .+.+-......|
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 3 1 23455655 999998887775 33 7655543321000 00 0000 000002357889
Q ss_pred EecCC--eEEEEecCCCcEEEEeCCC---cccccccccCCC---------CCCCcceeeeEeeccccEEEEee
Q 010784 399 HMDPY--KIVTGGRDDLRINIWETDT---GMLANSLLCNYP---------EEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 399 ~~~~~--~~l~~gs~dg~i~iwd~~~---~~~~~~~~~~~~---------~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
.++++ .++++.-..+.|.+||+.. .+++..+..+.. ..-...-..++++|||++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999 5556666688999999863 344555533200 00011357799999999999987
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=1e-06 Score=76.48 Aligned_cols=200 Identities=11% Similarity=-0.085 Sum_probs=134.0
Q ss_pred ceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCC
Q 010784 260 PIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTM 335 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~ 335 (501)
....+.+++ ++.++++.+. ++.|.++|+.+++.+...... .......+...++.+++++ .+.+.++|..+.
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----DSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECC----TTCCEEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecC----CCcceEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence 357899986 4655555543 689999999999876543321 1112234555677888887 458999999999
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc--c---cCeEEEEecCCeEEEEe
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH--V---GSVTQLHMDPYKIVTGG 409 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~~~~~~l~~g 409 (501)
+.+.++...... ...+++||+.++++..++ |.++|..+.+.. ..+.-- . ..++.+.+...++++..
T Consensus 97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~------~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLI------KKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEE------EEEEECCCCcccccceeEEEECCEEEEec
Confidence 998887643111 233455766665555455 999999886543 333321 1 13677888844777777
Q ss_pred cCCCcEEEEeCCCcccccccccCC--------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 410 RDDLRINIWETDTGMLANSLLCNY--------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 410 s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..++.|.+.|..+++.+.++.... ........+.++|+|+++.+++++. ..+.+.+.++....
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLHLVR 239 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEEECC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEeccc
Confidence 678899999999999988885321 0011235689999999876666654 56888888887654
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.82 E-value=5.5e-07 Score=77.18 Aligned_cols=182 Identities=7% Similarity=-0.036 Sum_probs=126.1
Q ss_pred ceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCc--eeeecCCCeEEEEe--CCcEEEEEcC
Q 010784 260 PIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVP--VDMKCHESMLYIAS--GSSVVTIDLR 333 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~i~~~d~~ 333 (501)
....+.|+ ++.++.+.+.+| .|+++|+.+++.+.... ..... ..+...++.+++++ .+.+.++|..
T Consensus 44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------LGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------CCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred ccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEe------cCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 35788887 567777777766 89999999997765442 22333 33566778888887 5689999999
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC----cc-cCeEEEEecCCeEEE
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG----HV-GSVTQLHMDPYKIVT 407 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~----h~-~~v~~l~~~~~~~l~ 407 (501)
+.+.+.++...... ..+ ++++..|+.+.... |.++|..+.+.. .++.. .. ..++.+.+...++++
T Consensus 116 t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~------~~I~V~~~g~~~~~lNELe~~~G~lya 186 (262)
T 3nol_A 116 NLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPV------RTITVTAHGEELPELNELEWVDGEIFA 186 (262)
T ss_dssp TCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEE------EEEECEETTEECCCEEEEEEETTEEEE
T ss_pred cCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEE------EEEEeccCCccccccceeEEECCEEEE
Confidence 99999888753221 233 34666555555444 999999987654 33322 11 335567777457777
Q ss_pred EecCCCcEEEEeCCCcccccccccCCC-------CCCCcceeeeEeeccccEEEEeec
Q 010784 408 GGRDDLRINIWETDTGMLANSLLCNYP-------EEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
..-.+..|.+.|..+++.+..+..... .......+.++|+|+++.|++.+.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 776788999999999999888754311 111345689999999888877764
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=6.6e-06 Score=71.45 Aligned_cols=191 Identities=10% Similarity=0.018 Sum_probs=131.3
Q ss_pred eEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 209 VSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
...+.|+ +++.++++.+. ++.|++.|+.+++. +..+.- .......+.+. ++.+.++.-.++.+.+
T Consensus 23 ~~Gl~~~----~dg~Lyvstg~~~~s~v~~iD~~tg~v------~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 23 TQGLVYA----ENDTLFESTGLYGRSSVRQVALQTGKV------ENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEEEEC----STTEEEEEECSTTTCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred cccEEEe----CCCeEEEECCCCCCCEEEEEECCCCCE------EEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence 5789986 55655555443 57999999999874 444321 11222345554 4566666667899999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEEEEEEcCCCcE
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILHSFSIMPSKSL 359 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~ 359 (501)
+|..+.+.+..+... ....+.+..++..++++.++ .+.++|..+.+.+..+.... ..++.+.+. ++.+
T Consensus 91 iD~~t~~v~~~i~~g-----~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-----MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EETTTTEEEEEEECC-----SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EECCCCcEEEEEECC-----CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999988765543221 14456677777888877654 89999999988877666321 236788887 7766
Q ss_pred EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784 360 ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 360 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~ 423 (501)
++....+. |.+.|..+++.. ..+... ....+.|+++|+ ++++++...+.|.+.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLL------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEE------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEE------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 66665555 999999998754 333211 135689999998 89999988999999988654
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=9e-06 Score=71.86 Aligned_cols=219 Identities=12% Similarity=0.015 Sum_probs=138.7
Q ss_pred CCCceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 111 KPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 111 ~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
..+..++++++ +.++++....+.|.+++...+ .....+.........+++.+. .+.++++-...+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~------------~~~lyv~d~~~~~ 102 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHL------------GRTIFWTDSQLDR 102 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETT------------TTEEEEEETTTTE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEec------------CCeEEEEECCCCE
Confidence 34789999984 566666667789999998753 333333333346788999872 2455566666788
Q ss_pred eEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 190 IRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 190 i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
|.+++ .+.....+. ........+++. +++..|+.+.. .+.|..++++.... .......-.....+
T Consensus 103 I~~~~~~g~~~~~~~~~~~~~P~~i~vd----~~~g~lyv~~~~~~~~~I~~~~~dg~~~------~~~~~~~~~~P~gi 172 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTD----PVRGNLYWTDWNRDNPKIETSHMDGTNR------RILAQDNLGLPNGL 172 (267)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEE----TTTTEEEEEECCSSSCEEEEEETTSCCC------EEEECTTCSCEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCccEEEEe----eCCCEEEEEECCCCCcEEEEEecCCCCc------EEEEECCCCCCcEE
Confidence 99988 443333332 122456788886 65555554443 46888888765331 11111223456789
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeec
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~ 342 (501)
++++.++.++++-...+.|.++|......... ......+..+....+.++++.. +.|..+|..+++.+..+.
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV------LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEE------EECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEE------ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 99975566667777788999999976432111 1123345666666777888764 489999999998887776
Q ss_pred cCC-CcEEEEEEcCCCc
Q 010784 343 ICK-PILHSFSIMPSKS 358 (501)
Q Consensus 343 ~~~-~~v~~v~~~~~~~ 358 (501)
... .....+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 433 2467788887754
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=9.4e-07 Score=75.72 Aligned_cols=182 Identities=8% Similarity=-0.025 Sum_probs=126.9
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCce
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQK 337 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~ 337 (501)
....+.|+ ++.++++.+.+|.|+++|+.+++.+... . ........+...++.+++++ ++.+.++|..+.+.
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l----~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R----LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E----CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C----CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence 35788886 5788888889999999999999876544 1 11112233667778888887 56899999999999
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cc---cCeEEEEecCCeEEEEecC
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HV---GSVTQLHMDPYKIVTGGRD 411 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~~l~~gs~ 411 (501)
+.++..... -..++ ++++.|+.+..+. |.++|..+.+.. .++.- +. ..++.+.|...++++..-.
T Consensus 129 ~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~------~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~ 199 (268)
T 3nok_A 129 ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV------GAVQVKLRGQPVELINELECANGVIYANIWH 199 (268)
T ss_dssp EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE------EEEEeCCCCcccccccccEEeCCEEEEEECC
Confidence 988875322 23444 4666666665444 999999987654 33322 11 2456777775577777767
Q ss_pred CCcEEEEeCCCcccccccccCC--------CCCCCcceeeeEeeccccEEEEee
Q 010784 412 DLRINIWETDTGMLANSLLCNY--------PEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 412 dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
+..|.+.|..+++.+..+.... ........++++++|+++.|++.+
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 8899999999999988875431 011234578999999877666665
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.76 E-value=2.9e-07 Score=84.91 Aligned_cols=224 Identities=9% Similarity=0.011 Sum_probs=129.9
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEee--CCCceEEec--CCceeeec-------cCCCCceEEEEeeecCCCCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSS--CDHSIRLWW--KGSCQRCF-------KGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd--~~~~~~~~-------~~h~~~v~~l~~s~~~~~~~ 222 (501)
..+..+++++ +|+++++.. .++.++||. .++ +..+ ..|...+..+++. +++
T Consensus 17 ~~p~~va~~~-------------~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d----~~g 78 (343)
T 2qe8_A 17 LAPGNITLTP-------------DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSD----GNG 78 (343)
T ss_dssp SCEEEEEECT-------------TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEEC----SSS
T ss_pred CCcceEEECC-------------CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEc----CCC
Confidence 6788999998 788888853 234355554 343 2222 2355678999995 777
Q ss_pred CEEEEeeC-----CCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeecCCeEEEEEe---CCCeEEEEEC
Q 010784 223 KILASGGE-----DATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDT 288 (501)
Q Consensus 223 ~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~ 288 (501)
+++++-.. ++.|.+||+.+++. +..+. .+...+..+++.+.++..+++.. .++.|.+||+
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQL------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEE------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeE------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 76665433 57899999987652 22222 22345688899875566666665 6788999998
Q ss_pred CCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE-EEEEcCCCcEEEEEcCCc
Q 010784 289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH-SFSIMPSKSLICTGGIGK 367 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~ 367 (501)
.+++..+ .+..|..... ...+.++|..+.+.+.++
T Consensus 153 ~~g~~~r--------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 188 (343)
T 2qe8_A 153 QTGLAAR--------------------------------------------VLQGYPGIAPEDIDLVIDGVPVQIGQPDG 188 (343)
T ss_dssp TTCCEEE--------------------------------------------ECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred CCCCEEE--------------------------------------------EecCCCcccccccceeECCEEEEeccCCC
Confidence 8764311 1111111000 022233555555544444
Q ss_pred -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-cEEEEeCCC---c-----ccccccccCCCCC
Q 010784 368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDT---G-----MLANSLLCNYPEE 436 (501)
Q Consensus 368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~---~-----~~~~~~~~~~~~~ 436 (501)
++.|. ..++.|+++|+ +.+..+..++ .+..++... + +....+.. .+
T Consensus 189 ~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g 245 (343)
T 2qe8_A 189 TVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER---YS 245 (343)
T ss_dssp CEECCC--------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE---EE
T ss_pred ceecee--------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe---cc
Confidence 43221 23678999999 5444444444 455444321 1 11111110 01
Q ss_pred CCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 437 ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+......++++++|.++++.. ..+.|.+|+..
T Consensus 246 ~~g~pdgia~d~~G~l~va~~--~~~~V~~~d~~ 277 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDL--AHSAIGVITSA 277 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEG--GGTEEEEEETT
T ss_pred cCCCCceEEECCCCCEEEEcc--CCCeEEEEECC
Confidence 223456799999999888877 56899999973
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=0.0001 Score=76.01 Aligned_cols=316 Identities=11% Similarity=0.014 Sum_probs=183.0
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-------CCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-------HKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.|.++..+++|.+.+.... -+.++|..++ +....... ....|.++...+ +|. |..|
T Consensus 212 ~i~~i~~d~~g~lwigt~~--Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~-------------~g~-lWig 274 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK--GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLK-------------DNK-LWIA 274 (781)
T ss_dssp SEEEEEECTTCCEEEEETT--EEEEEETTTT-EEEC-----------CCCCEEEEEECT-------------TSE-EEEE
T ss_pred ceeEEEEcCCCCEEEEeCC--cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECC-------------CCC-EEEE
Confidence 4788888888866654433 4777887653 22221111 235688888766 555 4455
Q ss_pred eCCCceEEec-CCceeeecc---------------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 185 SCDHSIRLWW-KGSCQRCFK---------------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 185 ~~dg~i~vwd-~~~~~~~~~---------------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
...+-|.++| .......+. -....|.++.. +.+| .|..|+.++-|..++......
T Consensus 275 t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~----D~~g-~lWigt~~~Gl~~~~~~~~~~---- 345 (781)
T 3v9f_A 275 TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ----DSFN-NIWIGTWGGGINFISNAPPTF---- 345 (781)
T ss_dssp ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE----CSSC-CEEEEEBSSCEEEECSSCCSC----
T ss_pred eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE----eCCC-CEEEEecCCeEEEeCCCCCcc----
Confidence 5545577787 222211111 13456888876 3555 466677777888898776532
Q ss_pred cceeecc----------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CC
Q 010784 249 ALKATLY----------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ES 317 (501)
Q Consensus 249 ~~~~~~~----------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (501)
..+. .....|.++.... ++ .|..|+.++-|..||..++..... . .........+.++..+ ..
T Consensus 346 ---~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~-~-~~~~~~~~~v~~i~~d~~g 418 (781)
T 3v9f_A 346 ---HTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAIYN-K-ENRELLSNSVLCSLKDSEG 418 (781)
T ss_dssp ---EEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTS
T ss_pred ---eeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEEEc-c-CCCCCCCcceEEEEECCCC
Confidence 1111 1235688887763 34 466677677799999876532211 0 0001122345566554 45
Q ss_pred eEEEEeC-CcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc---Cc
Q 010784 318 MLYIASG-SSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD---GH 391 (501)
Q Consensus 318 ~~~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~---~h 391 (501)
.+++++. +.+..+|..+++...... .....|.++...+++.+.+... ++|..+|..+++.. ...... ..
T Consensus 419 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~----~~~~~~~~~~~ 493 (781)
T 3v9f_A 419 NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI----HHYDTSNSQLL 493 (781)
T ss_dssp CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC----EEECTTTSSCS
T ss_pred CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE----ecccCcccccc
Confidence 6777775 588889887765433221 2356799999988887666554 66999998775432 111111 11
Q ss_pred ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
...|.++..+++ .+.++. .++-|..||..+++.. .+... ..-....|.++...++|.+.++. ..|.|..||..
T Consensus 494 ~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~-~~~~~-~~l~~~~i~~i~~d~~g~lWi~T---~~Glv~~~d~~ 567 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR-KFNQY-EGFCSNTINQIYRSSKGQMWLAT---GEGLVCFPSAR 567 (781)
T ss_dssp CSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE-EECTT-TTCSCSCEEEEEECTTSCEEEEE---TTEEEEESCTT
T ss_pred cceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE-EccCC-CCCCCCeeEEEEECCCCCEEEEE---CCCceEEECCC
Confidence 357899999888 776664 4344888988765432 23211 11234568888888888866654 33654666644
Q ss_pred C
Q 010784 471 N 471 (501)
Q Consensus 471 ~ 471 (501)
.
T Consensus 568 ~ 568 (781)
T 3v9f_A 568 N 568 (781)
T ss_dssp T
T ss_pred C
Confidence 3
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=3.6e-05 Score=79.38 Aligned_cols=308 Identities=9% Similarity=-0.031 Sum_probs=180.4
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--------------ccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--------------SDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--------------~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
.|.++..+++|.+.+.... +-+.+++..++ ...... .-....|.++...+ +
T Consensus 259 ~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-------------~ 323 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWIATEL-NGIMILDLQQN-QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-------------F 323 (781)
T ss_dssp CEEEEEECTTSEEEEEESS-SCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECS-------------S
T ss_pred eEEEEEECCCCCEEEEeCC-CCeEEECCCCC-eeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-------------C
Confidence 4888888888887764432 34566776653 221111 11345688887766 5
Q ss_pred CcEEEEeeCCCceEEec-CCceeeecc----------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784 178 ENVLVTSSCDHSIRLWW-KGSCQRCFK----------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~----------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 246 (501)
|+ |..|..++-|..++ .......+. .....|.++.. +.++. |..|+.++-|..+|..++..
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~----d~~g~-lWigt~~~Gl~~~~~~~~~~-- 395 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD----DGQGK-LWIGTDGGGINVFENGKRVA-- 395 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE----CTTSC-EEEEEBSSCEEEEETTEEEE--
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE----cCCCC-EEEEeCCCcEEEEECCCCeE--
Confidence 55 55566667788887 322222221 12356888876 24454 55667667788898765431
Q ss_pred ccccee-eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeC
Q 010784 247 QQALKA-TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASG 324 (501)
Q Consensus 247 ~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 324 (501)
.... ........|.++...+ ++ .|..|+.++-|..+|..+++....... ......+.++..+ ...+++++.
T Consensus 396 --~~~~~~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 396 --IYNKENRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNTRLKKFQIIELE---KNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp --ECC-----CCCSBEEEEEECT-TS-CEEEEETTEEEEEECSSSCEEEECCST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred --EEccCCCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcCCCCcEEEeccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence 0000 0012345688887763 44 455677777799999877643211100 0112344555554 456777777
Q ss_pred CcEEEEEcCCCceEeeeccC-----CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc-CcccCeEEE
Q 010784 325 SSVVTIDLRTMQKVMTPAIC-----KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD-GHVGSVTQL 398 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l 398 (501)
+.+..+|..+++........ ...|.++...++|.+.+....+++..+|..+.+.. ...... .....|.++
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~----~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR----KFNQYEGFCSNTINQI 544 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE----EECTTTTCSCSCEEEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE----EccCCCCCCCCeeEEE
Confidence 88999998876543322211 46789999999998777665566888998764321 000001 124578999
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
..+++ .+.++. .+|.|..||..+++. ..+.... .-....|.++...++|.+.+++
T Consensus 545 ~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~-gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 545 YRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKE-GLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGG-TCSCCCCCEEEECSSSCEEEEC
T ss_pred EECCCCCEEEEE-CCCceEEECCCCCcE-EEccccC-CCCCceEEEEEECCCCCEEEEc
Confidence 99888 776664 567558899876653 2222111 1123457788888888877765
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=6.7e-06 Score=69.88 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=124.3
Q ss_pred CceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCc--eeeecCCCeEEEEe--CCcEEEEEc
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVP--VDMKCHESMLYIAS--GSSVVTIDL 332 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~i~~~d~ 332 (501)
.....+.|+ ++.++.+.+.+| .|+.+|+.+++.+.... .+... ..+...++.++.++ .+.+.++|.
T Consensus 21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~------l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAE------VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEE------CCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEe------CCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 456788987 466777777654 89999999997765432 22222 34455677888887 468999999
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cc---cCeEEEEecCCeEE
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HV---GSVTQLHMDPYKIV 406 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~~l 406 (501)
.+.+.+.++...... ..++ +++..|+.+..+. |.++|..+.+.. .++.- +. ..++.+.+...+++
T Consensus 93 ~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~------~~I~V~~~g~~~~~lNeLe~~~G~ly 163 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQV------GSIKVTAGGRPLDNLNELEWVNGELL 163 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEE
T ss_pred CcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEE------EEEEEccCCcccccceeeEEeCCEEE
Confidence 999999888753322 3444 4555554444344 999999986654 33332 11 34567777755777
Q ss_pred EEecCCCcEEEEeCCCcccccccccCCC--------CCCCcceeeeEeeccccEEEEeec
Q 010784 407 TGGRDDLRINIWETDTGMLANSLLCNYP--------EEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
+..-.+..|.+.|..+|+.+..+..... .......++++++|+++.|++.+.
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7766788999999999999888754311 012345689999998877777663
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.70 E-value=7.6e-06 Score=70.14 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=123.2
Q ss_pred eeeeccCCCC--ceEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCe
Q 010784 198 CQRCFKGHNG--PVSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSF 272 (501)
Q Consensus 198 ~~~~~~~h~~--~v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~ 272 (501)
.+.++. |.. -...+.|+ ++.++.+.+.+| .|+++|+.+++. +..+...... -..+.+. ++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-----~~~LyestG~~g~S~v~~vD~~Tgkv------~~~~~l~~~~FgeGit~~--g~~ 98 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-----NGYFYESTGLNGRSSIRKVDIESGKT------LQQIELGKRYFGEGISDW--KDK 98 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-----TTEEEEEEEETTEEEEEEECTTTCCE------EEEEECCTTCCEEEEEEE--TTE
T ss_pred EEEEec-CCCCcccceEEEE-----CCEEEEECCCCCCceEEEEECCCCcE------EEEEecCCccceeEEEEe--CCE
Confidence 344553 333 34678884 566777777766 899999999874 4444332221 1234443 556
Q ss_pred EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccC--C---C
Q 010784 273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAIC--K---P 346 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~--~---~ 346 (501)
+.+..-.++.+.+||..+.+.+..+. ..+..+.+..+...++++.++ .+.++|..+.+.+.++... . .
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~ti~------~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~ 172 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRSFN------YDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP 172 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEE------CSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred EEEEEeeCCEEEEEECccCcEEEEEE------CCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence 66666678999999999987655443 334556677777777777654 7999999999888776542 1 3
Q ss_pred cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC--cc-c---ccCcccCeEEEEecCC--eEEEEe
Q 010784 347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP--MA-E---LDGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~--~~-~---~~~h~~~v~~l~~~~~--~~l~~g 409 (501)
.++.+.+. +|++++..-.+. |.+.|..+++....... +. . ...-....+.|+++|+ +++++|
T Consensus 173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 35567776 777666665555 99999999875411000 00 0 0011235689999997 888887
No 252
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.69 E-value=3.1e-06 Score=78.43 Aligned_cols=201 Identities=10% Similarity=0.064 Sum_probs=122.2
Q ss_pred CCcEEE-eecCCeeeEEEEecccc---cccceecc------c-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-
Q 010784 120 NNDIFS-TQGSSIQNIKIDNFLSE---SYYRATLS------D-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD- 187 (501)
Q Consensus 120 ~~~~~~-~~g~~d~~i~vw~~~~~---~~~~~~~~------~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d- 187 (501)
.+++++ +.|..+..|.|.|+.+. .++.+++. . -...-..+..+| +| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-------------dG-i~Vs~~g~~ 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-------------DA-IYISALGNE 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-------------SC-EEEEEEEET
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-------------Ce-EEEEcCCCc
Confidence 666665 56777899999998653 13444442 1 112345566777 77 77776665
Q ss_pred -----CceEEec--CCceeeeccCCCCc---eEEEEeeecCCCCCCEEEEee-------------------CCCcEEEEe
Q 010784 188 -----HSIRLWW--KGSCQRCFKGHNGP---VSTLSDKLLGDGSGKILASGG-------------------EDATVRLWS 238 (501)
Q Consensus 188 -----g~i~vwd--~~~~~~~~~~h~~~---v~~l~~s~~~~~~~~~l~sg~-------------------~dg~i~iwd 238 (501)
|.|.+.| +.+.+.++.....+ -..+.|+ ++++.+++.. .+.+|.+||
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~----p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN----LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE----TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC----CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 7899999 57777777532222 2346666 7888888874 368999999
Q ss_pred ccCCCccccccceeeccCC--CCceeEEEE--eecCCeEEEEE-e-----CCCeEEEEECCCCccccceecccceecCCC
Q 010784 239 LSSSGKRGQQALKATLYGH--EKPIKLMSV--AGHKSFLLVTI-S-----KDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~--~~~v~~l~~--~~~~~~~l~s~-s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+.+++ .+.++..- ......+.| +| ++++++.+ - .+++|.+|....++. .
T Consensus 235 ~~~~k------~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~---------- 293 (462)
T 2ece_A 235 LRKRK------RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKW----N---------- 293 (462)
T ss_dssp TTTTE------EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEE----E----------
T ss_pred CCCCc------EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCce----e----------
Confidence 99864 35555432 123445656 77 45555444 4 677888887654321 1
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-------cCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCC
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-------ICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRS 376 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~ 376 (501)
.+.+.|+.+.+....+. +-......|.+++||++|.++..+. |.+||+...
T Consensus 294 -----------------~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 294 -----------------AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp -----------------EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred -----------------EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 11222222221111110 0024467899999999999888543 999998643
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.69 E-value=3.9e-06 Score=71.94 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=125.4
Q ss_pred eeeeccCCC--CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 198 CQRCFKGHN--GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 198 ~~~~~~~h~--~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.+.++. |. .....+.|+ ++.++++.+.+|.|+++|+.+++. +..+......-..+.+. ++.+.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~-----~~~Ly~stG~~g~v~~iD~~Tgkv------~~~~l~~~~FgeGit~~--g~~Ly~ 110 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH-----QGHFFESTGHQGTLRQLSLESAQP------VWMERLGNIFAEGLASD--GERLYQ 110 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE-----TTEEEEEETTTTEEEECCSSCSSC------SEEEECTTCCEEEEEEC--SSCEEE
T ss_pred EEEEEc-CCCccccceEEEE-----CCEEEEEcCCCCEEEEEECCCCcE------EeEECCCCcceeEEEEe--CCEEEE
Confidence 444553 33 334678885 467788888889999999999874 33331111111234543 556666
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEE
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILH 349 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~ 349 (501)
..-.++.+.+||..+.+.+..+. ..+..+.+..+...++++.++ .+.++|..+.+.+.++.... ..++
T Consensus 111 ltw~~~~v~V~D~~Tl~~~~ti~------~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 111 LTWTEGLLFTWSGMPPQRERTTR------YSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EESSSCEEEEEETTTTEEEEEEE------CSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEccCCEEEEEECCcCcEEEEEe------CCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 66678999999999987665543 334556777778888887754 89999999998887665422 2456
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--------cCcccCeEEEEecCC--eEEEEe
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--------DGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~--~~l~~g 409 (501)
.+.|. +|++++....+. |.+.|..+++....... ..+ ..-....+.|+++|+ +++++|
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl-~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA-SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC-HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC-CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 67776 777666665555 99999999875411000 000 111246789999997 888887
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=3.7e-06 Score=84.61 Aligned_cols=274 Identities=11% Similarity=0.055 Sum_probs=156.9
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCc----------e-EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP----------V-STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~----------v-~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
+..++.++.++.|.-+| +|+.+-.+...... + ..+.+ .+..++.++.|+.|..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL------WGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------EBTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence 45666667788888888 67666554322110 1 11222 245788888999999999999875
Q ss_pred cccccceeeccCC----CCceeE-EEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceec--------
Q 010784 245 RGQQALKATLYGH----EKPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSV-------- 305 (501)
Q Consensus 245 ~~~~~~~~~~~~~----~~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~-------- 305 (501)
+-.+... ...+.. ..+. ++. ++.+.. +|.|..+|.++++.+-..........
T Consensus 140 ------~W~~~~~~~~~~~~~~~~P~v~--~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 140 ------IWSQQTTDPAKPYSITGAPRVV--KGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp ------EEEEECSCTTSSCBCCSCCEEE--TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred ------eeeeccCCCCCcceecCCCEEE--CCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 2222211 011111 1111 444 444432 58999999999987655432110000
Q ss_pred -----------------CCC---ceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc--
Q 010784 306 -----------------PGV---PVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI-- 343 (501)
Q Consensus 306 -----------------~~~---~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~-- 343 (501)
.+. ...+....+.+++.+++ .|..+|.++++.+..++.
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~ 290 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP 290 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC
Confidence 000 11222234566666543 389999999999887764
Q ss_pred CC-------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCCCc-----ccc---------------cC--
Q 010784 344 CK-------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQPM-----AEL---------------DG-- 390 (501)
Q Consensus 344 ~~-------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~---------------~~-- 390 (501)
|. .+.....+..+|+ .++.++.++ ++++|..+++.+...... ..+ .+
T Consensus 291 ~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 370 (668)
T 1kv9_A 291 GDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP 370 (668)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC
T ss_pred CccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCe
Confidence 22 2222223333665 688888888 999999998754100000 000 00
Q ss_pred ------ccc--CeEEEEecCC-eEEEE------------------------------------ecCCCcEEEEeCCCccc
Q 010784 391 ------HVG--SVTQLHMDPY-KIVTG------------------------------------GRDDLRINIWETDTGML 425 (501)
Q Consensus 391 ------h~~--~v~~l~~~~~-~~l~~------------------------------------gs~dg~i~iwd~~~~~~ 425 (501)
..+ .-..++++|+ .++.. ...+|.|..||+.+++.
T Consensus 371 ~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~ 450 (668)
T 1kv9_A 371 IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA 450 (668)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence 000 0012567776 33221 12348899999999998
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+-+.... .......+...+.++++++ .+|.|+.||..+++.
T Consensus 451 ~W~~~~~------~~~~~~~~~t~gg~vf~g~--~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 451 AWKVPYP------THWNGGTLSTAGNLVFQGT--AAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEES------SSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred EEEccCC------CCCcCceeEeCCCEEEEEC--CcccchhhhhhcChh
Confidence 8776422 2233445666788888887 679999999877664
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.63 E-value=0.00031 Score=64.54 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=145.3
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
+...+|.+..++..++++-. ..|+..++... .....+.+ ...+..++|.+. ++.++++-...+.
T Consensus 33 ~d~~~C~~~~~~~~ll~~~~--~~I~~i~~~g~-~~~~~~~~-~~~~~~l~~d~~------------~~~ly~~D~~~~~ 96 (349)
T 3v64_C 33 PDRRSCKALGPEPVLLFANR--IDIRQVLPHRS-EYTLLLNN-LENAIALDFHHR------------RELVFWSDVTLDR 96 (349)
T ss_dssp TTSSCEEESSSCCEEEEECB--SCEEEECTTSC-CEEEEECS-CSCEEEEEEETT------------TTEEEEEETTTTE
T ss_pred CCCCcccccccCceeEeecc--cceEEEeCCCC-eeEEeecC-CCceEEEEEecc------------ccEEEEEeccCCc
Confidence 34467777777554444332 34666666542 33333333 344789999873 4566666667788
Q ss_pred eEEec-CCceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 190 IRLWW-KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 190 i~vwd-~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
|..++ .+.....+ .........+++. ...+.++++-...+.|.+.+++.... ...+...-.....+++.
T Consensus 97 I~r~~~~g~~~~~~~~~~~~~p~glavd---~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l~~P~~iavd 167 (349)
T 3v64_C 97 ILRANLNGSNVEEVVSTGLESPGGLAVD---WVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALH 167 (349)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTCSCEEEEEEE
T ss_pred eEEEecCCCCceEEEeCCCCCccEEEEe---cCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCCCCcceEEEe
Confidence 88888 44333332 2222344567764 12455556666678899999876432 22222333456889999
Q ss_pred ecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 268 GHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 268 ~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
|.++.++++-... +.|..+++...... ......-.
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~~~~--------------------------------------------~~~~~~~~ 203 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGSGRR--------------------------------------------IIADTHLF 203 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCE--------------------------------------------ESCCSSCS
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCCCcE--------------------------------------------EEEECCCC
Confidence 8667666666555 77888777643210 00011123
Q ss_pred cEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc
Q 010784 347 ILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~ 424 (501)
....++++|++..|..+. ..+ |..+|+...... ..+.........|++..+.++.+-...+.|..++..+|+
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~------~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK------AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE------EEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 467899998655554444 445 999998653211 112222345678888666777776788899999977787
Q ss_pred cccccc
Q 010784 425 LANSLL 430 (501)
Q Consensus 425 ~~~~~~ 430 (501)
.+..+.
T Consensus 278 ~~~~i~ 283 (349)
T 3v64_C 278 NQEIIR 283 (349)
T ss_dssp SCEEEE
T ss_pred ccEEec
Confidence 766663
No 256
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.62 E-value=0.00019 Score=66.91 Aligned_cols=244 Identities=9% Similarity=-0.030 Sum_probs=143.5
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
..+|.+..+...++++.. ..|+..++... .....+. .......++|.+. ++.++++-...+.|.
T Consensus 78 ~~~C~~~~~~~~l~~~~~--~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~------------~~~ly~~D~~~~~I~ 141 (386)
T 3v65_B 78 RRSCKALGPEPVLLFANR--IDIRQVLPHRS-EYTLLLN-NLENAIALDFHHR------------RELVFWSDVTLDRIL 141 (386)
T ss_dssp SSCEEECSSCCEEEEECB--SCEEEECTTSC-CCEEEEC-SCSCEEEEEEETT------------TTEEEEEETTTTEEE
T ss_pred CCeECCccccceeEeecC--ccceeeccCCC-cEEEEec-CCCccEEEEEecC------------CCeEEEEeCCCCcEE
Confidence 456777666554444332 45666676642 3333333 3345788999873 456666666778898
Q ss_pred Eec-CCceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 192 LWW-KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 192 vwd-~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
.++ .+.....+ .........+++. ...+.++++-...+.|.+.+++.... ...+...-.....|++.|.
T Consensus 142 r~~~~g~~~~~~~~~~~~~p~glavd---~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 142 RANLNGSNVEEVVSTGLESPGGLAVD---WVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp EEETTSCCEEEEECSSCSCCCCEEEE---TTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSCSCEEEEEEETT
T ss_pred EEecCCCCcEEEEeCCCCCccEEEEE---eCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCCCCCcEEEEEcC
Confidence 888 44433332 2222334566664 12455556656677888888875432 2222333345688899886
Q ss_pred CCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 270 KSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 270 ~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
++.++++-... +.|..+++...... ......-...
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~~~~--------------------------------------------~~~~~~~~~P 248 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGSGRR--------------------------------------------IIADTHLFWP 248 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCE--------------------------------------------EEECSSCSCE
T ss_pred CCeEEEeccCCCCEEEEEeCCCCCcE--------------------------------------------EEEECCCCCe
Confidence 66666665555 67777776543110 0011112346
Q ss_pred EEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccc
Q 010784 349 HSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLA 426 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~ 426 (501)
..++++|++..|+.+ +... |..+|+...... ..+.........|++..+.++.+-...+.|..++..+|+.+
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~------~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK------AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE------EEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE------EEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence 789999865554444 4445 999998643211 12222234567888866677777778889999997788777
Q ss_pred cccc
Q 010784 427 NSLL 430 (501)
Q Consensus 427 ~~~~ 430 (501)
..+.
T Consensus 323 ~~i~ 326 (386)
T 3v65_B 323 EIIR 326 (386)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7764
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.61 E-value=3.5e-06 Score=84.82 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=157.6
Q ss_pred cCCeeeEEEEecccccccceecccCCcce-----------eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--
Q 010784 128 GSSIQNIKIDNFLSESYYRATLSDHKARI-----------TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-- 194 (501)
Q Consensus 128 g~~d~~i~vw~~~~~~~~~~~~~~h~~~V-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-- 194 (501)
++.++.+.-+|..+| +.+..+....... ..+.+ .+..++.++.|+.|..+|
T Consensus 72 ~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~dg~l~alD~~ 135 (668)
T 1kv9_A 72 SMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL---------------WGDKVYVGTLDGRLIALDAK 135 (668)
T ss_dssp EEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE---------------EBTEEEEECTTSEEEEEETT
T ss_pred ECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE---------------ECCEEEEEcCCCEEEEEECC
Confidence 344678888998886 5554443322110 11122 356788888899999999
Q ss_pred CCceeeeccCCC----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCCccccccceeeccC-------
Q 010784 195 KGSCQRCFKGHN----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSGKRGQQALKATLYG------- 256 (501)
Q Consensus 195 ~~~~~~~~~~h~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~------- 256 (501)
+|+.+-.+.... ..+.+ ... .++ .++.+.. +|.|..+|..+++. +-.+..
T Consensus 136 tG~~~W~~~~~~~~~~~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~p~~ 203 (668)
T 1kv9_A 136 TGKAIWSQQTTDPAKPYSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL------AWRFYTVPGDPAL 203 (668)
T ss_dssp TCCEEEEEECSCTTSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCTTS
T ss_pred CCCEeeeeccCCCCCcceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE------EEEecccCCCCCc
Confidence 787775554321 11111 111 133 4555543 58999999998875 222210
Q ss_pred ------------------------CCCceeEEEEeecCCeEEEEEeCCC-------------------eEEEEECCCCcc
Q 010784 257 ------------------------HEKPIKLMSVAGHKSFLLVTISKDS-------------------KVRVWDTSTSSA 293 (501)
Q Consensus 257 ------------------------~~~~v~~l~~~~~~~~~l~s~s~dg-------------------~v~vwd~~~~~~ 293 (501)
+......+++.+ ...+++.++.++ .|..+|.++++.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~ 282 (668)
T 1kv9_A 204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL 282 (668)
T ss_dssp CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred cccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence 011112356766 445777777666 399999999987
Q ss_pred ccceeccccee----cCCCce--eeecCCCe--EEEEe--CCcEEEEEcCCCceEeeeccCC------------CcE---
Q 010784 294 VRSSCCVGMTS----VPGVPV--DMKCHESM--LYIAS--GSSVVTIDLRTMQKVMTPAICK------------PIL--- 348 (501)
Q Consensus 294 ~~~~~~~~~~~----~~~~~~--~~~~~~~~--~~~~~--~~~i~~~d~~~~~~~~~~~~~~------------~~v--- 348 (501)
+-......... ....+. .+..+... .++.. .+.++++|.++++.+....... .++
T Consensus 283 ~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~ 362 (668)
T 1kv9_A 283 AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAP 362 (668)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECT
T ss_pred eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccc
Confidence 65544321110 001111 11222221 12222 3489999999998874332111 000
Q ss_pred ---------------------EEEEEcCCCcEEEEE------------------------------------cCCc-EEE
Q 010784 349 ---------------------HSFSIMPSKSLICTG------------------------------------GIGK-AMT 370 (501)
Q Consensus 349 ---------------------~~v~~~~~~~~l~~~------------------------------------~~d~-i~i 370 (501)
..++++|+..+++.. ..++ |..
T Consensus 363 ~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A 442 (668)
T 1kv9_A 363 GVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLA 442 (668)
T ss_dssp TTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEE
T ss_pred cccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEE
Confidence 125677775555431 1225 899
Q ss_pred EecCCCCCCCCCCCcccccCcccCeE--EEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 371 WDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 371 wd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
||+.+++.. -....+ .... .+... ..+++.++.||.++.||..+|+.+..+.... ...-.-+.+..
T Consensus 443 ~D~~tG~~~------W~~~~~-~~~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~----~~~~~p~~~~~ 510 (668)
T 1kv9_A 443 WDPVKQKAA------WKVPYP-THWNGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQS----GIVAAPMTFEL 510 (668)
T ss_dssp EETTTTEEE------EEEEES-SSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEEEEE
T ss_pred EeCCCCcEE------EEccCC-CCCcCceeEeC-CCEEEEECCcccchhhhhhcChhheEecCCC----CcccCceEEEE
Confidence 999987654 232221 1222 22222 3455556799999999999999998885432 11112344566
Q ss_pred ccc-EEEEee
Q 010784 449 SGC-RIVTAS 457 (501)
Q Consensus 449 ~g~-~l~s~~ 457 (501)
+|+ +++.++
T Consensus 511 ~G~~yva~~~ 520 (668)
T 1kv9_A 511 AGRQYVAIMA 520 (668)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 777 444443
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=2e-05 Score=67.03 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=120.6
Q ss_pred CceEEEEeeecCCCCCCEEEEeeCC--CcEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCeEEEEEeCCCeE
Q 010784 207 GPVSTLSDKLLGDGSGKILASGGED--ATVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSFLLVTISKDSKV 283 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~s~dg~v 283 (501)
.-...+.|+ ++.++.+.+.+ +.|+.+|+.+++. +......... -..+.+. ++.+.+..-.++.+
T Consensus 21 ~ftqGL~~~-----~~~LyestG~~g~S~v~~vD~~tgkv------~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 21 AFTEGLFYL-----RGHLYESTGETGRSSVRKVDLETGRI------LQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG 87 (243)
T ss_dssp CCEEEEEEE-----TTEEEEEECCTTSCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred cccccEEEE-----CCEEEEECCCCCCceEEEEECCCCCE------EEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence 345688885 36666676665 4899999999874 4444322221 1234443 56666666778999
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEEEEEEcCCC
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILHSFSIMPSK 357 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~~v~~~~~~ 357 (501)
.+||..+.+.+..+. ..+..+.+..+...++++.++ .+.++|..+.+.+.++.... ..++.+.+. +|
T Consensus 88 ~v~D~~tl~~~~ti~------~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 88 FVYDLATLTPRARFR------YPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp EEEETTTTEEEEEEE------CSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEECCcCcEEEEEe------CCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 999999987655443 344567777777778887764 89999999998887766422 345666665 67
Q ss_pred cEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--------cCcccCeEEEEecCC--eEEEEe
Q 010784 358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--------DGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~--~~l~~g 409 (501)
++++...... |.+.|..+++...... +..+ .......+.|+++|+ +++++|
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~id-l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWID-LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEE-CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEE-CCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 7666665455 9999999987541100 0001 112246789999997 888887
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.59 E-value=3.4e-05 Score=75.93 Aligned_cols=256 Identities=8% Similarity=-0.060 Sum_probs=139.4
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCC----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCC
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHN----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSG 243 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~ 243 (501)
.+..++.++.|+.+..+| +++.+-.+.... ..+.+ ... .++ .++.++. +|.|..+|..+++
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-----ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-----ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 356778888899999999 677665443211 01211 111 133 4555554 7899999999887
Q ss_pred ccccccceeeccCCC-------------------------------------Cce-eEEEEeecCCeEEEEEeCC-----
Q 010784 244 KRGQQALKATLYGHE-------------------------------------KPI-KLMSVAGHKSFLLVTISKD----- 280 (501)
Q Consensus 244 ~~~~~~~~~~~~~~~-------------------------------------~~v-~~l~~~~~~~~~l~s~s~d----- 280 (501)
. +-.+.... ..+ ..+++.+..+ .++.++.+
T Consensus 188 ~------~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 188 L------KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWN 260 (571)
T ss_dssp E------EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSC
T ss_pred E------EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCcccc
Confidence 5 21111100 000 1245555333 45444432
Q ss_pred -----------CeEEEEECCCCccccceecccce----ecCCCceeeec--CCC--e-EEEEe-CCcEEEEEcCCCceEe
Q 010784 281 -----------SKVRVWDTSTSSAVRSSCCVGMT----SVPGVPVDMKC--HES--M-LYIAS-GSSVVTIDLRTMQKVM 339 (501)
Q Consensus 281 -----------g~v~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~--~-~~~~~-~~~i~~~d~~~~~~~~ 339 (501)
+.|..+|.++++.+-........ .....+.-... +.. . ++... .+.+.++|..+++.+.
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 36999999999876554432211 01112222221 221 1 22233 3489999999998876
Q ss_pred eeccCC-------------CcE--------------------------EEEEEcCCCcEEEEEc----------------
Q 010784 340 TPAICK-------------PIL--------------------------HSFSIMPSKSLICTGG---------------- 364 (501)
Q Consensus 340 ~~~~~~-------------~~v--------------------------~~v~~~~~~~~l~~~~---------------- 364 (501)
...... .++ ..++++|+..++++..
T Consensus 341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 420 (571)
T 2ad6_A 341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA 420 (571)
T ss_dssp EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence 554221 111 2356778766666543
Q ss_pred ---------------------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe-cCC-eEEEEecCCCcEEEEeC
Q 010784 365 ---------------------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM-DPY-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 365 ---------------------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~-~~l~~gs~dg~i~iwd~ 420 (501)
.++ |..||..+++.. .++.. ...+....+ ..+ .+++ ++.||.|+.+|.
T Consensus 421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~------W~~~~-~~~~~~~~~~t~gg~v~~-g~~dg~l~a~D~ 492 (571)
T 2ad6_A 421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK------WTKWE-KFAAWGGTLYTKGGLVWY-ATLDGYLKALDN 492 (571)
T ss_dssp TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE------EEEEE-SSCCCSBCEEETTTEEEE-ECTTSEEEEEET
T ss_pred CCccccccceeccCccccCCCCCCeEEEEECCCCCEE------EEecC-CCCccceeEEECCCEEEE-EcCCCeEEEEEC
Confidence 235 888998887654 33221 112222111 123 4444 679999999999
Q ss_pred CCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
.+|+.+.++..... ..-.-+.+..+|+.++...
T Consensus 493 ~tG~~lw~~~~~~~----~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 493 KDGKELWNFKMPSG----GIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTCCEEEEEECSSC----CCSCCEEEEETTEEEEEEE
T ss_pred CCCCEEEEEeCCCC----cEeeeEEEEECCEEEEEEE
Confidence 99999988864321 1112244667887655543
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.55 E-value=4.2e-05 Score=75.29 Aligned_cols=78 Identities=12% Similarity=-0.059 Sum_probs=44.8
Q ss_pred EEEEecCCCCCCCCCCCcccccCcccCeE-E-EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeE
Q 010784 368 AMTWDIRRSQDAVKPQPMAELDGHVGSVT-Q-LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSA 445 (501)
Q Consensus 368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~-l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 445 (501)
|..||+.+++.+ -+... ..+.. . +......++ .++.||.++.||.++|+.+-++.... .....-+.
T Consensus 455 l~A~D~~tG~~~------W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~lW~~~l~~----g~~~~P~~ 522 (599)
T 1w6s_A 455 IKAYNAITGDYK------WEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDLLWKFKIPS----GAIGYPMT 522 (599)
T ss_dssp EEEECTTTCCEE------EEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEE
T ss_pred EEEEECCCCCEE------eEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCCCEEEEeeCCC----CcEeccEE
Confidence 888888877643 22211 11111 1 222223444 46799999999999999998885432 11223355
Q ss_pred eeccccE-EEEee
Q 010784 446 MAVSGCR-IVTAS 457 (501)
Q Consensus 446 ~s~~g~~-l~s~~ 457 (501)
+..+|+. +++.+
T Consensus 523 y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 523 YTHKGTQYVAIYY 535 (599)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEeCCEEEEEEEc
Confidence 6778874 44433
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=3e-05 Score=70.57 Aligned_cols=120 Identities=7% Similarity=0.002 Sum_probs=67.8
Q ss_pred EEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC----------CCc
Q 010784 348 LHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD----------DLR 414 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~----------dg~ 414 (501)
...++++|+++.|+.+ +..+ |..|++.....- ....+....+ ...++++++ .++++... .+.
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 4578999999865555 4444 999998753210 0111111122 678899998 77666533 467
Q ss_pred EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784 415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
|..+|. .++.+..+..... .....++.+++ .++++.++.. ..+.|..+++....+..+
T Consensus 262 v~~~d~-~G~~~~~~~~~~g-~~~~~~~~~~~-~~g~L~v~~~--~~~~i~~~~~~~~~~~~~ 319 (322)
T 2fp8_A 262 GIKFDE-FGNILEVIPLPPP-FAGEHFEQIQE-HDGLLYIGTL--FHGSVGILVYDKKGNSFV 319 (322)
T ss_dssp EEEECT-TSCEEEEEECCTT-TTTSCCCEEEE-ETTEEEEECS--SCSEEEEEEC--------
T ss_pred EEEECC-CCCEEEEEECCCC-CccccceEEEE-eCCEEEEeec--CCCceEEEecccccCccc
Confidence 888886 4777766642211 01234566666 4666555554 568899999876665544
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=0.00016 Score=65.24 Aligned_cols=234 Identities=12% Similarity=0.025 Sum_probs=130.1
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
.....++|.+ +++++++...++.|..|| .+.....+. .......+++. ++++++++.....
T Consensus 32 ~~pegia~~~-------------~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~----~dG~l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLASAP-------------DGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFT----SNGDLVATGWNAD 93 (306)
T ss_dssp CCEEEEEECT-------------TSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEEC----TTSCEEEEEECTT
T ss_pred CCcceEEECC-------------CCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEc----CCCcEEEEeccCC
Confidence 4567888988 788888777889999999 554433332 23567888885 7888666554332
Q ss_pred --cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 233 --TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 233 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
.|..+|..++.. ..+.... .......++..+ ++..+++-..++.|.++|..+++....... ..
T Consensus 94 ~~~v~~~d~~~g~~----~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~-------- 158 (306)
T 2p4o_A 94 SIPVVSLVKSDGTV----ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEH-PM-------- 158 (306)
T ss_dssp SCEEEEEECTTSCE----EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEEC-GG--------
T ss_pred cceEEEEcCCCCeE----EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cc--------
Confidence 366666665542 1111111 122234444443 444555555678888888765321000000 00
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCC-CCCCCCCCCccc
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRR-SQDAVKPQPMAE 387 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~-~~~~~~~~~~~~ 387 (501)
... ......-...+.+ ++++..|+.+. ..+ |..+++.. ++.. ....
T Consensus 159 ------------------------~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~ 207 (306)
T 2p4o_A 159 ------------------------LAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEI 207 (306)
T ss_dssp ------------------------GSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC----CCEE
T ss_pred ------------------------ccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEE
Confidence 000 0000011223445 67776555544 445 99999875 2210 0111
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc--ccccCCCCCCCcceeeeEee---ccccEEEEeec
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN--SLLCNYPEEADISTGCSAMA---VSGCRIVTASY 458 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s---~~g~~l~s~~~ 458 (501)
+.. ......++++++ +++++....+.|.+++.. ++... .+. ......++++|. |+++.|+.++.
T Consensus 208 ~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-----~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 208 FVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-----QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-----GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred Eec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-----cccCCceEEEEecccCCCCEEEEECC
Confidence 111 134567889998 888877678899999975 65422 332 113457889998 89877776653
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=4.9e-05 Score=69.20 Aligned_cols=235 Identities=7% Similarity=-0.041 Sum_probs=133.0
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc--------------------CCcceeEEEeeccCcCccc
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD--------------------HKARITCMRLFPLHETSLF 170 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--------------------h~~~V~~~~~~~~~~~~~~ 170 (501)
.....+++++++.++.++..++.|..|+..++ .. ..+.. ....+..+++.+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~------ 90 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ------ 90 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT-CE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT------
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC-ce-EEEecccccccccccccccchhccccCCCCceEEEcCC------
Confidence 34788999999986667777888888887653 22 11110 1134778888851
Q ss_pred ccCCCCcCcEEEEeeCCCceEEec-CCceeeeccC-----CCCceEEEEeeecCCC-CCCEEEEeeC-------------
Q 010784 171 RSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKG-----HNGPVSTLSDKLLGDG-SGKILASGGE------------- 230 (501)
Q Consensus 171 ~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~-----h~~~v~~l~~s~~~~~-~~~~l~sg~~------------- 230 (501)
+++ |+.+...+.|..+| .+..+..+.. .......+++. + +|++.++-..
T Consensus 91 ------~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d----~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 91 ------NNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD----QRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp ------TTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC----TTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred ------CCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe----cCCCEEEEECCcccccccccceehc
Confidence 344 44444445588888 3333333321 11245677774 7 7776665432
Q ss_pred ----CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784 231 ----DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV 305 (501)
Q Consensus 231 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 305 (501)
++.|..+|..++.. ..+...-.....|++++ +++ ++++-+..+.|.++++..... ...
T Consensus 160 ~~~~~g~v~~~d~~~~~~-------~~~~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~-~~~-------- 222 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKET-------TLLLKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKK-GTA-------- 222 (322)
T ss_dssp HTCCCEEEEEEETTTTEE-------EEEEEEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTT-TCE--------
T ss_pred ccCCCceEEEEeCCCCEE-------EEeccCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcC-Ccc--------
Confidence 36677787765431 11111112345688887 555 445556678899998875321 000
Q ss_pred CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecC
Q 010784 306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIR 374 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~ 374 (501)
+.... ..+ ...+++.++|+++++... .+ |..+|..
T Consensus 223 ------------------------------~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 223 ------------------------------EVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp ------------------------------EEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred ------------------------------ceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 00001 112 567888888887766544 34 7777754
Q ss_pred CCCCCCCCCCcccccCc----ccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784 375 RSQDAVKPQPMAELDGH----VGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~ 422 (501)
++.. ..+... ...++.+++...+++++....+.|.++++..
T Consensus 269 -G~~~------~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 269 -GNIL------EVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -SCEE------EEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred -CCEE------EEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 3321 333221 2346666665447777776788899998753
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.47 E-value=7.7e-05 Score=73.52 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=47.4
Q ss_pred Cc-EEEEecCCCCCCCCCCCcccccCcccCeE--EEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
.+ |..||+.+++.+ -+.... .++. .+.. ...++..|+.||.++.||.++|+.+-++.... .....
T Consensus 465 ~G~l~A~D~~tG~~~------W~~~~~-~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~----g~~a~ 532 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV------WEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----GIVSP 532 (582)
T ss_dssp SEEEEEECTTTCCEE------EEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSC
T ss_pred cceEEEEECCCCCEE------EEecCC-CCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCC----CcccC
Confidence 35 888999887654 222211 1111 1222 23344457799999999999999998885422 11122
Q ss_pred eeEeecccc-EEEEee
Q 010784 443 CSAMAVSGC-RIVTAS 457 (501)
Q Consensus 443 ~~~~s~~g~-~l~s~~ 457 (501)
-+.+..+|+ |+++.+
T Consensus 533 P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 533 PITWEQDGEQYLGVTV 548 (582)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEc
Confidence 356778887 444443
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.44 E-value=0.0001 Score=72.58 Aligned_cols=235 Identities=13% Similarity=0.069 Sum_probs=133.2
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCC--CceeE-EEEeecCCeEEEEEeC------CCeEEEEECCC
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHE--KPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTST 290 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~--~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~ 290 (501)
+..++.++.|+.|..+|..+++. +-... .+. ..+.+ ..+. ++ .++.++. ++.|..+|.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~t 185 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------NWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKT 185 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------EEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCC
Confidence 45778888899999999999874 22221 110 01111 1122 44 4445544 78999999999
Q ss_pred Cccccceecccce-e------------------------------c-CC---CceeeecCCCeEEEEeCC----------
Q 010784 291 SSAVRSSCCVGMT-S------------------------------V-PG---VPVDMKCHESMLYIASGS---------- 325 (501)
Q Consensus 291 ~~~~~~~~~~~~~-~------------------------------~-~~---~~~~~~~~~~~~~~~~~~---------- 325 (501)
++.+-........ . . .+ ....+......+++.++.
T Consensus 186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~ 265 (571)
T 2ad6_A 186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRP 265 (571)
T ss_dssp CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccC
Confidence 9876543322110 0 0 00 011222334566666642
Q ss_pred -------cEEEEEcCCCceEeeeccC--C--------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784 326 -------SVVTIDLRTMQKVMTPAIC--K--------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 326 -------~i~~~d~~~~~~~~~~~~~--~--------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 384 (501)
.+..+|.++++.+..++.. . .++. +....+|+ .++.++.++ ++++|..+++.+-....
T Consensus 266 gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 4899999999998776532 1 2221 22224674 577788777 99999998875411000
Q ss_pred cccc------c-CcccCe--------------------------EEEEecCC-eEEEEe---------------------
Q 010784 385 MAEL------D-GHVGSV--------------------------TQLHMDPY-KIVTGG--------------------- 409 (501)
Q Consensus 385 ~~~~------~-~h~~~v--------------------------~~l~~~~~-~~l~~g--------------------- 409 (501)
.... . ....++ ..++++|+ .++...
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 0000 0 000000 23567776 333322
Q ss_pred ----------------cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 410 ----------------RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 410 ----------------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..+|.|..||..+++.+-++... ..+....+...+..++.++ .+|.|+.+|..+++
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------~~~~~~~~~t~gg~v~~g~--~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------FAAWGGTLYTKGGLVWYAT--LDGYLKALDNKDGK 496 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES------SCCCSBCEEETTTEEEEEC--TTSEEEEEETTTCC
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC------CCccceeEEECCCEEEEEc--CCCeEEEEECCCCC
Confidence 13588999999999988777422 1223333444566777777 66999999987766
Q ss_pred c
Q 010784 474 C 474 (501)
Q Consensus 474 ~ 474 (501)
.
T Consensus 497 ~ 497 (571)
T 2ad6_A 497 E 497 (571)
T ss_dssp E
T ss_pred E
Confidence 4
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.38 E-value=0.00017 Score=70.99 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=86.6
Q ss_pred EEEeeCCCcEEEEeccCCCccccccceeeccCCC----CceeE-EEEeecCCeEEEEEe------CCCeEEEEECCCCcc
Q 010784 225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHE----KPIKL-MSVAGHKSFLLVTIS------KDSKVRVWDTSTSSA 293 (501)
Q Consensus 225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~-l~~~~~~~~~l~s~s------~dg~v~vwd~~~~~~ 293 (501)
|+.++.|+.|..+|..+++. +-...... ..+.+ -.+. ++. ++.++ .+|.|+.+|.++++.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~------~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~ 194 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGET------VWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQ 194 (599)
T ss_dssp EEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred EEEEcCCCEEEEEECCCCCE------EEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcE
Confidence 78888899999999999875 22221111 01111 1122 444 44444 379999999999987
Q ss_pred ccceeccccee-------------------------------c-CC---CceeeecCCCeEEEEeCC-------------
Q 010784 294 VRSSCCVGMTS-------------------------------V-PG---VPVDMKCHESMLYIASGS------------- 325 (501)
Q Consensus 294 ~~~~~~~~~~~-------------------------------~-~~---~~~~~~~~~~~~~~~~~~------------- 325 (501)
+-......... . .+ ....+....+.+++.+++
T Consensus 195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~ 274 (599)
T 1w6s_A 195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN 274 (599)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence 65433221110 0 00 011233345566776653
Q ss_pred ----cEEEEEcCCCceEeeeccCCC----------cEEEEEEc-CCC---cEEEEEcCCc-EEEEecCCCCCC
Q 010784 326 ----SVVTIDLRTMQKVMTPAICKP----------ILHSFSIM-PSK---SLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 326 ----~i~~~d~~~~~~~~~~~~~~~----------~v~~v~~~-~~~---~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
.+..+|.++++.+..++.... ++. +... .+| ..++.++.++ ++++|..+++.+
T Consensus 275 ~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 689999999999877764321 122 2222 467 5677788778 999999988754
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.0014 Score=60.08 Aligned_cols=219 Identities=11% Similarity=-0.068 Sum_probs=127.0
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
..|+..+ .+.....+.........++|. ..++.++++-...+.|..++++.... .............+++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d---~~~~~ly~~D~~~~~I~r~~~~g~~~------~~~~~~~~~~p~glav 123 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFH---HRRELVFWSDVTLDRILRANLNGSNV------EEVVSTGLESPGGLAV 123 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSCCCEEEE
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEe---ccccEEEEEeccCCceEEEecCCCCc------eEEEeCCCCCccEEEE
Confidence 4577777 443333333334457889986 13444555555678899999886542 2222222234567888
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
.+.++.++++-...+.|.+.++...... ......-.
T Consensus 124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~--------------------------------------------~l~~~~l~ 159 (349)
T 3v64_C 124 DWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------------------------------VLLWQSLE 159 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCE--------------------------------------------EEECTTCS
T ss_pred ecCCCeEEEEcCCCCeEEEEcCCCCceE--------------------------------------------EEEeCCCC
Confidence 8656777777777788888887653210 00111224
Q ss_pred cEEEEEEcCC-CcEEEEEcCC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784 347 ILHSFSIMPS-KSLICTGGIG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 347 ~v~~v~~~~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~ 421 (501)
....++++|. +.++++-... . |..+++...... ......-...+.|+++|+ +++.+-+..+.|..+++.
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 4678999985 4455554444 4 888887643221 111222345789999975 777777778899999986
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
. .....+.. .......++++ ..+...++-. ..+.|...+-.++.
T Consensus 234 G-~~~~~~~~----~~~~~P~giav-~~~~ly~td~--~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 234 G-SHRKAVIS----QGLPHPFAITV-FEDSLYWTDW--HTKSINSANKFTGK 277 (349)
T ss_dssp S-CSCEEEEC----SSCSSEEEEEE-ETTEEEEEET--TTTEEEEEETTTCC
T ss_pred C-CceEEEEe----CCCCCceEEEE-ECCEEEEecC--CCCeEEEEEccCCC
Confidence 4 33333311 11234566777 3444444443 56788888744443
No 268
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.33 E-value=0.0033 Score=62.38 Aligned_cols=323 Identities=9% Similarity=-0.020 Sum_probs=175.7
Q ss_pred CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+..|++++ ++.++.+-...+.|..+++.........+..--.....+++.+. .++++++-...+.|
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~------------~~~ly~~d~~~~~I 108 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL------------GEKLYWTDSETNRI 108 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT------------TTEEEEEETTTTEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec------------CCEEEEEeCCCCEE
Confidence 366788886 45555555556778888876431122233333356788888873 35566666677899
Q ss_pred EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.+.+ .+.....+. ..-.....|++. +.+..|+.... .+.|...+++.... .......-.....|++
T Consensus 109 ~v~~~dG~~~~~l~~~~l~~P~~Iavd----p~~g~ly~tD~g~~~~I~r~~~dG~~~------~~l~~~~~~~P~Glal 178 (619)
T 3s94_A 109 EVSNLDGSLRKVLFWQELDQPRAIALD----PSSGFMYWTDWGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTL 178 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCCCCEEEE----TTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCCCceEEEe----cCCCeEEEeccCCCCEEEEEECCCCce------EEEEeCCCCCCcEEEE
Confidence 9998 555444433 333445678875 55445544443 45676667665432 1222223345678999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~ 344 (501)
.+.++.++++-+..+.|...|+......... ......+..+...++.++.+.- +.|...|..+++....+...
T Consensus 179 d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp ETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSC
T ss_pred EccCCEEEEEeCCCCeEEEecCCCCccEEEE-----eCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecC
Confidence 9866777777677788999998754321110 0123345677777777777653 37888887665432222110
Q ss_pred CCc-------------------------EEEEEE-----------cC-------C--------CcEEEEEcCCcEEEEec
Q 010784 345 KPI-------------------------LHSFSI-----------MP-------S--------KSLICTGGIGKAMTWDI 373 (501)
Q Consensus 345 ~~~-------------------------v~~v~~-----------~~-------~--------~~~l~~~~~d~i~iwd~ 373 (501)
... ...+++ .| | ..+|+.+....|+..++
T Consensus 254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l 333 (619)
T 3s94_A 254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333 (619)
T ss_dssp CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEES
T ss_pred CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEec
Confidence 000 000111 11 1 11333333333666666
Q ss_pred CCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc
Q 010784 374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 451 (501)
...... .....+.+ -..+.++++++. .++.+-...+.|+.++.........+. .......++++...++
T Consensus 334 ~~~~~~---~~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-----~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 334 DTPDFT---DIVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-----AQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SSTTCC---CEECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----SSCSCCCEEEEETTTT
T ss_pred CCCccc---eeEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-----CCCCCcCceEEecccC
Confidence 554321 00011111 234678999984 777776678899999986533322221 1124566889987655
Q ss_pred EEEEeecCCCceEEEeeccC
Q 010784 452 RIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 452 ~l~s~~~d~~g~i~~w~~~~ 471 (501)
.|+.+.. ..+.|.+.++..
T Consensus 405 ~lY~tD~-~~~~I~v~~~~G 423 (619)
T 3s94_A 405 NLYWTDT-GTDRIEVTRLNG 423 (619)
T ss_dssp EEEEEET-TTTEEEEEETTS
T ss_pred cEEEEeC-CCCcEEEEeCCC
Confidence 5555443 567787777553
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.0013 Score=61.31 Aligned_cols=220 Identities=10% Similarity=-0.064 Sum_probs=126.7
Q ss_pred CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
...|+..+ .+.....+.........++|. ..++.++++-...+.|..++++.... ...+.........++
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d---~~~~~ly~~D~~~~~I~r~~~~g~~~------~~~~~~~~~~p~gla 165 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFH---HRRELVFWSDVTLDRILRANLNGSNV------EEVVSTGLESPGGLA 165 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCCE------EEEECSSCSCCCCEE
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEe---cCCCeEEEEeCCCCcEEEEecCCCCc------EEEEeCCCCCccEEE
Confidence 35677777 443333333334557889986 13444555555678899999886542 222222223345678
Q ss_pred EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784 266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK 345 (501)
Q Consensus 266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 345 (501)
+.+..+.++++-...+.|.+.++...... ..+...-
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~--------------------------------------------~l~~~~l 201 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------------------------------VLLWQSL 201 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCE--------------------------------------------EEECSSC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceE--------------------------------------------EeecCCC
Confidence 87656777777777778888777543210 0011122
Q ss_pred CcEEEEEEcCCCc-EEEEEcCC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeC
Q 010784 346 PILHSFSIMPSKS-LICTGGIG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWET 420 (501)
Q Consensus 346 ~~v~~v~~~~~~~-~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~ 420 (501)
.....++++|.+. ++++-... . |..+++...... ......-...+.|+++|+ +++++-+..+.|..+++
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 4567899998654 44444444 4 888887643221 111222345789999976 77777778889999998
Q ss_pred CCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
... ....+.. .......++++ ..+..+++-. ..+.|..++...+.
T Consensus 276 dG~-~~~~~~~----~~~~~P~giav-~~~~ly~td~--~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 276 DGS-HRKAVIS----QGLPHPFAITV-FEDSLYWTDW--HTKSINSANKFTGK 320 (386)
T ss_dssp TSC-SCEEEEC----SSCSSEEEEEE-ETTEEEEEET--TTTEEEEEETTTCC
T ss_pred CCC-eeEEEEE----CCCCCceEEEE-ECCEEEEeeC--CCCeEEEEECCCCc
Confidence 643 3333311 11234566777 3444444444 56888888844443
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0024 Score=59.71 Aligned_cols=227 Identities=10% Similarity=-0.034 Sum_probs=134.0
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC-----ceeeeccCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG-----SCQRCFKGH 205 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~-----~~~~~~~~h 205 (501)
..|+..++... .... +......+..|+|.+. ++.++++-...+.|+.++ .+ .....+...
T Consensus 92 ~~I~~i~l~~~-~~~~-~~~~~~~~~~l~~d~~------------~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 92 HEVRKMTLDRS-EYTS-LIPNLRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp TEEEEECTTSC-SCEE-EECSCSCEEEEEEETT------------TTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred ceeEEEccCCc-ceeE-eccccCcceEEeeeec------------cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 56666677642 2222 2334456889999873 455666656678888887 33 122222323
Q ss_pred CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CCeE
Q 010784 206 NGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DSKV 283 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg~v 283 (501)
......+++. . .+++.++-...+.|.+.+++.... ...+...-.....|++.|..+.++++-.. .+.|
T Consensus 158 ~~~p~glavD----~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 158 IQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp CSCEEEEEEE----TTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred CCCcccEEEE----ecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence 4456677774 4 455666666678899998876542 22222233446789998856655555433 3667
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
...++...... ......-.....|++++++..|+.+
T Consensus 228 ~~~~~dG~~~~--------------------------------------------~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 228 KKGGLNGVDIY--------------------------------------------SLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp EEEETTSCSCE--------------------------------------------EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCccE--------------------------------------------EEEECCCCceEEEEEEeCCCEEEEE
Confidence 77776543210 0011122456889999876655555
Q ss_pred c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 364 G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 364 ~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
. ... |..+|+...... .+......-.....|++..+.++.+-...+.|..+|..+|+.+..+.
T Consensus 264 D~~~~~I~~~d~dG~~~~----~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp ETTTTEEEEEETTSCCCE----EEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred ECCCCEEEEEeCCCCccE----EEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 444 999998653321 11111112334567888666777776788899999988888777763
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=0.00011 Score=73.87 Aligned_cols=268 Identities=13% Similarity=0.047 Sum_probs=134.5
Q ss_pred CceEEeeC-CcEEEeecCCe-----------eeEEEEecccccc-cceecc-cCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 113 HDHILLDN-NDIFSTQGSSI-----------QNIKIDNFLSESY-YRATLS-DHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 113 i~~~~~~~-~~~~~~~g~~d-----------~~i~vw~~~~~~~-~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
..+.++.+ ++++++.|+.+ ..+.+||..++.- .+..+. .+.....++++.. ++
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-------------~g 254 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-------------NG 254 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-------------TS
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-------------CC
Confidence 34666676 88888887543 2688899887421 111121 1222333456666 78
Q ss_pred cEEEEeeC-CCceEEec--CCceee--eccCCCCceEEEEeeecCCCCCCEEEEee-CC-----CcEEEEeccCCCcccc
Q 010784 179 NVLVTSSC-DHSIRLWW--KGSCQR--CFKGHNGPVSTLSDKLLGDGSGKILASGG-ED-----ATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 179 ~~l~s~~~-dg~i~vwd--~~~~~~--~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~ 247 (501)
.+++.|+. ++.+.+|| +.+-.. .+...... .+++.. +++++++.|+ .+ ..+.+||..++.-
T Consensus 255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~----~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W--- 326 (656)
T 1k3i_A 255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATM----SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW--- 326 (656)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEEC----TTSCEEEECCCCCSSSCCCCEEEEETTTTEE---
T ss_pred CEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEe----cCCeEEEEeCcccCCcccccceEeCCCCCcc---
Confidence 99999984 45799998 332221 12211112 223332 5888999988 34 4689999987542
Q ss_pred ccce-----eecc-CCCCceeEEEEeecCCeEEEEEeCC---------CeEEEEECCCCccccceecccc------eecC
Q 010784 248 QALK-----ATLY-GHEKPIKLMSVAGHKSFLLVTISKD---------SKVRVWDTSTSSAVRSSCCVGM------TSVP 306 (501)
Q Consensus 248 ~~~~-----~~~~-~~~~~v~~l~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~------~~~~ 306 (501)
..+ ..+. ..... .+. .++..++.|+.+ ..+..||..+............ ....
T Consensus 327 -~~~~~~~~~p~~~~~~~~----~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 327 -TSLPNAKVNPMLTADKQG----LYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp -EEETTSCSGGGCCCCTTG----GGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred -eeCCCccccccccccccc----eee-cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 111 0010 00000 011 133344444433 4567888877653221110000 0001
Q ss_pred CCceeeecCCCeEEEEeCC-------------cEEEEEcCCCceEeee--ccCCCc-EEEEEEcCCCcEEEEEcCC----
Q 010784 307 GVPVDMKCHESMLYIASGS-------------SVVTIDLRTMQKVMTP--AICKPI-LHSFSIMPSKSLICTGGIG---- 366 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-------------~i~~~d~~~~~~~~~~--~~~~~~-v~~v~~~~~~~~l~~~~~d---- 366 (501)
+....+......+++..|. .+.+||..+.+-.... ..+... -.++...|++++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 1111111234445554431 4667777766544332 222222 2345667899999999843
Q ss_pred -------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784 367 -------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 367 -------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
. +.+||..+.+-. .+..+........+..+.|+ ++++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~----~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFY----KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEE----ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCcee----ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 3 899998765411 11212111122233445677 88888764
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.0025 Score=57.42 Aligned_cols=229 Identities=8% Similarity=-0.026 Sum_probs=133.1
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce--eeeccCCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC--QRCFKGHNG 207 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~--~~~~~~h~~ 207 (501)
...|+..++.........+........+++|.+. ++.++++-...+.|..++ .+.. ...+...-.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~------------~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS------------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG------------GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC------------CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence 4667777777532112222222245678899873 456666766778888887 3321 112222223
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEE
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVW 286 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vw 286 (501)
....+++. ...+.++++-...+.|.+++++.... .............+++.|..+.++++-. ..+.|...
T Consensus 80 ~p~glavd---~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 80 SPDGLACD---WLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCCEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred CccEEEEE---cCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 44566763 12455666656678899999876432 1222233345678999885565555542 25677777
Q ss_pred ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C
Q 010784 287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I 365 (501)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~ 365 (501)
++...... ......-...+.+++++++..|+.+. .
T Consensus 151 ~~dG~~~~--------------------------------------------~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 151 GMDGSSRF--------------------------------------------IIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp ETTSCSCE--------------------------------------------EEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EcCCCCeE--------------------------------------------EEEECCCCCccEEEEeccCCEEEEEECC
Confidence 76532110 00011123457899998655555444 4
Q ss_pred Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
.. |..+|+...... ....+.......+++..+.++.+-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~~------~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQ------AVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCSCE------EEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceE------EEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 45 999998643211 111223445678888777777776788999999998888776663
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.0026 Score=57.43 Aligned_cols=228 Identities=9% Similarity=-0.043 Sum_probs=131.5
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeee-ccCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRC-FKGH 205 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~-~~~h 205 (501)
..|+..++.+. .....+. .......++|.+. ++.++++-...+.|..++ .+ ..... +...
T Consensus 10 ~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~------------~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 10 HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETT------------TTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred CeEEEEECCCc-ceEehhc-CCCceEEEEEEeC------------CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 34666677653 3333333 3345788999873 345666666678899888 33 22222 2222
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVR 284 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~ 284 (501)
-.....+++. ...+++.++-..++.|.+.+++.... .......-.....+++.|.++.++++.... +.|.
T Consensus 76 ~~~p~glavd---~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 76 IQAPDGLAVD---WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp CSCCCEEEEE---TTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCcCEEEEe---ecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 2345677774 12445555556678999999875431 122222334567889987566666655443 6777
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
..++..... . ......-.....+++++++..|+.+.
T Consensus 147 ~~~~dG~~~-~-------------------------------------------~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 147 KGGLNGVDI-Y-------------------------------------------SLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp EEETTSCCE-E-------------------------------------------EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCCe-E-------------------------------------------EEEECCCCCceEEEEeccCCEEEEEE
Confidence 777643211 0 00011134567899998765555444
Q ss_pred -CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 365 -IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 365 -~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
... |..+|+..... +.+............+++..+.++.+-...+.|..++..+++.+..+.
T Consensus 183 ~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444 99999874321 111111112234677888766777776788899999988887766663
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=9.8e-05 Score=74.37 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=132.1
Q ss_pred cCcEEEEeeCCC-----------ceEEec--CCce--eeecc-CCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEec
Q 010784 177 TENVLVTSSCDH-----------SIRLWW--KGSC--QRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSL 239 (501)
Q Consensus 177 ~~~~l~s~~~dg-----------~i~vwd--~~~~--~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~ 239 (501)
++++++.|+.++ .+.+|| +++- +..+. .+.....++++. .++.+++.|+. +..+.+||.
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~----~~g~lyv~GG~~~~~v~~yd~ 272 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD----GNGQIVVTGGNDAKKTSLYDS 272 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC----TTSCEEEECSSSTTCEEEEEG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC----CCCCEEEeCCCCCCceEEecC
Confidence 678888887543 477888 3221 22221 122233345553 68889999884 458999999
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CC-----CeEEEEECCCCccccceecc-cceecCCCceee
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KD-----SKVRVWDTSTSSAVRSSCCV-GMTSVPGVPVDM 312 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~d-----g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 312 (501)
.+..- ..+..+...... .++.+.+ ++++++.|+ .+ ..+.+||..+.+........ ......... .+
T Consensus 273 ~t~~W----~~~~~~~~~R~~-~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~ 345 (656)
T 1k3i_A 273 SSDSW----IPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GL 345 (656)
T ss_dssp GGTEE----EECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GG
T ss_pred cCCce----eECCCCCccccc-cceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ce
Confidence 87642 122222221111 2334443 677888888 34 56899999876532210000 000000000 11
Q ss_pred ecCCCeEEEEe-----------CCcEEEEEcCCCceEeeeccCC---------CcEEEEEEc-CCCcEEEEEcCC-----
Q 010784 313 KCHESMLYIAS-----------GSSVVTIDLRTMQKVMTPAICK---------PILHSFSIM-PSKSLICTGGIG----- 366 (501)
Q Consensus 313 ~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~-~~~~~l~~~~~d----- 366 (501)
....+.+++.. ...+..||..+.........+. ..-.++.+. .++++++.|+.+
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 11111122221 2367888988766433222111 112344443 378888888731
Q ss_pred -------cEEEEecCCCCCCCCCCCcccccCcccC-eEEEEecCC-eEEEEecCC-----------CcEEEEeCCCcccc
Q 010784 367 -------KAMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPY-KIVTGGRDD-----------LRINIWETDTGMLA 426 (501)
Q Consensus 367 -------~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~-~~l~~gs~d-----------g~i~iwd~~~~~~~ 426 (501)
.|.+||..+.+-. .+..-..+... -.+++..|+ ++++.|+.+ ..+.+||..+.+-.
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~----~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNT----VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEE----EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CcCCcceEEEcCCCCCCCee----EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 3566776654321 01100111111 223445566 777777643 46899998775432
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
..-.. ......-....+.++|+.++.||.
T Consensus 502 ~~~~~---~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPN---SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCC---SSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCC---CCccccccHhhcCCCcEEEecCCC
Confidence 21100 111122234456789999999984
No 275
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.0011 Score=65.24 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 411 DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 411 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.+|.|..||+.+++.+-+..... .+..-.....+.+++.++ .||.++.||..+++.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~g~--~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGT--GDGYFKAFDAKSGKE 519 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred CcceEEEEECCCCCEEEEecCCC------CCcccceEeCCCEEEEEC--CCCcEEEEECCCCCE
Confidence 36889999999999887664321 222223334567788887 569999999887764
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.19 E-value=0.0069 Score=61.66 Aligned_cols=243 Identities=9% Similarity=-0.049 Sum_probs=135.7
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
.+|.++.....++.+. ...|+..++... ...... .....+..|+|.+. ++.++++-...+.|+.
T Consensus 387 ~~C~~~~~~p~Ll~an--~~~Ir~i~l~~~-~~~~l~-~~~~~~~gl~~d~~------------~~~lY~sD~~~~~I~~ 450 (791)
T 3m0c_C 387 KACKAVGSIAYLFFTN--RHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVA------------SNRIYWSDLSQRMICS 450 (791)
T ss_dssp CCCEETTSCCEEEEEC--BSSEEEECTTSC-CCEEEE-CSCSSEEEEEEETT------------TTEEEEEETTTTEEEE
T ss_pred ceeeeccccccccccc--ccceeEeeccCC-cceeee-cCCCceEEEeeccc------------CCeeEEeeccceeEEE
Confidence 3444444333333322 234555565542 222222 33455778888873 4556666666788888
Q ss_pred ec-CC-----ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 193 WW-KG-----SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 193 wd-~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
++ .+ .....+.........|++. ..+ +++++-...+.|.+.+++.... ...+...-.....|+
T Consensus 451 ~~l~g~~~~~~~~~vi~~~l~~P~GLAvD----~~~~~LY~tD~~~~~I~v~~ldG~~~------~~l~~~~l~~P~gIa 520 (791)
T 3m0c_C 451 TQLDRAHGVSSYDTVISRDIQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIV 520 (791)
T ss_dssp EEC--------CEEEECSSCSCCCEEEEE----TTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEE
T ss_pred EeccCCCCCcceeEEEecCCCCcceeeee----ecCCcEEEEecCCCeEEEEeCCCCeE------EEEEeCCCCCcceEE
Confidence 77 33 1222233233455667764 344 5556666778999999886542 222223334578899
Q ss_pred EeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784 266 VAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 266 ~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 344 (501)
+.|..+.++++-... +.|...++..... ...+...
T Consensus 521 VDp~~g~LYwtD~g~~~~I~~~~~dG~~~--------------------------------------------~~lv~~~ 556 (791)
T 3m0c_C 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------------------------------------------YSLVTEN 556 (791)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCCE--------------------------------------------EEEECSS
T ss_pred EecCCCCEEEecCCCCCeEEEEecCCCce--------------------------------------------EEEEeCC
Confidence 988556665554333 6677777654321 0011112
Q ss_pred CCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784 345 KPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~ 422 (501)
-.....|++++.+..|+.+. ... |...++...... .+..-...-....+|++..++++.+-...+.|...|..+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~----~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE----EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence 24578899997655555544 444 888888653321 111111112345677777777777777888999999888
Q ss_pred ccccccc
Q 010784 423 GMLANSL 429 (501)
Q Consensus 423 ~~~~~~~ 429 (501)
|+.+..+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 8766555
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.19 E-value=0.0017 Score=58.29 Aligned_cols=227 Identities=8% Similarity=-0.012 Sum_probs=124.1
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC--
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-- 188 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-- 188 (501)
.....+++++++.++++....+.|..+|.... ....+. -......+++.+ +|+++++.....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~-------------dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTS-------------NGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECT-------------TSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcC-------------CCcEEEEeccCCcc
Confidence 45788999999998888777888999987742 222222 235688899988 778666654332
Q ss_pred ceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc--cccee--eccCCCCce
Q 010784 189 SIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ--QALKA--TLYGHEKPI 261 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~~~~~v 261 (501)
.|..+| .++...... ........++.. +++..+++-..++.|.++|...+..... ..... .....-...
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~----~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPL----SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEES----SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCccccc----CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 355555 443322111 112222344432 3444455544578888888765321000 00000 001111233
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCe-EEEEe--CCcEEEEEcCCCce
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIAS--GSSVVTIDLRTMQK 337 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~~~d~~~~~~ 337 (501)
..| +++++.++++-...+.|..+++.. ++. .... .......+..+..++++ ++++. .+.|.++|.. ++.
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~---~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPE---IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCE---EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccE---EEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 455 664556667777788999999875 321 1101 11111334445554443 45554 3589999875 544
Q ss_pred Ee--eeccCCCcEEEEEEc---CCCcEEEEEc
Q 010784 338 VM--TPAICKPILHSFSIM---PSKSLICTGG 364 (501)
Q Consensus 338 ~~--~~~~~~~~v~~v~~~---~~~~~l~~~~ 364 (501)
.. .+........+++|. |++..|+.++
T Consensus 245 ~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 245 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 22 333334568999998 7866555554
No 278
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.17 E-value=0.00013 Score=70.27 Aligned_cols=183 Identities=7% Similarity=0.000 Sum_probs=114.5
Q ss_pred CeEE-EEEeCCCeEEEEECCCCccccceecccceecCCCceeee----cCCCeEEEEeC-------------------Cc
Q 010784 271 SFLL-VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK----CHESMLYIASG-------------------SS 326 (501)
Q Consensus 271 ~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------------~~ 326 (501)
++++ ++...++.|.+.|+.+.+....... .....+..+. .+...++++.. +.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 4444 4444567899999999875443221 1112233333 33444444431 26
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---------------------------------------
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--------------------------------------- 367 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--------------------------------------- 367 (501)
+.++|..+.+...++.... ....++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8899999998887776433 456788999999988887331
Q ss_pred EEEEecCCCCCCCCCCC-cccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccc------------ccccccC
Q 010784 368 AMTWDIRRSQDAVKPQP-MAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGML------------ANSLLCN 432 (501)
Q Consensus 368 i~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~------------~~~~~~~ 432 (501)
|.+.|.++.+ ... +..+.. .....++.++|+ .+++++-.+.+|.++|+.+.+. ...+.
T Consensus 256 V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-- 328 (595)
T 1fwx_A 256 VKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-- 328 (595)
T ss_dssp EEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred EEEEeCcccC----CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence 4444444311 001 122221 234567889999 6777777899999999986531 22221
Q ss_pred CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
-......++|+++| ++.+... -++.|.+|++..
T Consensus 329 ----vG~gP~h~aF~~dG-~aY~t~~-ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 ----LGLGPLHTAFDGRG-NAYTSLF-LDSQVVKWNIED 361 (595)
T ss_dssp ----CCSCEEEEEECTTS-EEEEEET-TTTEEEEEEHHH
T ss_pred ----CCCCcceEEECCCC-eEEEEEe-cCCcEEEEEhhH
Confidence 23456788999999 6655554 679999999876
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0032 Score=59.57 Aligned_cols=235 Identities=11% Similarity=0.008 Sum_probs=122.3
Q ss_pred CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CC----cEEEEeccCCCccccccce
Q 010784 178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DA----TVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~ 251 (501)
+..|..+...+.|+.+| .+..+..+.........++|. ++++.|+.+.. ++ .+.+.+.. +... ..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d----~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~----~~ 219 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWT----HEADSMIITNDQNNNDRPNNYILTRE-SGFK----VI 219 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEEC----TTSSEEEEEECCSCTTSEEEEEEEGG-GTSC----SE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEe----CCCCEEEEEeCCCCcccceEEEEeCC-Ccee----ee
Confidence 34454444447888888 444455544455567889996 78886665554 22 23334432 2210 01
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
..+.. ......+++.|.++.++++-..++.|..++..++....
T Consensus 220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~------------------------------------ 262 (430)
T 3tc9_A 220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP------------------------------------ 262 (430)
T ss_dssp EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE------------------------------------
T ss_pred eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE------------------------------------
Confidence 11111 12345677887556666666677888888887542100
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccC---------------cccC
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDG---------------HVGS 394 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~---------------h~~~ 394 (501)
+.... .......++++|+|++|+.+ .... |..++....... ...+..+.+ .-..
T Consensus 263 ------~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 333 (430)
T 3tc9_A 263 ------LFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR--LTTPYIVCGQQGAKDWVDGVGKKARMHA 333 (430)
T ss_dssp ------EEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--ECCCEEEEECTTCBCCBCEEGGGCBBSS
T ss_pred ------EEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc--ccceEEEeccCCCCCCCCCCCcceEeCC
Confidence 00111 12345789999999855444 4445 888876532100 000011110 0112
Q ss_pred eE-EEEec--------CC-eEEEEecCCCcEEEEeCCCcccccccccC---CC---------CCCCcceeeeEeecc-cc
Q 010784 395 VT-QLHMD--------PY-KIVTGGRDDLRINIWETDTGMLANSLLCN---YP---------EEADISTGCSAMAVS-GC 451 (501)
Q Consensus 395 v~-~l~~~--------~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~---~~---------~~~~~~v~~~~~s~~-g~ 451 (501)
.. .++.. ++ .++++-...+.|+.++. +|+.....-.. .. ...-.....++++++ |.
T Consensus 334 P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 412 (430)
T 3tc9_A 334 PRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC 412 (430)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred CcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence 23 45553 44 67777667788999883 45433222110 00 001224678999995 55
Q ss_pred EEEEeecCCCceEEEeecc
Q 010784 452 RIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 452 ~l~s~~~d~~g~i~~w~~~ 470 (501)
++++-. ...+|+.++.+
T Consensus 413 lyVaD~--~n~rIr~i~~e 429 (430)
T 3tc9_A 413 FFIGDR--ENRRIRKIGYE 429 (430)
T ss_dssp EEEEEG--GGTEEEEEEEC
T ss_pred EEEEEC--CCCeEEEEccC
Confidence 555444 45778777653
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.0024 Score=55.07 Aligned_cols=204 Identities=10% Similarity=0.025 Sum_probs=122.4
Q ss_pred eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEE-EEeC--CcEEE
Q 010784 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY-IASG--SSVVT 329 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~~ 329 (501)
.+.+-...+..+++.|.++.++++...++.|...|.. ++.++...... ......+.+.++..+ ++.. +.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g----~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF----VKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS----CSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC----CCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 4556666799999998666677778889999999997 65544332211 123444454444444 4443 36777
Q ss_pred EEcCCCce---Eeeec------cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-------cCcc
Q 010784 330 IDLRTMQK---VMTPA------ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-------DGHV 392 (501)
Q Consensus 330 ~d~~~~~~---~~~~~------~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-------~~h~ 392 (501)
+++..... +.... ........++++|.++.|.++.+.. ..+|.+.. ... ...+..+ ..+.
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~--~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLS--SNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTC--SSCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-ccc--CCceeeecchhhcccccc
Confidence 77655432 12221 1244578999999987777776554 55555541 100 0011111 1123
Q ss_pred cCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCC----CCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 393 GSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPE----EADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 393 ~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
..+.+++++|. ++++.+.....+..+|.. |+.+..+...... .....-..++|.++|++.++ + +.+.++.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~ 248 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S--EPNRFYR 248 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E--TTTEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c--CCceEEE
Confidence 35789999998 777777788999999965 6666555332100 01124578999999986666 4 5565555
Q ss_pred ee
Q 010784 467 RD 468 (501)
Q Consensus 467 w~ 468 (501)
+.
T Consensus 249 f~ 250 (255)
T 3qqz_A 249 FT 250 (255)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0086 Score=54.29 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=120.5
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.+..|.+++ +..++.|. .+.+. ....+.+.-... ..+.+.+..+.+.+ ++..++.+. +|
T Consensus 81 ~~~~i~~~~-~~~~~~g~-~g~i~--~S~DgG~tW~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~-~g 142 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIVGE-PPIML--HTTDGGQSWSQIPLDPKLPGSPRLIKALG-------------NGSAEMITN-VG 142 (327)
T ss_dssp EEEEEEEET-TEEEEEEE-TTEEE--EESSTTSSCEECCCCTTCSSCEEEEEEEE-------------TTEEEEEET-TC
T ss_pred cEEEEEecC-CeEEEEEC-CCeEE--EECCCCCCceECccccCCCCCeEEEEEEC-------------CCCEEEEeC-Cc
Confidence 467888887 45555553 33332 222211211111 12345577888766 566666554 56
Q ss_pred ce-EEecCCceeee-ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SI-RLWWKGSCQRC-FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i-~vwd~~~~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.| +-.|.++.-.. ...+...+..+.+. +++.+++.+...+..+-+|-. +.. +..+ .......+..+.+
T Consensus 143 ~v~~S~DgG~tW~~~~~~~~~~~~~~~~~----~~~~~~~~g~~G~~~~S~d~g-G~t---W~~~--~~~~~~~~~~~~~ 212 (327)
T 2xbg_A 143 AIYRTKDSGKNWQALVQEAIGVMRNLNRS----PSGEYVAVSSRGSFYSTWEPG-QTA---WEPH--NRTTSRRLHNMGF 212 (327)
T ss_dssp CEEEESSTTSSEEEEECSCCCCEEEEEEC----TTSCEEEEETTSSEEEEECTT-CSS---CEEE--ECCSSSCEEEEEE
T ss_pred cEEEEcCCCCCCEEeecCCCcceEEEEEc----CCCcEEEEECCCcEEEEeCCC-CCc---eeEC--CCCCCCccceeEE
Confidence 55 33454433222 23455678888885 667777666443333333321 111 1111 1234556788888
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee-ccCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP-AICK 345 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~ 345 (501)
.+ ++. ++.++.+|.+++.+...++. |.. +..- ..+.
T Consensus 213 ~~-~g~-~~~~~~~G~~~~s~~D~G~t------------------------------------W~~-----~~~~~~~~~ 249 (327)
T 2xbg_A 213 TP-DGR-LWMIVNGGKIAFSDPDNSEN------------------------------------WGE-----LLSPLRRNS 249 (327)
T ss_dssp CT-TSC-EEEEETTTEEEEEETTEEEE------------------------------------ECC-----CBCTTSSCC
T ss_pred CC-CCC-EEEEeCCceEEEecCCCCCe------------------------------------eEe-----ccCCcccCC
Confidence 76 454 44556678777664322211 000 0000 0012
Q ss_pred CcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784 346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~ 420 (501)
..+.++.+.+++.+++++..+.| .+....++. ...+.........+.++.+.++ .+++.| .+|.|.-++-
T Consensus 250 ~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~t---W~~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQT---WQQDVDVKKVPSNFYKILFFSPDQGFILG-QKGILLRYVT 320 (327)
T ss_dssp SCEEEEEESSSSCEEEEESTTCE-EEESSTTSS---CEECGGGTTSSSCCCEEEEEETTEEEEEC-STTEEEEECC
T ss_pred cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcc---cEEcCccCCCCCCeEEEEEECCCceEEEc-CCceEEEEcC
Confidence 35788889888888888776655 333333322 1111211122356788888666 777765 8898777653
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.0088 Score=60.87 Aligned_cols=225 Identities=8% Similarity=-0.044 Sum_probs=127.0
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce-ecccceecCCCc
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS-CCVGMTSVPGVP 309 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~ 309 (501)
...|+..++..... .. +......+..|++.+.++.++++-...+.|+.+++......... ...........-
T Consensus 403 ~~~Ir~i~l~~~~~------~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY------TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp BSSEEEECTTSCCC------EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccceeEeeccCCcc------ee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 45688888876542 22 22334566789998766777777777888999998753210000 111100111223
Q ss_pred eeeecCCCeEEEEeCC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCC-c-EEEEecCCCCCCCCCCC
Q 010784 310 VDMKCHESMLYIASGS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIG-K-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~ 384 (501)
+++.+....+|++... .|.+.++........+...-.....|++.|. +.++++-... . |...++......
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~----- 550 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----- 550 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-----
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-----
Confidence 4445556677777643 7888888765544444334456889999997 4444444332 4 888887653321
Q ss_pred cccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784 385 MAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG 462 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g 462 (501)
..+...-...+.|++++. +++++-...+.|...++.. .....+.... ..-....+|++ ++.+|+.+.. ..+
T Consensus 551 -~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~--~~l~~P~glav--~~~~lYwtD~-~~~ 623 (791)
T 3m0c_C 551 -SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE--KRLAHPFSLAV--FEDKVFWTDI-INE 623 (791)
T ss_dssp -EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT--TTTSSEEEEEE--ETTEEEEEET-TTT
T ss_pred -EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCC--CccCCCCEEEE--eCCEEEEEEC-CCC
Confidence 122222356889999976 7777766778899999864 3333332110 11122334554 4445555544 567
Q ss_pred eEEEeeccCCcc
Q 010784 463 LLQFRDFSNATC 474 (501)
Q Consensus 463 ~i~~w~~~~~~~ 474 (501)
.|...+..++..
T Consensus 624 ~I~~~dk~tG~~ 635 (791)
T 3m0c_C 624 AIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTCCC
T ss_pred EEEEEeCCCCcc
Confidence 787777555543
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.97 E-value=0.016 Score=61.76 Aligned_cols=323 Identities=11% Similarity=0.077 Sum_probs=162.0
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCc
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHS 189 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~ 189 (501)
.|.+.+.+.....+++ .+.+.++.+..+. ..... ..-.+.|.|+++.|..+. ...+++++.|.. |++
T Consensus 515 ~I~~As~n~~~vvva~---g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~-------~~~s~~~aVg~~~d~t 583 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV---GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDS-------NGLSPLCAIGLWTDIS 583 (1158)
T ss_dssp CCCEEEECSSEEEEEE---TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSS-------TTCCSEEEEEETTTTE
T ss_pred EEEEEEeCCCEEEEEE---CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCC-------cccccEEEEEECCCCE
Confidence 4777776665444443 3556666665421 11111 122457999998763210 113579999996 999
Q ss_pred eEEec--CCceee--eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeEE
Q 010784 190 IRLWW--KGSCQR--CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKLM 264 (501)
Q Consensus 190 i~vwd--~~~~~~--~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l 264 (501)
|+|++ ..+.+. .+.. .....++.+... ....+|..|-.||.+..+.++.... ...... .+-+ ..++.-.
T Consensus 584 v~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~--~~~~~L~igl~dG~l~~~~~d~~tg--~l~d~r~~~LG-~~pv~L~ 657 (1158)
T 3ei3_A 584 ARILKLPSFELLHKEMLGG-EIIPRSILMTTF--ESSHYLLCALGDGALFYFGLNIETG--LLSDRKKVTLG-TQPTVLR 657 (1158)
T ss_dssp EEEEETTTCCEEEEEECCS-SCCEEEEEEEEE--TTEEEEEEEETTSEEEEEEECTTTC--CEEEEEEEECC-SSCCEEE
T ss_pred EEEEECCCCCeEEEEECCC-CCCCcEEEEEEe--CCCcEEEEEeCCCeEEEEEEcCCCC--ccccceeEEcC-CCceEEE
Confidence 99998 222222 2221 223444444211 2456899999999987776653210 011111 1222 3455544
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC----CceeeecCCCeEEEEeCCcEEEEEcCCCceE--
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG----VPVDMKCHESMLYIASGSSVVTIDLRTMQKV-- 338 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-- 338 (501)
.+...+...+++.| +....++--+ ++.... ...... ..+.-...++.+++++++.+++..+...+..
T Consensus 658 ~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-----~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~ 730 (1158)
T 3ei3_A 658 TFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-----NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHI 730 (1158)
T ss_dssp EEESSSCEEEEEES-SSCEEEEESS-SSEEEE-----EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEE
T ss_pred EEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-----ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeE
Confidence 44432333333333 3444444432 221110 001111 1111122467777888888888877544332
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCC-------------------------------------------------c-E
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIG-------------------------------------------------K-A 368 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------------------------------------------------~-i 368 (501)
+++. -...+..++++|+.+.++.+..+ . |
T Consensus 731 ~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i 809 (1158)
T 3ei3_A 731 RTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNL 809 (1158)
T ss_dssp EEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEE
T ss_pred EEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEE
Confidence 2232 24567888888876554443311 1 4
Q ss_pred EEEecCCCCCCCCCCCcccccCcccCeEEEE---ecCC--eEEEEec----------CCCcEEEEeCCCcccccccccCC
Q 010784 369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLH---MDPY--KIVTGGR----------DDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~--~~l~~gs----------~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
++.|-.+.+.+ ....+.. ...+.+++ +..+ .+++.|+ ..|.|++|++..+++.....
T Consensus 810 ~lidp~t~~~i----~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~--- 881 (1158)
T 3ei3_A 810 LIIDQHTFEVL----HAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE--- 881 (1158)
T ss_dssp EEEETTTCCEE----EEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE---
T ss_pred EEEeCCCCeEE----EEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE---
Confidence 55555443321 0012222 23455554 3332 5666654 35789999997443222221
Q ss_pred CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
....+++++++-- +|+++++.+ ..|++|++...+
T Consensus 882 -~~v~g~v~al~~~-~g~Lla~ig----~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 882 -KEVKGAVYSMVEF-NGKLLASIN----STVRLYEWTTEK 915 (1158)
T ss_dssp -EEESSCEEEEEEE-TTEEEEEET----TEEEEEEECTTS
T ss_pred -EEcCCcCEEEeee-CCEEEEEcC----CEEEEEECCCCc
Confidence 1224566665432 455555443 689999998664
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.0076 Score=56.93 Aligned_cols=234 Identities=9% Similarity=0.018 Sum_probs=122.7
Q ss_pred CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---C-cEEEEeccCCCcccccccee
Q 010784 178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---A-TVRLWSLSSSGKRGQQALKA 252 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g-~i~iwd~~~~~~~~~~~~~~ 252 (501)
++++++-. .+.|+.+| ....+..+.........+++. ++++++++...+ . .+...+...... ...
T Consensus 153 g~Lyv~D~-~~~I~~id~~~g~v~~~~~~~~~P~giavd----~dG~lyVad~~~~~~~~gv~~~~~~~~~~-----~~~ 222 (433)
T 4hw6_A 153 DDLYWVGQ-RDAFRHVDFVNQYVDIKTTNIGQCADVNFT----LNGDMVVVDDQSSDTNTGIYLFTRASGFT-----ERL 222 (433)
T ss_dssp CEEEEECB-TSCEEEEETTTTEEEEECCCCSCEEEEEEC----TTCCEEEEECCSCTTSEEEEEECGGGTTC-----CEE
T ss_pred CEEEEEeC-CCCEEEEECCCCEEEEeecCCCCccEEEEC----CCCCEEEEcCCCCcccceEEEEECCCCee-----ccc
Confidence 45544433 38898898 344555554455568899996 788844443321 1 133333322111 001
Q ss_pred eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
.+. .-.....+++.+.++.++++-..++.|+.+|..++......
T Consensus 223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~----------------------------------- 266 (433)
T 4hw6_A 223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE----------------------------------- 266 (433)
T ss_dssp EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-----------------------------------
T ss_pred ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-----------------------------------
Confidence 111 12233456777645666666556778888887755321000
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccC---------------cccCe
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDG---------------HVGSV 395 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~---------------h~~~v 395 (501)
... +....-..++++|+++.|+.+. ... |+.++....... ......+.+ .-...
T Consensus 267 ------~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~~g~~dg~~~~a~~~~P 337 (433)
T 4hw6_A 267 ------VMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHSSPGWVDGMGTGARLWGP 337 (433)
T ss_dssp ------EEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred ------ecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCCCCccCCCcccceEEcCC
Confidence 000 0011224699999998555444 445 888876532110 000011111 11235
Q ss_pred EEEEe---------cCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-------------CCCCcceeeeEee-cccc
Q 010784 396 TQLHM---------DPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-------------EEADISTGCSAMA-VSGC 451 (501)
Q Consensus 396 ~~l~~---------~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s-~~g~ 451 (501)
..+++ .++ .++++-...+.|+.++. +|... ++.+... ...-.....++++ ++|.
T Consensus 338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 415 (433)
T 4hw6_A 338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC 415 (433)
T ss_dssp EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred ccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence 67888 677 78888778889999985 55433 3321100 0012235678998 5666
Q ss_pred EEEEeecCCCceEEEeecc
Q 010784 452 RIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 452 ~l~s~~~d~~g~i~~w~~~ 470 (501)
++++=. ...+|+..+.+
T Consensus 416 lyVaD~--~n~rIr~i~~e 432 (433)
T 4hw6_A 416 FYIGDC--DNHRVRKIAPE 432 (433)
T ss_dssp EEEEEG--GGTEEEEEEEC
T ss_pred EEEEeC--CCCEEEEEecC
Confidence 555544 45778777653
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.92 E-value=0.014 Score=54.43 Aligned_cols=232 Identities=11% Similarity=-0.057 Sum_probs=128.3
Q ss_pred EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 180 VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+|+.+. ...|+..+ .+.....+......+..|+|. +. +.++++-...+.|+.++++...... .....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d----~~~~~lywsD~~~~~I~~~~~~g~~~~~--~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTE----VASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRD 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEEC------C--CCEEEECSS
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeee----eccCceEEEecCCCeEEEEEcccCCCCC--cceEEEeCC
Confidence 444443 35677777 333333333445678899996 44 4455554567888888887532000 012222323
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
......+++.+..++++++-...+.|.+.++......
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~------------------------------------------- 194 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK------------------------------------------- 194 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-------------------------------------------
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-------------------------------------------
Confidence 3456788888656777777777788888887654210
Q ss_pred EeeeccCCCcEEEEEEcCCCcE-EEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784 338 VMTPAICKPILHSFSIMPSKSL-ICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD 412 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~-l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d 412 (501)
..+...-.....++++|.+.. +.+-.. .. |...++...... ......-...+.|++++. +++.+-+..
T Consensus 195 -~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~------~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 195 -TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------SLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp -EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE------EEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred -EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE------EEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 011112334678999986444 444332 24 888887653321 112222356789999976 777776678
Q ss_pred CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+.|..+|+.. .....+... ........++++. .+.++++-. ..+.|..++..++..
T Consensus 268 ~~I~~~d~dG-~~~~~~~~~--~~~l~~P~gl~v~-~~~lywtd~--~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 268 HSISSIDVNG-GNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEETTS-CCCEEEEEC--SSTTSSEEEEEEE-TTEEEEEES--SSCSEEEEESSSCCC
T ss_pred CEEEEEeCCC-CccEEEEeC--CCCCCCCEEEEEe-CCEEEEecC--CCCeEEEEEcCCCCc
Confidence 8999999864 333333211 0112233455652 333444443 567888888555443
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.91 E-value=0.00012 Score=73.83 Aligned_cols=228 Identities=10% Similarity=-0.027 Sum_probs=120.9
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceee-eccCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQR-CFKGH 205 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~-~~~~h 205 (501)
+.|++.++.+. .....+.. ...+..|+|.+. ++.++++-...+.|+.++ .+ .... .+...
T Consensus 386 ~~I~~id~~~~-~~~~~~~~-~~~p~gla~d~~------------~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~ 451 (699)
T 1n7d_A 386 HEVRKMTLDRS-EYTSLIPN-LRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 451 (699)
T ss_dssp TC-CEECTTSC-CEECCSCC-CTTCCCCEEETT------------TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC
T ss_pred cceEEEeCCCC-cceeeecc-CcceEEEccccc------------cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC
Confidence 45666666642 33333322 234667888872 344555555668888887 32 1222 22111
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVR 284 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~ 284 (501)
......|++. ...++++++-...+.|.+.++..... ...+.........|++.|..+.++++-... +.|.
T Consensus 452 ~~~P~glavD---~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~ 522 (699)
T 1n7d_A 452 IQAPDGLAVD---WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK 522 (699)
T ss_dssp C--CCCEECC---CSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred CCCcceEEEE---eeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence 2234456653 13455566656678899999876431 222222223346778877555544443222 5566
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEE
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTG 363 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~ 363 (501)
++++...... . .....-.....|+++|++ +++++-
T Consensus 523 ~~~~dG~~~~------------------------------------------~--l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 523 KGGLNGVDIY------------------------------------------S--LVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp BCCSSSCCCC------------------------------------------E--ESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred EEeCCCCCee------------------------------------------E--EEeCCCCCccEEEEeccCCEEEEEe
Confidence 6555432100 0 000112334578999875 444444
Q ss_pred cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
+... |..+++...... .+............|++..+.++++....+.|..++..+++.+..+.
T Consensus 559 ~~~~~I~~~d~dG~~~~----~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTTEEEEECSSSSCCE----EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCCeEEEEccCCCceE----EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4555 999998643211 11111111233456677777677666678899999998888877773
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.89 E-value=0.013 Score=52.85 Aligned_cols=220 Identities=11% Similarity=-0.052 Sum_probs=123.4
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCC---CccccccceeeccCCCCcee
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSS---GKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~ 262 (501)
..|+..| .+.....+.........++|. +. +.++++-..++.|..++++.. .. ....+...-....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d----~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-----~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTE----VASNRIYWSDLSQRMICSTQLDRAHGVSS-----YDTVISRDIQAPD 80 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEE----TTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCC
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEE----eCCCEEEEEECCCCcEEEEECCCCCCCcc-----cEEEEeCCCCCcC
Confidence 4577777 322222222234567788986 44 445555556789999998762 11 1112222223456
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
.+++.+.+++++++-...+.|.+.++...... ....
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--------------------------------------------~~~~ 116 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------------------------------------TLFR 116 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEE--------------------------------------------EEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceE--------------------------------------------EEEE
Confidence 78887656666677677788888887643210 0011
Q ss_pred cCCCcEEEEEEcCCC-cEEEEEcCC-c-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC--eEEEEecCCCcEE
Q 010784 343 ICKPILHSFSIMPSK-SLICTGGIG-K-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY--KIVTGGRDDLRIN 416 (501)
Q Consensus 343 ~~~~~v~~v~~~~~~-~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~l~~gs~dg~i~ 416 (501)
........++++|.+ .++++.... . |...++..... ..+ ...-...+.|+++++ +++.+-+..+.|.
T Consensus 117 ~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 112456789999854 444444333 4 88887753221 122 122346789999976 7777777788999
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.+|+.. .....+... .........+++. .+..+++-. ..+.|..++..++.
T Consensus 190 ~~d~dg-~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~--~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 190 SIDVNG-GNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGS 240 (316)
T ss_dssp EEETTS-CSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEET--TTTEEEEEETTTCC
T ss_pred EEecCC-CceEEEeec--CCccCCcEEEEEE-CCEEEEEEC--CCCeEEEEeCCCCc
Confidence 999864 333333211 0112234567774 344444443 56888888865554
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.89 E-value=0.013 Score=53.03 Aligned_cols=273 Identities=8% Similarity=-0.002 Sum_probs=138.7
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec----ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL----SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~----~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
...+.+|.+.+++..++.|.. +.|. ...+.+ +.-... ......+.+|.|.+ +..++ ++
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~-g~i~-~s~DgG-~tW~~~~~~~~~~~~~~~~i~~~~--------------~~~~~-~g 96 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVN-ATLM-ETRDGG-QTWEPRTLVLDHSDYRFNSVSFQG--------------NEGWI-VG 96 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETT-TEEE-EESSTT-SSCEECCCCCSCCCCEEEEEEEET--------------TEEEE-EE
T ss_pred CCcEEEEEECCCCcEEEEcCC-CeEE-EeCCCC-CCCeECCCCCCCCCccEEEEEecC--------------CeEEE-EE
Confidence 345888888877777776654 4332 222222 211111 12344688888865 34444 45
Q ss_pred CCCceEEec-CCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-CCccccccceeeccCCCCc
Q 010784 186 CDHSIRLWW-KGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-SGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 186 ~dg~i~vwd-~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 260 (501)
.+|.|..-. .++.-.... .+.+.+..+.+. .++..++.+ .+|.| |.... +.. -..........
T Consensus 97 ~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~----~~~~~~~~~-~~g~v--~~S~DgG~t-----W~~~~~~~~~~ 164 (327)
T 2xbg_A 97 EPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKAL----GNGSAEMIT-NVGAI--YRTKDSGKN-----WQALVQEAIGV 164 (327)
T ss_dssp ETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEE----ETTEEEEEE-TTCCE--EEESSTTSS-----EEEEECSCCCC
T ss_pred CCCeEEEECCCCCCceECccccCCCCCeEEEEEE----CCCCEEEEe-CCccE--EEEcCCCCC-----CEEeecCCCcc
Confidence 566555543 333322221 233457777765 445555554 45644 32222 321 11222344557
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEE-EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRV-WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
+..+.+.+ ++.+++.+ .+|.+.. .|- .++. .+.+.
T Consensus 165 ~~~~~~~~-~~~~~~~g-~~G~~~~S~d~-gG~t-----------------------------------------W~~~~ 200 (327)
T 2xbg_A 165 MRNLNRSP-SGEYVAVS-SRGSFYSTWEP-GQTA-----------------------------------------WEPHN 200 (327)
T ss_dssp EEEEEECT-TSCEEEEE-TTSSEEEEECT-TCSS-----------------------------------------CEEEE
T ss_pred eEEEEEcC-CCcEEEEE-CCCcEEEEeCC-CCCc-----------------------------------------eeECC
Confidence 88888886 55555554 4454433 332 1110 00110
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
......+..+.+.+++.+++.+..+.+++.+...++. ...+..- ..+...+.++.+.++ .+++++ .+|.| +
T Consensus 201 --~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~ 273 (327)
T 2xbg_A 201 --RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-L 273 (327)
T ss_dssp --CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-E
T ss_pred --CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-E
Confidence 1124567788888988877766554476663221211 0001110 012235888989887 777776 57777 4
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+....|+.-..+... ......+..+.|.+++..+++| .+|.|.-++
T Consensus 274 ~S~DgG~tW~~~~~~--~~~~~~~~~v~~~~~~~~~~~G---~~G~i~~~~ 319 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDV--KKVPSNFYKILFFSPDQGFILG---QKGILLRYV 319 (327)
T ss_dssp EESSTTSSCEECGGG--TTSSSCCCEEEEEETTEEEEEC---STTEEEEEC
T ss_pred EeCCCCcccEEcCcc--CCCCCCeEEEEEECCCceEEEc---CCceEEEEc
Confidence 444545433333211 1123456788887666655544 558776655
No 289
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.89 E-value=4.4e-06 Score=76.72 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=42.6
Q ss_pred CcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHH
Q 010784 17 TTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLF 64 (501)
Q Consensus 17 ~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~ 64 (501)
...+.+||+|++.+||+||+.+|+.++++|||+|+.++.+..+|+.+-
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~ 53 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeec
Confidence 456788999999999999999999999999999999998888887543
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.88 E-value=0.025 Score=56.02 Aligned_cols=321 Identities=12% Similarity=0.021 Sum_probs=172.1
Q ss_pred CCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-C
Q 010784 111 KPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-D 187 (501)
Q Consensus 111 ~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d 187 (501)
..+..|++++ .+.+..+-...+.|.+.+... ....++ ...-.....|++.|. .|.+++|--. .
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~~l~~P~~Iavdp~------------~g~ly~tD~g~~ 149 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQELDQPRAIALDPS------------SGFMYWTDWGEV 149 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCSCCCCEEEETT------------TTEEEEEECSSS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeCCCCCCceEEEecC------------CCeEEEeccCCC
Confidence 4578899997 666777777789999999874 333333 244456778899883 3445554322 3
Q ss_pred CceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 188 HSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
+.|...+ .|.....+. ..-.....|++. +++..|+ +-...+.|...|++.... .....+.......|
T Consensus 150 ~~I~r~~~dG~~~~~l~~~~~~~P~Glald----~~~~~LY~aD~~~~~I~~~~~dG~~~------~~~~~~~~~~P~gi 219 (619)
T 3s94_A 150 PKIERAGMDGSSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGTNR------QAVVKGSLPHPFAL 219 (619)
T ss_dssp CEEEEEETTSCSCEEEECSSCSSEEEEEEE----TTTTEEEEEETTTCCEEEESSSCCEE------C---------CCCE
T ss_pred CEEEEEECCCCceEEEEeCCCCCCcEEEEE----ccCCEEEEEeCCCCeEEEecCCCCcc------EEEEeCCCCCceEE
Confidence 4555555 444433332 233456788885 5444544 444567888888875432 11111111122355
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCcccccee----------cccce-ec-----------CCCceee----------
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC----------CVGMT-SV-----------PGVPVDM---------- 312 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----------~~~~~-~~-----------~~~~~~~---------- 312 (501)
++. .+.++++-...+.|...|..+++...... ..+.. .+ ...-.++
T Consensus 220 ~~~--~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 220 TLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp EES--SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred EEe--CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceE
Confidence 665 33566665667888888887665321100 00000 00 0000111
Q ss_pred ec----------------CCCeEEEEeCCcEEEEEcCCCceEe-eec-cCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEe
Q 010784 313 KC----------------HESMLYIASGSSVVTIDLRTMQKVM-TPA-ICKPILHSFSIMPS-KSLICTGGIGK-AMTWD 372 (501)
Q Consensus 313 ~~----------------~~~~~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd 372 (501)
.+ ....++++....|+..++....... .+. ..-..+.+++|.+. +.++++-...+ |+.++
T Consensus 298 ~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~ 377 (619)
T 3s94_A 298 ACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF 377 (619)
T ss_dssp ECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEE
Confidence 00 1113444555677777776543211 111 11345788999985 44455544555 98888
Q ss_pred cCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
+...... ..+...-.....+++++. .++.+-+..+.|.+.++... ....+.. ..-.....+++.|..
T Consensus 378 ~~g~~~~------~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~----~~l~~P~~iavdp~~ 446 (619)
T 3s94_A 378 IDGSGSQ------FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILIS----EDLEEPRAIVLDPMV 446 (619)
T ss_dssp TTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC----TTCCSEEEEEEETTT
T ss_pred cCCCccE------EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEE----CCCCCeeeEEEEcCC
Confidence 8754321 122222345678888863 78887778899999998643 3333321 123456789999874
Q ss_pred cEEEEeecCCCceEEEee
Q 010784 451 CRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w~ 468 (501)
.+|+.+.......|...+
T Consensus 447 G~ly~tD~g~~~~I~r~~ 464 (619)
T 3s94_A 447 GYMYWTDWGEIPKIERAA 464 (619)
T ss_dssp TEEEEEECSSSCEEEEEE
T ss_pred CcEEEecCCCCCEEEEEc
Confidence 444443321224444444
No 291
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.87 E-value=0.0033 Score=64.25 Aligned_cols=153 Identities=11% Similarity=0.047 Sum_probs=88.7
Q ss_pred CceEEee-CCcEEEee-----cCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 113 HDHILLD-NNDIFSTQ-----GSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 113 i~~~~~~-~~~~~~~~-----g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
+....+| |||+++|. |+....|.++|+.++ ......+. .....+.|+| ||+.|+...
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-------------Dg~~l~y~~ 239 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-------------DHTSLFYVT 239 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-------------STTEEEEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-------------CCCEEEEEE
Confidence 5678999 99998884 334467999999875 32211121 1245678888 787777766
Q ss_pred CCC-----ceEEec--CCce--eeecc-CCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccc--
Q 010784 186 CDH-----SIRLWW--KGSC--QRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQAL-- 250 (501)
Q Consensus 186 ~dg-----~i~vwd--~~~~--~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~-- 250 (501)
.|. .|.+++ ++.. ...+. ........+.|+ ++|++|+..+. ...|.++|+.++.. ..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~ 311 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA----ADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTL 311 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC----TTSSEEEEEEECSSCEEEEEEESSSCTT----CCCE
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC----CCCCEEEEEecCCCCceEEEEECCCCCC----Ccee
Confidence 552 466666 3221 12222 223345677886 89998876552 34688888876531 01
Q ss_pred eeeccCCCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCC
Q 010784 251 KATLYGHEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTST 290 (501)
Q Consensus 251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~ 290 (501)
.............+.|+. ++.+++....+ ..|..+|+.+
T Consensus 312 ~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 312 EIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 122233344555555542 45455554443 3677777764
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.86 E-value=0.028 Score=55.81 Aligned_cols=324 Identities=9% Similarity=0.018 Sum_probs=175.5
Q ss_pred CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+..|++++ ++.++.+....+.|..+++... .....+..-......|++.+. .+++.++-...+.|
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~GlAvD~~------------~~~LY~tD~~~~~I 104 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGMAVDWL------------GKNLYWADTGTNRI 104 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETT------------TTEEEEEETTTTEE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceEEEEeC------------CCEEEEEECCCCEE
Confidence 466888986 4565666666788888887642 222333322345667888752 35666766667888
Q ss_pred EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.+.+ .+.....+. ..-..-..|++. |....|+... ..+.|...+++.... ..+...-.....|++
T Consensus 105 ~v~~~dG~~~~~l~~~~l~~P~~iavd----p~~G~lY~tD~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~Glal 173 (628)
T 4a0p_A 105 EVSKLDGQHRQVLVWKDLDSPRALALD----PAEGFMYWTEWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTI 173 (628)
T ss_dssp EEEETTSTTCEEEECSSCCCEEEEEEE----TTTTEEEEEECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEE
T ss_pred EEEecCCCcEEEEEeCCCCCcccEEEc----cCCCeEEEeCCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEE
Confidence 8888 554433332 333456788885 5444555444 256777777765442 222223445678999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~ 344 (501)
.+..+.+.++-...+.|...|+..... ... ......+..+...++.++++.. +.|...|..+++....+...
T Consensus 174 D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-----~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~ 247 (628)
T 4a0p_A 174 DYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-----ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGH 247 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEE-----EECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred ccccCEEEEEECCCCEEEEEcCCCCce-EEe-----eccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence 975666667667788999999976433 111 1223456677777777777764 46777776555432222111
Q ss_pred CCcEEE------------------------EEE----------cC-------CC-------cEEEEEcCCcEEEEecCCC
Q 010784 345 KPILHS------------------------FSI----------MP-------SK-------SLICTGGIGKAMTWDIRRS 376 (501)
Q Consensus 345 ~~~v~~------------------------v~~----------~~-------~~-------~~l~~~~~d~i~iwd~~~~ 376 (501)
...... +++ .| ++ .+++.+....|+-..+...
T Consensus 248 ~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~ 327 (628)
T 4a0p_A 248 LDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQ 327 (628)
T ss_dssp CCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTT
T ss_pred CCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccc
Confidence 000000 111 11 11 1222222222433333321
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCC-CCCCCcceeeeEeeccccEE
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNY-PEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l 453 (501)
... .....+.+ -..+..|+|++. .++.+-...+.|+.++.........+.... ..........+++...++.|
T Consensus 328 ~~~---~~~l~~~~-~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL 403 (628)
T 4a0p_A 328 QSP---DIILPIHS-LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI 403 (628)
T ss_dssp CCC---CEECCCTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred cCc---eEEEEehh-cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence 100 00011111 245778999886 677766677889988875433222221100 00113457789998887766
Q ss_pred EEeecCCCceEEEeecc
Q 010784 454 VTASYGEPGLLQFRDFS 470 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~ 470 (501)
..+.. ..+.|.+.++.
T Consensus 404 Y~td~-~~~~I~v~~~~ 419 (628)
T 4a0p_A 404 YWTCE-ATNVINVTRLD 419 (628)
T ss_dssp EEEET-TTTEEEEEETT
T ss_pred EEEcC-CCCEEEEEECC
Confidence 55443 45677776654
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.81 E-value=0.0032 Score=64.36 Aligned_cols=159 Identities=12% Similarity=0.050 Sum_probs=86.9
Q ss_pred ceEEEEeeecCCCCCCEEEEee-CC----CcEEEEeccCC-CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-
Q 010784 208 PVSTLSDKLLGDGSGKILASGG-ED----ATVRLWSLSSS-GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD- 280 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~-~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d- 280 (501)
.+...+||| |+|++|+-+. .+ ..|+++|+.++ +. ....+.. ....+.|+| +++.|+....|
T Consensus 175 ~~~~~~~S~---PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~~~~~---~~~~~~Wsp-Dg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAP---PEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IADKVSG---TNGEIVWGP-DHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECT---TTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCCCEEE---ECSCCEECS-STTEEEEEEECT
T ss_pred EEeeeEecC---CCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCccccC---ceeeEEEec-CCCEEEEEEECC
Confidence 566777741 6888777443 23 35999999987 52 1111111 134578998 55555555544
Q ss_pred ----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcC
Q 010784 281 ----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMP 355 (501)
Q Consensus 281 ----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~ 355 (501)
..|.++++.+++.. ....+. .......++.|+|
T Consensus 243 ~~~~~~v~~~~lgt~~~~------------------------------------------~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSE------------------------------------------DVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp TCCEEEEEEEETTSCGGG------------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred CCCCCEEEEEECCCCchh------------------------------------------cEEEEecCCCceEEEEEECC
Confidence 24556666544210 001111 1223456789999
Q ss_pred CCcEEEEEc---CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC----CcEEEEeCCC
Q 010784 356 SKSLICTGG---IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD----LRINIWETDT 422 (501)
Q Consensus 356 ~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d----g~i~iwd~~~ 422 (501)
||++|+..+ ... |+++|+.++... ...........+...++.|+.. .+++....+ ..|..+++.+
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAH--NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTC--CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCC--ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 999887655 334 899999875211 0001122233455677776656 665554443 3567777765
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.79 E-value=0.019 Score=51.73 Aligned_cols=220 Identities=8% Similarity=-0.057 Sum_probs=128.1
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc-
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP- 309 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~- 309 (501)
...|+..+++..... ....+. .......+.|.+.++.++++-...+.|..+++.......... ......+
T Consensus 12 ~~~I~~i~l~~~~~~----~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~----~~~l~~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKEN----ATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV----VSGLLSPD 82 (318)
T ss_dssp EEEEEEEETTCTTSC----CEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE----EECCSCCC
T ss_pred cCeEEEEECCCCceE----EEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE----cCCCCCcc
Confidence 467999999875310 111111 123456888987667777777778899999987663211100 0111223
Q ss_pred -eeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C-Cc-EEEEecCCCCCCCCCC
Q 010784 310 -VDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I-GK-AMTWDIRRSQDAVKPQ 383 (501)
Q Consensus 310 -~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~-d~-i~iwd~~~~~~~~~~~ 383 (501)
+.+.+....++++.. +.|.++++..................+++.|.+..|+.+. . .. |...++.....
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----- 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----- 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----
Confidence 334444566666654 3788888865443333333445678999998644444443 2 34 88888764321
Q ss_pred Ccccc-cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 384 PMAEL-DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 384 ~~~~~-~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
..+ ...-...+.|+++++ +++.+-+..+.|..+|+.. .....+.. .......++++.. +..+++-. .
T Consensus 158 --~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~----~~~~~P~glav~~-~~lywtd~--~ 227 (318)
T 3sov_A 158 --FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVK----GSLPHPFALTLFE-DILYWTDW--S 227 (318)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC----SCCSCEEEEEEET-TEEEEEET--T
T ss_pred --EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEec----CCCCCceEEEEeC-CEEEEEec--C
Confidence 122 122345689999985 7777777889999999864 33333321 1123445666643 33444433 5
Q ss_pred CceEEEeeccCCcc
Q 010784 461 PGLLQFRDFSNATC 474 (501)
Q Consensus 461 ~g~i~~w~~~~~~~ 474 (501)
.+.|..++..++..
T Consensus 228 ~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 228 THSILACNKYTGEG 241 (318)
T ss_dssp TTEEEEEETTTCCS
T ss_pred CCeEEEEECCCCCc
Confidence 68888888765553
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.0087 Score=56.52 Aligned_cols=152 Identities=7% Similarity=0.051 Sum_probs=89.7
Q ss_pred CCceEEeeC--CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC
Q 010784 112 PHDHILLDN--NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH 188 (501)
Q Consensus 112 ~i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg 188 (501)
.+..|+++| ++.++++-.. +.|..+|..++ . +..+.........|+|++ +++.|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~-~-v~~~~~~~~~P~~ia~d~-------------~G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE-Y-VSTVYSGLSKVRTICWTH-------------EADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT-E-EEEEECCCSCEEEEEECT-------------TSSEEEEEECCSC
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC-E-EEEEecCCCCcceEEEeC-------------CCCEEEEEeCCCC
Confidence 378999997 3444444333 88888998753 3 333333455688999998 7785554443 22
Q ss_pred ----ceEEec-CCcee--eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 189 ----SIRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 189 ----~i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
.+.+.+ .+... ..+.. ......+++. + ++.++++-..++.|..++...+.. ..+.... ....
T Consensus 202 ~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavd----p~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~-~~~~ 271 (430)
T 3tc9_A 202 NDRPNNYILTRESGFKVITELTK-GQNCNGAETH----PINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQ-DSGW 271 (430)
T ss_dssp TTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEEC----TTTCCEEEEETTTTEEEEEETTTTEE----EEEEECS-SSSC
T ss_pred cccceEEEEeCCCceeeeeeecc-CCCceEEEEe----CCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcC-CCCc
Confidence 233333 22221 22221 2234566774 6 677666666778999999876531 0111111 1234
Q ss_pred eeEEEEeecCCe-EEEEEeCCCeEEEEECCC
Q 010784 261 IKLMSVAGHKSF-LLVTISKDSKVRVWDTST 290 (501)
Q Consensus 261 v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~ 290 (501)
-..++++| +++ ++++-...+.|..++...
T Consensus 272 P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 272 EFHIQFHP-SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence 57899998 555 666666788999987653
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.016 Score=55.17 Aligned_cols=252 Identities=8% Similarity=-0.007 Sum_probs=130.0
Q ss_pred CcEEEEeeCCCceEEec-CCceeeeccC----CCCceEEEEe-------eecCCCCCCEEEEeeCCC-------cEEEEe
Q 010784 178 ENVLVTSSCDHSIRLWW-KGSCQRCFKG----HNGPVSTLSD-------KLLGDGSGKILASGGEDA-------TVRLWS 238 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~----h~~~v~~l~~-------s~~~~~~~~~l~sg~~dg-------~i~iwd 238 (501)
++++++....+.|++.| ....+..+.. .......++| . ++++.|+.+...+ .|.+.+
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d----~~G~~lyvad~~~~~~~~~~~V~~i~ 227 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA----DEAEYMIVAIDYDGKGDESPSVYIIK 227 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB----CTTCEEEEEECCCTTGGGEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC----CCCCEEEEEeCCCCCcccCceEEEEe
Confidence 45555555456788888 4445544432 1234788888 7 7788666665543 255665
Q ss_pred ccCCCcccc---ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC-------CCccccceecccceecCCC
Q 010784 239 LSSSGKRGQ---QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS-------TSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~-------~~~~~~~~~~~~~~~~~~~ 308 (501)
......... ...+..+. ....++++|.++.++++-..++.|..+|+. ++..-...... ..+
T Consensus 228 r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~----~~g- 298 (496)
T 3kya_A 228 RNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN----NPN- 298 (496)
T ss_dssp CCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG----CTT-
T ss_pred cCCCCceeecccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc----ccc-
Confidence 333111000 01122221 234567887667777777788889999987 44210000000 000
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
. .+.+... ........++|+|+|++|+.+. ... |+.++....... .....
T Consensus 299 ~-------------------------~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~--~~~~~ 350 (496)
T 3kya_A 299 T-------------------------FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE--FITPY 350 (496)
T ss_dssp T-------------------------EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--ECCCE
T ss_pred c-------------------------cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce--ecccE
Confidence 0 0001111 1123457899999998555444 444 888665321100 00000
Q ss_pred ccc------Cc---------ccCeE-EEEec-------CC-eEEEEecCCCcEEEEeCCCcccccccccCCC--------
Q 010784 387 ELD------GH---------VGSVT-QLHMD-------PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-------- 434 (501)
Q Consensus 387 ~~~------~h---------~~~v~-~l~~~-------~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-------- 434 (501)
.+. ++ -.... .++.. +. .++++-+..++|+.++ .+|. +.++.+...
T Consensus 351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~ 428 (496)
T 3kya_A 351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGN 428 (496)
T ss_dssp EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSC
T ss_pred EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCcc
Confidence 111 11 11234 45554 45 7777777889999998 4553 334422100
Q ss_pred -----CC------CCcceeeeEeecc-ccEEEEeecCCCceEEEeeccCCcc
Q 010784 435 -----EE------ADISTGCSAMAVS-GCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 435 -----~~------~~~~v~~~~~s~~-g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.+ .-.....++++++ |.+.++=. ...+|+.+++.....
T Consensus 429 ~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~--~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 429 QWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ--VGHTIRTISMEQEEN 478 (496)
T ss_dssp SCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET--TTTEEEEEEECCCC-
T ss_pred ccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC--CCCEEEEEECCCCcc
Confidence 00 1233567899987 65555544 568888888776554
No 297
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.69 E-value=0.021 Score=49.19 Aligned_cols=207 Identities=10% Similarity=0.070 Sum_probs=117.2
Q ss_pred ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEE
Q 010784 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKIL 225 (501)
Q Consensus 148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l 225 (501)
.+.+-.+.+..++|.|+ .+.++++...++.|...| .++.++.+. .-....-.+++. +++.++
T Consensus 21 ~l~g~~~~lSGla~~~~------------~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~----~~g~~~ 84 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQ------------SNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI----GDNQFV 84 (255)
T ss_dssp ECTTCCSCEEEEEEETT------------TTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC----STTEEE
T ss_pred ECCCcccCcceeEEeCC------------CCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe----CCCEEE
Confidence 44555567999999983 345666677788888888 766666653 222466778874 677776
Q ss_pred EEeeCCCcEEEEeccCCCcccccccee-ec--cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC---Cccccceec
Q 010784 226 ASGGEDATVRLWSLSSSGKRGQQALKA-TL--YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST---SSAVRSSCC 299 (501)
Q Consensus 226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~---~~~~~~~~~ 299 (501)
++.-.++.+.++++............. .+ ...+.....|++.|..+ .|+++.......+|.+.. .........
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecc
Confidence 765567889999887654200000111 11 12455678999998544 455555544445555431 100000000
Q ss_pred ---ccc-eecCCCceeeecCCCeEEEEeCC--cEEEEEcCCCceEeeeccCC---------CcEEEEEEcCCCcEEEEEc
Q 010784 300 ---VGM-TSVPGVPVDMKCHESMLYIASGS--SVVTIDLRTMQKVMTPAICK---------PILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 300 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l~~~~ 364 (501)
... ....-....+....+.+++.+.. .+..+|... +.+..+.-.. .....|+|.++|+++++ +
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 000 01112223333444556666654 677788654 4444333221 36789999999986666 5
Q ss_pred CCc-EEEEec
Q 010784 365 IGK-AMTWDI 373 (501)
Q Consensus 365 ~d~-i~iwd~ 373 (501)
+.+ ++.+.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 555 776654
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.69 E-value=0.0089 Score=53.61 Aligned_cols=209 Identities=8% Similarity=0.151 Sum_probs=124.5
Q ss_pred CcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCC---EEEEeeC---CCcEEEEeccCCCccccc
Q 010784 176 RTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGK---ILASGGE---DATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 176 ~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~---~l~sg~~---dg~i~iwd~~~~~~~~~~ 248 (501)
|...+++.....+-+.+|| .++.++.+.. +.++.+...|...-.|+ ++++... +++|++|+++....
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---- 111 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---- 111 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred CCccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence 3556677777788999999 8888888764 56676665421111222 2333333 57899998853221
Q ss_pred cceeeccC------CC-CceeEEEE--eecCC-eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 249 ALKATLYG------HE-KPIKLMSV--AGHKS-FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 249 ~~~~~~~~------~~-~~v~~l~~--~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
.+..+.. .. ..+..+++ ++..+ .++++...+|.+..|++.....-.
T Consensus 112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~----------------------- 167 (355)
T 3amr_A 112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY----------------------- 167 (355)
T ss_dssp -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-----------------------
T ss_pred -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-----------------------
Confidence 1222211 11 45666777 55334 367888888999999884321000
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-Cc-ccCe
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GH-VGSV 395 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h-~~~v 395 (501)
.+.+.++++.. .+.+..+...+....|+.+-++. |..++....... +.+.+..+. ++ ...+
T Consensus 168 --------------~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~-~~~~v~~~~~g~l~aDv 231 (355)
T 3amr_A 168 --------------ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS-NGTVIDRADGRHLTRDI 231 (355)
T ss_dssp --------------EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS-CCEEEEEBSSSSBCSCE
T ss_pred --------------ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCC-CceEEEEecCCccccCc
Confidence 01133344443 45688889998888888888877 777775532210 012223321 22 2357
Q ss_pred EEEEe--cCC---eEEEEecCCCcEEEEeCC-Ccccccccc
Q 010784 396 TQLHM--DPY---KIVTGGRDDLRINIWETD-TGMLANSLL 430 (501)
Q Consensus 396 ~~l~~--~~~---~~l~~gs~dg~i~iwd~~-~~~~~~~~~ 430 (501)
..|++ .++ .+++++-.+.+..+||.. +.+.+..|.
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 77777 343 466666578899999996 667777774
No 299
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.68 E-value=0.023 Score=53.63 Aligned_cols=234 Identities=10% Similarity=0.036 Sum_probs=125.2
Q ss_pred CceEEeeCC---cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC--
Q 010784 113 HDHILLDNN---DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-- 187 (501)
Q Consensus 113 i~~~~~~~~---~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 187 (501)
+..|+++++ +.++++-.. +.|+.++..++ ... .+.........+++++ +|+++++....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g-~v~-~~~~~~~~P~giavd~-------------dG~lyVad~~~~~ 204 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ-YVD-IKTTNIGQCADVNFTL-------------NGDMVVVDDQSSD 204 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTT-EEE-EECCCCSCEEEEEECT-------------TCCEEEEECCSCT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCC-EEE-EeecCCCCccEEEECC-------------CCCEEEEcCCCCc
Confidence 789999984 666555444 88999998653 333 3334455688999998 77855554321
Q ss_pred -Cc-eEEec-CCcee--eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCc
Q 010784 188 -HS-IRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKP 260 (501)
Q Consensus 188 -g~-i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~ 260 (501)
.. +...+ .+... ..+. .......+++. + ++.++++-..++.|+.+|..++.. ....+. +....
T Consensus 205 ~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd----~~~G~lyv~d~~~~~V~~~d~~~g~~-----~~~~~~~~~~~~ 274 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTERLSLC-NARGAKTCAVH----PQNGKIYYTRYHHAMISSYDPATGTL-----TEEEVMMDTKGS 274 (433)
T ss_dssp TSEEEEEECGGGTTCCEEEEE-ECSSBCCCEEC----TTTCCEEECBTTCSEEEEECTTTCCE-----EEEEEECSCCSS
T ss_pred ccceEEEEECCCCeecccccc-ccCCCCEEEEe----CCCCeEEEEECCCCEEEEEECCCCeE-----EEEEeccCCCCC
Confidence 11 22233 11111 1111 12233456664 5 666666666778899998875541 011111 11222
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCC--Cccccceecccc---e---------ecCCCceeeec---------CCC
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTST--SSAVRSSCCVGM---T---------SVPGVPVDMKC---------HES 317 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~---~---------~~~~~~~~~~~---------~~~ 317 (501)
-..++++|.+..++++-...+.|+.++... +........... . ..-..+..+.+ ...
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 346899984333666666778999988653 221100000000 0 01122444555 444
Q ss_pred -eEEEEeC--CcEEEEEcCCCceEeeeccC------------------CCcEEEEEEc-CCCcEEEEEcCCc-EEEEecC
Q 010784 318 -MLYIASG--SSVVTIDLRTMQKVMTPAIC------------------KPILHSFSIM-PSKSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 318 -~~~~~~~--~~i~~~d~~~~~~~~~~~~~------------------~~~v~~v~~~-~~~~~l~~~~~d~-i~iwd~~ 374 (501)
.++++.. +.|+.++. ++. +.++.+. -.....|+++ +++.++++-..+. |+.+++.
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3455543 36777774 443 3222221 1236789999 5676666666555 8887764
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00099 Score=67.24 Aligned_cols=208 Identities=10% Similarity=-0.026 Sum_probs=117.8
Q ss_pred CCCceEEeeCC-cEEEeecCCeeeEEEEeccc---ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 111 KPHDHILLDNN-DIFSTQGSSIQNIKIDNFLS---ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 111 ~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
..+..|++++. +.++.+-...+.|..+++.. +......+.........|++.+. .++++++-..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~------------~g~LY~tD~~ 473 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI------------HSNIYWTDSV 473 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS------------SSBCEECCTT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee------------CCcEEEEecc
Confidence 44778899874 45555555667888888764 11222222222223455676642 4566676667
Q ss_pred CCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEee-CC-CcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 187 DHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGG-ED-ATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 187 dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
.+.|.+.+ .+..+..+. ........+++. +.+.+|+.+. .. +.|.+.+++.... .......-....
T Consensus 474 ~~~I~v~d~dg~~~~~l~~~~~~~P~giavD----p~~g~ly~td~~~~~~I~~~~~dG~~~------~~l~~~~l~~Pn 543 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTLFREQGSKPRAIVVD----PVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPN 543 (699)
T ss_dssp TSCEEEEBSSSCCEEEECCCSSCCCCCEECC----SSSSCCEECCCSSSCCEEBCCSSSCCC------CEESCSSCSSCC
T ss_pred CCeEEEEecCCCceEEEEeCCCCCcceEEEc----cCCCcEEEcccCCCCeEEEEeCCCCCe------eEEEeCCCCCcc
Confidence 78899998 554444332 222345677774 5444444433 22 6787777764331 111112223456
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEee
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMT 340 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~ 340 (501)
.|++++.++.++++-+..+.|.++++...... .+ .........+..+....+.++++.. +.|..++..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceE-EE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEE
Confidence 78999866777777777889999998753221 11 1111122345666666677777654 3788888777776665
Q ss_pred ecc
Q 010784 341 PAI 343 (501)
Q Consensus 341 ~~~ 343 (501)
+..
T Consensus 621 i~~ 623 (699)
T 1n7d_A 621 LAE 623 (699)
T ss_dssp CCT
T ss_pred eec
Confidence 543
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.51 E-value=0.044 Score=48.34 Aligned_cols=221 Identities=11% Similarity=0.118 Sum_probs=139.8
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
+.+|.|.|+..+.. ..+..-.-. +.-.+| ..+.++.-. ...+.++|+++.+.+... .....+.
T Consensus 48 ~~~VvIiDl~n~~~-----~~Rrpi~Ad----sAIMnP-~~~ViALra-g~~LQiFnletK~klks~------~~~e~Vv 110 (365)
T 2xzh_A 48 QAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDVT 110 (365)
T ss_dssp EEEEEEEETTSTTS-----CEEEECCCS----EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEE------ECSSCEE
T ss_pred CCEEEEEECCCCCC-----ccccccccc----eeeeCC-CccEEEEec-CCeEEEechHHhhhhcce------ecCCccE
Confidence 34789999988664 222222222 223466 455666655 688999999998654432 2233344
Q ss_pred eeec-CCCeEEEEeCCcEEEEEcCC-CceEeeeccC----CCcEEEEEEcCCCcEEEEEc----CC---c-EEEEecCCC
Q 010784 311 DMKC-HESMLYIASGSSVVTIDLRT-MQKVMTPAIC----KPILHSFSIMPSKSLICTGG----IG---K-AMTWDIRRS 376 (501)
Q Consensus 311 ~~~~-~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~----~d---~-i~iwd~~~~ 376 (501)
-..| +++.+.+.++..++-|++.. ..+.+.+..| ...|.....+++.++++..+ ++ | +.+|.....
T Consensus 111 fWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 111 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp EEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc
Confidence 4444 56778888999999999975 3455555544 46788888899988776554 22 4 888988865
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCC----eEEEEecC---CCcEEEEeCCCc-ccccccc------cCCCCCCCccee
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRD---DLRINIWETDTG-MLANSLL------CNYPEEADISTG 442 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~---dg~i~iwd~~~~-~~~~~~~------~~~~~~~~~~v~ 442 (501)
. .+.+++|......+....+ .+++-+.. .++++|-++... ..-..+. ...+.....---
T Consensus 191 ~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 191 V-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp E-------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred c-------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 4 3678888777666655432 45554322 268999998543 1111110 011122233445
Q ss_pred eeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
++..|+....+..-+ .-|.|+++|+.++...+.
T Consensus 264 amqvs~kygviyviT--K~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 264 AMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp EEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred EEEecccCCEEEEEe--CCcEEEEEEcccCcEEEE
Confidence 677888877777777 569999999998886544
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.48 E-value=0.16 Score=54.12 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=136.9
Q ss_pred cEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCC--CCCCEEEEeeC-CCcEEEEeccCCCcccccccee
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGD--GSGKILASGGE-DATVRLWSLSSSGKRGQQALKA 252 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~--~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~ 252 (501)
.+++.++ .+.+.+++ .+..... -..-...|.|+++.+.++ ..+++++.|.. |++|+|+++...+. ....
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~----~~~~ 598 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL----LHKE 598 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE----EEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe----EEEE
Confidence 4555554 56777775 3322111 112356899999864221 13579999996 99999999986542 1111
Q ss_pred eccCCCCceeEEEEee-cCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCcee---eecCCCeEEEEeCC-
Q 010784 253 TLYGHEKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVD---MKCHESMLYIASGS- 325 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 325 (501)
.+.. .....++.+.. .+..+|..|-.||.+.-+.+. +++.... ........+.. +...+...+++++.
T Consensus 599 ~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~----r~~~LG~~pv~L~~~~~~~~~~V~a~s~r 673 (1158)
T 3ei3_A 599 MLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR----KKVTLGTQPTVLRTFRSLSTTNVFACSDR 673 (1158)
T ss_dssp ECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE----EEEECCSSCCEEEEEESSSCEEEEEESSS
T ss_pred ECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc----eeEEcCCCceEEEEEeeCCceeEEEECCC
Confidence 2221 12334444432 234678889999998666554 3333211 11111112221 22223334455544
Q ss_pred cEEEEEcCCCceEeeeccCCCcE-EEEEEcCC--CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 326 SVVTIDLRTMQKVMTPAICKPIL-HSFSIMPS--KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v-~~v~~~~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
...++-- .++.... ...-..+ ....|+.. ..-++..+++.++|..+...+. -.+.++.- ...+..++++|
T Consensus 674 p~liy~~-~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~----~~~~~ipL-~~Tprri~y~~ 746 (1158)
T 3ei3_A 674 PTVIYSS-NHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQK----LHIRTVPL-YESPRKICYQE 746 (1158)
T ss_dssp CEEEEES-SSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSS----EEEEEEEC-SSEEEEEEEEG
T ss_pred CEEEEEc-CCceEEe-ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCC----eeEEEEeC-CCCceEEEEcC
Confidence 3333332 2332221 1111223 23345432 2345555555588888754321 12233322 35678888888
Q ss_pred C-eEEEEec-C------------------------------------------------CCcEEEEeCCCcccccccccC
Q 010784 403 Y-KIVTGGR-D------------------------------------------------DLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 403 ~-~~l~~gs-~------------------------------------------------dg~i~iwd~~~~~~~~~~~~~ 432 (501)
. +.++.+. . -+.|++.|..+.+.+..+...
T Consensus 747 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~ 826 (1158)
T 3ei3_A 747 VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL 826 (1158)
T ss_dssp GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC
Confidence 6 3322211 1 124777887777777666432
Q ss_pred CCCCCCcceeee---Eeecc-ccEEEEeec------C--CCceEEEeecc
Q 010784 433 YPEEADISTGCS---AMAVS-GCRIVTASY------G--EPGLLQFRDFS 470 (501)
Q Consensus 433 ~~~~~~~~v~~~---~~s~~-g~~l~s~~~------d--~~g~i~~w~~~ 470 (501)
. ...+.++ .|..+ ..+|++|+. + ..|.|.++++.
T Consensus 827 ~----nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 827 Q----NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp T----TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred C----CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 2 2333333 34433 468888763 1 45899999975
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.44 E-value=0.034 Score=49.54 Aligned_cols=230 Identities=13% Similarity=0.107 Sum_probs=112.2
Q ss_pred CCCEEEEee-CC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECC
Q 010784 221 SGKILASGG-ED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTS 289 (501)
Q Consensus 221 ~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~ 289 (501)
++.+++.|+ .+ ..+.++|..+..- ..+..+....... ++... ++.+++.|+.+ ..+.+||+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW----SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE----EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECC
Confidence 455666666 33 3678888876542 1122122111111 22222 56788888765 468899998
Q ss_pred CCc---cccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCC
Q 010784 290 TSS---AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSK 357 (501)
Q Consensus 290 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~ 357 (501)
+.+ .... ...........+...++.+++..| ..+.+||+.+.+-.. .+......-..+.+ ++
T Consensus 87 ~~~~~~W~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 87 ADEDGVWYSV----APMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG 160 (301)
T ss_dssp CCTTCCCEEE----CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT
T ss_pred CCCCCeeEEC----CCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC
Confidence 876 3211 111111111222223455555543 268889987765432 22211111122222 67
Q ss_pred cEEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcccc
Q 010784 358 SLICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLA 426 (501)
Q Consensus 358 ~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~ 426 (501)
++++.|+.+ . +.+||+.+.+-. .+..+...... .+++...+++++.|+.+ ..+.+||+.+.+-.
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~----~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWT----NVTPMATKRSG-AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEE----eCCCCCccccc-ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 777777632 3 889998775421 11112111111 12333345666666553 46899999875432
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT 473 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~ 473 (501)
..-.. . .......+...++++++.|+.+.. ..+.+||.....
T Consensus 236 ~~~~~---p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 236 TVTSM---T--TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EECCC---S--SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ECCCC---C--CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22110 1 111111222337788888875432 356677766544
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.42 E-value=0.074 Score=48.92 Aligned_cols=222 Identities=11% Similarity=0.116 Sum_probs=142.0
Q ss_pred CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784 230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309 (501)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
.+..|.|-|+..+.. .....-.-. +.-.+| ..+.++.-. ...+.++|+++.+.+... .....+
T Consensus 46 ~~~~vvIiDl~~~~~-----~~rrpi~Ad----sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~------~~~e~V 108 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDV 108 (494)
T ss_dssp TCCEEEEEETTSTTS-----CEEEECCCS----EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEE------ECSSCC
T ss_pred CCCeEEEEECCCCCc-----ceecccccc----eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcce------ecCCCc
Confidence 344789999988664 222221112 234566 445565554 688999999998654432 222233
Q ss_pred eeee-cCCCeEEEEeCCcEEEEEcCC-CceEeeeccC----CCcEEEEEEcCCCcEEEEEc----C---Cc-EEEEecCC
Q 010784 310 VDMK-CHESMLYIASGSSVVTIDLRT-MQKVMTPAIC----KPILHSFSIMPSKSLICTGG----I---GK-AMTWDIRR 375 (501)
Q Consensus 310 ~~~~-~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~----~---d~-i~iwd~~~ 375 (501)
.-.. .+++.+.++++..|+-|++.. ..+.+.+..| ...|.....+++.++++..+ + .| +.+|....
T Consensus 109 vfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 109 TFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp CEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred eEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 3333 467778888999999999974 3455555554 46788888999998877554 2 24 88898886
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCC---CcEEEEeCCCc-cccccc-----cc-CCCCCCCcce
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDD---LRINIWETDTG-MLANSL-----LC-NYPEEADIST 441 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~d---g~i~iwd~~~~-~~~~~~-----~~-~~~~~~~~~v 441 (501)
.. .+.+++|......+....+ .+++-+... ++++|-++... ..-..+ .. ..+.....--
T Consensus 189 ~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 189 KV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp CC-------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred cc-------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 54 3778899887777766543 555554332 78999998643 111111 00 1112223344
Q ss_pred eeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784 442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
.++..|+....+..-+ .-|.|+++|+.++...+.
T Consensus 262 vamqvs~kygviyviT--K~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 262 VAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred eEEEecccCCEEEEEe--cCceEEEEecccceeeee
Confidence 5678888888888777 569999999998886544
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.34 E-value=0.066 Score=48.04 Aligned_cols=201 Identities=7% Similarity=0.074 Sum_probs=111.9
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec---CCe---EEEEEe-C--CCeEEEEECC
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH---KSF---LLVTIS-K--DSKVRVWDTS 289 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~---~l~s~s-~--dg~v~vwd~~ 289 (501)
++...+++.....+-+.+||+ .++ .++.+.. +.+..+.+-|. ++. ++++.. . +++|.+|++.
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGK------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSC------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCc------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 345566777778889999999 555 3555543 55666666652 111 223333 3 5789999774
Q ss_pred --CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE--cCC-Cc-EEEEE
Q 010784 290 --TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI--MPS-KS-LICTG 363 (501)
Q Consensus 290 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~--~~~-~~-~l~~~ 363 (501)
+++ +.... ... .. +......++.+++ +|. +. ++++.
T Consensus 108 p~~~~-l~~i~--------~~~--------------------------~p---v~t~~~~pyGlcly~~~~~g~~yafV~ 149 (355)
T 3amr_A 108 GKNGT-LQSMT--------DPD--------------------------HP---IATAINEVYGFTLYHSQKTGKYYAMVT 149 (355)
T ss_dssp TTTCC-EEECS--------CTT--------------------------SC---EECCCSSCCCEEEEECTTTCCEEEEEE
T ss_pred CCCCc-eeecc--------ccc--------------------------cC---cCCCCCCeeEEEEEecCCCCcEEEEEE
Confidence 321 11000 000 00 0000134455666 664 43 55566
Q ss_pred cCCc-EEEEecCC---CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC-----CcccccccccCC
Q 010784 364 GIGK-AMTWDIRR---SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-----TGMLANSLLCNY 433 (501)
Q Consensus 364 ~~d~-i~iwd~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-----~~~~~~~~~~~~ 433 (501)
..++ +..|++.. ++.. .+.+.++.. .+.+..+..++. ..|..+-.+.-|..++.+ +++.+..+..
T Consensus 150 ~k~G~~~q~~l~~~~~g~~~--~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-- 224 (355)
T 3amr_A 150 GKEGEFEQYELKADKNGYIS--GKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-- 224 (355)
T ss_dssp CSSSEEEEEEEEECTTSCEE--EEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--
T ss_pred CCCCeEEEEEEEeCCCCccc--ceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--
Confidence 6556 88888843 2111 344566654 456888889887 444444577666666644 2344444421
Q ss_pred CCCCCcceeeeEe--ecccc-EEEEeecCCCceEEEeeccCCc
Q 010784 434 PEEADISTGCSAM--AVSGC-RIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 434 ~~~~~~~v~~~~~--s~~g~-~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..-...+..|++ .++|+ +|++++. .+..+.+|+.....
T Consensus 225 -g~l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~~~~ 265 (355)
T 3amr_A 225 -RHLTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQGKN 265 (355)
T ss_dssp -SSBCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTTC
T ss_pred -CccccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECCCCC
Confidence 112335778887 56666 7777765 56899999986433
No 306
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.21 E-value=0.092 Score=46.89 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=110.1
Q ss_pred CCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC----C-----CeEEEEE
Q 010784 221 SGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK----D-----SKVRVWD 287 (501)
Q Consensus 221 ~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~----d-----g~v~vwd 287 (501)
++.+++.|+.+ ..+.++|..+..- ..+..+...... .++... ++.+++.|+. + ..+.+||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW----LRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE----eECCCCCccccc-ceEEEE--CCEEEEECCCcCCCCCCeecceEEEEC
Confidence 45666666632 3578888776542 111111111111 122222 5667777765 2 3588899
Q ss_pred CCCCccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCc
Q 010784 288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKS 358 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~ 358 (501)
+.+.+..... ..........+...++.+++..| ..+.+||+.+.+-... +......-..+.+ +++
T Consensus 97 ~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 97 PMTNQWSPCA----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp TTTTEEEECC----CCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCCeEeECC----CCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 8876542211 11111111222223455555543 2688899887654322 1111111122222 677
Q ss_pred EEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccccc
Q 010784 359 LICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLAN 427 (501)
Q Consensus 359 ~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~ 427 (501)
+++.|+.+ . +.+||+.+.+-. .+..+....... +++...+++++.|+.+ ..+.+||+.+.+-..
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWR----MITAMNTIRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEE----ECCCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEe----eCCCCCCccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 77777632 3 889998765421 111111111112 2233345666666554 468999988754322
Q ss_pred ccccCCCCCCCcceeeeEeeccccEEEEeecCC---CceEEEeeccCCc
Q 010784 428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGE---PGLLQFRDFSNAT 473 (501)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~---~g~i~~w~~~~~~ 473 (501)
.-.. +. ..... + +..-++++++.|+.+. ...+.+||.....
T Consensus 246 ~~~~--p~-~r~~~-~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 246 VAPM--KH-RRSAL-G-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCCC--SS-CCBSC-E-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCC--CC-Cccce-E-EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1110 01 01111 1 2223778888887542 2346677766543
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.21 E-value=0.022 Score=52.24 Aligned_cols=156 Identities=8% Similarity=-0.012 Sum_probs=94.2
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccC----CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCC----C
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC----KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKP----Q 383 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~----~ 383 (501)
+..++..++++.++.|+.-++.....-+.+... -..+..+..+|+|++||..+...|.|-.+..+...... .
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 344455667777778887777644333333322 22578899999999999999888999988844322000 0
Q ss_pred Cc--ccccC------cccCeEEEEecCC----eEEEEecCCCcEEEEeCCCccccc-ccccC----CCCCCCcceeeeEe
Q 010784 384 PM--AELDG------HVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLAN-SLLCN----YPEEADISTGCSAM 446 (501)
Q Consensus 384 ~~--~~~~~------h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~-~~~~~----~~~~~~~~v~~~~~ 446 (501)
.+ ..+.- ...+|..+.|+|- ..+++-..|+.|++||+....... .+... ........|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 00 11111 2467999999996 455555799999999998522111 22100 01122356788899
Q ss_pred eccccEEEEeecCCCceEEEe
Q 010784 447 AVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 447 s~~g~~l~s~~~d~~g~i~~w 467 (501)
..+|=.|...+..+.|-|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 887765555332144666544
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.20 E-value=0.029 Score=49.86 Aligned_cols=172 Identities=11% Similarity=0.035 Sum_probs=102.4
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
.....-.+++|.+.++.++++.-..++|..||...+..... .. +..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------~~~--------------------------- 55 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------DGA--------------------------- 55 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------TTT---------------------------
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------CCc---------------------------
Confidence 33334456788865565555555789999999875432110 00 000
Q ss_pred ceEeeecc-CCCcEEEEEE---cCCCcEEEEEcC-------------Cc-EEEEecC---CCCCCCCCCCcccccCc---
Q 010784 336 QKVMTPAI-CKPILHSFSI---MPSKSLICTGGI-------------GK-AMTWDIR---RSQDAVKPQPMAELDGH--- 391 (501)
Q Consensus 336 ~~~~~~~~-~~~~v~~v~~---~~~~~~l~~~~~-------------d~-i~iwd~~---~~~~~~~~~~~~~~~~h--- 391 (501)
...+ ....+..+.+ .|+++++++... +. +..||+. +++.+ ....+...
T Consensus 56 ----s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~ 127 (334)
T 2p9w_A 56 ----SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDE 127 (334)
T ss_dssp ----CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHH
T ss_pred ----cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCcccccc
Confidence 0000 0113478888 688888775431 45 9999999 66543 11111111
Q ss_pred --------ccCeEEEEecCC-eEEEEecCC-CcEEEEeCCCcccccccccCC-CCCCCcceeeeEeeccccEEEEeecCC
Q 010784 392 --------VGSVTQLHMDPY-KIVTGGRDD-LRINIWETDTGMLANSLLCNY-PEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 392 --------~~~v~~l~~~~~-~~l~~gs~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
....+.++.+++ +..++++.- +.|...+.. |+.+..+.... ........+.++++|+|+.|++.. .
T Consensus 128 ~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~--~ 204 (334)
T 2p9w_A 128 FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG--G 204 (334)
T ss_dssp HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES--S
T ss_pred ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc--C
Confidence 134789999999 888877777 777777765 33333321111 111233477999999999999887 4
Q ss_pred CceEEEeeccCC
Q 010784 461 PGLLQFRDFSNA 472 (501)
Q Consensus 461 ~g~i~~w~~~~~ 472 (501)
.|.|..+|+...
T Consensus 205 ~g~L~~fD~~~p 216 (334)
T 2p9w_A 205 PRALTAFDVSKP 216 (334)
T ss_dssp SSSEEEEECSSS
T ss_pred CCeEEEEcCCCC
Confidence 699999997743
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.14 E-value=0.12 Score=46.03 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=111.7
Q ss_pred CCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCCCcccc
Q 010784 222 GKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVR 295 (501)
Q Consensus 222 ~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~ 295 (501)
+.+++.|+. ...+.+||..+..- ..+..+......- ++... ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSW----TDIRCPFEKRRDA-ACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEE----EECCCCSCCCBSC-EEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCE----ecCCCCCccccee-EEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 345556654 35688888877542 1122222111111 22222 66778888755 668889988875422
Q ss_pred ceecccceecCCCceeeecCCCeEEEEeCC--------cEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcC
Q 010784 296 SSCCVGMTSVPGVPVDMKCHESMLYIASGS--------SVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
... ......-..+...++.+++..|. .+.+||..+.+-... +......-..+.+ ++++++.|+.
T Consensus 85 ~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 158 (306)
T 3ii7_A 85 KLG----PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGS 158 (306)
T ss_dssp EEC----CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred CCC----CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCC
Confidence 111 11111112222334555555441 588899887654322 1111111122222 6777777762
Q ss_pred ---------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccc--ccc
Q 010784 366 ---------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGML--ANS 428 (501)
Q Consensus 366 ---------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~--~~~ 428 (501)
-. +.+||+.+.+- ..+..+...... .+++...+++++.|+.+ ..+.+||+.+.+- +..
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKN-HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP 233 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBS-CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC
T ss_pred CCCCCcccccceEEEeCCCCCeE----EECCCccchhhc-ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC
Confidence 23 88999887542 111111111111 12333345666665443 3588999887542 222
Q ss_pred cccCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784 429 LLCNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT 473 (501)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~ 473 (501)
+. . .......+. -++++++.|+.+.. ..+.+||.....
T Consensus 234 ~p----~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 MP----W-KGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CS----C-CBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CC----C-CccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 21 1 111112222 27788888875422 457777776654
No 310
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.04 E-value=0.00031 Score=69.97 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=29.6
Q ss_pred cccccccHHHHHHHHhcCC-hhhhHHHHhhChhHHHH
Q 010784 18 TAIADLNEDAVAHCALNLS-LQDISNMAMSCKLFKHV 53 (501)
Q Consensus 18 ~~~~~Lp~e~~~~i~~~L~-~~~l~~~~~vc~~~~~~ 53 (501)
+.+..||+|++.+||+||+ .+|+.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 6678899999999999999 99999999999999999
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.02 E-value=0.1 Score=46.38 Aligned_cols=229 Identities=12% Similarity=0.116 Sum_probs=109.1
Q ss_pred CCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCc
Q 010784 222 GKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSS 292 (501)
Q Consensus 222 ~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~ 292 (501)
+.+++.|+.+ ..+.++|+.+..- ..+..+...... .++... ++.+++.|+.+ ..+.+||..+.+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW----HQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE----EEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE----eEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence 4456666643 3577888876532 112112211111 122222 66778887755 358889988765
Q ss_pred cccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
..... ..........+...++.+++..| ..+.+||+.+.+-... +.........+.+ ++++++.|
T Consensus 89 W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 162 (302)
T 2xn4_A 89 WTSVA----NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVG 162 (302)
T ss_dssp EEEEC----CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred eeeCC----CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEe
Confidence 42211 11111111222223445555443 2578888877654322 2111111122222 67777777
Q ss_pred cC-------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcccccccc
Q 010784 364 GI-------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLANSLL 430 (501)
Q Consensus 364 ~~-------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~~ 430 (501)
+. -. +.+||+.+.+-. .+..+...... .+++...+++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWT----YIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCCCCCCccccEEEEEeCCCCcEE----ECCCCcccccc-ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence 62 23 889998875321 11111111111 12333345666665553 368999998754322111
Q ss_pred cCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784 431 CNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT 473 (501)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~ 473 (501)
.. . ......+...++++++.|+.+.. ..+.+||.....
T Consensus 238 ~~--~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 238 MN--M---CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CS--S---CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CC--C---ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 00 1 11111122337788888875421 347777776544
No 312
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.02 E-value=0.37 Score=49.21 Aligned_cols=307 Identities=10% Similarity=-0.027 Sum_probs=153.7
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
..|++|.-+.+|.+.+. ..+|. ..||-.. .+..... ......|.++.... ++ .|..|..+|
T Consensus 22 n~V~~I~qD~~G~lWig-T~~GL-~ryDG~~-~~~~~~~~~~~~~~i~~i~~d~-------------~g-~lWigT~~G- 83 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIG-SNKGL-FSYDGYS-TQQHFTYGENNNTRIYCGVIID-------------NT-YLYMGTDNG- 83 (758)
T ss_dssp CCEEEEEECTTSCEEEE-ESSCE-EEECSSC-EEECSCTTSTTSSCEEEEEEET-------------TT-EEEEEETTE-
T ss_pred ceEEEEEECCCCCEEEE-ECCCc-cccCCCc-eEEEEccCCCCCceEEEEEEcC-------------CC-cEEEEeCCC-
Confidence 34899999988855542 24554 4455321 1111100 11234688877655 44 556666666
Q ss_pred eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-----cCCCCcee
Q 010784 190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-----YGHEKPIK 262 (501)
Q Consensus 190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~ 262 (501)
+..|| +.............|.++.. .++ .|..|+.+ -+..+|..++.. ..+ ......|.
T Consensus 84 l~~yd~~~~~f~~~~~~~~~~i~~i~~-----~~g-~lWigt~~-Gl~~~~~~~~~~-------~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 84 ILVYNYRADRYEQPETDFPTDVRTMAL-----QGD-TLWLGALN-GLYTYQLQSRKL-------TSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EEEEETTTTEECCCSCCCCSCEEEEEE-----ETT-EEEEEETT-EEEEEETTTCCE-------EEECHHHHCCSCSCEE
T ss_pred eEEEeCCCCEEECcccCCCceEEEEEe-----cCC-cEEEEcCC-cceeEeCCCCeE-------EEeccCCCCcCCCeEE
Confidence 67888 32221111112335776653 244 45556655 577888766432 111 11234577
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEeCCcEEEEEcCCCceEee
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
++.... ++. |..|+.+ -|..++..+++................+.++..+. ..+++++.+.+..+|..+++....
T Consensus 150 ~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~ 226 (758)
T 3ott_A 150 SIIRTK-DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQT 226 (758)
T ss_dssp EEEECT-TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEEcC-CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEec
Confidence 776653 444 4445654 47788877654311100000000111234444433 446787766788888877654322
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCC-CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAV-KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw 418 (501)
.......|.++....+|.+.+.. .+++.+++..+.+... .........-....|.++..+.+ .+.++. ..| +.++
T Consensus 227 ~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~ 303 (758)
T 3ott_A 227 EAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLS 303 (758)
T ss_dssp EEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEE
T ss_pred cCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccc
Confidence 11123458888888888776654 5578889877643210 00000000112346899988887 666553 556 5554
Q ss_pred eCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
.....-................|.++.-..+|.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG 340 (758)
T 3ott_A 304 RYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG 340 (758)
T ss_dssp CCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE
T ss_pred ccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe
Confidence 3321110000000000112345777777777776554
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.01 E-value=0.32 Score=48.26 Aligned_cols=307 Identities=10% Similarity=-0.004 Sum_probs=168.7
Q ss_pred CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCCC
Q 010784 112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCDH 188 (501)
Q Consensus 112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg 188 (501)
.+..|+++. .+.+..+-...+.|.+.++... ....+ ...-.....|++.|. .|.++++- +..+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l~~~~l~~P~~iavdp~------------~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--HRQVLVWKDLDSPRALALDPA------------EGFMYWTEWGGKP 146 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTST--TCEEEECSSCCCEEEEEEETT------------TTEEEEEECSSSC
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCC--cEEEEEeCCCCCcccEEEccC------------CCeEEEeCCCCCC
Confidence 478899985 4566666667788999888743 22333 233455789999883 34454543 2245
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.|...+ .+.....+...-.....|++. +++..|+.+ ...+.|...|++.... ..+.........+++
T Consensus 147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD----~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~~~~l~~P~glav 215 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPNVGRANGLTID----YAKRRLYWTDLDTNLIESSNMLGLNR-------EVIADDLPHPFGLTQ 215 (628)
T ss_dssp EEEEEETTSCSCEEEECSCSSEEEEEEE----TTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECCSCEEEEEE
T ss_pred EEEEEeCCCCceEEEECCCCCcceEEEc----cccCEEEEEECCCCEEEEEcCCCCce-------EEeeccCCCceEEEE
Confidence 666666 554444443344566788885 555555554 4567899999876442 222222333457777
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceec----------cccee-----------cCCCceeeecC----------
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC----------VGMTS-----------VPGVPVDMKCH---------- 315 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~---------- 315 (501)
. .+.++++-...+.|...|..+++....... .+... ....-+++...
T Consensus 216 ~--~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~ 293 (628)
T 4a0p_A 216 Y--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA 293 (628)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECST
T ss_pred E--CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCC
Confidence 6 456666666688899888766643221110 00000 00000111100
Q ss_pred --------------CCeEEEEeCCcEEEEEcCCCce-Eeeecc-CCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCC
Q 010784 316 --------------ESMLYIASGSSVVTIDLRTMQK-VMTPAI-CKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQ 377 (501)
Q Consensus 316 --------------~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~ 377 (501)
...++++....|+-..+..... ...+.. .-..+..++|.+.+..|+.+. ..+ |+.+++....
T Consensus 294 g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~ 373 (628)
T 4a0p_A 294 HYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ 373 (628)
T ss_dssp TCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC
Confidence 1122333333444444432211 111111 124578899998655554444 444 8888776432
Q ss_pred CCCCCCCcccccC------cccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-
Q 010784 378 DAVKPQPMAELDG------HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV- 448 (501)
Q Consensus 378 ~~~~~~~~~~~~~------h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 448 (501)
.. ..+.. ....+..|+++.. .++.+-+..+.|.+.++. |+....+.. .......++++.|
T Consensus 374 ~~------~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~----~~l~~Pr~iavdp~ 442 (628)
T 4a0p_A 374 GF------TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLK----GEQDRPRAVVVNPE 442 (628)
T ss_dssp CE------EEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEE----CTTCCEEEEEEETT
T ss_pred ce------EEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEe----CCCCceeeEEEecC
Confidence 11 11211 1346788999875 677777788999999985 555544421 1234578899999
Q ss_pred cccEEEEe
Q 010784 449 SGCRIVTA 456 (501)
Q Consensus 449 ~g~~l~s~ 456 (501)
.|.++++-
T Consensus 443 ~g~ly~tD 450 (628)
T 4a0p_A 443 KGYMYFTN 450 (628)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEee
Confidence 55555553
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.96 E-value=0.19 Score=44.73 Aligned_cols=186 Identities=12% Similarity=0.052 Sum_probs=93.1
Q ss_pred CCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCC
Q 010784 221 SGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTST 290 (501)
Q Consensus 221 ~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~ 290 (501)
++.+++.|+.+ ..+.+||..+..- ..+..+......- ++... ++.+++.|+.+ ..+.+||..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTPRDSL-AACAA--EGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSCCBSC-EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCccccce-eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 56677777755 5678888877542 1222222111111 22222 66777887765 4588999888
Q ss_pred CccccceecccceecCCCceeeecCCCeEEEEeC-----------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCC
Q 010784 291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-----------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSK 357 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~ 357 (501)
.+.... ...........+...++.+++..| ..+.+||+.+.+-... +......-..+.+ ++
T Consensus 128 ~~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 201 (306)
T 3ii7_A 128 ESWHTK----PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KD 201 (306)
T ss_dssp TEEEEE----CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred CceEeC----CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CC
Confidence 754221 111111111122223445555543 2478899887654322 1111111122222 67
Q ss_pred cEEEEEcC------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcc
Q 010784 358 SLICTGGI------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGM 424 (501)
Q Consensus 358 ~~l~~~~~------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~ 424 (501)
++++.|+. +.+.+||+.+.+- ..+..+.........+ ...+++++.|+.+ ..+.+||+.+.+
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLNEW----KMVSPMPWKGVTVKCA-AVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTTEE----EECCCCSCCBSCCEEE-EETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCCcE----EECCCCCCCccceeEE-EECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 77777763 2288999887541 1112222111122222 3344666666543 468888887643
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.96 E-value=0.18 Score=44.51 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=145.7
Q ss_pred eEEeeCCcEEEe--ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 115 HILLDNNDIFST--QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 115 ~~~~~~~~~~~~--~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
.+.+..|.-..+ ..+....+.|-|+..+....+.-..-... -.+| ..+.+|.-. ..++.|
T Consensus 30 ~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~AdsA----IMnP-------------~~~ViALra-g~~LQi 91 (365)
T 2xzh_A 30 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSA----IMNP-------------ASKVIALKA-GKTLQI 91 (365)
T ss_dssp TEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSEE----EECS-------------SSSEEEEEE-TTEEEE
T ss_pred eeeeecCceEEEEecCCCCCEEEEEECCCCCCcccccccccee----eeCC-------------CccEEEEec-CCeEEE
Confidence 334444433333 23445578888988764543332222222 2366 566666655 678999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC----CceeEEEE
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE----KPIKLMSV 266 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~l~~ 266 (501)
+| +...++.+.- ...|.-=.|- +.+.|+-... ..|.-|++..... +...+..|. ..|..-..
T Consensus 92 FnletK~klks~~~-~e~VvfWkWi-----s~~~L~lVT~-taVyHWs~~~~s~-----P~kvFdR~~~L~~~QIInY~~ 159 (365)
T 2xzh_A 92 FNIEMKSKMKAHTM-TDDVTFWKWI-----SLNTVALVTD-NAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRT 159 (365)
T ss_dssp EETTTTEEEEEEEC-SSCEEEEEEC-----SSSEEEEEES-SEEEEEESSTTCC-----CEEEEECCGGGTTCEEEEEEE
T ss_pred echHHhhhhcceec-CCccEEEEec-----CCCeEEEEcC-CcEEEEcccCCCC-----CceeeecchhcccceEEEEEE
Confidence 99 5555666553 4577777784 4456655543 5899999986443 444444432 34555555
Q ss_pred eecCCeEEE-EEe------CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 267 AGHKSFLLV-TIS------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 267 ~~~~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
++ +.+.++ +|- -.|.+.+|..+.+. -+
T Consensus 160 d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---------------------------------------------sQ 193 (365)
T 2xzh_A 160 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------------------------------------------SQ 193 (365)
T ss_dssp CT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE---------------------------------------------EE
T ss_pred CC-CCCEEEEEeEeccCCccceeEEEEeecccc---------------------------------------------cc
Confidence 55 344433 332 12455566555432 12
Q ss_pred eeccCCCcEEEEEEcCC---CcEEEEEc---CCc-EEEEecCCC---CCCCCCCCccccc---CcccCeEEEEecCC-eE
Q 010784 340 TPAICKPILHSFSIMPS---KSLICTGG---IGK-AMTWDIRRS---QDAVKPQPMAELD---GHVGSVTQLHMDPY-KI 405 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~---~~~l~~~~---~d~-i~iwd~~~~---~~~~~~~~~~~~~---~h~~~v~~l~~~~~-~~ 405 (501)
.+.+|......+.+..+ ..+++-+. .++ ++|-++... ...+..+.+..+- .-.+-.-++..++. .+
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE
Confidence 23333333222222111 11233222 234 888888543 1111111111111 11344567888887 55
Q ss_pred EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+..-+.-|.|++||++++.++..-+. ....|...+-+....-++... .+|.|.--.++..
T Consensus 274 iyviTK~G~ihlyDleTgt~i~~nrI-----S~d~iF~ta~~~~~~Gi~~Vn--r~GqVl~v~v~~~ 333 (365)
T 2xzh_A 274 VFLITKYGYIHLYDLETGTCIYMNRI-----SGETIFVTAPHEATAGIIGVN--RKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEEGGGTEEEEEE--TTCEEEEEEECTT
T ss_pred EEEEeCCcEEEEEEcccCcEEEEecc-----CCCceEEecccCCCCcEEEEc--CCCEEEEEEECcc
Confidence 55556899999999999999877632 234555555544444444444 5577666655543
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.90 E-value=0.19 Score=44.65 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred cCcEEEEeeCCC-----ceEEec-CCceee---eccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEeccCC
Q 010784 177 TENVLVTSSCDH-----SIRLWW-KGSCQR---CFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSLSSS 242 (501)
Q Consensus 177 ~~~~l~s~~~dg-----~i~vwd-~~~~~~---~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~~~~ 242 (501)
++.+++.|+.++ .+.+|| ....-. .+....... +++. -++.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-----~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-----LNGLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-----ETTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-----ECCEEEEEcCCCCCccCceEEEEeCCCC
Confidence 467888887653 466777 222111 122111112 2222 2566777777553 4677887765
Q ss_pred CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-------CeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784 243 GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH 315 (501)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (501)
.- ..+..+...... .++... ++.+++.|+.+ ..+.+||+.+.+..... ..........+...
T Consensus 135 ~W----~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~ 203 (302)
T 2xn4_A 135 EW----FHVAPMNTRRSS-VGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA----EMSTRRSGAGVGVL 203 (302)
T ss_dssp EE----EEECCCSSCCBS-CEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEE
T ss_pred eE----eecCCCCCcccC-ceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC----CCccccccccEEEE
Confidence 42 122222211111 122222 56677777643 35889999877543211 11111111222233
Q ss_pred CCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCCC
Q 010784 316 ESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRSQ 377 (501)
Q Consensus 316 ~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~~ 377 (501)
++.+++..| ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ . +.+||+.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 455555543 2688999887654322 1111111122222 67777777632 2 7888887653
No 317
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.86 E-value=0.23 Score=44.19 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=96.1
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-Cceee-eccC----CCC--ceEEEEeeecCCCCCCEE
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-GSCQR-CFKG----HNG--PVSTLSDKLLGDGSGKIL 225 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~~~~~-~~~~----h~~--~v~~l~~s~~~~~~~~~l 225 (501)
--.+++|.+. ++.++++.-..|+|..|| . +.... .+.+ ... .+..|.|. ..++++.++
T Consensus 14 yPE~~~wd~~------------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~-~~D~~grL~ 80 (334)
T 2p9w_A 14 TPEDTIYDRT------------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLL-THDNSKRLF 80 (334)
T ss_dssp CCSCEEEETT------------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEES-SSSSCCEEE
T ss_pred CCcCccCcCC------------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEe-ccCCCCcEE
Confidence 3456778762 355555555899999999 3 32222 2222 111 34677771 012567777
Q ss_pred EEee-------------CCCcEEEEecc---CCCccccccceeeccC-----------CCCceeEEEEeecCCeEEEEEe
Q 010784 226 ASGG-------------EDATVRLWSLS---SSGKRGQQALKATLYG-----------HEKPIKLMSVAGHKSFLLVTIS 278 (501)
Q Consensus 226 ~sg~-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~~~~~~~l~s~s 278 (501)
++.. .+..|..+|+. +++.. ....+.. -......+++.+ +++..++++
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s 155 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFA 155 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCccccccccccccccccCCceeEECC-CCCEEEeCC
Confidence 7543 15779999998 55430 1111111 113477888886 788888888
Q ss_pred CC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 279 KD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 279 ~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
.. +.|...+..... +..|.+... ........+.|+++|+|
T Consensus 156 ~~~~~I~rV~pdG~~----------------------------------~~~~~~~~~-----~~~~~~G~nGIv~~pdg 196 (334)
T 2p9w_A 156 LGMPAIARVSADGKT----------------------------------VSTFAWESG-----NGGQRPGYSGITFDPHS 196 (334)
T ss_dssp ESSCEEEEECTTSCC----------------------------------EEEEEECCC-----CSSSCCSCSEEEEETTT
T ss_pred CCCCeEEEEeCCCCE----------------------------------EeeeeecCC-----CcccccCcceEEEeCCC
Confidence 77 777766655431 112222111 01112346789999999
Q ss_pred cEEEEEcCCc-EEEEecCC
Q 010784 358 SLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 358 ~~l~~~~~d~-i~iwd~~~ 375 (501)
++|++...++ |..+|+..
T Consensus 197 ~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 197 NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TEEEEESSSSSEEEEECSS
T ss_pred CEEEEEcCCCeEEEEcCCC
Confidence 8888776677 99999884
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.77 E-value=0.26 Score=43.65 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=90.8
Q ss_pred cCcEEEEeeCC-----CceEEec--CCc-----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEec
Q 010784 177 TENVLVTSSCD-----HSIRLWW--KGS-----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSL 239 (501)
Q Consensus 177 ~~~~l~s~~~d-----g~i~vwd--~~~-----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~ 239 (501)
++.+++.|+.+ ..+.+|| +.. .+..+......- +++. .++.+++.|+.++ .+.+||+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-----~~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-----LGDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-----ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-----ECCEEEEEcccCCCcccceEEEEcC
Confidence 56788888765 3577777 222 222222111122 2222 2566777776543 5788888
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeec
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC 314 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (501)
.+..- ..+..+......- ++... ++.+++.|+.+ ..+.+||+.+.+.... ...........+..
T Consensus 136 ~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~ 204 (301)
T 2vpj_A 136 NIDQW----SMLGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV----TPMATKRSGAGVAL 204 (301)
T ss_dssp TTTEE----EEEEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE----CCCSSCCBSCEEEE
T ss_pred CCCeE----EECCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC----CCCCcccccceEEE
Confidence 76542 2222222111111 22222 56777777754 4588999887754322 11111111122223
Q ss_pred CCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCC
Q 010784 315 HESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRS 376 (501)
Q Consensus 315 ~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~ 376 (501)
.++.+++..| ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ . +.+||+.+.
T Consensus 205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 3455555543 2688999987654322 1111111222222 67777777633 3 778888764
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.70 E-value=0.31 Score=43.54 Aligned_cols=211 Identities=10% Similarity=0.049 Sum_probs=98.8
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----C------CeEEEEECCCCc
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----D------SKVRVWDTSTSS 292 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----d------g~v~vwd~~~~~ 292 (501)
+++.|+ ..+.+||..++.- .. ..+.........-... .++.+++.|+. . ..+..||..+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W----~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANEC----YC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEE----EE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeE----ec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 455555 5688999987652 11 2222111122222222 26677777773 1 127788988765
Q ss_pred cccceecccceecCCCceeeecCCCeEEEEeC----------CcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCCcEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----------SSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l 360 (501)
..... .......-..+....+.+++..| ..+.+||..+.+-.. .+......-..+. -+++++
T Consensus 79 W~~~~----~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 152 (315)
T 4asc_A 79 WLGMP----PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY 152 (315)
T ss_dssp EEECC----CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred EEECC----CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence 42211 11111111122233455555544 158889988764322 1111111112222 366777
Q ss_pred EEEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC-----cEEEEeCCCcccccc
Q 010784 361 CTGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL-----RINIWETDTGMLANS 428 (501)
Q Consensus 361 ~~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg-----~i~iwd~~~~~~~~~ 428 (501)
+.|+. -. +.+||..+.+- ..+..+...... .+++...+++++.|+.++ .+.+||+.+.+-...
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSL-FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred EEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhc-eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 77764 13 88899887531 111122111111 122333445555554443 588899877543222
Q ss_pred cccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 429 LLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
-.. . .......+..-++++++.|+.
T Consensus 228 ~~~---p--~~r~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 228 EAF---P--QERSSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp CCC---S--SCCBSCEEEEETTEEEEEEEE
T ss_pred CCC---C--CcccceeEEEECCEEEEECCc
Confidence 110 1 111111122336778888775
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.67 E-value=0.37 Score=43.93 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=37.5
Q ss_pred cCeEEEEecCCeEEEEecCCCcEEEEeCCCccc------ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 393 GSVTQLHMDPYKIVTGGRDDLRINIWETDTGML------ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 393 ~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
.....+++....++++.-..+.|...++..... ...+. .....+..+++.|||.+.++..
T Consensus 268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECCCCcEEEEEe
Confidence 346677775456666666777888887764431 11221 1124678889999997776654
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.52 E-value=0.25 Score=45.12 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=35.2
Q ss_pred CCCEEEEeeCC-CcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeC-C---------CeEEEEEC
Q 010784 221 SGKILASGGED-ATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISK-D---------SKVRVWDT 288 (501)
Q Consensus 221 ~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~-d---------g~v~vwd~ 288 (501)
++.+++.|+.+ ..+.++|+.+... .+..+..+. ..... .+++.. ++.+++.|+. + ..+.+||+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~--~W~~~~~~p~~~R~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDK--KWTALAAFPGGPRDQ-ATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSC--CEEECCCCTTCCCBS-CEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCeEEEEccccCCC--CeeECCCCCCCcCcc-ceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence 45566666543 4677888764211 122222222 11111 122232 5667777765 2 45889999
Q ss_pred CCCcc
Q 010784 289 STSSA 293 (501)
Q Consensus 289 ~~~~~ 293 (501)
.+.+.
T Consensus 94 ~~~~W 98 (357)
T 2uvk_A 94 KTNSW 98 (357)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 88754
No 322
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.52 E-value=0.42 Score=42.74 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=52.2
Q ss_pred CCCEEEEeeCC-------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC------CCeEEEEE
Q 010784 221 SGKILASGGED-------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK------DSKVRVWD 287 (501)
Q Consensus 221 ~~~~l~sg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd 287 (501)
++.+++.|+.+ ..+.+||..+..- ..+..+......- ++... ++.+++.|+. -..+.+||
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGH-NVISH--NGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESC-EEEEE--TTEEEEECCEESSSCBCCCEEEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCccccc-EEEEE--CCEEEEEcCCCCCCCccceEEEEc
Confidence 56677777754 2477788776542 1111111111111 12222 6677777764 23588999
Q ss_pred CCCCccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCce
Q 010784 288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQK 337 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~ 337 (501)
+.+.+..... ..........+...++.+++..| ..+.+||+.+.+-
T Consensus 182 ~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 182 PKKGDWKDLA----PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp TTTTEEEEEC----CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CCCCEEEECC----CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 9887543211 11111111222233445555543 2577888877653
No 323
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.40 E-value=0.0011 Score=65.84 Aligned_cols=33 Identities=9% Similarity=0.295 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHH
Q 010784 21 ADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHV 53 (501)
Q Consensus 21 ~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~ 53 (501)
..||+|++.+||+|| +.+|+.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 379999999999999 899999999999999998
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.40 E-value=0.18 Score=45.81 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=41.3
Q ss_pred CcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCC-CcEEEEeC
Q 010784 346 PILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDD-LRINIWET 420 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~d-g~i~iwd~ 420 (501)
...+.++|+||++.++.+. ..+ |..|++.....+ .....+. ..+..-.+++++ + .+.+++..+ +.|..|+.
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l---~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL---TPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE---EEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE---ecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 4568999999998777665 344 999998742211 0111221 134566778887 5 666654333 33444443
No 325
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.71 Score=43.88 Aligned_cols=243 Identities=10% Similarity=0.045 Sum_probs=128.6
Q ss_pred CceEEeeCC--cEEEeecCCeeeEEEEecccccccceeccc---CCcceeEEEe-------eccCcCcccccCCCCcCcE
Q 010784 113 HDHILLDNN--DIFSTQGSSIQNIKIDNFLSESYYRATLSD---HKARITCMRL-------FPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 113 i~~~~~~~~--~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~---h~~~V~~~~~-------~~~~~~~~~~~~~~~~~~~ 180 (501)
...|+++|. +.++++....+.|++.|.+.+ .+...+.. .......|+| ++ +++.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-------------~G~~ 206 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYAD-------------EAEY 206 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBC-------------TTCE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCC-------------CCCE
Confidence 568999973 555565555678888888753 33332222 2235888999 88 7775
Q ss_pred EEEeeCCC-c------eEEec--C-Ccee-----eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEecc----
Q 010784 181 LVTSSCDH-S------IRLWW--K-GSCQ-----RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLS---- 240 (501)
Q Consensus 181 l~s~~~dg-~------i~vwd--~-~~~~-----~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~---- 240 (501)
|+.+...+ . |.+.+ . +... ..+... .....++++ + ++.++++-..++.|..+|+.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavd----p~~g~LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIH----PINGELYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEEC----TTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEc----CCCCeEEEEECCCCEEEEEecccccc
Confidence 55555443 2 55554 1 2221 122111 123455664 5 55666666778889999997
Q ss_pred ---CCCc-cc---c----ccceeeccCCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCC--Cccccceecccc---e
Q 010784 241 ---SSGK-RG---Q----QALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTST--SSAVRSSCCVGM---T 303 (501)
Q Consensus 241 ---~~~~-~~---~----~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~---~ 303 (501)
++.. .. . ...+... +....-..|+++| +++ ++++-+..+.|+.++... +........... .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEec-CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 4431 00 0 0011111 2233457899998 555 556666778899866532 211000000000 0
Q ss_pred e-cC--------CCce-eeec--------CCCeEEEEeC--CcEEEEEcCCCceEeeeccC-------------------
Q 010784 304 S-VP--------GVPV-DMKC--------HESMLYIASG--SSVVTIDLRTMQKVMTPAIC------------------- 344 (501)
Q Consensus 304 ~-~~--------~~~~-~~~~--------~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~------------------- 344 (501)
. .. ..+. .+.. ....++++.. ..|+.++ .++ .+.++.+.
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~ 437 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDL 437 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCc
Confidence 0 01 1122 1222 2234555543 3777777 344 33333221
Q ss_pred -----CCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCC
Q 010784 345 -----KPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 345 -----~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
-.....|+++++ +.++++=..+. |+.+++.....
T Consensus 438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 023678999996 77666666666 99999886543
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.27 E-value=0.42 Score=42.64 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCCEEEEeeCC--------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-C-----CeEEEE
Q 010784 221 SGKILASGGED--------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-D-----SKVRVW 286 (501)
Q Consensus 221 ~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-d-----g~v~vw 286 (501)
++.+++.|+.+ ..+.+||..+..- ..+..+......- ++... ++.+++.|+. + ..+.+|
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 170 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYGH-TVLSH--MDLVYVIGGKGSDRKCLNKMCVY 170 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCTTSCBCCCEEEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccce-eEEEE--CCEEEEEeCCCCCCcccceEEEE
Confidence 55677777743 3588888877532 1222222111111 22222 6677778776 2 468899
Q ss_pred ECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCceEeee--ccCCCcEEEEEEcCCC
Q 010784 287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQKVMTP--AICKPILHSFSIMPSK 357 (501)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~ 357 (501)
|+.+.+-.... ..........+...++.+++..|. .+.+||+.+.+-...- .........+.+ ++
T Consensus 171 d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 244 (315)
T 4asc_A 171 DPKKFEWKELA----PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VG 244 (315)
T ss_dssp ETTTTEEEECC----CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred eCCCCeEEECC----CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CC
Confidence 98877542211 111111112222334455555431 5888898876443221 111111122222 56
Q ss_pred cEEEEEcC
Q 010784 358 SLICTGGI 365 (501)
Q Consensus 358 ~~l~~~~~ 365 (501)
++++.|+.
T Consensus 245 ~l~v~GG~ 252 (315)
T 4asc_A 245 TLYAIGGF 252 (315)
T ss_dssp EEEEEEEE
T ss_pred EEEEECCc
Confidence 77777663
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.17 E-value=0.64 Score=41.28 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCEEEEeeCC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCC
Q 010784 221 SGKILASGGED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTST 290 (501)
Q Consensus 221 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~ 290 (501)
++.+++.|+.+ ..+.+||..+..- ..+..+......- ++... ++.+++.|+.+ ..+.+||+.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 56677777644 3578888876542 1121222111111 22222 56777777754 4588999887
Q ss_pred CccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEE
Q 010784 291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~ 361 (501)
.+..... ..........+...++.+++..| ..+.+||+.+.+-... +.........+.+ ++++++
T Consensus 194 ~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 267 (308)
T 1zgk_A 194 NEWRMIT----AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYV 267 (308)
T ss_dssp TEEEECC----CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CeEeeCC----CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEE
Confidence 6543211 11111111222233455555543 3688999887654322 1111111122222 677777
Q ss_pred EEcCC-----c-EEEEecCCC
Q 010784 362 TGGIG-----K-AMTWDIRRS 376 (501)
Q Consensus 362 ~~~~d-----~-i~iwd~~~~ 376 (501)
.|+.+ . +.+||+.+.
T Consensus 268 ~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 268 LGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ECCBCSSCBCCEEEEEETTTT
T ss_pred EcCcCCCcccceEEEEcCCCC
Confidence 77632 2 777887764
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.09 E-value=0.9 Score=48.68 Aligned_cols=221 Identities=11% Similarity=0.125 Sum_probs=133.1
Q ss_pred CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784 230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309 (501)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
...+|.|-|+..+.. .....-.-. +.-.+| ..+.++.-+ ..++.|+|+++.+.+... .....+
T Consensus 46 ~~~~vvIidl~~~~~-----~~rrpi~Ad----sAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~------~~~e~V 108 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDV 108 (1630)
T ss_pred CCceEEEEECCCCCC-----cccccccch----hhccCC-CcceEEEec-CCeEEEeehHHhhhhccc------ccCCCc
Confidence 344788999988654 211111112 223455 445555544 688999999987654432 223334
Q ss_pred eeeec-CCCeEEEEeCCcEEEEEcCCC-ceEeeeccC----CCcEEEEEEcCCCcEEEEEc-------CCc-EEEEecCC
Q 010784 310 VDMKC-HESMLYIASGSSVVTIDLRTM-QKVMTPAIC----KPILHSFSIMPSKSLICTGG-------IGK-AMTWDIRR 375 (501)
Q Consensus 310 ~~~~~-~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~-------~d~-i~iwd~~~ 375 (501)
.-..| +++.+.++++..|+.|++... .+.+.+..| ...|..-..+++.++++..+ -.| +.+|....
T Consensus 109 vfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 109 TFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred eEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 44444 567778888899999999743 344444444 56688888889988877544 124 88888876
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecC---CCcEEEEeCCCc-ccccccc-----c-CCCCCCCcce
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRD---DLRINIWETDTG-MLANSLL-----C-NYPEEADIST 441 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~---dg~i~iwd~~~~-~~~~~~~-----~-~~~~~~~~~v 441 (501)
... +.+.||.+....+..... .+++-+.. .+.++|-++... ..-..+. . ..+.....--
T Consensus 189 ~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp 261 (1630)
T 1xi4_A 189 KVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (1630)
T ss_pred ccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence 543 677788776655554322 45443322 378999998543 1111110 0 0111122333
Q ss_pred eeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784 442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
.++..|+....+..-+ .-|.|+++|+.++...+
T Consensus 262 v~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIY 294 (1630)
T ss_pred eEEEeccccCEEEEEe--cCceEEEEecccchhhh
Confidence 4567777777777777 56999999998877543
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.04 E-value=0.77 Score=40.98 Aligned_cols=226 Identities=12% Similarity=0.107 Sum_probs=102.9
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCeEEEEEeC----CC-------eEEEEECCCC
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSFLLVTISK----DS-------KVRVWDTSTS 291 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~s~----dg-------~v~vwd~~~~ 291 (501)
+++.|+. .+.+||..+..- .. ......... -.++.. .++.+++.|+. ++ .+..||..+.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W----~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENEC----YL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEECSS--EEEEEETTTTEE----EE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred hhhcccc--ceEEECCCCCce----ec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence 4555553 378888887652 11 111111111 122222 36677888873 12 2778888876
Q ss_pred ccccceecccceecCCCceeeecCCCeEEEEeC---------CcEEEEEcCCCceEeeeccCCCcE-EEEEEcCCCcEEE
Q 010784 292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---------SSVVTIDLRTMQKVMTPAICKPIL-HSFSIMPSKSLIC 361 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~v-~~v~~~~~~~~l~ 361 (501)
+.... ...........+...++.+++..| ..+.+||..+.+-...-....... .+++. .++++++
T Consensus 89 ~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv 163 (318)
T 2woz_A 89 EWVGL----PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYC 163 (318)
T ss_dssp EEEEC----SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEE
T ss_pred cEEEC----CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEE
Confidence 54221 111111111222223445555533 147888887765432211111111 11222 3677777
Q ss_pred EEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccccccc
Q 010784 362 TGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLANSL 429 (501)
Q Consensus 362 ~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~ 429 (501)
.|+. -. +.+||+.+.+-. .+..+...... .+++...+++++.|+.+ ..+.+||+.+.+-...-
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 238 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWK----DLAPMKTPRSM-FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEE----ECCCCCCCccc-ceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence 7762 13 889998875411 11111111111 12333345555555433 34778998775432211
Q ss_pred ccCCCCCCCcceeeeEeeccccEEEEeecCC------------CceEEEeeccCCc
Q 010784 430 LCNYPEEADISTGCSAMAVSGCRIVTASYGE------------PGLLQFRDFSNAT 473 (501)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~------------~g~i~~w~~~~~~ 473 (501)
. .+. ......+...++++++.|+.+. ...+.+||.....
T Consensus 239 ~--~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 239 E--FPQ---ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C--CSS---CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred C--CCC---cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 001 1111122234677888887531 1346677765543
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.94 E-value=0.94 Score=41.18 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=111.4
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.....|+++++|.++++-.. +.|.+++ ......+..+ .........|+|+|+. ..++.+.++-...
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf---------~~~g~lYv~~~~~ 99 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRF---------PQEPYVYAYRTVA 99 (352)
T ss_dssp SCEEEEEECTTSCEEEEETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTT---------TTSCEEEEEEEEC
T ss_pred CCceEEEEcCCCeEEEEeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCC---------CCCCEEEEEEecC
Confidence 34789999999997776544 8888887 2211212111 1224567889999820 0013444443322
Q ss_pred -----CceEEec-CCc-------eeeecc---CCCCceEEEEeeecCCCCCCEEEEeeC-------------CCcEEEEe
Q 010784 188 -----HSIRLWW-KGS-------CQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGE-------------DATVRLWS 238 (501)
Q Consensus 188 -----g~i~vwd-~~~-------~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~-------------dg~i~iwd 238 (501)
+.|..++ .+. .+..+. ........++|. ++|.+.++-+. .|.|.-++
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~----pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG----PDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC----TTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC----CCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 5666676 321 111122 111223578885 78876666432 14555555
Q ss_pred ccCCCcccc-------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE------EEEECCCCccccc---------
Q 010784 239 LSSSGKRGQ-------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV------RVWDTSTSSAVRS--------- 296 (501)
Q Consensus 239 ~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v------~vwd~~~~~~~~~--------- 296 (501)
.+..-.... ........++.. ...++|+|.++.++++-.....+ .+.-+..+....-
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCCCCCCcccCCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 543100000 000111123332 45678887455555554333321 1222222221000
Q ss_pred ---eecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCce------EeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 297 ---SCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQK------VMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 297 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~------~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
............+..+.+....++++.- ..|...++..... ...+......+..+++.|||.++++..
T Consensus 255 ~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 255 PRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0000000111233444444555666543 3666666654321 122212235688999999998777664
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.80 E-value=2 Score=43.83 Aligned_cols=317 Identities=11% Similarity=0.014 Sum_probs=159.1
Q ss_pred CceEEeeCCc--EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 113 HDHILLDNND--IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 113 i~~~~~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
|.++..+.++ .++.+ . +-+..++..++ +......-....|.++.... +|.+.+ |..+| +
T Consensus 193 i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-------------~g~lWi-gT~~G-l 253 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGT--E-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDG-------------NGDLLA-GTDNG-L 253 (758)
T ss_dssp EEEEEEETTTTEEEEEE--E-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECT-------------TCCEEE-EETTE-E
T ss_pred eEEEEEECCCCEEEEEE--C-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcC-------------CCCEEE-EeCCc-e
Confidence 6778888754 35554 2 34666776643 22111111234577776655 555554 44444 7
Q ss_pred EEec-CCceeeeccC--------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee--ec--cCC
Q 010784 191 RLWW-KGSCQRCFKG--------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA--TL--YGH 257 (501)
Q Consensus 191 ~vwd-~~~~~~~~~~--------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~~--~~~ 257 (501)
.+++ .......+.. ....|.++.. +.+|. |-.|+..| +.+......-. ... .. ...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~----D~~g~-lWiGT~~G-l~~~~~~~~~~-----~~~~~~~~~~~~ 322 (758)
T 3ott_A 254 YVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA----DQEHN-IWLGTDYG-ISLSRYNSALQ-----FIPISQITGTGD 322 (758)
T ss_dssp EEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE----CTTCC-EEEEESSS-EEEECCCC-CE-----EEEHHHHSCSCC
T ss_pred eEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE----cCCCC-EEEEeCCc-ccccccCCcee-----EEecccCCCCCC
Confidence 7777 2222222211 2245777765 35554 44555666 54443321110 010 00 112
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--ceeccc--ceecCCCceeeecC-CCeEEEEeCCcEEEEEc
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR--SSCCVG--MTSVPGVPVDMKCH-ESMLYIASGSSVVTIDL 332 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~ 332 (501)
...|.++.... ++ .|..|+.+| +..++..+++... ...... .......+.++..+ ...+++++.+.+..+|.
T Consensus 323 ~~~v~~i~~D~-~g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~ 399 (758)
T 3ott_A 323 GNQFYSLFRDS-KG-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDY 399 (758)
T ss_dssp CCBEEEEEECT-TC-CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEET
T ss_pred CceEEEEEEcC-CC-CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCc
Confidence 34577776653 34 455566655 6667665432110 000000 00111234455444 34578888778999998
Q ss_pred CCCceEeeec-c-----CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCC-----CCCCCCCCcccccC-cccCeEEEEe
Q 010784 333 RTMQKVMTPA-I-----CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRS-----QDAVKPQPMAELDG-HVGSVTQLHM 400 (501)
Q Consensus 333 ~~~~~~~~~~-~-----~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~-----~~~~~~~~~~~~~~-h~~~v~~l~~ 400 (501)
.+++...... . ....|.++...++|.+.+....+++.++|..+. .............+ ....|.++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 479 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP 479 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence 8765433211 1 134588888888887666444556999986531 00000000000011 1235889988
Q ss_pred cCC-eEEE-EecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 401 DPY-KIVT-GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 401 ~~~-~~l~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+++ .+.+ +|+. +-|..+|..+++...... . .......+.++....+|.+.+.. ..| +..++.
T Consensus 480 d~~g~lWi~~~t~-~Gl~~~d~~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~lWigt---~~G-l~~~~~ 543 (758)
T 3ott_A 480 DNEGNVWVLLYNN-KGIDKINPRTREVTKLFA-D-ELTGEKSPNYLLCDEDGLLWVGF---HGG-VMRINP 543 (758)
T ss_dssp CTTSCEEEEETTC-SSEEEEETTTTEEEEECT-T-TSCGGGCEEEEEECTTSCEEEEE---TTE-EEEECC
T ss_pred cCCCCEEEEccCC-CCcEEEeCCCCceEEecC-C-CcCCCcccceEEECCCCCEEEEe---cCc-eEEEec
Confidence 888 7766 3444 458889987765433211 0 01113456777777788776654 234 555553
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.78 E-value=1.1 Score=40.65 Aligned_cols=182 Identities=12% Similarity=0.127 Sum_probs=100.3
Q ss_pred eeEEEEeecCCeEEEEE------------eCCCeEEEEECCCCcc-ccceecccc-e-ecCCCceeeecC----CCe-EE
Q 010784 261 IKLMSVAGHKSFLLVTI------------SKDSKVRVWDTSTSSA-VRSSCCVGM-T-SVPGVPVDMKCH----ESM-LY 320 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~------------s~dg~v~vwd~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~----~~~-~~ 320 (501)
...+.+.+ ++..++++ ..+|.|.++|..+... ......... . .....+..+... +.. ++
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556665 55444443 2689999999874321 111111110 0 112344444442 232 44
Q ss_pred EEe----CCcEEEEEcCCCce----EeeeccC-CCcEEEEEEcCCCcEEEEEc---C--------------Cc-EEEEec
Q 010784 321 IAS----GSSVVTIDLRTMQK----VMTPAIC-KPILHSFSIMPSKSLICTGG---I--------------GK-AMTWDI 373 (501)
Q Consensus 321 ~~~----~~~i~~~d~~~~~~----~~~~~~~-~~~v~~v~~~~~~~~l~~~~---~--------------d~-i~iwd~ 373 (501)
++. ++.+.+|++..... +..+.+. -...+.+.+.++|.++++.. . .+ |.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 442 34677777654322 2333322 23578999999999888765 1 12 444544
Q ss_pred CCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-ccc--ccccccCCCCCCCcceeeeEeec
Q 010784 374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GML--ANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
++ . ..+...-...+.++|+|+ .++++-+..+.|..|++.. ++. ...+. .....-.+++.+
T Consensus 211 --~~-~------~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~------~~g~PDGi~vD~ 275 (355)
T 3sre_A 211 --ND-V------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------FDTLVDNISVDP 275 (355)
T ss_dssp --TC-C------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSEEEEEEECT
T ss_pred --Ce-E------EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe------CCCCCceEEEeC
Confidence 22 1 222222345789999999 5666667789999999863 322 11221 124566788998
Q ss_pred -cccEEEEeec
Q 010784 449 -SGCRIVTASY 458 (501)
Q Consensus 449 -~g~~l~s~~~ 458 (501)
+|++.+++..
T Consensus 276 e~G~lwva~~~ 286 (355)
T 3sre_A 276 VTGDLWVGCHP 286 (355)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecC
Confidence 5988876653
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.70 E-value=2.9 Score=45.02 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=115.5
Q ss_pred CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC
Q 010784 130 SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG 207 (501)
Q Consensus 130 ~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~ 207 (501)
....+.|-|+..+..+.+.-..-. +.-.+| ..+.+|.-. ..++.|+| +...++.+.- ..
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP-------------~~~iiALra-g~~lQiFnl~~k~klks~~~-~e 106 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNP-------------ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (1630)
T ss_pred CCceEEEEECCCCCCcccccccch----hhccCC-------------CcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence 344777888876544332211111 122345 556666554 78899999 4445555543 34
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC----CCceeEEEEeecCCeEEEEEe-----
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH----EKPIKLMSVAGHKSFLLVTIS----- 278 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~s~s----- 278 (501)
+|.-=.|. +.+.|+-.+ +..|.-|++..... +...+..| ...|..-..+++..-.+++|-
T Consensus 107 ~VvfWkWi-----s~~~l~lVT-~~aVyHW~~~~~s~-----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 107 DVTFWKWI-----SLNTVALVT-DNAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred CceEEEec-----CCCeeEEEc-CCeEEEeccCCCCc-----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 67666774 344555444 35899999976433 44444444 345555566653333333332
Q ss_pred -CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc--C
Q 010784 279 -KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM--P 355 (501)
Q Consensus 279 -~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~--~ 355 (501)
-.|.+.+|..+.+.. +.+.+|......+... +
T Consensus 176 ~v~G~mQLyS~er~~s---------------------------------------------Q~iegha~~F~~~~~~~~~ 210 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRKVS---------------------------------------------QPIEGHAASFAQFKMEGNA 210 (1630)
T ss_pred cccceeeeeecccccc---------------------------------------------hhhhHhHhhhheeccCCCC
Confidence 235566666554321 1122222222111111 0
Q ss_pred -CCcEEEEEc---CCc-EEEEecCCC---CCCCCCCCcccccC---cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784 356 -SKSLICTGG---IGK-AMTWDIRRS---QDAVKPQPMAELDG---HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 356 -~~~~l~~~~---~d~-i~iwd~~~~---~~~~~~~~~~~~~~---h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~ 423 (501)
...+++.+. .|+ ++|-++... ...+..+.+..+-. -..-..++..++. .++..-+.-|.|+++|+.+|
T Consensus 211 ~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (1630)
T ss_pred CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence 111222221 234 888887543 11111111111111 1233457778887 55555568999999999999
Q ss_pred cccccc
Q 010784 424 MLANSL 429 (501)
Q Consensus 424 ~~~~~~ 429 (501)
.++..-
T Consensus 291 ~~i~~~ 296 (1630)
T 1xi4_A 291 TCIYMN 296 (1630)
T ss_pred hhhhhc
Confidence 988765
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.62 E-value=1.4 Score=40.74 Aligned_cols=274 Identities=10% Similarity=0.060 Sum_probs=143.9
Q ss_pred eEEeeCCcEEEee--cCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 115 HILLDNNDIFSTQ--GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 115 ~~~~~~~~~~~~~--g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
.+.+..|.-..+- .+....+.|-|+..+....+.-..-. +.-.+| ..+.+|.-. ..++.|
T Consensus 29 ~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP-------------~~~iiALra-g~~lQi 90 (494)
T 1bpo_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNP-------------ASKVIALKA-GKTLQI 90 (494)
T ss_dssp TEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS----EEEECS-------------SSSCEEEEE-TTEEEE
T ss_pred eeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccc----eeeeCC-------------CCcEEEEec-CCeEEE
Confidence 3444444433331 33445788888887544433322222 223455 556666654 789999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC----CCceeEEEE
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH----EKPIKLMSV 266 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~~ 266 (501)
+| +...++.+.- ...|.-=.|- +.+.|+-.+ +..|.-|++..... +...+..| ...|..-..
T Consensus 91 Fnle~K~klks~~~-~e~VvfWkWi-----s~~~l~lVT-~taVyHWsi~~~s~-----P~kvFdR~~~L~~~QIInY~~ 158 (494)
T 1bpo_A 91 FNIEMKSKMKAHTM-TDDVTFWKWI-----SLNTVALVT-DNAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRT 158 (494)
T ss_dssp EETTTTEEEEEEEC-SSCCCEEEEE-----ETTEEEEEC-SSEEEEEESSSSCC-----CEEEEECCGGGTTCEEEEEEE
T ss_pred EchHHhhhhcceec-CCCceEEEec-----CCCeEEEEc-CCeeEEecccCCCC-----chhheecchhcccceEEEEEE
Confidence 99 5555666554 3466666775 344555554 45899999976443 44445444 234555556
Q ss_pred eecCCeEEE-EEe------CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 267 AGHKSFLLV-TIS------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 267 ~~~~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
++ +.+.++ +|- -.|.+.+|..+.+.. +
T Consensus 159 d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---------------------------------------------Q 192 (494)
T 1bpo_A 159 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------------------------------------------Q 192 (494)
T ss_dssp CT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCE---------------------------------------------E
T ss_pred CC-CCCeEEEEeecccCCcccceEEEeecccccc---------------------------------------------c
Confidence 65 344433 332 135566666554321 2
Q ss_pred eeccCCCcEEEEEEcCC---CcEEEEEc---CCc-EEEEecCCC---CCCCCCCCccccc---CcccCeEEEEecCC-eE
Q 010784 340 TPAICKPILHSFSIMPS---KSLICTGG---IGK-AMTWDIRRS---QDAVKPQPMAELD---GHVGSVTQLHMDPY-KI 405 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~---~~~l~~~~---~d~-i~iwd~~~~---~~~~~~~~~~~~~---~h~~~v~~l~~~~~-~~ 405 (501)
.+.+|......+.+..+ ..+++-+. .++ ++|.++... ...+..+.+..+- .-.+-..++..++. .+
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 23334333333322211 12233232 234 888888543 1111011111111 11334567888888 55
Q ss_pred EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+..-+.-|.|++||++++.++..-+ -....|...+-.....-++... ..|.|.--.++.
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~~~~Gi~~Vn--r~GqVl~v~v~e 331 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVN--RKGQVLSVCVEE 331 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTTTEEEEEE--TTCEEEEEEECT
T ss_pred EEEEecCceEEEEecccceeeeeec-----ccCCceEEecccCCCCcEEEEc--cCceEEEEEEcc
Confidence 5555699999999999999987763 2234455444444444444444 456666555543
No 335
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=95.53 E-value=0.012 Score=40.97 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=38.1
Q ss_pred ccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCCCCcchhHHHHHHHHHH
Q 010784 23 LNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIA 92 (501)
Q Consensus 23 Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
.|.+++.-||...++..|.++-.-|-. -+-.++.||+++|.+.|+..-+.. ...|++.|.+...+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~~p~e---~esWRelY~rl~~e 77 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEERPEE---YESWREMYLRLQDA 77 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSCCCS---SSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCcccCCCC---CCCHHHHHHHHHHH
Confidence 589999999999999999999877653 345788999999999988655433 45688888765543
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.53 E-value=0.035 Score=52.61 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=84.3
Q ss_pred cEEEEEcCC----CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCC---C----cccccCcc
Q 010784 326 SVVTIDLRT----MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQ---P----MAELDGHV 392 (501)
Q Consensus 326 ~i~~~d~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~---~----~~~~~~h~ 392 (501)
.+.+.|.+. +..+..+-.-......+.++|||+++++++.-. +.++|++........+ + +...+ -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 477888776 333322222344456788999999999998433 9999998532210000 0 11222 13
Q ss_pred cCeEEEEecCC-eEEEEecCCCcEEEEeCCCc----------ccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDTG----------MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
-.....+|+++ ...++---|..|.-|++... ..+..+..|...+|.....+-.-.|||++|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 35677889999 77788789999999999753 34555555555555544444455788999988653
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.05 E-value=1.9 Score=39.03 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=24.3
Q ss_pred cEEEEEcCCCce--EeeeccCCCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCCCCC
Q 010784 326 SVVTIDLRTMQK--VMTPAICKPILHSFSIMPSKSLICTGGIG------K-AMTWDIRRSQD 378 (501)
Q Consensus 326 ~i~~~d~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~~~~ 378 (501)
.+.+||+.+.+- +..+......-.++. .++++++.|+.+ . +.++++++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 467888876543 222222222222222 367777777732 2 55567777654
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.77 E-value=1.8 Score=35.95 Aligned_cols=100 Identities=8% Similarity=-0.030 Sum_probs=59.1
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcce--------eEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARI--------TCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V--------~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.++.++|+|+|.+.+. .++.+.-.+..+. .. ..+-+-...| .++.|.| +|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~-~~-~~W~~s~t~IG~~Gw~~F~a~~fD~-------------~G~LYav 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTH-DN-DNWMGRAKKIGNGGWNQFQFLFFDP-------------NGYLYAV 104 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCS-TT-CCHHHHCEEEECSCGGGCSEEEECT-------------TSCEEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCC-Cc-ccccccccEecccccccceEEEECC-------------CCCEEEe
Confidence 5789999999998887 4555444444321 11 1111112223 6777777 7888877
Q ss_pred eeCCCceEEec--CCceee-------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEE
Q 010784 184 SSCDHSIRLWW--KGSCQR-------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~-------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~i 236 (501)
.||.|.-++ +..... .-..--..+..|.|. |+|.+.+.. |+.+.-
T Consensus 105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~----p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH----PNGYLYAVH--GQQFYK 158 (236)
T ss_dssp --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC----TTSCEEEEE--TTEEEE
T ss_pred --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC----CCceEEEEe--CCcEEe
Confidence 569998887 211111 011122567888885 888777766 777543
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.52 E-value=4.2 Score=36.85 Aligned_cols=61 Identities=3% Similarity=-0.082 Sum_probs=39.2
Q ss_pred cCeEEEEec-------CC-eEEEEecCCCcEEEEeCCCc-ccc--cccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 393 GSVTQLHMD-------PY-KIVTGGRDDLRINIWETDTG-MLA--NSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 393 ~~v~~l~~~-------~~-~~l~~gs~dg~i~iwd~~~~-~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
.....+++. .+ .++++.-..+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF----KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC----TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec----cCCCCCeeEEEECCCCcEEEEEe
Confidence 456778873 34 77777667788988888753 221 1221 11235688899999997766653
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.49 E-value=4.6 Score=37.24 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=80.3
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceec-CCCceeeecCCCeEEEEeCCcEEEEEcCCCc------------
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV-PGVPVDMKCHESMLYIASGSSVVTIDLRTMQ------------ 336 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------ 336 (501)
++..++.+- ++.||.-++.....-+.......... ......+..+++.+.+.....|.+..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 444454443 36788777764421111111110111 1222444455555555666688888886321
Q ss_pred eEeeecc------CCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCc------ccccCcccCeEEEEe
Q 010784 337 KVMTPAI------CKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPM------AELDGHVGSVTQLHM 400 (501)
Q Consensus 337 ~~~~~~~------~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~------~~~~~h~~~v~~l~~ 400 (501)
..+.+.. ...+|..+.|+|- +..|++-..|+ |++||+...... +..+ ..+......|.+++|
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~--P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEK--PIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSC--CEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCC--CcchhccccccCCCcccceEEEEEE
Confidence 1122222 2467999999995 45777777777 999999974322 1100 111222357889999
Q ss_pred cCC--e-EEEEecCCCcEEEE
Q 010784 401 DPY--K-IVTGGRDDLRINIW 418 (501)
Q Consensus 401 ~~~--~-~l~~gs~dg~i~iw 418 (501)
.++ . ++++.+..|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 988 3 34344577877654
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.38 E-value=0.73 Score=43.57 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc------CcccCeEEEEecC----C-eEEEEecC--
Q 010784 346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD------GHVGSVTQLHMDP----Y-KIVTGGRD-- 411 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~----~-~~l~~gs~-- 411 (501)
.....++|.|+|+++++-..++ |++++..+++.. .+..+. ........|+++| + .++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~----~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK----TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe----EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 4567999999999999888776 888876544321 111111 1245678999998 5 55555432
Q ss_pred ----------CCcEEEEeCCCc--cc--ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 412 ----------DLRINIWETDTG--ML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 412 ----------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
...|.-|+...+ +. ...+....+.........++|.|||.+.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665322 10 11111101111223468899999998777754
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.79 E-value=5.4 Score=36.09 Aligned_cols=242 Identities=10% Similarity=-0.002 Sum_probs=115.2
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec---CCeEEEEEeC-----
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH---KSFLLVTISK----- 279 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~s~s~----- 279 (501)
.-..|+|. ++|+.|+.+...|.|++++.+.......................|+++|+ ++.+.++-+.
T Consensus 19 ~P~~i~~~----pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFL----PDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEEC----STTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEc----CCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 45688885 78883444567899999885322100000000111122345688999984 4555554333
Q ss_pred --CCeEEEEECCCCcc-ccceec-cccee----cCCCceeeecCCC-eEEEEeCC---------------cEEEEEcCCC
Q 010784 280 --DSKVRVWDTSTSSA-VRSSCC-VGMTS----VPGVPVDMKCHES-MLYIASGS---------------SVVTIDLRTM 335 (501)
Q Consensus 280 --dg~v~vwd~~~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~~~~~~---------------~i~~~d~~~~ 335 (501)
...|..+++..... +..... ..... .......+.+.++ .++++.+. .|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23566666653311 111110 00000 0111234555544 45555532 3555554421
Q ss_pred c------------eEeeeccCCCcEEEEEEcC-CCcEEEEEcC-Cc-EEEEecCCCCCC---------------------
Q 010784 336 Q------------KVMTPAICKPILHSFSIMP-SKSLICTGGI-GK-AMTWDIRRSQDA--------------------- 379 (501)
Q Consensus 336 ~------------~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~-d~-i~iwd~~~~~~~--------------------- 379 (501)
- ....+...-.....++|+| +++++++-.. ++ =.|.-+..+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0 1111111123467899999 6766665432 11 222222222110
Q ss_pred ----CCCCCcccccCcccCeEEEEecC-------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee
Q 010784 380 ----VKPQPMAELDGHVGSVTQLHMDP-------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 380 ----~~~~~~~~~~~h~~~v~~l~~~~-------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
....++..+.. ...+..+++.. + .++++.-..+.|...++..++.......- ......+..+++.
T Consensus 255 ~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIRDVRTG 331 (353)
T ss_dssp SSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEEEEEEC
T ss_pred CCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCceeEEEEC
Confidence 00112222222 23566777753 3 67777667788888887755433221100 1113468889999
Q ss_pred ccccEEEEe
Q 010784 448 VSGCRIVTA 456 (501)
Q Consensus 448 ~~g~~l~s~ 456 (501)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999866653
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.85 E-value=0.68 Score=38.38 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccC--------eEEEEecCC-eEEEEecCCCcEEE
Q 010784 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGS--------VTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.+..++|+|+|.+.++ .++.++-.+..+.+.. ...+-... ..++.|+|+ .+.++ .||.|+-
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-------~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr 111 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-------NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK 111 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-------CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcc-------cccccccEecccccccceEEEECCCCCEEEe--CCCEEEE
Confidence 5669999999998888 5555666665543221 11111122 378899999 66666 5699988
Q ss_pred EeCCCcccccccccCCC--CCCCcceeeeEeeccccEEEEe
Q 010784 418 WETDTGMLANSLLCNYP--EEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
++-.+...-.-+..... ..-=..+..+.|.|+|.+.++.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 88644222221110000 0011357889999999888776
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.45 E-value=3.3 Score=37.55 Aligned_cols=108 Identities=10% Similarity=0.190 Sum_probs=58.8
Q ss_pred CcEEEEEEcCCCc-EEEEEcCCcEEEEecCCCCCCCCCCCcccc----cCcccCeEEEEecC----C-eEEEEecC----
Q 010784 346 PILHSFSIMPSKS-LICTGGIGKAMTWDIRRSQDAVKPQPMAEL----DGHVGSVTQLHMDP----Y-KIVTGGRD---- 411 (501)
Q Consensus 346 ~~v~~v~~~~~~~-~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~----~-~~l~~gs~---- 411 (501)
.....|+|.|+|+ ++++-..+.|++++... +.. ..+..+ .........|+++| + .++++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 3467899999999 77766554588888532 211 111111 12244678999998 3 55555332
Q ss_pred ---CCcEEEEeCCCcc----cccccccCCCC--CCCcceeeeEeeccccEEEEee
Q 010784 412 ---DLRINIWETDTGM----LANSLLCNYPE--EADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 412 ---dg~i~iwd~~~~~----~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
...|..|++.... ....+....+. .....-..++|.|||.+.++.+
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2356667664321 11111111111 1112245799999997666654
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.99 E-value=1.1 Score=40.21 Aligned_cols=193 Identities=9% Similarity=0.009 Sum_probs=94.0
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEe--ecCCeEEEEE-eCCCeEEEEECCCCccccce
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVA--GHKSFLLVTI-SKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~ 297 (501)
+.+++.++.||.|.-.|..+++. .-.+... ..++....-. +.++..++.. +.||.|..++..++......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~------~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHI------IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEE------EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcE------EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 45788899999999999988864 3333221 1122111100 0123444443 68999999998887433221
Q ss_pred ecccceecCCCceeee----c-------CCCeEEEEe-CCcEEEEEcCCCceEeeeccCC--Cc-----EEEEEEc----
Q 010784 298 CCVGMTSVPGVPVDMK----C-------HESMLYIAS-GSSVVTIDLRTMQKVMTPAICK--PI-----LHSFSIM---- 354 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~----~-------~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~-----v~~v~~~---- 354 (501)
.... .....++... . .+..+++.+ .+.+...|+++|+.+..+.... +. ..+....
T Consensus 84 ~~~~--lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 84 SIRQ--LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EHHH--HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred cccc--ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 1110 0111111110 0 223333333 3489999999999998887432 11 1111110
Q ss_pred -CCCcEEEEEcCCc-EEEEecCCCCCCCCCCC-cccccCcc--cCe-EEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784 355 -PSKSLICTGGIGK-AMTWDIRRSQDAVKPQP-MAELDGHV--GSV-TQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN 427 (501)
Q Consensus 355 -~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~h~--~~v-~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~ 427 (501)
-.+..++.+..+. +.+.+ ++++ . ... ........ ..+ ..-..+.+ .+++ ++.||.|.-+|..+|+.+-
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~-~--W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA-S--YNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC-C--CCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC-e--EEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence 1235666676666 77766 4442 2 110 00000000 000 00001123 4444 4688888888888887664
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.85 E-value=1.8 Score=38.77 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=24.4
Q ss_pred CeEEEEecCCCcEEEEeCCCcccccccccC
Q 010784 403 YKIVTGGRDDLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 432 (501)
+..+.+|+.+|++...|+.+|+.+.++...
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 455566679999999999999999888543
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.57 E-value=18 Score=36.21 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=40.1
Q ss_pred CCCEEEEeeCCC--cEEEEeccCCCccccccceee---ccCCCCceeEEEEeecCCeEEEEEeC--C-----CeEEEEEC
Q 010784 221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKAT---LYGHEKPIKLMSVAGHKSFLLVTISK--D-----SKVRVWDT 288 (501)
Q Consensus 221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~s~s~--d-----g~v~vwd~ 288 (501)
++.+++.|+.++ .+.+||..+..- ..+.. ..........+.+....+.+++.|+. + ..+.+||+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence 678888888655 688999887542 11111 11111122234444323677777775 2 45889999
Q ss_pred CCCc
Q 010784 289 STSS 292 (501)
Q Consensus 289 ~~~~ 292 (501)
.+.+
T Consensus 576 ~~~~ 579 (695)
T 2zwa_A 576 DAEN 579 (695)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8876
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.44 E-value=12 Score=33.84 Aligned_cols=236 Identities=11% Similarity=-0.012 Sum_probs=111.8
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC- 186 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~- 186 (501)
.....|++.++|.++++-.. +.|.+++.. +.+.+..+ .........|+++|+ |..++.+.++-..
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pd---------f~~~g~lyv~~~~~ 97 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPE---------FPKKSWVYLYASYF 97 (354)
T ss_dssp SCEEEEEEEETTEEEEEETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTT---------TTTSCEEEEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCC---------CCcCCEEEEEEecc
Confidence 44789999999997777655 788877733 32222211 122345788999982 1112444444332
Q ss_pred --C----CceEEec-CCc--------ee-eecc-CCCCceEEEEeeecCCCCCCEEEEeeC-------------CCcEEE
Q 010784 187 --D----HSIRLWW-KGS--------CQ-RCFK-GHNGPVSTLSDKLLGDGSGKILASGGE-------------DATVRL 236 (501)
Q Consensus 187 --d----g~i~vwd-~~~--------~~-~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~-------------dg~i~i 236 (501)
+ +.|..|+ .+. .+ ..+. .....-..|+|. ++|.+.++-+. .|.|.-
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~----pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG----PDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC----TTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC----CCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 2 4566665 221 11 1122 111123568885 78887776432 244555
Q ss_pred EeccCCCcccc-c-cceeeccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCcccc------------ceec
Q 010784 237 WSLSSSGKRGQ-Q-ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVR------------SSCC 299 (501)
Q Consensus 237 wd~~~~~~~~~-~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~------------~~~~ 299 (501)
++.+..-.... . .......++.. ...++|.+.++.++++-...+ .|.+.. .+.... ....
T Consensus 174 i~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p 250 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDP 250 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCC
T ss_pred EcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCC
Confidence 55432100000 0 00111223433 357888874555555433221 233322 221000 0000
Q ss_pred ccce-ecCCCceeeec--------CCCeEEEEeC--CcEEEEEcCCCc-eE--eee-ccCCCcEEEEEEcCCCcEEEEEc
Q 010784 300 VGMT-SVPGVPVDMKC--------HESMLYIASG--SSVVTIDLRTMQ-KV--MTP-AICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 300 ~~~~-~~~~~~~~~~~--------~~~~~~~~~~--~~i~~~d~~~~~-~~--~~~-~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
.... .....+..+.+ ....++++.- +.|..+++.... .. ..+ ......+..+++.|||.++++..
T Consensus 251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0000 01122333333 2334555543 467777876532 21 222 22245688999999998777664
No 349
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.34 E-value=14 Score=33.23 Aligned_cols=239 Identities=11% Similarity=0.020 Sum_probs=120.4
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee----ccCCCCceeEEEEeec---CCeEEEEE-
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT----LYGHEKPIKLMSVAGH---KSFLLVTI- 277 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~---~~~~l~s~- 277 (501)
-..-..|+|. ++|.++++--..|.|++++...+.. ..+.. ..........|+++|+ ++.+.++-
T Consensus 31 L~~P~~ia~~----pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 31 LNSPWGLAPL----PGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp CSSEEEEEEC----TTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCceEEEEc----CCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 3456788986 7888777765589999987654432 11211 1223456789999873 34444432
Q ss_pred -eCCCeEEEEECCCCc----cccceec-cccee--cCCCceeeecCCC-eEEEEeC---------------CcEEEEEcC
Q 010784 278 -SKDSKVRVWDTSTSS----AVRSSCC-VGMTS--VPGVPVDMKCHES-MLYIASG---------------SSVVTIDLR 333 (501)
Q Consensus 278 -s~dg~v~vwd~~~~~----~~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~~~~---------------~~i~~~d~~ 333 (501)
..++.|.-|...... .+..... ..... .....-.+.+.++ .++++.+ +.|.-++..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 245566666665421 1111111 11110 1111223444443 4556543 133333433
Q ss_pred CC--------ceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCC------------CCCCCcccccCc
Q 010784 334 TM--------QKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDA------------VKPQPMAELDGH 391 (501)
Q Consensus 334 ~~--------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~------------~~~~~~~~~~~h 391 (501)
.. .......+| .....++|+|+|.++++-. .+. =.|--+..+... ....++..+..+
T Consensus 183 G~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 21 000111122 2346799999988777654 222 233333333221 001223333333
Q ss_pred ccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccc---ccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLAN---SLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
......++|....++.+.-..+.|....+.....+. .+. .+....+..++..|||.++++..
T Consensus 262 ~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l----~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFL----EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEES----TTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEee----cCCCCCccEEEECCCCcEEEEEc
Confidence 345677888767666665566677666665443211 121 12245788999999998777654
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.68 E-value=22 Score=35.71 Aligned_cols=144 Identities=7% Similarity=0.063 Sum_probs=71.1
Q ss_pred cEEEEEcCCCceEeee-c-----cC-CCcEEEEEEcC-CCcEEEEEcCC------c-EEEEecCCCCCCCCCCCcccccC
Q 010784 326 SVVTIDLRTMQKVMTP-A-----IC-KPILHSFSIMP-SKSLICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~-~-----~~-~~~v~~v~~~~-~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
.+.+||..+.+-...- . .. ...-.+++..+ ++++++.|+.+ . +.+||..+.+- ..+..+..
T Consensus 413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~ 488 (695)
T 2zwa_A 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSH 488 (695)
T ss_dssp CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSB
T ss_pred cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCC
Confidence 5788888776543322 1 01 11112333333 77788887721 3 78899887431 11122211
Q ss_pred cccCeEEEEecCCeEEEEecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-ccEEEEeecCCC-----c
Q 010784 391 HVGSVTQLHMDPYKIVTGGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-GCRIVTASYGEP-----G 462 (501)
Q Consensus 391 h~~~v~~l~~~~~~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~-----g 462 (501)
....-..+.+..+++++.|+.++ .+.+||..+.+-...-...........-.++.+..+ +++++.||.+.+ .
T Consensus 489 ~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 489 TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 11122233333446666665544 699999987543221110000001112233455555 778888876323 4
Q ss_pred eEEEeeccCCc
Q 010784 463 LLQFRDFSNAT 473 (501)
Q Consensus 463 ~i~~w~~~~~~ 473 (501)
.+.+||+....
T Consensus 569 ~v~~yd~~~~~ 579 (695)
T 2zwa_A 569 KAIIFKYDAEN 579 (695)
T ss_dssp EEEEEEECTTC
T ss_pred cEEEEEccCCc
Confidence 57788876655
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.57 E-value=16 Score=34.44 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=58.9
Q ss_pred CcEEEEEEcCCCc--EEEEEcCCcEEEEecCCCCCCCCCCCcccc----c-----CcccCeEEEEecCC-----eEEEEe
Q 010784 346 PILHSFSIMPSKS--LICTGGIGKAMTWDIRRSQDAVKPQPMAEL----D-----GHVGSVTQLHMDPY-----KIVTGG 409 (501)
Q Consensus 346 ~~v~~v~~~~~~~--~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~----~-----~h~~~v~~l~~~~~-----~~l~~g 409 (501)
.....|+|.|+|. ++++-..+.|++++...... ..++..+ . ........|+++|+ .++++-
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3457899999985 77666555599997542211 0111111 1 12457889999996 444443
Q ss_pred cC--C----------CcEEEEeCCCc----------ccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 410 RD--D----------LRINIWETDTG----------MLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 410 s~--d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
+. + ..|.-|.+..+ +.+..+.. ......-..++|.|||.+.++.+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECTTSCEEEEEC
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECCCCcEEEEeC
Confidence 32 1 14555665431 12222211 11223457899999998777765
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.91 E-value=25 Score=30.47 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=117.5
Q ss_pred CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE
Q 010784 207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW 286 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw 286 (501)
..|..++. .....++. . ||.|..|-.....+.. ........|..++.. ....++. . ||.|..|
T Consensus 24 ~~i~~ia~-----G~~h~~~l-~-~G~v~~wG~n~~Gqlg------~p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~w 86 (282)
T 3qhy_B 24 SGVDAIAG-----GYFHGLAL-K-GGKVLGWGANLNGQLT------MPAATQSGVDAIAAG--NYHSLAL-K-DGEVIAW 86 (282)
T ss_dssp SSCCEEEE-----CSSEEEEE-E-TTEEEEEECCSSSTTS------CCGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEE
T ss_pred CCCcEEEe-----CCCeEEEE-E-CCEEEEEeCCCCCCCC------CCccCCCCEEEEEeC--CCEEEEE-E-CCEEEEe
Confidence 35777775 33344444 5 9999999877654311 111112356666664 3444444 4 8999999
Q ss_pred ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784 287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 366 (501)
-....-.+.... .....+..+.......++.+.+.+..|-......+-........|..++...+..+++ .++
T Consensus 87 G~n~~Gqlg~P~-----~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~~G 159 (282)
T 3qhy_B 87 GGNEDGQTTVPA-----EARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--KNG 159 (282)
T ss_dssp ECCTTSTTCCCG-----GGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETT
T ss_pred eCCCCCCCCCCc-----ccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--ECC
Confidence 866432221101 1123455666655555444466888887654322211111234577777654433333 244
Q ss_pred cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEe
Q 010784 367 KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAM 446 (501)
Q Consensus 367 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 446 (501)
.++.|-......+ ..+... ...|..++......++. .||.|..|-....-.+..- ......|..++.
T Consensus 160 ~v~~wG~n~~gql--g~p~~~----~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p-----~~~~~~v~~i~~ 226 (282)
T 3qhy_B 160 GVIAWGDNYFGQT--TVPAEA----QSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVP-----TEALSGVSAIAS 226 (282)
T ss_dssp EEEEEECCTTSTT--SCCGGG----GSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCC-----GGGGSSCCEEEE
T ss_pred EEEEecCCCCCCC--CCceec----CCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCC-----cccCCCceEEEc
Confidence 4999977654433 111111 35688888777744444 4899999976542222111 111223455544
Q ss_pred eccccEEEEeecCCCceEEEeeccCC
Q 010784 447 AVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 447 s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
.......++ | |.|+.|-....
T Consensus 227 G~~h~~al~---~--g~v~~wG~n~~ 247 (282)
T 3qhy_B 227 GEWYSLALK---N--GKVIAWGSSRT 247 (282)
T ss_dssp CSSCEEEEE---T--TEEEEESTTCC
T ss_pred CCCEEEEEE---C--CEEEEecCCCC
Confidence 333333333 3 77777765543
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=80.58 E-value=28 Score=30.16 Aligned_cols=221 Identities=12% Similarity=0.139 Sum_probs=119.3
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
.|..++.-. ...++. . ||.|..|- .+++-... .....|..++. .....++. . |
T Consensus 25 ~i~~ia~G~--------------~h~~~l-~-~G~v~~wG~n~~Gqlg~p~-~~~~~i~~ia~-----G~~hs~~l-~-~ 80 (282)
T 3qhy_B 25 GVDAIAGGY--------------FHGLAL-K-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAA-----GNYHSLAL-K-D 80 (282)
T ss_dssp SCCEEEECS--------------SEEEEE-E-TTEEEEEECCSSSTTSCCG-GGGSCCCEEEE-----CSSEEEEE-E-T
T ss_pred CCcEEEeCC--------------CeEEEE-E-CCEEEEEeCCCCCCCCCCc-cCCCCEEEEEe-----CCCEEEEE-E-C
Confidence 577777643 233444 4 99999994 22221111 12336777775 34445554 4 9
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
|.|..|-.....+... ...-...|..|+.. .. ..+.-. ||.|..|-....-.+.. .......+..
T Consensus 81 G~v~~wG~n~~Gqlg~------P~~~~~~v~~ia~G--~~-hs~al~-~G~v~~wG~n~~gqlg~-----~~~~~~~i~~ 145 (282)
T 3qhy_B 81 GEVIAWGGNEDGQTTV------PAEARSGVDAIAAG--AW-ASYALK-DGKVIAWGDDSDGQTTV-----PAEAQSGVTA 145 (282)
T ss_dssp TEEEEEECCTTSTTCC------CGGGSSSEEEEEEE--TT-EEEEEE-TTEEEEEECCTTSTTSC-----CGGGGSSEEE
T ss_pred CEEEEeeCCCCCCCCC------CcccCCCeEEEECc--CC-EEEEEe-CCeEEEecCCCCCcCCC-----CccCCCCeEE
Confidence 9999998776543111 11112467777665 33 333344 99999997654322110 0012233555
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
+.......++.+.+.+..|-......+..-..-...|..++...+.. ++. .++.++.|-......+ ..+...
T Consensus 146 i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gql--g~p~~~---- 217 (282)
T 3qhy_B 146 LDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQT--TVPTEA---- 217 (282)
T ss_dssp EEECSSEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTT--CCCGGG----
T ss_pred EEcccCEEEEEECCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCC--CCCccc----
Confidence 55555555555667888886654322211111135677777654433 333 4333999977654433 222222
Q ss_pred ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc
Q 010784 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~ 424 (501)
...|..++......++. . ||.|..|-.....
T Consensus 218 ~~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 218 LSGVSAIASGEWYSLAL-K-NGKVIAWGSSRTA 248 (282)
T ss_dssp GSSCCEEEECSSCEEEE-E-TTEEEEESTTCCC
T ss_pred CCCceEEEcCCCEEEEE-E-CCEEEEecCCCCc
Confidence 23577787766644444 2 8999999765543
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.06 E-value=37 Score=32.67 Aligned_cols=77 Identities=8% Similarity=-0.063 Sum_probs=54.4
Q ss_pred eEEEecCCCCceEEeeCCcEEEeec-CCeeeEEEEeccccccc------------ceecccCCcceeEEEeeccCcCccc
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQG-SSIQNIKIDNFLSESYY------------RATLSDHKARITCMRLFPLHETSLF 170 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g-~~d~~i~vw~~~~~~~~------------~~~~~~h~~~V~~~~~~~~~~~~~~ 170 (501)
..+...++.+..+.++|||++++.+ -.+.++.|+++.+-... ....+ -.-.-...+|.+
T Consensus 316 ~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~------- 387 (638)
T 3sbq_A 316 TRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG------- 387 (638)
T ss_dssp EEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-------
T ss_pred EEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-------
Confidence 3555677889999999999998755 45899999998742110 11111 122355677877
Q ss_pred ccCCCCcCcEEEEeeCCCceEEec
Q 010784 171 RSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 171 ~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
+|+...|-.-|..|.-||
T Consensus 388 ------~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 388 ------RGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp ------SSEEEEEETTTTEEEEEE
T ss_pred ------CCceEeeeeecceEEEEe
Confidence 787777778899999998
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=74.40 E-value=51 Score=29.96 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCeEEEEeC--CcEEEEEcCCCceEeeec--------------cC----CCcEEEEEEcCC----CcEEEEEcCCcEEEE
Q 010784 316 ESMLYIASG--SSVVTIDLRTMQKVMTPA--------------IC----KPILHSFSIMPS----KSLICTGGIGKAMTW 371 (501)
Q Consensus 316 ~~~~~~~~~--~~i~~~d~~~~~~~~~~~--------------~~----~~~v~~v~~~~~----~~~l~~~~~d~i~iw 371 (501)
....+++.. ..+.++|+.+++.-+... +. ...+..|+++|+ ++.|.-..-.+-++|
T Consensus 170 ~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 170 ETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred ccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 344566653 379999998876644331 00 246888999997 666665554343444
Q ss_pred ecCC-----CCCCCCCCCcccccCcc---cCeEEEEec-CC-eEEEEecCCCcEEEEeCCC-c---ccccccccCCCCCC
Q 010784 372 DIRR-----SQDAVKPQPMAELDGHV---GSVTQLHMD-PY-KIVTGGRDDLRINIWETDT-G---MLANSLLCNYPEEA 437 (501)
Q Consensus 372 d~~~-----~~~~~~~~~~~~~~~h~---~~v~~l~~~-~~-~~l~~gs~dg~i~iwd~~~-~---~~~~~~~~~~~~~~ 437 (501)
.+.+ ... ...+..+ +.. ..-..++++ .+ .++.+--....|..|+..+ . +....+. +. ..
T Consensus 250 ~V~T~~L~~~~~---~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~-~d--~~ 322 (381)
T 3q6k_A 250 SVNTKELKQKGG---KLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVY-TS--SR 322 (381)
T ss_dssp EEEHHHHSSTTC---CCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEE-EC--TT
T ss_pred EEEHHHhhCcch---hhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEE-EC--CC
Confidence 4432 211 1112222 112 223456676 44 6777767888999999865 1 1122221 11 12
Q ss_pred CcceeeeEeeccccEEEEee
Q 010784 438 DISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~~ 457 (501)
-.....+.+..+|.+.+...
T Consensus 323 l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 323 FVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CCSEEEEEECTTSCEEEEEC
T ss_pred ccccCeEEECCCCeEEEEEC
Confidence 33556667666666555543
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.97 E-value=41 Score=31.67 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=20.5
Q ss_pred ceEEEEeeecCCCCCC-EEEEeeCCCcEEEEecc
Q 010784 208 PVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLS 240 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~ 240 (501)
.-..|+|. +++. .|+.+...|.|++++.+
T Consensus 15 ~P~~~a~~----pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHS----GDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECC----SSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEEC----CCCCeEEEEEeCCceEEEEeCC
Confidence 34678885 7775 45555788999999754
No 357
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=70.81 E-value=59 Score=29.13 Aligned_cols=237 Identities=10% Similarity=0.007 Sum_probs=111.3
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce--eeec----cCCCCceEEEEeeecCCCCCCE
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC--QRCF----KGHNGPVSTLSDKLLGDGSGKI 224 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~--~~~~----~~h~~~v~~l~~s~~~~~~~~~ 224 (501)
-..-+.|+|.| +|.++++--..|.|++++ .+.. +..+ .........|+|+|.... +..
T Consensus 31 L~~P~~ia~~p-------------dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~-~g~ 96 (347)
T 3das_A 31 LNSPWGLAPLP-------------GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYAS-DHM 96 (347)
T ss_dssp CSSEEEEEECT-------------TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHH-HCE
T ss_pred CCCceEEEEcC-------------CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecccccc-CCE
Confidence 34567899998 788877776689999997 2332 2111 223566789999721111 334
Q ss_pred EEEe---eCCCcEEEEeccCCC----cc-ccccceeecc-CCCCceeEEEEeecCCeEEEEEeC-------------CCe
Q 010784 225 LASG---GEDATVRLWSLSSSG----KR-GQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISK-------------DSK 282 (501)
Q Consensus 225 l~sg---~~dg~i~iwd~~~~~----~~-~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~-------------dg~ 282 (501)
|+.. ..++.|.-|.+.... .. ....++..+. .....-..|.|.| ++.++++.+. .|.
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCE
Confidence 4432 234566666665421 10 1111122221 1122335688987 6666666442 244
Q ss_pred EEEEECCCCccccceecc-cce--ecCCCceeeecCCCe-EEEEeCC---cEEEEEcCCCc------------------e
Q 010784 283 VRVWDTSTSSAVRSSCCV-GMT--SVPGVPVDMKCHESM-LYIASGS---SVVTIDLRTMQ------------------K 337 (501)
Q Consensus 283 v~vwd~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~---~i~~~d~~~~~------------------~ 337 (501)
|.-.+....-. ...... ... .-...+..+.++++. ++++..+ .-.+--++.+. +
T Consensus 176 IlRi~~dG~ip-~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P 254 (347)
T 3das_A 176 ILRMTPDGEPA-PGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDP 254 (347)
T ss_dssp EEEECTTSSBC-TTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCC
T ss_pred EEEEeCCCCcc-CCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCC
Confidence 44444432200 000000 000 011124445555443 3333322 11121111111 1
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~ 408 (501)
+..+..+......++|. ++.++...-.+. |....+...... .+...-+.+..+.+..|+..|+ .++++
T Consensus 255 ~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~--~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 255 VAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAA--ADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp SEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEES--SCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred cEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCcee--cceEEeecCCCCCccEEEECCCCcEEEE
Confidence 12222222345677776 466666666666 766676654321 1111223343467888888888 55444
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=67.97 E-value=71 Score=28.99 Aligned_cols=27 Identities=7% Similarity=-0.087 Sum_probs=17.3
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEE
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWD 287 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd 287 (501)
.+.+|.+.+.+...++.+...+ |...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 4788888875556677676544 44433
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.84 E-value=9.4 Score=40.91 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=28.7
Q ss_pred CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784 394 SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 394 ~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
.+.+++..++ .++.+-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3445555666 777777899999999999999887754
No 360
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=66.93 E-value=84 Score=29.40 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=57.4
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce--eeeccC------CCCceEEEEeeecCCCCCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC--QRCFKG------HNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~--~~~~~~------h~~~v~~l~~s~~~~~~~~ 223 (501)
...+.|+|.| +|+++++-...+.|++++ .+.. +..+.. .......|+|+|....++.
T Consensus 27 ~~P~~~a~~p-------------dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 27 NKPHALLWGP-------------DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp SSEEEEEECT-------------TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CCceEEEEcC-------------CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 3466899998 788777755445788886 2332 222221 2456779999732222444
Q ss_pred EEEEeeC------------CCcEEEEeccCCCc--cccccceeecc-CCCCceeEEEEeecCCeEEEEEeC
Q 010784 224 ILASGGE------------DATVRLWSLSSSGK--RGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISK 279 (501)
Q Consensus 224 ~l~sg~~------------dg~i~iwd~~~~~~--~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~ 279 (501)
+.++-+. ...|.-+++..... .....++..+. ........|.|.| ++.++++.+.
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 4444332 23555566543211 00011121122 1123457888987 6666665543
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.89 E-value=1.3e+02 Score=31.34 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=30.3
Q ss_pred CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784 394 SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 394 ~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
.+.+++..++ .++.+-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5667777777 677777799999999999999888764
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.14 E-value=37 Score=33.81 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=43.5
Q ss_pred CeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCC-CC-------cceeeeEeeccccEEEEeecCCCceEE
Q 010784 394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEE-AD-------ISTGCSAMAVSGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 394 ~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-~~-------~~v~~~~~s~~g~~l~s~~~d~~g~i~ 465 (501)
.|.++.+. +.++.+-+.|+++|+|++.+++++.+........ .. ..-.-+.. -+.++++=+.-+.|..+
T Consensus 223 ~Is~~~~~-~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl--~~~~lv~y~P~~~G~Fk 299 (729)
T 3f7f_A 223 VISCKLFH-ERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSL--YNNTLVTLLPLENGLFQ 299 (729)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEE--SSSEEEEEETTTTCEEE
T ss_pred eEEEeccC-CcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhh--eeeEEEEEecCCCCeEE
Confidence 35544443 5555555799999999999999887775421110 00 01011111 13566654443668899
Q ss_pred EeeccCCc
Q 010784 466 FRDFSNAT 473 (501)
Q Consensus 466 ~w~~~~~~ 473 (501)
+|.+....
T Consensus 300 ~~~l~~~~ 307 (729)
T 3f7f_A 300 MGTLLVDS 307 (729)
T ss_dssp EEEEEC--
T ss_pred EEEEEEcC
Confidence 99875433
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.36 E-value=96 Score=32.41 Aligned_cols=37 Identities=32% Similarity=0.314 Sum_probs=28.6
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
.+.++...+ +..++++-+.|+++|+|++.+++.+...
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 345555554 6678999999999999999999766543
No 364
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=52.92 E-value=6.9 Score=28.85 Aligned_cols=63 Identities=21% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCcccccccHHH------------------HHHHHhcC----ChhhhHHHHhhChhHHHHcCC--chh
Q 010784 4 PSPAVDEASPSPSTTAIADLNEDA------------------VAHCALNL----SLQDISNMAMSCKLFKHVAYS--DSV 59 (501)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~Lp~e~------------------~~~i~~~L----~~~~l~~~~~vc~~~~~~~~~--~~l 59 (501)
|.++..+.||.|+++.-..|| |+ +..+..|| +.++|-.+..+.|.|++++.. ...
T Consensus 19 ~~~~~~~~p~~P~f~g~t~l~-evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~rlv~~~~~~~ 97 (124)
T 3vu7_H 19 SDPAGCVRPPAPNLAGAVEFN-DVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESV 97 (124)
T ss_dssp -----------CCCSSSCSHH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSCSTTH
T ss_pred cccCCCCCCCCCccCCCcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhcccccH
Confidence 444545556667777666665 22 12222333 456777777777777777633 466
Q ss_pred HHHHHhhh
Q 010784 60 WQRLFREQ 67 (501)
Q Consensus 60 W~~~~~~~ 67 (501)
|+..|++.
T Consensus 98 W~~Ay~~I 105 (124)
T 3vu7_H 98 WNMAFDFI 105 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 365
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.22 E-value=52 Score=31.76 Aligned_cols=62 Identities=8% Similarity=0.016 Sum_probs=41.5
Q ss_pred cCeEEEEecCC-eEEEEecC------------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 393 GSVTQLHMDPY-KIVTGGRD------------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 393 ~~v~~l~~~~~-~~l~~gs~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.....|.|+++ .+.++... ...|..++..+++....+. ......++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~----~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV----GPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE----CCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe----CCCCccccCCEECCCCCEEEEEEe
Confidence 34678999998 66663211 1256777777777655442 112457899999999999888764
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.03 E-value=54 Score=31.89 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=40.6
Q ss_pred eEEEEecCC-eEEEEecCC------------CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 395 VTQLHMDPY-KIVTGGRDD------------LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 395 v~~l~~~~~-~~l~~gs~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.-.|+|+|. .++++-..+ ..+.+.+..+++..+.+.. .....++.++|+||++.|++.-.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~----P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG----PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC----CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC----CCCccCcCeeECCCCCEEEEEEE
Confidence 456889999 766653211 2355566666776555532 23678999999999999887654
No 367
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=40.90 E-value=1.8e+02 Score=25.25 Aligned_cols=228 Identities=7% Similarity=-0.052 Sum_probs=0.0
Q ss_pred eeccCcCcccccCCCCcCcEEEEeeC--CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----
Q 010784 161 LFPLHETSLFRSEPQRTENVLVTSSC--DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA----- 232 (501)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg----- 232 (501)
|+. ++..+..... ++.|...+ .+.....+.... +--++ +++.+|+-+....
T Consensus 21 ~~~-------------~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~----~~g~~Iyy~~~~~~~~~~ 79 (302)
T 3s25_A 21 FCE-------------SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYIN----ADKNYVYYVRNNNQKITS 79 (302)
T ss_dssp EEE-------------ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEE----ECSSEEEEEEECC-----
T ss_pred EEE-------------eCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEE----EcCCEEEEEECCCCcccc
Q ss_pred ---------cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE---eCCCeEEEEECCCCccccceecc
Q 010784 233 ---------TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI---SKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 233 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~---s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.|+..+++..+ ...+...... .+++.+..+..+- ..+..|...++.....
T Consensus 80 ~~~~~~n~~~Iy~i~~dg~~-------~~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~------- 141 (302)
T 3s25_A 80 QTFFSYDRNSLCRIKRNGHG-------STVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK------- 141 (302)
T ss_dssp -CCSSCCSEEEEEEETTSCC-------CEEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-------
T ss_pred cceeccCCCeEEEEeCCCCc-------ceEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-------
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQD 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~ 378 (501)
..+..+.. .+++++++.|+-.+.+. |..-++..+..
T Consensus 142 --------------------------------------~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 142 --------------------------------------KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp --------------------------------------EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred --------------------------------------EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Q ss_pred CCCCCCcccccCcccCeEEEEecCC--eEEEEecCCC-cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDL-RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
. ..+.+.. ...++|+ .++.+...++ .|..-++......... ...+.. |+|++++|..
T Consensus 180 ~------~l~~~~~----~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt--------~~~~~~--~~~~g~~Iy~ 239 (302)
T 3s25_A 180 A------LFYDCNC----YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--------EANIEH--YNVYGSLIFY 239 (302)
T ss_dssp E------EEECSCE----EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS--------CSCEEE--EEEETTEEEE
T ss_pred E------EEeCCCc----cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe--------CCCcce--EEECCCEEEE
Q ss_pred eecCCCceEEEeeccCCccceeecCCCCceeeec
Q 010784 456 ASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~ 489 (501)
+.....+.|..-++.-..+..++.+.-..+.+++
T Consensus 240 ~~~~~~~~i~~~~~DG~~r~~l~~~~~~~i~i~~ 273 (302)
T 3s25_A 240 QRGGDNPALCVVKNDGTGFKELAKGEFCNINVTS 273 (302)
T ss_dssp EECSSSCEEEEEETTSCCCEEEEESCEEEEEECS
T ss_pred EECCCCcEEEEEECCCCccEEeeCCccceEEEeC
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=40.75 E-value=2.9e+02 Score=27.62 Aligned_cols=99 Identities=4% Similarity=-0.070 Sum_probs=52.4
Q ss_pred EEEEecCCCCCCC-CCCCccc-c-cCcccCeEEEEecCCeEEEEecCCCc--EEEEeCCCcc-cccc-cccCCCCCCCcc
Q 010784 368 AMTWDIRRSQDAV-KPQPMAE-L-DGHVGSVTQLHMDPYKIVTGGRDDLR--INIWETDTGM-LANS-LLCNYPEEADIS 440 (501)
Q Consensus 368 i~iwd~~~~~~~~-~~~~~~~-~-~~h~~~v~~l~~~~~~~l~~gs~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~~~~ 440 (501)
|...|+.++..-. ....... + ......+..+.+..+.++++...++. |.++++.+++ .... +.. . ....
T Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~l---p-~~~~ 397 (711)
T 4hvt_A 322 LVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKL---P-YQNA 397 (711)
T ss_dssp EEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECC---C-STTC
T ss_pred EEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCC---C-CCeE
Confidence 8888887642100 0001122 2 12245678889998877776667765 6677766664 2333 211 1 1234
Q ss_pred eeeeEeecccc-EEEEeec-CCCceEEEeecc
Q 010784 441 TGCSAMAVSGC-RIVTASY-GEPGLLQFRDFS 470 (501)
Q Consensus 441 v~~~~~s~~g~-~l~s~~~-d~~g~i~~w~~~ 470 (501)
+.....++++. ++++.++ ..-+.+..+|+.
T Consensus 398 ~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 398 IFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 55666667765 3333332 245667777765
No 369
>2d96_A Nuclear factor NF-kappa-B P100 subunit; six helix bundle, processing, proteasome, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=13 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc
Q 010784 14 SPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA 54 (501)
Q Consensus 14 ~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~ 54 (501)
+.+...++.||.++..+++.-||..+ ..+-||.++
T Consensus 3 ~~~~~~~~~L~~~~~~kLc~lLD~p~------~~~~Wr~LA 37 (109)
T 2d96_A 3 SGSSGPGLSLGDTALQNLEQLLDGPE------AQGSWAELA 37 (109)
T ss_dssp CSSSSSSCSCCHHHHHHHHHHHSSSS------CSSCHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHcCCCC------CCCCHHHHH
Confidence 34566779999999999999998654 367777776
No 370
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.23 E-value=15 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc
Q 010784 14 SPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA 54 (501)
Q Consensus 14 ~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~ 54 (501)
+.+...++.||..+..++..+|++.+- -+-|+.+|
T Consensus 3 ~~~~~~l~~L~~~~r~kL~~lLd~~~~------~~dWr~LA 37 (100)
T 2dbf_A 3 SGSSGDMKQLAEDVKLQLYKLLEIPDP------DKNWATLA 37 (100)
T ss_dssp CCCCCSCTTSCHHHHHHHHHHHTSCCT------TSSHHHHH
T ss_pred CCCcchhhhCCHHHHHHHHHHhCCCCC------CCCHHHHH
Confidence 456677899999999999999997651 25677776
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.96 E-value=1.2e+02 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=26.7
Q ss_pred cceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 439 ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 439 ~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
..+.+++..++..++++-+ .|+++|+|++.++..
T Consensus 238 ~~~vs~~~~~~~~~lftL~--~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLS--LDYKLKVLDLSTNQC 271 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEB--TTCEEEEEETTTTEE
T ss_pred ceeEEeeccCCccEEEEEe--CCCEEEEEECCCCCe
Confidence 3455667778889999999 669999999876653
No 372
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=31.42 E-value=33 Score=25.42 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=27.1
Q ss_pred CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA 54 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~ 54 (501)
.+-.+...|..||.-+..++..+||+. +.|+.++
T Consensus 10 ~~~~~~~~i~~Lp~~vr~~L~~~LD~~---------~~Wr~LA 43 (127)
T 1wh4_A 10 KPLTPSTYIRNLNVGILRKLSDFIDPQ---------EGWKKLA 43 (127)
T ss_dssp CCCCTTSBGGGSCHHHHHHHHHHHSST---------THHHHHH
T ss_pred CCCCCCchhhhCCHHHHHHHHHHhCCc---------ccHHHHH
Confidence 344556789999999999999999987 5666665
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.90 E-value=4.3e+02 Score=26.37 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=48.0
Q ss_pred CCCeEEEEECCCCcc----ccceecccceecCCCceeeecCCCeEEEEe--CC--cEEEEEcCCCc-eEee-eccC-CCc
Q 010784 279 KDSKVRVWDTSTSSA----VRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GS--SVVTIDLRTMQ-KVMT-PAIC-KPI 347 (501)
Q Consensus 279 ~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~i~~~d~~~~~-~~~~-~~~~-~~~ 347 (501)
..+.|.+.|+.+... ...............+..+.+..+.+++.. ++ .+.++|+.+++ .... +... .+.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~ 397 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNA 397 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTC
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeE
Confidence 467788888876421 011111111122233445556666555543 22 68888887664 2222 2211 345
Q ss_pred EEEEEEcCCC-cEEEEEc-CC--c-EEEEecC
Q 010784 348 LHSFSIMPSK-SLICTGG-IG--K-AMTWDIR 374 (501)
Q Consensus 348 v~~v~~~~~~-~~l~~~~-~d--~-i~iwd~~ 374 (501)
+.....++++ .++++.+ .. . +..+|+.
T Consensus 398 ~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 398 IFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666666665 4444443 22 2 7777765
No 374
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=27.33 E-value=19 Score=25.49 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=25.4
Q ss_pred CCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc
Q 010784 16 STTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA 54 (501)
Q Consensus 16 ~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~ 54 (501)
+....+.||..+..++...||+.+ .+-+-|+.+|
T Consensus 5 ~g~~~~~Lp~~~r~~L~~lLD~~~-----~~g~dWr~LA 38 (103)
T 1wmg_A 5 SSGYAFKIPLSIRQKICSSLDAPN-----SRGNDWRLLA 38 (103)
T ss_dssp ---CCCCCCHHHHHHHHHHHHCGG-----GTTSSHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCcCC-----CCccCHHHHH
Confidence 344578899999999999999866 2366787776
No 375
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=25.86 E-value=55 Score=23.61 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc
Q 010784 13 PSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA 54 (501)
Q Consensus 13 ~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~ 54 (501)
+-.+.+.|..||.-+..+...+||+. ..|+.++
T Consensus 4 ~~~~~~~I~~Lp~~~r~~L~~~LD~~---------~~W~~La 36 (113)
T 2a9i_A 4 PLTPSTYIRNLNVGILRKLSDFIDPQ---------EGWKKLA 36 (113)
T ss_dssp CCCTTSBGGGCCHHHHHHHHHHHSGG---------GHHHHHH
T ss_pred CCCCCCchhhCCHHHHHHHHHHhCCc---------ccHHHHH
Confidence 34457789999999999999999997 4677765
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.18 E-value=83 Score=31.36 Aligned_cols=29 Identities=10% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
+..++++-+.|+++|+|++.+++.+....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 46699999999999999999997655443
No 377
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.10 E-value=4.2e+02 Score=25.00 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred CeEEEEec------CC-eEEEEecCCCcEEEEeCC-Ccc-------cccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 394 SVTQLHMD------PY-KIVTGGRDDLRINIWETD-TGM-------LANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 394 ~v~~l~~~------~~-~~l~~gs~dg~i~iwd~~-~~~-------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
..++|+.+ .. .++..|+.+|.|+=.-+. .+. .+..+.. .....+|..|.+++++.+|.+++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v---~~~~~pI~~m~l~~~~~~Lyv~s- 480 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV---FREPTTISAMELSTKQQQLYIGS- 480 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC---SSSCCCCCEEEEETTTTEEEEEB-
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee---cCCCCccceEEEcCCCCEEEEEE-
Confidence 45666554 23 677778899987544332 221 2222221 11246789999999999999998
Q ss_pred CCCceEEE
Q 010784 459 GEPGLLQF 466 (501)
Q Consensus 459 d~~g~i~~ 466 (501)
+.+.++|
T Consensus 481 -~~~V~~v 487 (495)
T 1q47_A 481 -TAGVAQL 487 (495)
T ss_dssp -SSCEEEE
T ss_pred -CCeEEEE
Confidence 4565554
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=21.60 E-value=4.4e+02 Score=23.57 Aligned_cols=28 Identities=11% Similarity=-0.124 Sum_probs=16.4
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVW 286 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vw 286 (501)
..+.+|.+.|.+...++.+..++.|...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 4577888887444445555544545443
No 379
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.44 E-value=1.5e+02 Score=28.51 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=41.8
Q ss_pred CeEEEEecC--C-eEEEEecCCCcEEEEeCCCcc----cccccccCCCCCCCccee-eeEeeccccEEEEeecCCCceEE
Q 010784 394 SVTQLHMDP--Y-KIVTGGRDDLRINIWETDTGM----LANSLLCNYPEEADISTG-CSAMAVSGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 394 ~v~~l~~~~--~-~~l~~gs~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~s~~~d~~g~i~ 465 (501)
..++|+... + .++..|+.+|.|.-..+.... .+..+.. .....+|. .|.+++++.+|++++ +.+.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v---~~~~~pv~~~l~~~~~~~~Lyv~s--~~~V~k 475 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV---FKDGSPILRDMAFSINQLYLYVMS--ERQVTR 475 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC---CTTCCCCCSCCEECTTSSEEEEEC--SSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe---ecCCCccccceEEccCCCeEEEEe--ccccce
Confidence 356665543 3 777778899987655554221 2222221 11245674 899999999999998 445555
Q ss_pred E
Q 010784 466 F 466 (501)
Q Consensus 466 ~ 466 (501)
+
T Consensus 476 v 476 (539)
T 3al9_A 476 V 476 (539)
T ss_dssp E
T ss_pred e
Confidence 4
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.27 E-value=2.1e+02 Score=27.89 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=32.1
Q ss_pred CceEEeeCCcEEEeecCCe------------eeEEEEecccccccceecccCC-cceeEEEeec
Q 010784 113 HDHILLDNNDIFSTQGSSI------------QNIKIDNFLSESYYRATLSDHK-ARITCMRLFP 163 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d------------~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~ 163 (501)
+.-|+|++.|.++++-..+ ..+.+.+..++ ++.+.+.++. ..++.+.|+|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECT
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECC
Confidence 4668899998877654322 23444455553 5555666654 4699999999
No 381
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.13 E-value=76 Score=18.31 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=19.6
Q ss_pred CCCCCCcccccccHHHHHHHHhcCCh
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNLSL 37 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~ 37 (501)
|+..-..-|..||.||-..|++--..
T Consensus 13 P~~VD~eVF~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 13 PEGVDQEVFKQLPADIQEEILSGKSR 38 (48)
T ss_dssp CTTCCGGGTTTSCHHHHHHHTTCCCS
T ss_pred CCCCCHHHHHHCcHHHHHHHHhcchH
Confidence 45555667888999999999976543
Done!