BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010785
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/409 (52%), Positives = 291/409 (71%), Gaps = 26/409 (6%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 31 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR----- 207
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LR
Sbjct: 91 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQS 429
Q+ +C+SS HFQVAERAL+ WNN++I +LI N ILPI+FP+L RN++ HWN+ +
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 430 LTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIA 478
L N K+F +++ +LF++C +F+ ++ KE+ +RE W ++E +A
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLA 437
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/408 (52%), Positives = 290/408 (71%), Gaps = 26/408 (6%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR----- 207
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LR
Sbjct: 62 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQS 429
Q+ +C+SS HFQVAERAL+ WNN++I +LI N ILPI+FP+L RN++ HWN+ +
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 359
Query: 430 LTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEI 477
L N K+F +++ +LF++C +F+ ++ KE+ +RE W ++E +
Sbjct: 360 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 407
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 287/405 (70%), Gaps = 26/405 (6%)
Query: 97 PNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQ 155
P A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E +
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 156 EMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR-------- 207
E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LR
Sbjct: 61 EVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 118
Query: 208 ---------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRF 252
LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRF
Sbjct: 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178
Query: 253 IFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCI 312
I+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+YC+
Sbjct: 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238
Query: 313 TQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQI 372
QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF Q+
Sbjct: 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 373 GRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTL 432
+C+SS HFQVAERAL+ WNN++I +LI N ILPI+FP+L RN++ HWN+ + L
Sbjct: 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 358
Query: 433 NVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEI 477
N K+F +++ +LF++C +F+ ++ KE+ +RE W ++E +
Sbjct: 359 NALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/378 (53%), Positives = 264/378 (69%), Gaps = 26/378 (6%)
Query: 101 KQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVK 159
++ LF++KL CCV+FDF +DP +LK K++KR L E V+Y++ E + E+V
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 160 MVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR------------ 207
+ N FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LR
Sbjct: 61 XFAVNXFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 118
Query: 208 -----------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFET 256
LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRFI+ET
Sbjct: 119 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 178
Query: 257 EKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFV 316
E HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+YC+ QF+
Sbjct: 179 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL 238
Query: 317 EKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCL 376
EKD L + V+ LLKYWP T+S KEV FL ELEE+L+ +P EF + PLF Q+ +C+
Sbjct: 239 EKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCV 298
Query: 377 SSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRK 436
SS HFQVAERAL+ WNN++I +LI N ILPI FP+L RN++ HWN+ + L N K
Sbjct: 299 SSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALK 358
Query: 437 IFSDIDPELFEECLLKFQ 454
+F + + +LF++C +F+
Sbjct: 359 LFXEXNQKLFDDCTQQFK 376
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 255/351 (72%), Gaps = 26/351 (7%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 43 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 102
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR----- 207
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LR
Sbjct: 103 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 160
Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 161 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 220
Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 221 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 280
Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 340
Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNAR 420
Q+ +C+SS HFQVAERAL+ WNN++I +LI N ILPI+FP+L RN++
Sbjct: 341 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 352 VLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIK-----QNRKV 406
V E +P E R + +F G+ L++ +++ER + LW+ H+E + + V
Sbjct: 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270
Query: 407 ILPIIFP 413
+LP P
Sbjct: 271 LLPFFDP 277
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 422 HWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKR 473
H+NQ ++ TL P +EECL Q K E K +E WK+
Sbjct: 955 HFNQKLEGFTL----------PRCWEECLASSQYHARKSEVDKFNKENCWKK 996
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 422 HWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKR 473
H+NQ ++ TL P +EECL Q K E K +E WK+
Sbjct: 955 HFNQKLEGFTL----------PRCWEECLASSQYHARKSEVDKFNKENCWKK 996
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 352 VLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIK-----QNRKV 406
V E +P E R + +F G+ L++ +++ER + LW+ H+E + + V
Sbjct: 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270
Query: 407 ILPIIFP 413
+LP P
Sbjct: 271 LLPFFDP 277
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 388 LFLWNNDHIENLIKQNRKVILP 409
LFLW++ +E L++ NRKV++P
Sbjct: 144 LFLWDSKELEQLVEFNRKVVIP 165
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 176 NKVLEAFDLEEEEPSMDPAWP----HLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRI 230
+ LE F + ++DPAWP Q + EFL RL L +S+ + + L+++L +
Sbjct: 275 GEALEGFS---QAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSL 330
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 170 TSPPRENKVLEAFDLEEEEPSMDPAW 195
TS P ++EA E +P +DPAW
Sbjct: 792 TSQPCLGSIVEALSGSERDPGLDPAW 817
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 170 TSPPRENKVLEAFDLEEEEPSMDPAW 195
TS P ++EA E +P +DPAW
Sbjct: 792 TSQPCLGSIVEALSGSERDPGLDPAW 817
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 422 HWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKR 473
H+NQ ++ TL P ++EC+ Q K E K RE WK+
Sbjct: 954 HFNQKLEGFTL----------PRCWDECIASSQYLARKREVEKFNRENCWKK 995
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 422 HWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKR 473
H+NQ ++ TL P ++EC+ Q K E K RE WK+
Sbjct: 954 HFNQKLEGFTL----------PRCWDECIASSQYLARKREVEKFNRENCWKK 995
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,403,832
Number of Sequences: 62578
Number of extensions: 516996
Number of successful extensions: 1227
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 19
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)