Query 010785
Match_columns 501
No_of_seqs 187 out of 305
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 1E-158 2E-163 1214.3 37.4 395 84-482 39-456 (457)
2 PF01603 B56: Protein phosphat 100.0 8E-127 2E-131 1000.8 27.5 386 89-479 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 1.8E-40 3.8E-45 311.6 13.8 134 317-483 35-168 (170)
4 PLN00122 serine/threonine prot 97.2 0.0027 5.9E-08 60.7 9.7 26 84-109 42-67 (170)
5 PF01602 Adaptin_N: Adaptin N 90.1 2.6 5.7E-05 45.2 11.2 174 206-392 342-520 (526)
6 PF05918 API5: Apoptosis inhib 89.0 7 0.00015 44.1 13.7 240 129-391 37-340 (556)
7 PF12348 CLASP_N: CLASP N term 73.6 15 0.00032 35.3 7.8 104 337-443 19-126 (228)
8 KOG1060 Vesicle coat complex A 69.2 77 0.0017 37.6 13.1 154 279-453 316-471 (968)
9 PF01602 Adaptin_N: Adaptin N 69.2 1.7E+02 0.0037 31.5 16.3 168 206-390 45-215 (526)
10 PF14500 MMS19_N: Dos2-interac 65.8 1.4E+02 0.0029 30.6 13.1 166 210-386 6-208 (262)
11 KOG2171 Karyopherin (importin) 55.8 4.6E+02 0.01 32.4 16.7 226 194-439 115-417 (1075)
12 PF01417 ENTH: ENTH domain; I 51.5 61 0.0013 28.8 7.0 91 349-440 24-121 (125)
13 COG5656 SXM1 Importin, protein 46.1 5E+02 0.011 31.1 14.5 188 192-419 333-551 (970)
14 PF04388 Hamartin: Hamartin pr 43.5 4.5E+02 0.0098 30.6 14.0 149 206-376 7-161 (668)
15 PF14911 MMS22L_C: S-phase gen 37.3 4.6E+02 0.01 28.5 12.0 284 132-477 64-371 (373)
16 PF08767 CRM1_C: CRM1 C termin 36.4 4.9E+02 0.011 27.2 11.9 129 241-391 43-189 (319)
17 KOG0949 Predicted helicase, DE 35.4 3.2E+02 0.0069 33.7 11.1 103 369-479 804-915 (1330)
18 PF12755 Vac14_Fab1_bd: Vacuol 34.8 1.6E+02 0.0035 25.6 6.8 72 358-439 22-96 (97)
19 PF08389 Xpo1: Exportin 1-like 33.9 2.7E+02 0.0059 24.2 8.4 103 322-437 8-112 (148)
20 KOG2274 Predicted importin 9 [ 32.6 7.1E+02 0.015 30.4 13.2 109 366-484 127-241 (1005)
21 PF15611 EH_Signature: EH_Sign 30.7 6.4E+02 0.014 26.3 11.9 94 357-477 185-280 (389)
22 PF12783 Sec7_N: Guanine nucle 29.7 3.2E+02 0.007 25.3 8.4 109 343-455 40-160 (168)
23 PF06757 Ins_allergen_rp: Inse 29.2 2.9E+02 0.0062 26.3 8.2 55 346-402 104-164 (179)
24 TIGR00777 ahpD alkylhydroperox 29.0 55 0.0012 32.0 3.2 14 243-256 77-90 (177)
25 cd03567 VHS_GGA VHS domain fam 28.4 4.2E+02 0.009 24.6 8.8 79 312-390 25-110 (139)
26 PF12783 Sec7_N: Guanine nucle 27.5 1.9E+02 0.0041 26.8 6.5 40 262-301 90-129 (168)
27 PF12460 MMS19_C: RNAPII trans 26.7 8.2E+02 0.018 26.2 17.1 294 130-448 87-402 (415)
28 PTZ00429 beta-adaptin; Provisi 25.1 1.2E+03 0.026 27.7 17.7 161 213-391 378-541 (746)
29 smart00582 RPR domain present 24.7 1.1E+02 0.0024 26.7 4.1 73 322-394 29-108 (121)
30 cd08324 CARD_NOD1_CARD4 Caspas 22.5 72 0.0016 27.7 2.4 36 206-241 49-84 (85)
31 cd03571 ENTH_epsin ENTH domain 22.5 2.2E+02 0.0047 26.0 5.7 89 349-440 22-118 (123)
32 cd03572 ENTH_epsin_related ENT 22.2 6.1E+02 0.013 23.2 8.6 88 346-440 22-119 (122)
33 PF10508 Proteasom_PSMB: Prote 22.0 9.3E+02 0.02 26.7 11.6 108 366-479 118-231 (503)
34 KOG2137 Protein kinase [Signal 21.8 1.4E+03 0.03 27.1 14.2 108 323-439 350-457 (700)
35 KOG2175 Protein predicted to b 21.5 1.2E+03 0.026 26.3 12.0 154 276-451 80-253 (458)
36 smart00313 PXA Domain associat 20.7 7.2E+02 0.016 23.5 10.0 32 322-354 11-42 (176)
37 PF02561 FliS: Flagellar prote 20.7 4.4E+02 0.0096 23.3 7.2 70 192-276 46-115 (122)
38 PF14724 mit_SMPDase: Mitochon 20.4 5.9E+02 0.013 30.4 9.8 115 324-443 371-530 (765)
39 PF13019 Telomere_Sde2: Telome 20.3 1.5E+02 0.0031 28.7 4.2 29 451-479 132-161 (162)
40 COG5215 KAP95 Karyopherin (imp 20.3 3.7E+02 0.008 31.3 7.8 105 366-480 262-389 (858)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-158 Score=1214.34 Aligned_cols=395 Identities=70% Similarity=1.156 Sum_probs=389.2
Q ss_pred CcccccCCCCCCCChHHhHHHHHHHHhcCccceeccCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010785 84 LAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSA 163 (501)
Q Consensus 84 ~~~l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~ 163 (501)
+.++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++||.+|+++++|+++
T Consensus 39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~ 118 (457)
T KOG2085|consen 39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV 118 (457)
T ss_pred CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHH
Q 010785 164 NLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPRER 220 (501)
Q Consensus 164 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRER 220 (501)
||||+|||..++++ +|+|||||++|++|||||+|||+| ++||+||||||||||
T Consensus 119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 99999999987653 899999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCc
Q 010785 221 EYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKC 300 (501)
Q Consensus 221 d~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~ 300 (501)
|||||+|||||||||+||+||||+||||||+||||||+|||||||||||||||||||+|||||||+||.||||||||+|+
T Consensus 195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~ 274 (457)
T KOG2085|consen 195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS 274 (457)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCc
Q 010785 301 VAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSH 380 (501)
Q Consensus 301 l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~h 380 (501)
++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+|||+|||+|++|+|
T Consensus 275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H 354 (457)
T KOG2085|consen 275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH 354 (457)
T ss_pred ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 010785 381 FQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKE 460 (501)
Q Consensus 381 fQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~ 460 (501)
|||||||||+||||||++||++|+++|+|||||+||+|+++|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus 355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 010785 461 EEIKMKREATWKRLEEIAAMKA 482 (501)
Q Consensus 461 ~~~~~~r~~~W~~le~~A~~~~ 482 (501)
++.+++|+++|++||++|+.++
T Consensus 435 ~~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 435 KETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998765
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=8e-127 Score=1000.76 Aligned_cols=386 Identities=62% Similarity=1.082 Sum_probs=341.9
Q ss_pred cCCCCCCCChHHhHHHHHHHHhcCccceeccCCCCCchhhHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHhhc
Q 010785 89 ALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSAN--GKFPEVVMQEMVKMVSANLF 166 (501)
Q Consensus 89 ~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~KeiKr~tL~ELvd~v~~~~--~~lte~i~~~i~~Mvs~NiF 166 (501)
+||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++||++++ +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred cCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH---------------------HHHHhcCCCCChhHHHHHHH
Q 010785 167 RTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL---------------------LRLLDLFDSEDPREREYLKT 225 (501)
Q Consensus 167 R~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil---------------------l~LL~LFdSeDpRERd~LKt 225 (501)
|++||.+.. .+|+|||+|+.||+|||||+||++| .+|+++|+|+||||||+||+
T Consensus 81 R~lP~~~~~-----~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~ 155 (409)
T PF01603_consen 81 RPLPPIPNP-----SFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKT 155 (409)
T ss_dssp S-----SS-------S-GGG------TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHH
T ss_pred CCCCCcccc-----cCCccccccccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999998753 3789999999999999999999999 68999999999999999999
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccccch
Q 010785 226 VLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYH 305 (501)
Q Consensus 226 iLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh 305 (501)
+||||||||+++|+|||++|+|+|++|+||+++|+||+|||||||||||||++|||+||+.||.++|+|||++++++.||
T Consensus 156 ~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~ 235 (409)
T PF01603_consen 156 ILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYH 235 (409)
T ss_dssp HHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHH
Q 010785 306 QQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAE 385 (501)
Q Consensus 306 ~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAE 385 (501)
+||+||++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|++++.|||++||+|++|+||||||
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 386 RALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKM 465 (501)
Q Consensus 386 RAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~ 465 (501)
|||++|||++|++++++|++.|+|+|+|+|++++++|||++||++|++|+++||||||++|++|+++|+++++++++.++
T Consensus 316 rAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~~ 395 (409)
T PF01603_consen 316 RALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAREK 395 (409)
T ss_dssp HHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 010785 466 KREATWKRLEEIAA 479 (501)
Q Consensus 466 ~r~~~W~~le~~A~ 479 (501)
+|+++|++|+++|+
T Consensus 396 ~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 396 KRKKKWKKIEEAAK 409 (409)
T ss_dssp HHHHHHTT-S----
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.8e-40 Score=311.62 Aligned_cols=134 Identities=65% Similarity=0.971 Sum_probs=130.3
Q ss_pred HhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhH
Q 010785 317 EKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHI 396 (501)
Q Consensus 317 eKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i 396 (501)
...+.++...+++|++|||++++.||.+||++| |||||||+||||||
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 456889999999999999999999999999999 99999999999999
Q ss_pred HHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 397 ENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEE 476 (501)
Q Consensus 397 ~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~le~ 476 (501)
++||.+|+++|||||||+|++|+++|||++||++++||+||||||||+||++|+++|+++++++++.+++|+++|++||+
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 010785 477 IAAMKAA 483 (501)
Q Consensus 477 ~A~~~~~ 483 (501)
+|++++.
T Consensus 162 ~A~~~~~ 168 (170)
T PLN00122 162 AAAAKAI 168 (170)
T ss_pred HHHhccC
Confidence 9998874
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.15 E-value=0.0027 Score=60.71 Aligned_cols=26 Identities=81% Similarity=1.224 Sum_probs=25.0
Q ss_pred CcccccCCCCCCCChHHhHHHHHHHH
Q 010785 84 LAYYEALPSFKDVPNAEKQNLFVRKL 109 (501)
Q Consensus 84 ~~~l~~LP~l~dv~~~e~~~Lf~~Kl 109 (501)
...+++||+|+|||.++|+.||++||
T Consensus 42 ~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 42 VAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred ccccccccCCCCCCchHHHHHHHHHH
Confidence 67789999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.10 E-value=2.6 Score=45.19 Aligned_cols=174 Identities=15% Similarity=0.175 Sum_probs=115.6
Q ss_pred HHHHhcC-CCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHH
Q 010785 206 LRLLDLF-DSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEH 284 (501)
Q Consensus 206 l~LL~LF-dSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEH 284 (501)
..|+.-+ +..|+.-|..+-..+..+-.++...-.|.-..+-+++.. ... .-..|+...+..++... ..+++.-
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~~~-~~~~~~~~~i~~ll~~~-~~~~~~~ 415 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----SGD-YVSNEIINVIRDLLSNN-PELREKI 415 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----TGG-GCHCHHHHHHHHHHHHS-TTTHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----ccc-cccchHHHHHHHHhhcC-hhhhHHH
Confidence 3455566 566887777777777888888877777766665555431 111 12456666666666553 2233332
Q ss_pred HHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcc--cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHH
Q 010785 285 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCK--LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQ 362 (501)
Q Consensus 285 k~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~--La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~ 362 (501)
...|.+ +...-.....-.-..+|+-+|.+..+. .+..+++.+...|...+..=+...|..+..+....+..+-.
T Consensus 416 l~~L~~----~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~ 491 (526)
T PF01602_consen 416 LKKLIE----LLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ 491 (526)
T ss_dssp HHHHHH----HHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH
T ss_pred HHHHHH----HHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH
Confidence 222222 222233334577889999999888877 88899999999998887777777888888888776655554
Q ss_pred hhhHHHHHHHHHHhC--CCcHHHHHHHHhhhc
Q 010785 363 RCMVPLFHQIGRCLS--SSHFQVAERALFLWN 392 (501)
Q Consensus 363 ~i~~pLF~~la~Ci~--S~hfQVAERAL~~Wn 392 (501)
+ .+...+.++.. |.++.|-+||.++|.
T Consensus 492 ~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 492 N---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp H---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3 45666666667 999999999999985
No 6
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.02 E-value=7 Score=44.07 Aligned_cols=240 Identities=16% Similarity=0.253 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-------HHhhccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHH
Q 010785 129 DIKRQTLVELVDYVSSANGKFPEVVMQEMVKMV-------SANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVV 201 (501)
Q Consensus 129 eiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mv-------s~NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlV 201 (501)
+.|+-+=+=|-.|+..- ..+.++++..+++.| .+.-+|.||..-+.+ =.|+.=|
T Consensus 37 k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------------------~~~v~kv 97 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------------------PEHVSKV 97 (556)
T ss_dssp HHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------------------T-HHHH
T ss_pred HHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------------------HHHHhHH
Confidence 35555555555555432 235666676666654 567777888654422 1367777
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHhhccc--CChH---HHH------HHHHHHHhhhhcc---------------
Q 010785 202 YEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFM--VHRP---FIR------KAINNIFYRFIFE--------------- 255 (501)
Q Consensus 202 Yeill~LL~LFdSeDpRERd~LKtiLHriYgKf~--~~R~---fIR------k~Innif~~fiyE--------------- 255 (501)
-++|.+| +.++|+.|++.++..|..+|.-=. .+.. .|. ..+..-...||.+
T Consensus 98 aDvL~Ql---L~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 98 ADVLVQL---LQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp HHHHHHH---TT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred HHHHHHH---HhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 7876665 459999999999998866653100 0000 011 0011111222211
Q ss_pred cCCCCCHHHH-----------HHHHHHHHcccCC---CcHHHHHHHHHHHhh---cCCCC--CccccchHHHHHHHHH--
Q 010785 256 TEKHNGIAEL-----------LEILGSIINGFAL---PLKEEHKLFLVRALI---PLHKP--KCVAMYHQQLSYCITQ-- 314 (501)
Q Consensus 256 te~~nGIaEL-----------LeIlgSIInGFal---PLKeEHk~Fl~rvLi---PLHk~--k~l~~Yh~qL~yCi~q-- 314 (501)
+|.|- +.++ .+++-+|.+.+.+ .=-.+..+.|..++. =|-.+ .+-...-.+|.+|+.+
T Consensus 175 ~e~~i-~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 175 MEEFI-VDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp HHHHH-HHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHG
T ss_pred HHHHH-HHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 11111 1222 2233344444332 112344444444433 12222 0111344567788877
Q ss_pred -HHHhCcc---cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhC------CCcHHHH
Q 010785 315 -FVEKDCK---LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLS------SSHFQVA 384 (501)
Q Consensus 315 -FveKDp~---La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~------S~hfQVA 384 (501)
|..+... +...+.+.+|-.|=.......+-+|.-+-|+...+.+.+-..++.++|..|-.++= +.+|-..
T Consensus 254 p~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~v 333 (556)
T PF05918_consen 254 PFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYV 333 (556)
T ss_dssp GG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHH
T ss_pred HHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHh
Confidence 6655543 33445555555555566688899999999999999888888889999999865543 4567777
Q ss_pred HHHHhhh
Q 010785 385 ERALFLW 391 (501)
Q Consensus 385 ERAL~~W 391 (501)
|..||.+
T Consensus 334 EcLL~af 340 (556)
T PF05918_consen 334 ECLLYAF 340 (556)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8777655
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=73.63 E-value=15 Score=35.32 Aligned_cols=104 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCchHHhHHHHHHHHHHhcC----ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccch
Q 010785 337 TNSTKEVMFLGELEEVLEST----QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIF 412 (501)
Q Consensus 337 tns~KEv~FL~EleeILe~~----~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~ 412 (501)
.+=.+.+-=|..|..++..- .+..|...+..+...|+.|+++...+|+-.|+.++. .+.......-+..+..++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~--~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLS--DLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHH--HHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhHhHHHHHHHHH
Confidence 34455566677888887654 234444444455569999999999999999998774 344445555555567788
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhCH
Q 010785 413 PALERNARKHWNQAVQSLTLNVRKIFSDIDP 443 (501)
Q Consensus 413 paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~ 443 (501)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8886654432 78899999998888887666
No 8
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=77 Score=37.58 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhH--HHHHHHHHHhcC
Q 010785 279 PLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVM--FLGELEEVLEST 356 (501)
Q Consensus 279 PLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~--FL~EleeILe~~ 356 (501)
|.-+.|+. .+.|+-|...+.-..| -+..||-++..|+|+|.++-++.. .=.+.-+-++- =|+-|..++
T Consensus 316 P~~~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lKsF---fv~ssDp~~vk~lKleiLs~La--- 385 (968)
T KOG1060|consen 316 PKNQVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLKSF---FVRSSDPTQVKILKLEILSNLA--- 385 (968)
T ss_pred CHHHHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhhce---EeecCCHHHHHHHHHHHHHHHh---
Confidence 44455655 7888888887777777 467889999999999999987754 34444444443 333333333
Q ss_pred ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHH
Q 010785 357 QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRK 436 (501)
Q Consensus 357 ~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk 436 (501)
..... .-+|+-+-.-|.|+|++||-.|..- +.....+...+-+-.+..|..-.++| +..|..-+.+|+|
T Consensus 386 ~esni----~~ILrE~q~YI~s~d~~faa~aV~A------iGrCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk 454 (968)
T KOG1060|consen 386 NESNI----SEILRELQTYIKSSDRSFAAAAVKA------IGRCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIK 454 (968)
T ss_pred hhccH----HHHHHHHHHHHhcCchhHHHHHHHH------HHHHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHH
Confidence 22222 3477888888999999988777532 23344444555555667777777788 9999999999999
Q ss_pred HHHhhCHHHHHHHHHHH
Q 010785 437 IFSDIDPELFEECLLKF 453 (501)
Q Consensus 437 ~l~e~D~~lf~~~~~~~ 453 (501)
+|..+||.--.+...+.
T Consensus 455 ~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 455 RLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHhhChHHHHHHHHHH
Confidence 99999998777766544
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=69.16 E-value=1.7e+02 Score=31.47 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=96.7
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHK 285 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk 285 (501)
...+.++.|.|..+|-..=-.+..+.. .-+-.-..+.|.+.+=+-. ....-.+-.|..+++|.+ +|..
T Consensus 45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~-------~~~~ 112 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILIINSLQKDLNS-PNPYIRGLALRTLSNIRT-------PEMA 112 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-S-------HHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhcc-------cchh
Confidence 457888889999877666555555554 3333333333344433321 122224566889999874 5555
Q ss_pred HHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHH-HHHHhhccCCCCCchHHhH--HHHHHHHHHhcCChhhHH
Q 010785 286 LFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADT-VIRGLLKYWPVTNSTKEVM--FLGELEEVLESTQPGEFQ 362 (501)
Q Consensus 286 ~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~-vi~gLLk~WP~tns~KEv~--FL~EleeILe~~~~~eF~ 362 (501)
.-+...+..+...+.-. =-.-=+.|+..+..++|.+... ++..+.+.==-++ -.|+ =+.-+.+| ..++..+.
T Consensus 113 ~~l~~~v~~ll~~~~~~-VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i--~~~~~~~~ 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPY-VRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEI--KCNDDSYK 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHH--HCTHHHHT
T ss_pred hHHHHHHHHHhcCCchH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHH--ccCcchhh
Confidence 55666666666655441 2333467889999999999765 4555544331111 1222 11112222 35666666
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHhh
Q 010785 363 RCMVPLFHQIGRCLSSSHFQVAERALFL 390 (501)
Q Consensus 363 ~i~~pLF~~la~Ci~S~hfQVAERAL~~ 390 (501)
.+..+++++|.+++.+++-.+-..++.+
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 8888899999988777666555544443
No 10
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.82 E-value=1.4e+02 Score=30.58 Aligned_cols=166 Identities=20% Similarity=0.292 Sum_probs=86.7
Q ss_pred hcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhccc-CCCCCHHHHHHHHHHHHcccCCCcHHHHHHHH
Q 010785 210 DLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFET-EKHNGIAELLEILGSIINGFALPLKEEHKLFL 288 (501)
Q Consensus 210 ~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEt-e~~nGIaELLeIlgSIInGFalPLKeEHk~Fl 288 (501)
+-+-|+|+..|..--..|..+-++..... .=++.+ +.+..|.... +.+.++.+.|.-+.++++-=..+ ++.....+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev-~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-~~~~~~i~ 82 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEV-QVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-PESAVKIL 82 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHH-HHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-hhhHHHHH
Confidence 34568888888766555555555444221 223333 2334443322 55666766677776666321111 11111111
Q ss_pred HHHhhcCCCCC-----------------------ccccchHHHHHHHHHHH--HhCcc---cHHHHHHHhhccCCCCCch
Q 010785 289 VRALIPLHKPK-----------------------CVAMYHQQLSYCITQFV--EKDCK---LADTVIRGLLKYWPVTNST 340 (501)
Q Consensus 289 ~rvLiPLHk~k-----------------------~l~~Yh~qL~yCi~qFv--eKDp~---La~~vi~gLLk~WP~tns~ 340 (501)
+.++--..++ .+......+.+.+++.+ ||||. ++..+++.+++.||. .
T Consensus 83 -~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~-- 158 (262)
T PF14500_consen 83 -RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S-- 158 (262)
T ss_pred -HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c--
Confidence 1111111111 11223345667777775 89995 456788999999994 2
Q ss_pred HHhHHHHHHHHHHhcCChhhHH--------hhhHHHHHHHHHHhCCCcHHHHHH
Q 010785 341 KEVMFLGELEEVLESTQPGEFQ--------RCMVPLFHQIGRCLSSSHFQVAER 386 (501)
Q Consensus 341 KEv~FL~EleeILe~~~~~eF~--------~i~~pLF~~la~Ci~S~hfQVAER 386 (501)
-|..|+-+++..-=|-.|. -...-|=..|-.|+.|.+ ..|+-
T Consensus 159 ---~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~ 208 (262)
T PF14500_consen 159 ---EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPF 208 (262)
T ss_pred ---hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHH
Confidence 3455555666422222222 224568889999999855 33443
No 11
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.84 E-value=4.6e+02 Score=32.35 Aligned_cols=226 Identities=23% Similarity=0.313 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Q 010785 194 AWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSI 272 (501)
Q Consensus 194 aWpHLqlVYeill~LL~LFdSeDpRERd~LKtiLHriYgKf~~-~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSI 272 (501)
.||-|- .-|.....|+|+..|+.---||..+-.-|.. ..++|+. +-.+|.+-+-+....--|+ -+.-+|++
T Consensus 115 ~WPell------~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~-l~~lf~q~~~d~s~~vr~~-a~rA~~a~ 186 (1075)
T KOG2171|consen 115 KWPELL------QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD-LLRLFSQTMTDPSSPVRVA-AVRALGAF 186 (1075)
T ss_pred chHHHH------HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH-HHHHHHHhccCCcchHHHH-HHHHHHHH
Confidence 699652 3367778999999999877666655544443 3345655 5567777765543332122 23344443
Q ss_pred HcccCCCc---HHHHHHHHHHHhhc--CCCCCccccc-----hHHHHHHHHHHHHhCcccHHHHHH--------------
Q 010785 273 INGFALPL---KEEHKLFLVRALIP--LHKPKCVAMY-----HQQLSYCITQFVEKDCKLADTVIR-------------- 328 (501)
Q Consensus 273 InGFalPL---KeEHk~Fl~rvLiP--LHk~k~l~~Y-----h~qL~yCi~qFveKDp~La~~vi~-------------- 328 (501)
+ .=+ |.+++.| +.++| |+-.+.+..+ -+....|...|++-+|++..+.+.
T Consensus 187 ~----~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~ 260 (1075)
T KOG2171|consen 187 A----EYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE 260 (1075)
T ss_pred H----HHhccchHHHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc
Confidence 3 333 6677776 77777 2222222222 245566777777777777655333
Q ss_pred --------------HhhccCCCCCchHHhHHHHHHHHHHhc----------------CChhhH-----------------
Q 010785 329 --------------GLLKYWPVTNSTKEVMFLGELEEVLES----------------TQPGEF----------------- 361 (501)
Q Consensus 329 --------------gLLk~WP~tns~KEv~FL~EleeILe~----------------~~~~eF----------------- 361 (501)
.+.+|=|..+ .|.-.++..|-.++-. ++.+++
T Consensus 261 l~~~~R~~ALe~ivs~~e~Ap~~~-k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 261 LENSIRHLALEFLVSLSEYAPAMC-KKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH 339 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHh-hhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence 3334433221 2222244433333211 111110
Q ss_pred ---HhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc--chhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHH
Q 010785 362 ---QRCMVPLFHQIGRCLSSSHFQVAERALFLWN--NDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRK 436 (501)
Q Consensus 362 ---~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn--Ne~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk 436 (501)
..+..|+|..+-.-+.|+..+-=.+||.-.. -|.--..+..+-..|+|++.+.|... ++.||..|+|++-
T Consensus 340 L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp-----hprVr~AA~naig 414 (1075)
T KOG2171|consen 340 LGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP-----HPRVRYAALNAIG 414 (1075)
T ss_pred CChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHH
Confidence 1456778888888888877664444444332 24445566677788888888888665 6899999999987
Q ss_pred HHH
Q 010785 437 IFS 439 (501)
Q Consensus 437 ~l~ 439 (501)
.+.
T Consensus 415 Q~s 417 (1075)
T KOG2171|consen 415 QMS 417 (1075)
T ss_pred hhh
Confidence 654
No 12
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=51.53 E-value=61 Score=28.84 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=60.0
Q ss_pred HHHHHhcC-ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHHhccccccccchHHHHHhhhh
Q 010785 349 LEEVLEST-QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN------NDHIENLIKQNRKVILPIIFPALERNARK 421 (501)
Q Consensus 349 leeILe~~-~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn------Ne~i~~li~~n~~~IlPii~paL~~~s~~ 421 (501)
+.+|...+ +..++..|+.-|.+||.. ....+..+.-.||.+.. ++.|+.-+..+...|-..--=......-.
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 34555555 558888988888888743 35577788888887753 56777777666665555421111111224
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 010785 422 HWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 422 HWn~~V~~l~~nvlk~l~e 440 (501)
.|...||..|..++.++.|
T Consensus 103 d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 103 DQGQNVREKAKEILELLND 121 (125)
T ss_dssp BHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999875
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=46.14 E-value=5e+02 Score=31.15 Aligned_cols=188 Identities=23% Similarity=0.369 Sum_probs=92.0
Q ss_pred CCCC----chHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccC--
Q 010785 192 DPAW----PHLQVVYEFL--------LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETE-- 257 (501)
Q Consensus 192 epaW----pHLqlVYeil--------l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte-- 257 (501)
+.-| ||||++.+=+ .+=.++|+ -||.| .+||.|.-| |.+.+-..+..++-++.-+.
T Consensus 333 d~tw~l~ePhlq~ii~~vIfPllc~see~eElfE-nDp~e------yirry~df~---d~g~spdlaal~fl~~~~sKrk 402 (970)
T COG5656 333 DQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFE-NDPDE------YIRRYYDFF---DNGLSPDLAALFFLIISKSKRK 402 (970)
T ss_pred HhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHh-cCHHH------HHHHhcchh---cCCCChhHHHHHHHHHHhcccc
Confidence 4456 5888887644 12233332 45655 567777643 22344445555666666553
Q ss_pred --CCCCHHHHHHHHHHHHcccCC-------CcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHH
Q 010785 258 --KHNGIAELLEILGSIINGFAL-------PLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIR 328 (501)
Q Consensus 258 --~~nGIaELLeIlgSIInGFal-------PLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~ 328 (501)
.++| +|+.+.||.+|++. |.++|--.++ |+-... |+.|+..++...=+
T Consensus 403 e~Tfqg---iLsf~~sil~qsaa~psn~dnarq~egalr~-------------------lasi~s-~itk~sp~an~me~ 459 (970)
T COG5656 403 EETFQG---ILSFLLSILGQSAATPSNIDNARQAEGALRL-------------------LASIKS-FITKMSPAANVMEY 459 (970)
T ss_pred hhhhhh---HHHHHHHHHhcccCCCCccccHHHHhhHHHH-------------------HHHHHH-HhccCchHHHHHHH
Confidence 2555 67788888888754 2333433332 222223 66676666665555
Q ss_pred HhhccCC-CCCchHHhHHHH-HHHHHHhcCChhhHH--hhhHHHHHHHHHHhCCCcHHHH-HHHH---hhhcchhHHHHH
Q 010785 329 GLLKYWP-VTNSTKEVMFLG-ELEEVLESTQPGEFQ--RCMVPLFHQIGRCLSSSHFQVA-ERAL---FLWNNDHIENLI 400 (501)
Q Consensus 329 gLLk~WP-~tns~KEv~FL~-EleeILe~~~~~eF~--~i~~pLF~~la~Ci~S~hfQVA-ERAL---~~WnNe~i~~li 400 (501)
.++.|== --. -..+||. --=+++..+ .++|. .+..-+|.-.-.|+.+.|.-|- |+|| ++.-|+.+-..+
T Consensus 460 fiv~hv~P~f~--s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 460 FIVNHVIPAFR--SNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHHHhhHhhc--CcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHH
Confidence 5554421 111 1123332 111122222 23443 2344567777788888776553 2332 233344443333
Q ss_pred HhccccccccchHHHHHhh
Q 010785 401 KQNRKVILPIIFPALERNA 419 (501)
Q Consensus 401 ~~n~~~IlPii~paL~~~s 419 (501)
+++ +|.++..|..-+
T Consensus 537 sah----Vp~tmekLLsLS 551 (970)
T COG5656 537 SAH----VPETMEKLLSLS 551 (970)
T ss_pred Hhh----hhHHHHHHHHhc
Confidence 332 344455554443
No 14
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=43.52 E-value=4.5e+02 Score=30.57 Aligned_cols=149 Identities=25% Similarity=0.317 Sum_probs=80.1
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHK 285 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk 285 (501)
.+|+.+++|.|..+.+.+|..+++..+. ..-+|+ + |.+..|..+| |-.-.++||.++ --| -+|
T Consensus 7 ~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l---~-~~l~~y~~~t----~s~~~~~il~~~----~~P---~~K 69 (668)
T PF04388_consen 7 TELLSLLESNDLSVLEEIKALLQELLNS--DREPWL---V-NGLVDYYLST----NSQRALEILVGV----QEP---HDK 69 (668)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHH---H-HHHHHHHhhc----CcHHHHHHHHhc----CCc---cHH
Confidence 4689999999999999999999998875 333454 2 3344454554 344477777643 223 234
Q ss_pred HHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHH-----HHHHhhccCCCCCchHHh-HHHHHHHHHHhcCChh
Q 010785 286 LFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADT-----VIRGLLKYWPVTNSTKEV-MFLGELEEVLESTQPG 359 (501)
Q Consensus 286 ~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~-----vi~gLLk~WP~tns~KEv-~FL~EleeILe~~~~~ 359 (501)
.||-++==-+.++ .|--+.......||.++|.-.-. ++.-|||.==..++.=-| .=|.-|--+|+.+ |.
T Consensus 70 ~~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i-p~ 144 (668)
T PF04388_consen 70 HLFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI-PS 144 (668)
T ss_pred HHHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc-cc
Confidence 5544321122222 24444455556677766643322 222333222222222111 1233344455555 34
Q ss_pred hHHhhhHHHHHHHHHHh
Q 010785 360 EFQRCMVPLFHQIGRCL 376 (501)
Q Consensus 360 eF~~i~~pLF~~la~Ci 376 (501)
.......-||..++|.+
T Consensus 145 ~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55666667777777776
No 15
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=37.28 E-value=4.6e+02 Score=28.50 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCccc-------ccCC-CCCCCCCCCCCCchHHHHHH
Q 010785 132 RQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVL-------EAFD-LEEEEPSMDPAWPHLQVVYE 203 (501)
Q Consensus 132 r~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~NiFR~lPp~~~~~~~~-------~~~d-~eedep~~epaWpHLqlVYe 203 (501)
.+++.++..||...-..-+.+...-++.|+.+=+.-.-|-....++.. +.+= |-.--+=.++.=++++.+-+
T Consensus 64 ~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k 143 (373)
T PF14911_consen 64 LEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRK 143 (373)
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHH
Confidence 566777777777765666888999999999875554433222111100 0000 00000000222346666666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHH
Q 010785 204 FLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEE 283 (501)
Q Consensus 204 ill~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeE 283 (501)
.|-.+++=+.+-+.|.=.||+..|..| |...+-+|...+..--+.+ +. -.+-+..|-.++
T Consensus 144 ~lpl~lqGl~~~~~~~dayL~~~l~~i--------------i~~y~~~Fl~~~~~~~~~~-----l~-~~~~~~~~~~~~ 203 (373)
T PF14911_consen 144 SLPLFLQGLGRLSQRQDAYLNQQLRNI--------------IQQYLPRFLPASPSKLVAR-----LS-TLLSAFTPRNEE 203 (373)
T ss_pred HHHHHHHHHHhcccccChHHHHHHHHH--------------HHHHHhHhccCCCcccccc-----cc-ccccchhhhhhH
Confidence 663333322222222223444443333 2334445555443322222 11 223344555555
Q ss_pred HHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHH----hcCChh
Q 010785 284 HKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVL----ESTQPG 359 (501)
Q Consensus 284 Hk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeIL----e~~~~~ 359 (501)
-+.|...+ ...+|++-+. .=|..+...=+.||.|+-+=+ +.....
T Consensus 204 l~~~il~~-------------------i~~~fl~~~~------------~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~ 252 (373)
T PF14911_consen 204 LRKFILQV-------------------IRSNFLEFKG------------SAPPPRLASVLAFLQQLLKRLQRQNENQILT 252 (373)
T ss_pred HHHHHHHH-------------------HHHHHhcCCC------------CCCCCcHHHHHHHHHHHHHhcCcccchhHHH
Confidence 55543322 2234555443 226666666667777766654 223344
Q ss_pred hHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccc-----cccccchHHHHHhhhhh--hhHHHHHHHH
Q 010785 360 EFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRK-----VILPIIFPALERNARKH--WNQAVQSLTL 432 (501)
Q Consensus 360 eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~-----~IlPii~paL~~~s~~H--Wn~~V~~l~~ 432 (501)
....+..++++.+-.| +.+.+|---|..+ ++.|-+++. .+=-.+-.++..-.+.| |+ -.-.+
T Consensus 253 ~~~~~lp~lL~c~~~v--~e~~~~k~~a~e~------l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~---t~~~f 321 (373)
T PF14911_consen 253 LLRLVLPSLLECLMLV--NEEPQVKKLATEL------LQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHY---TYQYF 321 (373)
T ss_pred HHHHhhHHHHHHHhhc--CCCcchhHHHHHH------HHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhh---hHHHH
Confidence 4566778888877766 3344555544432 222222211 11111112222112221 12 23455
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHH
Q 010785 433 NVRKIFSDIDPELFEECLLKFQED----EAKEEE-IKMKREATWKRLEEI 477 (501)
Q Consensus 433 nvlk~l~e~D~~lf~~~~~~~~~~----~~~~~~-~~~~r~~~W~~le~~ 477 (501)
.++.-+.++||++-..+.-...+. |.++.. ++..-++.|.|++..
T Consensus 322 ~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~~ 371 (373)
T PF14911_consen 322 QFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLSH 371 (373)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 677777889998877766544322 222211 112336788887653
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=36.45 E-value=4.9e+02 Score=27.18 Aligned_cols=129 Identities=23% Similarity=0.292 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhhcccC-----CCCCHHHHHH-HHHHHHcccCCCcHHHH-HHHHHH----HhhcCCCCCccccchHHHH
Q 010785 241 IRKAINNIFYRFIFETE-----KHNGIAELLE-ILGSIINGFALPLKEEH-KLFLVR----ALIPLHKPKCVAMYHQQLS 309 (501)
Q Consensus 241 IRk~Innif~~fiyEte-----~~nGIaELLe-IlgSIInGFalPLKeEH-k~Fl~r----vLiPLHk~k~l~~Yh~qL~ 309 (501)
|+|.|-.++..||-..+ ..+=|.+|++ ||+-.-+ ..|--.|+ ..-+.. -+=.+. .+.+......+.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~--~~p~~r~~evL~l~~~ii~kl~~~~-~~~v~~I~~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQN--SVPDAREPEVLSLMATIINKLGELI-QPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHH--S-GGGS-HHHHHHHHHHHHHHGGGC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc--CCccccChhHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 55666666666665544 2333455555 4444444 23332222 222221 122222 345666678888
Q ss_pred HHHHHHHHhCcccH----HH---HHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHH
Q 010785 310 YCITQFVEKDCKLA----DT---VIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 382 (501)
Q Consensus 310 yCi~qFveKDp~La----~~---vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQ 382 (501)
.|....+.+|-.=. .. .++.+.++=| ..+-.+++++|..++ .-+.-++.+++-.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f---------------~~l~~lp~~~f~~~i----dsi~wg~kh~~~~ 180 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF---------------PALLQLPPEQFKLVI----DSIVWGFKHTNRE 180 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT---------------HHHHHS-HHHHHHHH----HHHHHHHTSSSHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH---------------HHHHcCCHHHHHHHH----HHHHHHhCCCcHH
Confidence 99999998874322 11 2222222211 123346888888754 5556678899999
Q ss_pred HHHHHHhhh
Q 010785 383 VAERALFLW 391 (501)
Q Consensus 383 VAERAL~~W 391 (501)
|++.+|...
T Consensus 181 I~~~~L~~l 189 (319)
T PF08767_consen 181 ISETGLNIL 189 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 17
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=35.41 E-value=3.2e+02 Score=33.72 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhcccccccc--------chHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 010785 369 FHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPI--------IFPALERNARKHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 369 F~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPi--------i~paL~~~s~~HWn~~V~~l~~nvlk~l~e 440 (501)
+++.++-+.+---.+...++.+ ++++=.+.|.+| |+|+ ++|++..|...|.. ..+|..|-+-+.+
T Consensus 804 ~q~kik~~~ki~~k~Vnkqle~-~~~ys~e~i~~n---il~ll~dLkEK~~lpaicfn~dr~fc---ekla~kv~~~Le~ 876 (1330)
T KOG0949|consen 804 TQKQIKYVYKLQTKEVNKQLES-VVDYSSEYILEN---ILDLLMDLKEKNMLPAICFNTDRDFC---EKLALKVHRQLES 876 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhHhhh-cccCcHHHHHHH---HHHHHHHHHhccccchhcccchHHHH---HHHHHHHHHHHHH
Confidence 3334444444334455677777 888777777777 4432 34455445444444 3455555555555
Q ss_pred hCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 441 IDP-ELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAA 479 (501)
Q Consensus 441 ~D~-~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~ 479 (501)
++. +--++|..+++ .+++...+.+|.++.|.+=...|.
T Consensus 877 ~e~Ee~k~k~m~k~k-k~~~~a~~r~Kt~e~~~k~~~~~e 915 (1330)
T KOG0949|consen 877 MEMEEKKDKLMEKMK-KEAKRARDREKTKESWIKESIAAE 915 (1330)
T ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 553 55566776665 344455556666778877655554
No 18
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.76 E-value=1.6e+02 Score=25.59 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=47.0
Q ss_pred hhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccc---cccchHHHHHhhhhhhhHHHHHHHHHH
Q 010785 358 PGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVI---LPIIFPALERNARKHWNQAVQSLTLNV 434 (501)
Q Consensus 358 ~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~I---lPii~paL~~~s~~HWn~~V~~l~~nv 434 (501)
...+..+++|++ .|++.++..|-..|. |.+.++.+..+..+ |+-||++|.+... -=++.||+-|.-+
T Consensus 22 ~~~l~~Il~pVL----~~~~D~d~rVRy~Ac-----EaL~ni~k~~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 22 SKYLDEILPPVL----KCFDDQDSRVRYYAC-----EALYNISKVARGEILPYFNEIFDALCKLSA-DPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHH----HHcCCCcHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHH
Confidence 344555555555 799999999988777 45555555555555 4557777777544 3367788777666
Q ss_pred HHHHH
Q 010785 435 RKIFS 439 (501)
Q Consensus 435 lk~l~ 439 (501)
-+++.
T Consensus 92 d~llk 96 (97)
T PF12755_consen 92 DRLLK 96 (97)
T ss_pred HHHhc
Confidence 65554
No 19
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.91 E-value=2.7e+02 Score=24.21 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=51.5
Q ss_pred cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCC-CcHH-HHHHHHhhhcchhHHHH
Q 010785 322 LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSS-SHFQ-VAERALFLWNNDHIENL 399 (501)
Q Consensus 322 La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S-~hfQ-VAERAL~~WnNe~i~~l 399 (501)
|+..+.....+.||-..+. |+.++-..+.. ++.....+ .-+++.+..=+.+ .+-. -.+| ...+...
T Consensus 8 l~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~~~-L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~~ 75 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLELV-LRILRILPEEITDFRRSSLSQER------RRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHHHH-HHHHHHHHHHHHTSHCCHSHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHHHH-HHHHHHHHHHHHhhhchhhhHHH------HHHHHHH
Confidence 4556666677778877775 66666666554 33333322 2344444433322 1111 1122 3556667
Q ss_pred HHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHH
Q 010785 400 IKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKI 437 (501)
Q Consensus 400 i~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~ 437 (501)
+.++...|+.++...|..+...++ ..+...+..+++-
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~-~~~~~~~L~~l~s 112 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEAN-EELVKAALKCLKS 112 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHH
Confidence 777755555555555554444442 4444444444433
No 20
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=32.64 E-value=7.1e+02 Score=30.38 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhh--hhhHHHHHHHHHHHHHHHhhCH
Q 010785 366 VPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARK--HWNQAVQSLTLNVRKIFSDIDP 443 (501)
Q Consensus 366 ~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~--HWn~~V~~l~~nvlk~l~e~D~ 443 (501)
+-||..|-+|++|.+-+-.--||.+|+ +-.-.+..+-...+.|+.++.+++.-.- --+-+.+-++.. -
T Consensus 127 pElv~~i~~~l~~~n~n~i~~am~vL~-el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~---------~ 196 (1005)
T KOG2274|consen 127 PELVPFILKLLSSGNENSIHGAMRVLA-ELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR---------G 196 (1005)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHH-HHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh---------h
Confidence 336777778888877777777777775 3333344444566778888888876442 222222222222 4
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010785 444 ELFEECLLKFQEDE----AKEEEIKMKREATWKRLEEIAAMKAAS 484 (501)
Q Consensus 444 ~lf~~~~~~~~~~~----~~~~~~~~~r~~~W~~le~~A~~~~~~ 484 (501)
.+|.+|+.....-+ +..+.--..--..|..+.....+.+-+
T Consensus 197 ~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g 241 (1005)
T KOG2274|consen 197 KLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDG 241 (1005)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 67888887653222 223333344466788887777665544
No 21
>PF15611 EH_Signature: EH_Signature domain
Probab=30.66 E-value=6.4e+02 Score=26.31 Aligned_cols=94 Identities=19% Similarity=0.356 Sum_probs=60.8
Q ss_pred ChhhHHhhhHHHHHHHHHHh-C-CCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHH
Q 010785 357 QPGEFQRCMVPLFHQIGRCL-S-SSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNV 434 (501)
Q Consensus 357 ~~~eF~~i~~pLF~~la~Ci-~-S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nv 434 (501)
.++....++.-+..++..|. . ..|-++-+.++-+|.|+++- .+...|...=-....-|
T Consensus 185 ~~~~~~~~~~~lL~~~~~~~~~~~~~~~l~~~~l~~~GdPr~~--------------------~~~~~W~~v~e~a~~~v 244 (389)
T PF15611_consen 185 RPEQRKRALEALLERYIDRSPDEPVHEALRDLLLAIWGDPRLP--------------------SSQPNWSGVSEEARQMV 244 (389)
T ss_pred chhHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCCCC--------------------ccccchhhcCHHHHHHH
Confidence 34445556666666666555 2 25667777888888877651 11122887444455566
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 435 RKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEI 477 (501)
Q Consensus 435 lk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~ 477 (501)
+.-|..-|=++|=+...++.. +...|..-|.+..+.
T Consensus 245 ~~Wl~~~dL~~Ff~~l~~~~~-------~~~~R~~FW~~y~~~ 280 (389)
T PF15611_consen 245 RRWLSKEDLELFFDLLSQDGD-------MDPRRKNFWLRYLDQ 280 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-------cchHHHHHHHHHHHH
Confidence 777888887777776654432 667889999998887
No 22
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.65 E-value=3.2e+02 Score=25.26 Aligned_cols=109 Identities=20% Similarity=0.344 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcC-----Chh---hHHh-hhHHHHHHHHHHhCCCcHHHHHHHHhhhcc--hhHHHHHHhccccccccc
Q 010785 343 VMFLGELEEVLEST-----QPG---EFQR-CMVPLFHQIGRCLSSSHFQVAERALFLWNN--DHIENLIKQNRKVILPII 411 (501)
Q Consensus 343 v~FL~EleeILe~~-----~~~---eF~~-i~~pLF~~la~Ci~S~hfQVAERAL~~WnN--e~i~~li~~n~~~IlPii 411 (501)
++=|.-|+.+|+.- ..+ .|.. +...++..|.+++.+.+++|.++++.+.-+ .++-..++.-.+++++.+
T Consensus 40 ~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i 119 (168)
T PF12783_consen 40 LLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHI 119 (168)
T ss_pred HHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777643 112 3443 347899999999999999999999865432 344555555566777766
Q ss_pred hHHHHHhhh-hhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010785 412 FPALERNAR-KHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQE 455 (501)
Q Consensus 412 ~paL~~~s~-~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~ 455 (501)
+-.+..... .-| -|.++..+++-+-. ||.+.-+.-.+|..
T Consensus 120 ~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 120 ILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDC 160 (168)
T ss_pred HHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCC
Confidence 664444323 246 56677777777664 78777776666643
No 23
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=29.24 E-value=2.9e+02 Score=26.30 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChhhHHhhh------HHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHh
Q 010785 346 LGELEEVLESTQPGEFQRCM------VPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQ 402 (501)
Q Consensus 346 L~EleeILe~~~~~eF~~i~------~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~ 402 (501)
=+-+.+++..++-+++.... .+.|+.+-+.+.|+-||..-.+ +|+|+.+.+++..
T Consensus 104 ~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 104 NGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 33444455555566665443 6899999999999999977665 5899999887754
No 24
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=28.99 E-value=55 Score=31.96 Aligned_cols=14 Identities=43% Similarity=0.522 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhccc
Q 010785 243 KAINNIFYRFIFET 256 (501)
Q Consensus 243 k~Innif~~fiyEt 256 (501)
=.|||+||||+.-.
T Consensus 77 MamnNv~Yr~~hl~ 90 (177)
T TIGR00777 77 MAMNNVFYRGRHLL 90 (177)
T ss_pred HhhhhHHHHhHhhc
Confidence 35899999998654
No 25
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.44 E-value=4.2e+02 Score=24.61 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=57.6
Q ss_pred HHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhh-HHHHHHHHHHhC------CCcHHHH
Q 010785 312 ITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCM-VPLFHQIGRCLS------SSHFQVA 384 (501)
Q Consensus 312 i~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~-~pLF~~la~Ci~------S~hfQVA 384 (501)
|...|..++.-+...++.|.|-=-..|+.-++.-|.-||.+...|...--+.+. ......+.+.++ ..|..|-
T Consensus 25 icD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk 104 (139)
T cd03567 25 FCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVK 104 (139)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHH
Confidence 456678899998999999988877888777888899999888888664444444 344445566663 2678888
Q ss_pred HHHHhh
Q 010785 385 ERALFL 390 (501)
Q Consensus 385 ERAL~~ 390 (501)
+|.|.+
T Consensus 105 ~kil~l 110 (139)
T cd03567 105 TKIIEL 110 (139)
T ss_pred HHHHHH
Confidence 887765
No 26
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.50 E-value=1.9e+02 Score=26.83 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCcc
Q 010785 262 IAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCV 301 (501)
Q Consensus 262 IaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l 301 (501)
..-.|.|+..++..|.--||.|-..||..++.|+-.++..
T Consensus 90 ~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~ 129 (168)
T PF12783_consen 90 FSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNS 129 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 3457899999999999999999999999999988776665
No 27
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=26.67 E-value=8.2e+02 Score=26.23 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHhhccCCCCCCCcCcccccCC----CCCCCCCCCCCC---chHHH
Q 010785 130 IKRQTLVELVDYVSSANGKFPE--VVMQEMVKMVSANLFRTLTSPPRENKVLEAFD----LEEEEPSMDPAW---PHLQV 200 (501)
Q Consensus 130 iKr~tL~ELvd~v~~~~~~lte--~i~~~i~~Mvs~NiFR~lPp~~~~~~~~~~~d----~eedep~~epaW---pHLql 200 (501)
.++..+..+.+.+.+....-.+ +.+-+.+-.+-..+.|.+|+.....-....|+ +++..|+.-.+. .+-.-
T Consensus 87 ~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T PF12460_consen 87 FHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSR 166 (415)
T ss_pred HHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccccccccc
Q ss_pred HHHHHHHHHhcCCCCCh--hHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCC
Q 010785 201 VYEFLLRLLDLFDSEDP--REREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFAL 278 (501)
Q Consensus 201 VYeill~LL~LFdSeDp--RERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFal 278 (501)
..-++..++.-++.+-. .-.+++..++.....--- +++|.+....+.-.+ .++..-..+-+++.+...-+..
T Consensus 167 ~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~---~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~ 240 (415)
T PF12460_consen 167 LVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSED---EFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISS 240 (415)
T ss_pred HHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcc
Q ss_pred CcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHH--hCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcC
Q 010785 279 PLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVE--KDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLEST 356 (501)
Q Consensus 279 PLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFve--KDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~ 356 (501)
.--.+++.--..+++=+-|. -+--+|+.-...+..+++ .|+.+...+-+++- +++.+.++++...
T Consensus 241 ~~~~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~------------il~~d~~~~l~~~ 307 (415)
T PF12460_consen 241 SEDSELRPQALEILIWITKA-LVMRGHPLATELLDKLLELLSSPELGQQAAKAFG------------ILLSDSDDVLNKE 307 (415)
T ss_pred cCCcchhHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHh------------hHhcCcHHhcCcc
Q ss_pred Chhh---------HHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHH
Q 010785 357 QPGE---------FQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAV 427 (501)
Q Consensus 357 ~~~e---------F~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V 427 (501)
.... |..++++|...+...-++ .-...-.||...-+.-=-+++..+-..++|+++-+|.-. |..|
T Consensus 308 ~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-----~~~v 381 (415)
T PF12460_consen 308 NHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-----DADV 381 (415)
T ss_pred ccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-----CHHH
Q ss_pred HHHHHHHHHHHHhhCHHHHHH
Q 010785 428 QSLTLNVRKIFSDIDPELFEE 448 (501)
Q Consensus 428 ~~l~~nvlk~l~e~D~~lf~~ 448 (501)
+..+.++++.+.+-+++++.+
T Consensus 382 ~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 382 LLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHHHHcCHHHHHH
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=25.09 E-value=1.2e+03 Score=27.66 Aligned_cols=161 Identities=10% Similarity=0.123 Sum_probs=82.4
Q ss_pred CCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHh
Q 010785 213 DSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRAL 292 (501)
Q Consensus 213 dSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvL 292 (501)
..-|..=+...-.-++++--||.. .-..+-+++..++-.... =+.|.+.++..|+..+. +.+ .+.+.+
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~--~v~e~i~vik~IlrkyP----~~~--il~~L~ 445 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPE--LLPQVVTAAKDIVRKYP----ELL--MLDTLV 445 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHCc----cHH--HHHHHH
Confidence 344443333333444555545422 222333455566632222 26677888888877653 112 112211
Q ss_pred hcCCCCCccc--cchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHH
Q 010785 293 IPLHKPKCVA--MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFH 370 (501)
Q Consensus 293 iPLHk~k~l~--~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~ 370 (501)
-.++. ..+. .=-.-+.+.+-+|.+.-+. +..+++.+++.|---++.=+...|.=.-.++-.. |.+.+.....+|+
T Consensus 446 ~~~~~-~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-p~~~~~~l~~vL~ 522 (746)
T PTZ00429 446 TDYGA-DEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-PQGMEPQLNRVLE 522 (746)
T ss_pred Hhhcc-cccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Confidence 11111 0010 1112345666777654433 5677777777776655444444555555555443 4455555545554
Q ss_pred HHHHHh-CCCcHHHHHHHHhhh
Q 010785 371 QIGRCL-SSSHFQVAERALFLW 391 (501)
Q Consensus 371 ~la~Ci-~S~hfQVAERAL~~W 391 (501)
. |. .+.++.|=.||.++|
T Consensus 523 ~---~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 523 T---VTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred H---HHhcCCChhHHHHHHHHH
Confidence 3 43 468999999999999
No 29
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=24.75 E-value=1.1e+02 Score=26.70 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=44.9
Q ss_pred cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCCh---hh----HHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcch
Q 010785 322 LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQP---GE----FQRCMVPLFHQIGRCLSSSHFQVAERALFLWNND 394 (501)
Q Consensus 322 La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~---~e----F~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe 394 (501)
-+..++..+.++=..+.+.+-+-.|.-+.+|+-.... .. |..+....|..+.......+-+-..+-+.+|..-
T Consensus 29 ~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~ 108 (121)
T smart00582 29 HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 3344555555555556666777788888888865422 23 4445555666666555445666677888999874
No 30
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=22.48 E-value=72 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=33.1
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFI 241 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fI 241 (501)
.+|+++..|--.-..++..-+|+-.|.-+..+|||+
T Consensus 49 RkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 49 RKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 578888899999999999999999999999999985
No 31
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=22.47 E-value=2.2e+02 Score=26.00 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=54.9
Q ss_pred HHHHHhcC-ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHHhccccccccc-hHHHHHhhh
Q 010785 349 LEEVLEST-QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN------NDHIENLIKQNRKVILPII-FPALERNAR 420 (501)
Q Consensus 349 leeILe~~-~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn------Ne~i~~li~~n~~~IlPii-~paL~~~s~ 420 (501)
+.+|...+ +.++|..||.-|.+||... ..+-...-.||.+.. .+.++.-+.+|...|=.+- |.-... ..
T Consensus 22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~-~g 98 (123)
T cd03571 22 MAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDE-NG 98 (123)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCC-CC
Confidence 44455544 6788999999999998865 456677777877653 2444444444432221110 000111 12
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 010785 421 KHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 421 ~HWn~~V~~l~~nvlk~l~e 440 (501)
..|-..||..|.+++.+++|
T Consensus 99 ~d~G~~VR~ka~~i~~Ll~D 118 (123)
T cd03571 99 KDQGINVREKAKEILELLED 118 (123)
T ss_pred CchhHHHHHHHHHHHHHhCC
Confidence 36899999999999999875
No 32
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.24 E-value=6.1e+02 Score=23.23 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHH-HHHHHHhh---hcchhHHHHHHhccccccccchHHHHHh---
Q 010785 346 LGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ-VAERALFL---WNNDHIENLIKQNRKVILPIIFPALERN--- 418 (501)
Q Consensus 346 L~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQ-VAERAL~~---WnNe~i~~li~~n~~~IlPii~paL~~~--- 418 (501)
++||-++.-. ++.+|..++.-|.++|.+ .|+|.+ =|-|-|.. --++.|...+..|...|-- .....
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~----~~~f~g~~ 94 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE----CANYKGPP 94 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH----HHHcCCCC
Confidence 5566655544 788999999999999997 788873 23333322 2357888888877643321 11111
Q ss_pred ---hhhhhhHHHHHHHHHHHHHHHh
Q 010785 419 ---ARKHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 419 ---s~~HWn~~V~~l~~nvlk~l~e 440 (501)
.-.-+++.||.-|..+++++..
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhc
Confidence 1145889999999988887653
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=22.03 E-value=9.3e+02 Score=26.70 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHh--cccccc-ccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhC
Q 010785 366 VPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQ--NRKVIL-PIIFPALERNARKHWNQAVQSLTLNVRKIFSDID 442 (501)
Q Consensus 366 ~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~--n~~~Il-Pii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D 442 (501)
.-++..|..|+.++...||+.|..+..+ +.+. ..+.++ +-+.+.|.+...+ =|..||--++.++-.+....
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~-----l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK-----LASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH-----HhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999865432 2111 111121 1125566554433 36778888888888888889
Q ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 010785 443 PELFEECLL--KFQEDEAK-EEEIKMKREATWKRLEEIAA 479 (501)
Q Consensus 443 ~~lf~~~~~--~~~~~~~~-~~~~~~~r~~~W~~le~~A~ 479 (501)
+++++.|.. -+..-... ....---+....+-+.++|.
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 999988875 12111110 00111123455666777775
No 34
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=21.78 E-value=1.4e+03 Score=27.13 Aligned_cols=108 Identities=21% Similarity=0.235 Sum_probs=72.4
Q ss_pred HHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHh
Q 010785 323 ADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQ 402 (501)
Q Consensus 323 a~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~ 402 (501)
.-+.|+-+++. ..+-+==++++.-+.-|++.+.+++|..-+.|+ |-+|+++.-.|+=|++|... +.+.+.|-
T Consensus 350 ~~p~l~pi~~~--~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~Ilpl---L~~S~~~~~~~iQ~~~L~~l--ptv~e~iD- 421 (700)
T KOG2137|consen 350 MLPALKPIYSA--SDPKQALLFILENMDLLKEKTPPEEVKEKILPL---LYRSLEDSDVQIQELALQIL--PTVAESID- 421 (700)
T ss_pred hhHHHHHHhcc--CCcccchhhHHhhHHHHHhhCChHHHHHHHHHH---HHHHhcCcchhhHHHHHHhh--hHHHHhcc-
Confidence 34566666665 222222345777788888999999999877775 44599999999999999865 34444442
Q ss_pred ccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010785 403 NRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFS 439 (501)
Q Consensus 403 n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~ 439 (501)
-..+=-.|+|.|......|=+.+|+.-+.-.+..++
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 122223356777776777888888877666666555
No 35
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=21.54 E-value=1.2e+03 Score=26.26 Aligned_cols=154 Identities=23% Similarity=0.357 Sum_probs=90.2
Q ss_pred cCCCcHHHHHHHHHH-----HhhcCCCCCccccchHHHHHHHHHHHHhCcccHH-HHHHHhhccCCCCCchHHhHHHHHH
Q 010785 276 FALPLKEEHKLFLVR-----ALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLAD-TVIRGLLKYWPVTNSTKEVMFLGEL 349 (501)
Q Consensus 276 FalPLKeEHk~Fl~r-----vLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~-~vi~gLLk~WP~tns~KEv~FL~El 349 (501)
++.|=-..|+.|+.. ..+|.-.|.-+..-|+ |...=+-||-.|++ .+++. +..|.--.++|.++.
T Consensus 80 p~~~~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhq----t~r~q~l~d~vl~~~~~~~~-----a~~~~l~s~i~~~~~ 150 (458)
T KOG2175|consen 80 PAVPQSKKHREFLSLLAKFKEVIPISDPELLAKIHQ----TFRVQYLKDVVLPEPGVFDE-----ATGNTLNSFIFFNKV 150 (458)
T ss_pred ccCCChhhhHHHHHhhccceeeeecCCHHHHHHHHH----HHHHHHhheeeecCCcchhc-----chhHHHHHHHHHhhh
Confidence 555544449999863 3445544544444443 32222334444442 11110 123344455666666
Q ss_pred HHHHhcCChhhHHhhhHHHHHHHHHHhCCCc-------------HHHHHHHHhhhcchhHHH-HHHhccccccccchHHH
Q 010785 350 EEVLESTQPGEFQRCMVPLFHQIGRCLSSSH-------------FQVAERALFLWNNDHIEN-LIKQNRKVILPIIFPAL 415 (501)
Q Consensus 350 eeILe~~~~~eF~~i~~pLF~~la~Ci~S~h-------------fQVAERAL~~WnNe~i~~-li~~n~~~IlPii~paL 415 (501)
+ |++.++.+++- +.+||.++.- .+.. |-+.-++|-.|....|.. ++... |++++
T Consensus 151 ~-ii~~lqed~~~--l~eLf~~l~~--~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~-------i~~~l 218 (458)
T KOG2175|consen 151 N-IVSLLQEDEKF--LIELFARLRS--ESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKG-------ILDAL 218 (458)
T ss_pred h-hhhhhhcCchH--HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhh-------hHHHH
Confidence 5 55666666554 5677777531 1111 113346777777777433 33332 77778
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 010785 416 ERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLL 451 (501)
Q Consensus 416 ~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~ 451 (501)
+...+.- +..+|..+..++..+.|++|.+..+-+.
T Consensus 219 e~~~~~~-d~~~r~~~~di~~~~ve~~~~~i~~~~~ 253 (458)
T KOG2175|consen 219 EYVLKMP-DTQVRSAATDILARLVEMSPSMIRSFTL 253 (458)
T ss_pred HHHhcCC-cchhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777766 8999999999999999999999888764
No 36
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=20.69 E-value=7.2e+02 Score=23.46 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=24.8
Q ss_pred cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHh
Q 010785 322 LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLE 354 (501)
Q Consensus 322 La~~vi~gLLk~WP~tns~KEv~FL~EleeILe 354 (501)
+.+.+++..+..|=..-|..+ .|.+|+..+|.
T Consensus 11 li~~IirdfV~sWY~~is~d~-~F~~~i~~~l~ 42 (176)
T smart00313 11 LISKIIRDYVQGWYKGVSEDP-SFLREIEQTLE 42 (176)
T ss_pred HHHHHHHHHHHHHhccCCCCh-hHHHHHHHHHH
Confidence 456788888899987755444 79999998886
No 37
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.67 E-value=4.4e+02 Score=23.35 Aligned_cols=70 Identities=17% Similarity=0.329 Sum_probs=50.0
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH
Q 010785 192 DPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGS 271 (501)
Q Consensus 192 epaWpHLqlVYeill~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgS 271 (501)
+-...||+-+.+|+..|..-+|-+..-| +-.-|+++|. |+.+.+.....+ .....+.|+.+++..
T Consensus 46 ~~~~~~l~ka~~Ii~~L~~~Ld~e~g~e---ia~~L~~lY~-------y~~~~L~~A~~~-----~d~~~l~~v~~~l~~ 110 (122)
T PF02561_consen 46 EEKNEALQKAQDIITELQSSLDFEKGGE---IADNLFRLYD-------YMIRQLVQANLK-----KDPERLDEVIRILEE 110 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTTHH---HHHHHHHHHH-------HHHHHHHHHHHT-----T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcH---HHHHHHHHHH-------HHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 4456799999999988999888876655 7788999997 565555544332 223557788888887
Q ss_pred HHccc
Q 010785 272 IINGF 276 (501)
Q Consensus 272 IInGF 276 (501)
+-.||
T Consensus 111 l~~aW 115 (122)
T PF02561_consen 111 LRDAW 115 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77666
No 38
>PF14724 mit_SMPDase: Mitochondrial-associated sphingomyelin phosphodiesterase
Probab=20.38 E-value=5.9e+02 Score=30.37 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=73.2
Q ss_pred HHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCCh------------h--------h---HH----hhhHHHHHHHHHHh
Q 010785 324 DTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQP------------G--------E---FQ----RCMVPLFHQIGRCL 376 (501)
Q Consensus 324 ~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~------------~--------e---F~----~i~~pLF~~la~Ci 376 (501)
-.+++..+.|||...|-+ .-+|--|..++| + . |. -+-..||..+..+.
T Consensus 371 Y~FL~~~f~~wPLdsSFr-----~VLE~WLSYIQPWRY~~~~~~~~~~~~~~~~~~~W~~FV~~Nl~~YT~lf~~fl~R~ 445 (765)
T PF14724_consen 371 YRFLRHCFDHWPLDSSFR-----VVLELWLSYIQPWRYTPEKQSPQSESQDRPVSERWAPFVLENLLFYTSLFQGFLPRF 445 (765)
T ss_pred HHHHHHhccCCCChHHHH-----HHHHHHHHhhCCeecCCccCCCccccccccchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 346788889999998844 345656665544 1 1 11 01123455444432
Q ss_pred -----CC-CcHHHHHHHHhhhcchhHHHHHHhcccccccc------------chHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 010785 377 -----SS-SHFQVAERALFLWNNDHIENLIKQNRKVILPI------------IFPALERNARKHWNQAVQSLTLNVRKIF 438 (501)
Q Consensus 377 -----~S-~hfQVAERAL~~WnNe~i~~li~~n~~~IlPi------------i~paL~~~s~~HWn~~V~~l~~nvlk~l 438 (501)
.+ -|.++--|.+.+++-+.++.+|.+.-+....- +-|.....--..|++++.+.+..|..-.
T Consensus 446 ~r~Dl~~~~na~ml~RvakVfsQ~~L~~~l~~~E~l~~~~~~~~~~~~~~~~~~~~~~~S~~s~~~~~~t~~~~~vkshv 525 (765)
T PF14724_consen 446 LRLDLSSPKNALMLFRVAKVFSQPNLAEMLQNGEQLFLEPEHGFPHRQHRVNLTPSKSGSFLSSWNPAVTDASFKVKSHV 525 (765)
T ss_pred HhcccccchhHHHHHHHHHHhCchhHHHHHHHHHHHhcCCccccCCCccccccCcccCCCcccCCCccchhHHHHHHHHH
Confidence 22 45678889999999999999998654444331 1123322233789999999999999888
Q ss_pred HhhCH
Q 010785 439 SDIDP 443 (501)
Q Consensus 439 ~e~D~ 443 (501)
+++..
T Consensus 526 ~~Le~ 530 (765)
T PF14724_consen 526 YELEG 530 (765)
T ss_pred Hhhhc
Confidence 88843
No 39
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=20.33 E-value=1.5e+02 Score=28.72 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=19.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010785 451 LKFQED-EAKEEEIKMKREATWKRLEEIAA 479 (501)
Q Consensus 451 ~~~~~~-~~~~~~~~~~r~~~W~~le~~A~ 479 (501)
.+|.+. .+++++++++++++|++|++.+.
T Consensus 132 ~~~~~~~~er~k~~~e~~~~k~~~l~~~~e 161 (162)
T PF13019_consen 132 AEWLEKKPEREKKEKEKRRKKLEKLVEMLE 161 (162)
T ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHHHhc
Confidence 344333 34456666778899999998874
No 40
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=20.27 E-value=3.7e+02 Score=31.35 Aligned_cols=105 Identities=22% Similarity=0.390 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcc---hhHHH-HH-Hh-------c-------cccccccchHHHHHh----hhhh
Q 010785 366 VPLFHQIGRCLSSSHFQVAERALFLWNN---DHIEN-LI-KQ-------N-------RKVILPIIFPALERN----ARKH 422 (501)
Q Consensus 366 ~pLF~~la~Ci~S~hfQVAERAL~~WnN---e~i~~-li-~~-------n-------~~~IlPii~paL~~~----s~~H 422 (501)
..||...++-+-|+|=+||-.|.-||.- |.+.. +. ++ | ...|+|.++.-|.+- -..-
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 3488889999999999999999999931 22211 11 11 1 233788887777762 2357
Q ss_pred hhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010785 423 WNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAM 480 (501)
Q Consensus 423 Wn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~ 480 (501)
||...- |..-+.+|.+.-.+.--+=.-.|- .+--|.+.|...|..+.+
T Consensus 342 Wn~sma--A~sCLqlfaq~~gd~i~~pVl~Fv--------Eqni~~~~w~nreaavmA 389 (858)
T COG5215 342 WNPSMA--ASSCLQLFAQLKGDKIMRPVLGFV--------EQNIRSESWANREAAVMA 389 (858)
T ss_pred cchhhh--HHHHHHHHHHHhhhHhHHHHHHHH--------HHhccCchhhhHHHHHHH
Confidence 986554 444455554443322222111221 222356688888877643
Done!