Query 010785
Match_columns 501
No_of_seqs 187 out of 305
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npp_B PP2A, B subunit, serine 100.0 7E-141 2E-145 1114.5 26.1 396 87-484 24-443 (449)
2 3fga_B Serine/threonine-protei 100.0 6E-140 2E-144 1093.9 31.5 378 97-476 1-402 (403)
3 2jak_A Serine/threonine-protei 100.0 1E-124 4E-129 976.2 31.6 333 87-421 36-392 (392)
4 2x19_B Importin-13; nuclear tr 91.5 6.4 0.00022 43.7 18.2 211 198-451 681-905 (963)
5 1ibr_B P95, importin beta-1 su 91.3 6.5 0.00022 38.6 16.3 220 206-443 4-249 (462)
6 1qgr_A Protein (importin beta 88.2 26 0.00089 37.7 19.2 115 322-440 363-479 (876)
7 2qk2_A LP04448P; mini spindles 88.1 9.7 0.00033 35.1 13.9 177 208-391 20-200 (242)
8 2qk1_A Protein STU2; STU2P, XM 87.5 12 0.00041 35.5 14.4 180 210-391 23-215 (249)
9 4fdd_A Transportin-1; heat rep 86.9 40 0.0014 36.9 20.7 158 325-486 629-791 (852)
10 4fdd_A Transportin-1; heat rep 86.2 6.8 0.00023 43.0 13.4 224 206-447 16-251 (852)
11 2bpt_A Importin beta-1 subunit 85.9 41 0.0014 36.1 20.5 227 208-439 229-481 (861)
12 2bpt_A Importin beta-1 subunit 79.2 67 0.0023 34.4 17.5 91 345-439 576-667 (861)
13 1qgr_A Protein (importin beta 78.9 74 0.0025 34.1 18.0 88 347-436 586-675 (876)
14 2of3_A ZYG-9; multifunctional 77.8 33 0.0011 33.8 13.4 94 357-453 77-176 (266)
15 1u6g_C TIP120 protein, CAND1; 75.6 44 0.0015 38.3 15.6 98 342-441 494-599 (1230)
16 1u6g_C TIP120 protein, CAND1; 69.5 78 0.0027 36.2 15.7 180 204-391 87-279 (1230)
17 2x1g_F Cadmus; transport prote 68.1 44 0.0015 37.2 13.0 156 196-393 687-855 (971)
18 3u0r_A Apoptosis inhibitor 5; 67.1 1.4E+02 0.0049 32.1 16.7 80 129-232 43-129 (507)
19 2vgl_B AP-2 complex subunit be 66.1 1.1E+02 0.0038 32.2 15.2 174 204-392 354-528 (591)
20 2km4_A Regulator of TY1 transp 64.1 17 0.00057 32.2 7.0 82 315-396 28-118 (142)
21 4fu3_A Regulation of nuclear P 56.8 15 0.00052 31.6 5.3 80 314-393 28-113 (135)
22 2qk1_A Protein STU2; STU2P, XM 51.8 1.1E+02 0.0039 28.7 11.1 100 348-453 127-234 (249)
23 2jdq_A Importin alpha-1 subuni 51.1 1.8E+02 0.0062 28.2 15.5 73 204-276 108-181 (450)
24 2qk2_A LP04448P; mini spindles 48.0 40 0.0014 30.8 7.0 92 344-442 34-129 (242)
25 1wa5_C Importin alpha RE-expor 44.0 3.8E+02 0.013 29.8 15.9 80 196-275 544-629 (960)
26 1w63_A Adapter-related protein 41.0 3E+02 0.01 29.2 13.4 173 206-393 388-574 (618)
27 1wa5_C Importin alpha RE-expor 39.3 4.4E+02 0.015 29.3 19.9 35 194-234 120-154 (960)
28 1eyh_A Epsin; superhelix of he 39.2 96 0.0033 27.7 7.8 107 325-440 8-122 (144)
29 2x19_B Importin-13; nuclear tr 36.2 1.7E+02 0.006 32.1 11.0 28 366-393 334-366 (963)
30 1oks_A RNA polymerase alpha su 35.9 26 0.0009 26.8 2.9 45 267-313 5-49 (56)
31 3onk_A Epsin-3, ENT3; helix, p 29.9 1.5E+02 0.0053 26.6 7.6 90 349-440 32-129 (150)
32 1ibr_B P95, importin beta-1 su 29.6 3.9E+02 0.013 25.7 13.1 69 347-417 388-458 (462)
33 3m1i_C Exportin-1; heat repeat 27.8 4.9E+02 0.017 29.3 13.1 108 279-390 83-218 (1049)
34 3ibv_A Exportin-T; karyopherin 27.8 86 0.0029 35.9 6.8 88 199-296 698-786 (980)
35 3m1i_C Exportin-1; heat repeat 27.2 4.8E+02 0.016 29.4 12.8 156 220-378 430-600 (1049)
36 1sz9_A PCF11 protein; RNA poly 26.7 1.5E+02 0.0052 26.1 6.9 90 305-394 23-115 (144)
37 3tjz_B Coatomer subunit gamma; 26.6 5.1E+02 0.017 26.1 14.1 158 258-453 59-218 (355)
38 1wa5_B Importin alpha subunit; 25.1 5.4E+02 0.019 25.9 14.2 181 206-393 176-367 (530)
39 1vdy_A Hypothetical protein (R 22.3 91 0.0031 27.9 4.5 93 346-442 32-132 (140)
40 3gs3_A Symplekin, LD45768P; he 21.1 5.6E+02 0.019 24.7 11.5 107 310-437 38-152 (257)
41 4flb_A Regulation of nuclear P 20.5 1.7E+02 0.0057 24.9 5.8 78 313-393 28-112 (132)
No 1
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=6.8e-141 Score=1114.49 Aligned_cols=396 Identities=54% Similarity=0.989 Sum_probs=358.8
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhcCccceec-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q 010785 87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL 165 (501)
Q Consensus 87 l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~Ni 165 (501)
+.+||+|+|||++++++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHHHH
Q 010785 166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPREREY 222 (501)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRERd~ 222 (501)
||++||+.++++ ..||+|||||++||+|||||+||++| ++||++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 68999999999999999999999999 58999999999999999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccc
Q 010785 223 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA 302 (501)
Q Consensus 223 LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~ 302 (501)
||||||||||||+++|+|||++|||+||+||||+++||||+||||||||||||||+|||+||++||.||||||||+++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHH
Q 010785 303 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 382 (501)
Q Consensus 303 ~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQ 382 (501)
.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|++|+++++|||++||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 010785 383 VAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEE 462 (501)
Q Consensus 383 VAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~ 462 (501)
||||||++|||++|+++|++|+++|+|+|+|+|++++++|||++||++|++|+++|||||+++|++|+++|+++++++++
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~ 421 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 010785 463 IKMKREATWKRLEEIAAMKAAS 484 (501)
Q Consensus 463 ~~~~r~~~W~~le~~A~~~~~~ 484 (501)
++++|+++|++|+++|++++..
T Consensus 422 ~~~~r~~~W~~i~~~A~~~~~~ 443 (449)
T 2npp_B 422 KMKEREEAWVKIENLAKANPQV 443 (449)
T ss_dssp TSCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999888753
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=5.6e-140 Score=1093.92 Aligned_cols=378 Identities=55% Similarity=1.025 Sum_probs=371.6
Q ss_pred ChHHhHHHHHHHHhcCccceec-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhccCCCCCCCc
Q 010785 97 PNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRE 175 (501)
Q Consensus 97 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~NiFR~lPp~~~~ 175 (501)
|++||++||++||++||++||| +||.+|+++||+||+||+||+|||+++++++||++|+++++||++||||++||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999998876
Q ss_pred CcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHHHHHHHHHHHHhh
Q 010785 176 NKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPREREYLKTVLHRIYG 232 (501)
Q Consensus 176 ~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRERd~LKtiLHriYg 232 (501)
++ .+||||||||++||||||||+||++| ++|+++||||||||||+||||||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 53 68999999999999999999999999 579999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHH
Q 010785 233 KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCI 312 (501)
Q Consensus 233 Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi 312 (501)
||+++|+|||++|||+||+||||+++|||||||||||||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 010785 313 TQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN 392 (501)
Q Consensus 313 ~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn 392 (501)
+||++|||+|+++|++|||||||+|||+||||||+||++||+.++|++|++++.|||++||+|++|+|||||||||++||
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 393 NDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWK 472 (501)
Q Consensus 393 Ne~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~ 472 (501)
|++|+++|++|++.|+|+|+|+|++++++|||++|+++|+||+|+|||||+++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 010785 473 RLEE 476 (501)
Q Consensus 473 ~le~ 476 (501)
+||+
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9875
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1e-124 Score=976.20 Aligned_cols=333 Identities=58% Similarity=1.045 Sum_probs=301.4
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhcCccceec-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q 010785 87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL 165 (501)
Q Consensus 87 l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~Ni 165 (501)
+.+||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHHHH
Q 010785 166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPREREY 222 (501)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRERd~ 222 (501)
||++||.+++++ ..||+|||||++||||||||+||++| ++|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 68999999999999999999999999 58999999999999999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccc
Q 010785 223 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA 302 (501)
Q Consensus 223 LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~ 302 (501)
||||||||||||+++|+||||+|||+|++||||+++|||||||||||||||||||+|||+||++||.||||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHH
Q 010785 303 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 382 (501)
Q Consensus 303 ~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQ 382 (501)
.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.+++++|+++++|||+|||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhh
Q 010785 383 VAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARK 421 (501)
Q Consensus 383 VAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~ 421 (501)
||||||++|||++|+++|++|+++|+|+|||+|++|+++
T Consensus 354 VAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 999999999999999999999999999999999999874
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.54 E-value=6.4 Score=43.68 Aligned_cols=211 Identities=11% Similarity=0.165 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH---hhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHc
Q 010785 198 LQVVYEFLLRLLDLFDSEDPREREYLKTVLHRI---YGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIN 274 (501)
Q Consensus 198 LqlVYeill~LL~LFdSeDpRERd~LKtiLHri---YgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIIn 274 (501)
.+-+..++.++++.+. .|++.++.+-.+++++ ||.-+ .+|+-..+..+.-.|- . .+++.+|.+++.|+.
T Consensus 681 ~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~ 752 (963)
T 2x19_B 681 LQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMYS--T---IPQASALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHH
Confidence 3445555567777654 5677777777788874 44322 3555555543333322 1 246789999999998
Q ss_pred ccCCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHh
Q 010785 275 GFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLE 354 (501)
Q Consensus 275 GFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe 354 (501)
.|+.. +.+. +.+..+-..+..|+...+.+|+.-...+. .-|+.-+..++.
T Consensus 753 ~f~~~--------------~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~---------------~~~f~ll~~~~~ 802 (963)
T 2x19_B 753 IFAHE--------------PAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIV---------------DSFMQLLAQALK 802 (963)
T ss_dssp HHTTC--------------TTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHH---------------HHHHHHHHHHHH
T ss_pred HhCCC--------------cchH-HHHHHHHHHHHHHHHHHHhhCcccCchHH---------------HHHHHHHHHHHH
Confidence 65442 0000 11222445556666666655432101111 124444555554
Q ss_pred cCChhhH-Hhh-hHHHHHHHHHHhCCCcHHHHHHHHhhhcc--------hhHHHHHHhccccccccchHHHH-Hhhhhhh
Q 010785 355 STQPGEF-QRC-MVPLFHQIGRCLSSSHFQVAERALFLWNN--------DHIENLIKQNRKVILPIIFPALE-RNARKHW 423 (501)
Q Consensus 355 ~~~~~eF-~~i-~~pLF~~la~Ci~S~hfQVAERAL~~WnN--------e~i~~li~~n~~~IlPii~paL~-~~s~~HW 423 (501)
.+...-+ ... ...++..+..++...|.-|+..|+.+|.+ +.+...+...-..++..++..+. ...+..|
T Consensus 803 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 882 (963)
T 2x19_B 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLM 882 (963)
T ss_dssp HCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGH
T ss_pred hCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHH
Confidence 4332222 122 45678888889999999999999998853 34444444443444444444443 1224555
Q ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 010785 424 NQAVQSLTLNVRKIFSDIDPELFEECLL 451 (501)
Q Consensus 424 n~~V~~l~~nvlk~l~e~D~~lf~~~~~ 451 (501)
+. ...++..+...++..+.+...
T Consensus 883 ~~-----~~~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 883 DC-----FADILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HH-----HHHHHHHHHHHSHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHChHHHHHHHH
Confidence 42 223334444556666665544
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.28 E-value=6.5 Score=38.64 Aligned_cols=220 Identities=12% Similarity=0.079 Sum_probs=119.3
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhc----ccC----------ChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGK----FMV----------HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGS 271 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgK----f~~----------~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgS 271 (501)
.++|..+-|+|+..|..-...|..+... |.. ...-+|+.-.-+|-+++-.... .+-.+...
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~---- 78 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ---- 78 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh----
Confidence 4567677789999887766666654431 000 1223444333333333311000 00000000
Q ss_pred HHcccCCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhC------cccHHHHHHHhhccCCCC--CchHHh
Q 010785 272 IINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD------CKLADTVIRGLLKYWPVT--NSTKEV 343 (501)
Q Consensus 272 IInGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKD------p~La~~vi~gLLk~WP~t--ns~KEv 343 (501)
. + ..+.++.+..+...|+++.....-.+ .+++.|+......| |.+...++..+- -. +...-.
T Consensus 79 ~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~ 148 (462)
T 1ibr_B 79 R---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKE 148 (462)
T ss_dssp H---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHH
T ss_pred h---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHH
Confidence 0 1 23667888888888888877665545 78999999887654 233333333331 12 222223
Q ss_pred HHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCC--cHHHHHHHHhhhcc--hhHHHHHHhccccccccchHHHHHhh
Q 010785 344 MFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSS--HFQVAERALFLWNN--DHIENLIKQNRKVILPIIFPALERNA 419 (501)
Q Consensus 344 ~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~--hfQVAERAL~~WnN--e~i~~li~~n~~~IlPii~paL~~~s 419 (501)
.-+.-+..+.+...++.+......++..+..|+.++ +-.|-..|+....+ +.+...+.. ....+.+++.|.+..
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhc
Confidence 345566677766666677788888999999999998 77777766655433 111111110 001122444454433
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhCH
Q 010785 420 RKHWNQAVQSLTLNVRKIFSDIDP 443 (501)
Q Consensus 420 ~~HWn~~V~~l~~nvlk~l~e~D~ 443 (501)
. +=+..|+..+..++..+.+..+
T Consensus 227 ~-~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 227 Q-CPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp T-CSSHHHHHHHHHHHHHHHHHCG
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHH
Confidence 3 2345777777777776665544
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.22 E-value=26 Score=37.70 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=68.1
Q ss_pred cHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHH
Q 010785 322 LADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIK 401 (501)
Q Consensus 322 La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~ 401 (501)
+...++..+...---.+...--.-+.-+..+.+.+.++.+......++..+-.+++++|..|-++|+..+. .+...+.
T Consensus 363 ~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~ 440 (876)
T 1qgr_A 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLP 440 (876)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHCG
T ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhCc
Confidence 34445544443332223322223344556666666667777777778888888999999999988887654 2333332
Q ss_pred hc--cccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 010785 402 QN--RKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 402 ~n--~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e 440 (501)
.. ....++-+++.|.+....+ ..|+..+..++..+.+
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 21 2344566777777666553 5666666655555443
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.14 E-value=9.7 Score=35.07 Aligned_cols=177 Identities=14% Similarity=0.069 Sum_probs=107.7
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHhh---cccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHH
Q 010785 208 LLDLFDSEDPREREYLKTVLHRIYG---KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEH 284 (501)
Q Consensus 208 LL~LFdSeDpRERd~LKtiLHriYg---Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEH 284 (501)
+.+.++|.|.+||..--.-|..+-. ++... .+.+ +-+.+...+-.+...+-....+..+|.+.+++...+...+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~-i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGA-LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555678888888876666665543 22211 1222 2223333332122222245678888888887765554444
Q ss_pred HHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChh-hHHh
Q 010785 285 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPG-EFQR 363 (501)
Q Consensus 285 k~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~-eF~~ 363 (501)
..+ ...|+...+.+.- .-.+....++..+++.-+ ...++..++...--.|++=...-+.-|..++....|+ .+..
T Consensus 97 ~~i-lp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 97 SAC-VPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHH-HHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHH-HHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 444 5566666555443 234566677777766533 3556666666665556655556677788888777665 3566
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHhhh
Q 010785 364 CMVPLFHQIGRCLSSSHFQVAERALFLW 391 (501)
Q Consensus 364 i~~pLF~~la~Ci~S~hfQVAERAL~~W 391 (501)
.+..+...|..|++..+..|=+.|....
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7778888889999999998888776543
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.46 E-value=12 Score=35.53 Aligned_cols=180 Identities=7% Similarity=0.064 Sum_probs=116.1
Q ss_pred hcCCCCChhHHHHHHHHHHH-Hh-h--cccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccC-CCcHHHH
Q 010785 210 DLFDSEDPREREYLKTVLHR-IY-G--KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-LPLKEEH 284 (501)
Q Consensus 210 ~LFdSeDpRERd~LKtiLHr-iY-g--Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa-lPLKeEH 284 (501)
+.+.|.|.+||...-.-|.. +- | +.+.+..-... +-+.+...+-.+.+..-...-+.++|.+.+|+. -.+...|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 33478899998776666666 55 3 34311100001 111222233112222234677899999999998 5665234
Q ss_pred HHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhC-c----ccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCCh-
Q 010785 285 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD-C----KLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQP- 358 (501)
Q Consensus 285 k~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKD-p----~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~- 358 (501)
..-+.-.|+..++-+.-. --....+|+..|++.= | .-.+.++.-|+..+-..|++=....|.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 444456777777776532 3356778998898753 2 11345777777777656666666788888888887654
Q ss_pred -hhHHhhh-HHHHHHHHHHhCCCcHHHHHHHHhhh
Q 010785 359 -GEFQRCM-VPLFHQIGRCLSSSHFQVAERALFLW 391 (501)
Q Consensus 359 -~eF~~i~-~pLF~~la~Ci~S~hfQVAERAL~~W 391 (501)
..|.+.+ ..+...|.+|++-+.-.|=+.|....
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7888888 89999999999999999988887654
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=86.91 E-value=40 Score=36.90 Aligned_cols=158 Identities=8% Similarity=0.132 Sum_probs=100.2
Q ss_pred HHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhcc
Q 010785 325 TVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNR 404 (501)
Q Consensus 325 ~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~ 404 (501)
.++..++..|.-.++.=......-+.++...+. .+|...+..+...+.++++...+.|...|. |-=-.+...+..+.
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~--~alg~i~~~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNAT--WAIGEISIQMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHH--HHHHHHHHHHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHH--HHHHHHHHHhhHhH
Confidence 356666666654444333345666777776664 688888888889999999888888866554 33445555554444
Q ss_pred ccccccchHHHHHhhh-hhhhHHHHHHHHHHHHHHHhhCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010785 405 KVILPIIFPALERNAR-KHWNQAVQSLTLNVRKIFSDIDPELF----EECLLKFQEDEAKEEEIKMKREATWKRLEEIAA 479 (501)
Q Consensus 405 ~~IlPii~paL~~~s~-~HWn~~V~~l~~nvlk~l~e~D~~lf----~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~ 479 (501)
...++-+++.|.+..+ .+-+.+|+.-+...+--+....|+.. .++...+...-. .....++++..-+.+-.+..
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~-~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR-NIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH-TSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 4444556666666543 35577888888888888888888765 334443332221 12223456777788888888
Q ss_pred hhcCCCC
Q 010785 480 MKAASNE 486 (501)
Q Consensus 480 ~~~~~~~ 486 (501)
.+|.+..
T Consensus 785 ~~p~~~~ 791 (852)
T 4fdd_A 785 VNPSGVI 791 (852)
T ss_dssp HCGGGTG
T ss_pred hChHhHH
Confidence 8876543
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=86.17 E-value=6.8 Score=43.00 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=120.7
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcc--cCCCCCHHH-HHHHHHHHHcccCCCcHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFE--TEKHNGIAE-LLEILGSIINGFALPLKE 282 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyE--te~~nGIaE-LLeIlgSIInGFalPLKe 282 (501)
.++|...-|+|+..|..-...|..++. .-.|. ..+. ++.. +.....+-- -.-.|...|+..-.++.+
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-----~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-----NYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-----HHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-----HHHH-HHHhccCCCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 445555568899999998888877653 11111 1111 1111 111111100 011233344332245778
Q ss_pred HHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhC-----cccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCC
Q 010785 283 EHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD-----CKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQ 357 (501)
Q Consensus 283 EHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKD-----p~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~ 357 (501)
+.+.+++..|+.+-..+. ..-..+++.|+......| |.|...++..+- -.+..-.-.-+.-|..|++...
T Consensus 86 ~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~----~~~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----SEDYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS----CSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999876443 355778999999988776 233333333322 2222211223334445555443
Q ss_pred hh----hHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHH
Q 010785 358 PG----EFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLN 433 (501)
Q Consensus 358 ~~----eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~n 433 (501)
+. ........++..+-+|+.+++..|-..|+...++ ++....+.-...++-+++.|.+..... +..||..++.
T Consensus 161 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~ 237 (852)
T 4fdd_A 161 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237 (852)
T ss_dssp THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 22 1112245566677778899999988777765532 111100111122334556665543322 5678888888
Q ss_pred HHHHHHhhCHHHHH
Q 010785 434 VRKIFSDIDPELFE 447 (501)
Q Consensus 434 vlk~l~e~D~~lf~ 447 (501)
++..+.+..|+.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 88888887776544
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=85.86 E-value=41 Score=36.05 Aligned_cols=227 Identities=12% Similarity=0.106 Sum_probs=112.7
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccC---------
Q 010785 208 LLDLFDSEDPREREYLKTVLHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA--------- 277 (501)
Q Consensus 208 LL~LFdSeDpRERd~LKtiLHriYgKf~~-~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa--------- 277 (501)
|.+.+.++|++.|...-.+|.++..++.. .++++.+.|-..+...+.. ....-....++++++++....
T Consensus 229 l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 34456789999998777777776654432 3456663333344444322 222223456777777765310
Q ss_pred --CC-----cHHHHHHHHHHHhhcCCCCCc------cccchHHHHHHHHHHHHhCc-ccHHHHHHHhhccCCCCCchHHh
Q 010785 278 --LP-----LKEEHKLFLVRALIPLHKPKC------VAMYHQQLSYCITQFVEKDC-KLADTVIRGLLKYWPVTNSTKEV 343 (501)
Q Consensus 278 --lP-----LKeEHk~Fl~rvLiPLHk~k~------l~~Yh~qL~yCi~qFveKDp-~La~~vi~gLLk~WP~tns~KEv 343 (501)
.| .-..+...+..+|+...+... -......-..|+..+...-+ .+...++..+...---.+...-.
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 00 001111222333433332210 00111122233333322211 23333443333221112222222
Q ss_pred HHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhc--cccccccchHHHHHhhhh
Q 010785 344 MFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQN--RKVILPIIFPALERNARK 421 (501)
Q Consensus 344 ~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n--~~~IlPii~paL~~~s~~ 421 (501)
.-+.-+..|.+.+.++.+...+..+...|..++.++|..|-++|+..+. .+...+... ....++-++|.|.+....
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 2234466666666667788888888889999999999999988865432 333333322 133455566666665554
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 010785 422 HWNQAVQSLTLNVRKIFS 439 (501)
Q Consensus 422 HWn~~V~~l~~nvlk~l~ 439 (501)
+ ..|+..+..++..+.
T Consensus 466 ~--~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 466 H--PKVATNCSWTIINLV 481 (861)
T ss_dssp C--HHHHHHHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHH
Confidence 4 567766666554443
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=79.25 E-value=67 Score=34.40 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcH-HHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhh
Q 010785 345 FLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHF-QVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHW 423 (501)
Q Consensus 345 FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hf-QVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HW 423 (501)
.+.=|..++..+.. ++......++..+-..+++.+. .|-+.|+..+. .+.......-...+|-++|.|.+... +=
T Consensus 576 ~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l~-~~ 651 (861)
T 2bpt_A 576 ILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKALN-QV 651 (861)
T ss_dssp HHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHhc-cc
Confidence 34445555555543 5666677788888888877765 67777776653 23333322222233445555544332 22
Q ss_pred hHHHHHHHHHHHHHHH
Q 010785 424 NQAVQSLTLNVRKIFS 439 (501)
Q Consensus 424 n~~V~~l~~nvlk~l~ 439 (501)
+..++..+..++..+.
T Consensus 652 ~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 652 DSPVSITAVGFIADIS 667 (861)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3346666665555433
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=78.95 E-value=74 Score=34.12 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCc--HHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhh
Q 010785 347 GELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSH--FQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWN 424 (501)
Q Consensus 347 ~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~h--fQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn 424 (501)
.=+..+...+..++|...+..++..+..++.+.+ -.|-+.|+..+.+ +.......-...++-++|.|......+=+
T Consensus 586 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 663 (876)
T 1qgr_A 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYAE 663 (876)
T ss_dssp HHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcch
Confidence 3344455555546777777788888888887764 2456666665432 22222222222233344444444332213
Q ss_pred HHHHHHHHHHHH
Q 010785 425 QAVQSLTLNVRK 436 (501)
Q Consensus 425 ~~V~~l~~nvlk 436 (501)
..|+..+..++.
T Consensus 664 ~~vr~~a~~~l~ 675 (876)
T 1qgr_A 664 YQVCLAAVGLVG 675 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 446655554443
No 14
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.82 E-value=33 Score=33.75 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=64.1
Q ss_pred ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccc----cccchHHHHHhhhhhhhHHHHHHHH
Q 010785 357 QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVI----LPIIFPALERNARKHWNQAVQSLTL 432 (501)
Q Consensus 357 ~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~I----lPii~paL~~~s~~HWn~~V~~l~~ 432 (501)
.+++...+..-+|+-++-=+.+.|++|+.++|.+.+ +++..+.+....+ ...++|.|..-. +|=++.||+.+.
T Consensus 77 ~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-Gd~k~~vR~~~r 153 (266)
T 2of3_A 77 SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-GEAKDNMRTSVR 153 (266)
T ss_dssp CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-GCSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-CCChHHHHHHHH
Confidence 345555666667887665555779999999998875 4555444421111 355677765422 666899999999
Q ss_pred HHHHHHHhh-CHH-HHHHHHHHH
Q 010785 433 NVRKIFSDI-DPE-LFEECLLKF 453 (501)
Q Consensus 433 nvlk~l~e~-D~~-lf~~~~~~~ 453 (501)
.+++.++++ .|. +|+.+...+
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGG
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999985 455 777777655
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.61 E-value=44 Score=38.27 Aligned_cols=98 Identities=13% Similarity=0.237 Sum_probs=64.9
Q ss_pred HhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHh-------ccccccccchHH
Q 010785 342 EVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQ-------NRKVILPIIFPA 414 (501)
Q Consensus 342 Ev~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~-------n~~~IlPii~pa 414 (501)
..--+..+..+++...++.|.....++...|..|+...+..|+..|+..+. .++..+.. .-...++.++|.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHHHH
Confidence 344567778888888888888887888888888999999999877876553 34433332 111122334555
Q ss_pred HHHhhh-hhhhHHHHHHHHHHHHHHHhh
Q 010785 415 LERNAR-KHWNQAVQSLTLNVRKIFSDI 441 (501)
Q Consensus 415 L~~~s~-~HWn~~V~~l~~nvlk~l~e~ 441 (501)
+..... ...+..||..+..++..+.+.
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 443322 467788998888887777654
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=69.49 E-value=78 Score=36.20 Aligned_cols=180 Identities=11% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCC-------hHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHccc
Q 010785 204 FLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVH-------RPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGF 276 (501)
Q Consensus 204 ill~LL~LFdSeDpRERd~LKtiLHriYgKf~~~-------R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGF 276 (501)
++..|++.+.+++++=|...-..|..|...+... ..+....+ ..+.+.+...+...-....+++|+.+...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~ll-p~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKIT-GRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHH-HHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 4445677777888887887666666666543332 12233322 233344432233333567888888888543
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCc-----ccHHHHHHHhhcc-CCCCCchHHhHHHHHHH
Q 010785 277 ALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDC-----KLADTVIRGLLKY-WPVTNSTKEVMFLGELE 350 (501)
Q Consensus 277 alPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp-----~La~~vi~gLLk~-WP~tns~KEv~FL~Ele 350 (501)
.-.+.+.+ .=+...|+++...+.- .....-..|+..+++.-+ .+...++.+|..- |+ ..-.+=+..|.
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~-~~r~~a~~~l~--- 239 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSM-STTRTYIQCIA--- 239 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSS-CSCTTHHHHHH---
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCch-hHHHHHHHHHH---
Confidence 33333322 2234555665554432 344555677777765432 2455555555542 21 11111233344
Q ss_pred HHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhh
Q 010785 351 EVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLW 391 (501)
Q Consensus 351 eILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~W 391 (501)
.+.... +..|...+..++..+-+++...+-.|-+.|+..|
T Consensus 240 ~l~~~~-~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 240 AISRQA-GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp HHHHHS-SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 444443 3366666666677777777776665555555443
No 17
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=68.09 E-value=44 Score=37.18 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH---HhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Q 010785 196 PHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHR---IYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSI 272 (501)
Q Consensus 196 pHLqlVYeill~LL~LFdSeDpRERd~LKtiLHr---iYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSI 272 (501)
|+.+-+..++.++++.+. .|++=.+..-.++++ .||+-+ -+|+-..+.-+.-. |+.. +....|++++.|
T Consensus 687 ~~~~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~~--~p~l~~~~~~l~~~--~~~~---~~~~~l~l~~~~ 758 (971)
T 2x1g_F 687 LVMQRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSSF--QPMLQDLCLFIVAS--FQTR---CCAPTLEISKTA 758 (971)
T ss_dssp HHHHTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHH--CC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhhc--cccHHHHHHHHHHH--HhcC---CchHHHHHHHHH
Confidence 446666666677777653 233444444557777 555533 35665555433322 2332 236699999999
Q ss_pred HcccCCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHHHHHH--------hCcccHHHHHHHhhccCCCCCchHHhH
Q 010785 273 INGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVE--------KDCKLADTVIRGLLKYWPVTNSTKEVM 344 (501)
Q Consensus 273 InGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFve--------KDp~La~~vi~gLLk~WP~tns~KEv~ 344 (501)
+.+|.. .+++...+.. +..+++.++...+. .+|.+...
T Consensus 759 i~~~~~--~~~~~~~l~~-------------~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~------------------- 804 (971)
T 2x1g_F 759 IVMFFK--DEGCKPLMQQ-------------LLREFIQHSFKLFESTPEQNFSNISDTMET------------------- 804 (971)
T ss_dssp HTTCCC-------HHHHH-------------HHHHHHHHHHHHHTSCTTTHHHHTHHHHHH-------------------
T ss_pred HHHhCC--CcchHHHHHH-------------HHHHHHHHHHHHHhcccccCCccCchHHHH-------------------
Confidence 999865 1112111111 11222222222222 23333333
Q ss_pred HHHHHHHHHhcCChhhH-Hhh-hHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010785 345 FLGELEEVLESTQPGEF-QRC-MVPLFHQIGRCLSSSHFQVAERALFLWNN 393 (501)
Q Consensus 345 FL~EleeILe~~~~~eF-~~i-~~pLF~~la~Ci~S~hfQVAERAL~~WnN 393 (501)
|++-+..++...+..-| ... ...+|.....|+..+|.-++..|+.+|.+
T Consensus 805 ~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~ 855 (971)
T 2x1g_F 805 FFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTH 855 (971)
T ss_dssp HHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34444444443322111 133 46788888889999998889999999965
No 18
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=67.10 E-value=1.4e+02 Score=32.11 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-------HHhhccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHH
Q 010785 129 DIKRQTLVELVDYVSSANGKFPEVVMQEMVKMV-------SANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVV 201 (501)
Q Consensus 129 eiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mv-------s~NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlV 201 (501)
+.|+-+=+=|-.|+..- ..+.+..+..+++.| .++-+|.||..-+ + .|+.=|
T Consensus 43 k~K~LaaQ~I~kffk~F-P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck-----------------~---~~i~ki 101 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHF-PELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT-----------------G---ENLPRV 101 (507)
T ss_dssp HHHHHHHHHHHHHGGGC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC-----------------T---TCHHHH
T ss_pred HHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh-----------------h---hhhhhH
Confidence 44555555555555542 235566666666665 5666777774431 2 457888
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHhh
Q 010785 202 YEFLLRLLDLFDSEDPREREYLKTVLHRIYG 232 (501)
Q Consensus 202 Yeill~LL~LFdSeDpRERd~LKtiLHriYg 232 (501)
-++|.+|| .++|+.|++.++..|..+|.
T Consensus 102 aDvL~QlL---qtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 102 ADILTQLL---QTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHT---TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hccchHHHHHHHHHHHHHHh
Confidence 88866554 59999999999998888774
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=66.07 E-value=1.1e+02 Score=32.22 Aligned_cols=174 Identities=13% Similarity=0.147 Sum_probs=104.4
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHH
Q 010785 204 FLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEE 283 (501)
Q Consensus 204 ill~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeE 283 (501)
++..|++...+.|..-|..+-.-++++=.||...-.| .+ +.+.+++-.. .-.-..|.+..++.|+.++. -+++.
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~---~v-~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p-~~~~~ 427 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER---CV-STLLDLIQTK-VNYVVQEAIVVIRDIFRKYP-NKYES 427 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH---HH-HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSC-SSCCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH---HH-HHHHHHHccc-chHHHHHHHHHHHHHHHHCc-chHHH
Confidence 3356777888889988888888888888776432222 22 3445555322 11225677778888887653 22222
Q ss_pred HHHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHh
Q 010785 284 HKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQR 363 (501)
Q Consensus 284 Hk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~ 363 (501)
-...|...|-.+. ...-.....+|+-+|.+.-+. ...+++.+++.....++.=+...|.-+-.+....+. +-+.
T Consensus 428 ~v~~L~~~l~~~~----~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~~ 501 (591)
T 2vgl_B 428 IIATLCENLDSLD----EPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQE 501 (591)
T ss_dssp THHHHHHTTTTCC----SHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTHH
T ss_pred HHHHHHHHHHhcc----CHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHHH
Confidence 2223333321111 112256677888888665443 578899999888766555455566777777665432 2223
Q ss_pred hhHHHHHHHHHHh-CCCcHHHHHHHHhhhc
Q 010785 364 CMVPLFHQIGRCL-SSSHFQVAERALFLWN 392 (501)
Q Consensus 364 i~~pLF~~la~Ci-~S~hfQVAERAL~~Wn 392 (501)
.... .+.+|. +|.+..|=+||..+|.
T Consensus 502 ~i~~---ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 502 LVQQ---VLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHH---HHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHH---HHHHhhhcCCChHHHHHHHHHHH
Confidence 2223 344564 5789999999998885
No 20
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=64.07 E-value=17 Score=32.15 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHhCcccHHHHHHHhhccCCC--CCchHHhHHHHHHHHHHhcCC-------hhhHHhhhHHHHHHHHHHhCCCcHHHHH
Q 010785 315 FVEKDCKLADTVIRGLLKYWPV--TNSTKEVMFLGELEEVLESTQ-------PGEFQRCMVPLFHQIGRCLSSSHFQVAE 385 (501)
Q Consensus 315 FveKDp~La~~vi~gLLk~WP~--tns~KEv~FL~EleeILe~~~-------~~eF~~i~~pLF~~la~Ci~S~hfQVAE 385 (501)
|+-....-+..++..+.++==. +++.|-+-+|.-+.+|+..+- -..|.++++++|..+....++.+-+..+
T Consensus 28 W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~ 107 (142)
T 2km4_A 28 WLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLS 107 (142)
T ss_dssp HHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333344444444444444333 367888999999999997543 1468899999999998887888889999
Q ss_pred HHHhhhcchhH
Q 010785 386 RALFLWNNDHI 396 (501)
Q Consensus 386 RAL~~WnNe~i 396 (501)
|-+.+|..-.+
T Consensus 108 rvl~iWeer~v 118 (142)
T 2km4_A 108 RVVNILKERNI 118 (142)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHhhccCC
Confidence 99999976544
No 21
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=56.76 E-value=15 Score=31.60 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=57.4
Q ss_pred HHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCC------hhhHHhhhHHHHHHHHHHhCCCcHHHHHHH
Q 010785 314 QFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQ------PGEFQRCMVPLFHQIGRCLSSSHFQVAERA 387 (501)
Q Consensus 314 qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~------~~eF~~i~~pLF~~la~Ci~S~hfQVAERA 387 (501)
+|+-...+-++.++..+.++=-.+.+.+-+-+|.-+.+|+-..- -..|.++++++|..+.+..+..+-+...|-
T Consensus 28 ~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kl 107 (135)
T 4fu3_A 28 LWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERL 107 (135)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34434444455555555555455666777889999999986441 145889999999999888888888888999
Q ss_pred Hhhhcc
Q 010785 388 LFLWNN 393 (501)
Q Consensus 388 L~~WnN 393 (501)
+.+|..
T Consensus 108 l~iW~~ 113 (135)
T 4fu3_A 108 LNIWQE 113 (135)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999985
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=51.84 E-value=1.1e+02 Score=28.67 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=61.4
Q ss_pred HHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccc------ccc-ccchHHHHHhhh
Q 010785 348 ELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRK------VIL-PIIFPALERNAR 420 (501)
Q Consensus 348 EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~------~Il-Pii~paL~~~s~ 420 (501)
-+..+++.++|.........++..|..++.+.+.||=+.|+.+.. .++..... ..+ |-|+|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~-----~~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN-----ASMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH-----HHHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-----HHHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 355666666652211114467777778899999999998886643 33333221 135 77778787755
Q ss_pred hhhhHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH
Q 010785 421 KHWNQAVQSLTLNVRKIFSD-IDPELFEECLLKF 453 (501)
Q Consensus 421 ~HWn~~V~~l~~nvlk~l~e-~D~~lf~~~~~~~ 453 (501)
++=+..||..|...+-.++. +..+-+.......
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34488899999988877663 3333344444433
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=51.07 E-value=1.8e+02 Score=28.19 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHH-HHHHHHHhhhhcccCCCCCHHHHHHHHHHHHccc
Q 010785 204 FLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSIINGF 276 (501)
Q Consensus 204 ill~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIR-k~Innif~~fiyEte~~nGIaELLeIlgSIInGF 276 (501)
.+-.|+.++.++|+.-|...-..|..+-+.....|..+. ..+-..+.+++..+....-....+..|+.+..+-
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 345678888899999999988888888765433343322 1222345555542222222345667777777553
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=48.03 E-value=40 Score=30.84 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCC---hhhHHhhhHHHHHHHHHHhC-CCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhh
Q 010785 344 MFLGELEEVLESTQ---PGEFQRCMVPLFHQIGRCLS-SSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNA 419 (501)
Q Consensus 344 ~FL~EleeILe~~~---~~eF~~i~~pLF~~la~Ci~-S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s 419 (501)
.=+..|..+++..+ ..++. .++..|.+++. .+|.+|.+.|+.... .+...+...-....+.++|+|.+..
T Consensus 34 ~a~~~L~~l~~~~~~~~~~~~~----~i~~~L~~~l~kd~~~~V~~~a~~~l~--~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 34 ESLEVLEKLLTDHPKLENGEYG----ALVSALKKVITKDSNVVLVAMAGKCLA--LLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp HHHHHHHHHHHHCSSBCCCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCCHH----HHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34566777776532 22333 45666677775 889999888887653 3333333322334455666666654
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhC
Q 010785 420 RKHWNQAVQSLTLNVRKIFSDID 442 (501)
Q Consensus 420 ~~HWn~~V~~l~~nvlk~l~e~D 442 (501)
... ++.||..+..++.-+.+.-
T Consensus 108 ~d~-~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 108 KEK-KPNVVTALREAIDAIYAST 129 (242)
T ss_dssp GCC-CHHHHHHHHHHHHHHHTTS
T ss_pred cCC-CHHHHHHHHHHHHHHHHcC
Confidence 432 6788888888888777643
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=43.99 E-value=3.8e+02 Score=29.84 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHHHhhccc-CChHHHHHHHHH---HHhhhhcccCCCCCHHHHHHHH
Q 010785 196 PHLQVVYEFLLRLLDLFDS--EDPREREYLKTVLHRIYGKFM-VHRPFIRKAINN---IFYRFIFETEKHNGIAELLEIL 269 (501)
Q Consensus 196 pHLqlVYeill~LL~LFdS--eDpRERd~LKtiLHriYgKf~-~~R~fIRk~Inn---if~~fiyEte~~nGIaELLeIl 269 (501)
||+.-+.+-|.++++...+ ++..|.+++-..|.++-..+- ...||+-..+.. ++.+..-+.+...=...++|.+
T Consensus 544 p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l 623 (960)
T 1wa5_C 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (960)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 7777777666666654321 112255677777776644321 122444443332 3322211111111124589999
Q ss_pred HHHHcc
Q 010785 270 GSIING 275 (501)
Q Consensus 270 gSIInG 275 (501)
|+|+..
T Consensus 624 ~~l~~~ 629 (960)
T 1wa5_C 624 GAILNY 629 (960)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999986
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.97 E-value=3e+02 Score=29.24 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=91.8
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHK 285 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk 285 (501)
..|++.+.+.|+.=|..+-..++++-.||...-.|.-. .+.+++-.... .-..|++..+..|+... .-+++.-.
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~~~-~v~~~~~~~l~~ii~~~-p~l~~~~v 461 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTAGS-YVRDDAVPNLIQLITNS-VEMHAYTV 461 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHTGG-GSCSSHHHHHHHHHHHS-CSTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhccc-hhHHHHHHHHHHHHhcC-hhHHHHHH
Confidence 34555555677777777777888887777554333221 22233332221 12234555666666432 23333322
Q ss_pred HHHHHHhhcCCCCCccccchHHHHHHHHHHHHh--------------CcccHHHHHHHhhccCCCCCchHHhHHHHHHHH
Q 010785 286 LFLVRALIPLHKPKCVAMYHQQLSYCITQFVEK--------------DCKLADTVIRGLLKYWPVTNSTKEVMFLGELEE 351 (501)
Q Consensus 286 ~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveK--------------Dp~La~~vi~gLLk~WP~tns~KEv~FL~Elee 351 (501)
.-|...|---.... . ...-.++|+-+|.+. +|+.+..++..+++.+ ..++.=...-|.=+-.
T Consensus 462 ~~L~~~l~~~~~~~--~-~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~K 537 (618)
T 1w63_A 462 QRLYKAILGDYSQQ--P-LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMK 537 (618)
T ss_dssp HHHHHHHHHCCSCS--H-HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccH--H-HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHH
Confidence 22333332101111 1 123578888888652 3445566677777655 2333323344444444
Q ss_pred HHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010785 352 VLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNN 393 (501)
Q Consensus 352 ILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnN 393 (501)
+.-..+ +. ...+-+.|.+|.+|.+..|=+||..+|+-
T Consensus 538 l~~~~~-~~----~~~l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 538 LSTRFT-CT----VNRIKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp HHTTCS-SC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHhCc-ch----HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444332 21 23344557778999999999999999974
No 27
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=39.30 E-value=4.4e+02 Score=29.29 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcc
Q 010785 194 AWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKF 234 (501)
Q Consensus 194 aWpHLqlVYeill~LL~LFdSeDpRERd~LKtiLHriYgKf 234 (501)
.||-| +-.|+.++.|.|+..+.-.-.+||.|..++
T Consensus 120 ~Wp~l------l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 120 RWPTL------LSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TCTTH------HHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred chhHH------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 49863 456888899999888888888889888755
No 28
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=39.21 E-value=96 Score=27.71 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=65.2
Q ss_pred HHHHHhhccCCCCCchHHhHHHHHHHHHHhcC-ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHH
Q 010785 325 TVIRGLLKYWPVTNSTKEVMFLGELEEVLEST-QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN------NDHIE 397 (501)
Q Consensus 325 ~vi~gLLk~WP~tns~KEv~FL~EleeILe~~-~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn------Ne~i~ 397 (501)
.-|+.--+.=|...+.|. |++|...+ +.++|..||.-|.+||.. ...+-.+.-.||.+.. +|.++
T Consensus 8 ~~VreAT~~d~wGP~~~~------m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv 79 (144)
T 1eyh_A 8 IKVREATSNDPWGPSSSL------MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVS 79 (144)
T ss_dssp HHHHHHTCSSSSCCCHHH------HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHH------HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHH
Confidence 334444444455555543 45666665 678999999999998852 2246677778877653 35555
Q ss_pred HHHHhccccccccc-hHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 010785 398 NLIKQNRKVILPII-FPALERNARKHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 398 ~li~~n~~~IlPii-~paL~~~s~~HWn~~V~~l~~nvlk~l~e 440 (501)
.-+.++...|..+= |.-+... -..|-..||.-|..++.+|.|
T Consensus 80 ~~~~~~~~~i~~L~~F~y~d~~-g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 80 QQCKENMYAVQTLKDFQYVDRD-GKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHHHTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHhhhccceeeCCC-ccchHHHHHHHHHHHHHHHCC
Confidence 55555443332210 1111112 236888999999999999876
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=36.24 E-value=1.7e+02 Score=32.12 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCC-----CcHHHHHHHHhhhcc
Q 010785 366 VPLFHQIGRCLSS-----SHFQVAERALFLWNN 393 (501)
Q Consensus 366 ~pLF~~la~Ci~S-----~hfQVAERAL~~WnN 393 (501)
..+...+.+|... ..-.|+..|+.+|.+
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 4566677777763 345678888999974
No 30
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=35.92 E-value=26 Score=26.77 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=36.7
Q ss_pred HHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccccchHHHHHHHH
Q 010785 267 EILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCIT 313 (501)
Q Consensus 267 eIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~ 313 (501)
+++.|||..- -|.++||.++...|=-.-..+.+..|||-|.-.|.
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 4677788754 47899999999998888889999999988776654
No 31
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=29.90 E-value=1.5e+02 Score=26.61 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHhcC-ChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHHhccccccccc-hHHHHHhhh
Q 010785 349 LEEVLEST-QPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN------NDHIENLIKQNRKVILPII-FPALERNAR 420 (501)
Q Consensus 349 leeILe~~-~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn------Ne~i~~li~~n~~~IlPii-~paL~~~s~ 420 (501)
+.+|...+ +..+|..||.-|.+||...- ..+-...-.||.+.. .|.++.-+.+|...|=.+- |.-.... -
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~-G 109 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQ-G 109 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGGCCCBCTT-S
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccCCC-C
Confidence 45666655 78899999999999987421 235677777777653 3555555555543222110 0001111 2
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 010785 421 KHWNQAVQSLTLNVRKIFSD 440 (501)
Q Consensus 421 ~HWn~~V~~l~~nvlk~l~e 440 (501)
..|-..||..|..++.++.|
T Consensus 110 ~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 110 RDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHHcC
Confidence 36889999999999999876
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=29.58 E-value=3.9e+02 Score=25.74 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhcc--ccccccchHHHHH
Q 010785 347 GELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNR--KVILPIIFPALER 417 (501)
Q Consensus 347 ~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~--~~IlPii~paL~~ 417 (501)
.=|..+.+.+.++.+...+..++..|..+++++|..|-.+|+.... .+...+.+.. ..-++-++|.|.+
T Consensus 388 ~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp HHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHHH
Confidence 3444555555555566666678888899999999998888776543 3444443321 2234445555543
No 33
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=27.84 E-value=4.9e+02 Score=29.28 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHHHhhcCCCCCc--------cccchHHHHHHHHHHHHh-----CcccHHHHHHHhhccCCCCCchHH--h
Q 010785 279 PLKEEHKLFLVRALIPLHKPKC--------VAMYHQQLSYCITQFVEK-----DCKLADTVIRGLLKYWPVTNSTKE--V 343 (501)
Q Consensus 279 PLKeEHk~Fl~rvLiPLHk~k~--------l~~Yh~qL~yCi~qFveK-----Dp~La~~vi~gLLk~WP~tns~KE--v 343 (501)
.|.+|.+..++..|+.+..... -.....+|+.|+...+.. -|.+...++..+ -.....+| .
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~~~~~~~~~~l 158 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----SSSVNVCENNM 158 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----ccChHHHHHHH
Confidence 4567788887777777654321 123467788888776555 344444443332 11112244 2
Q ss_pred HHHHHHHHHHhcCCh------------hhHHhhhHHHHHHHHHHhCC-CcHHHHHHHHhh
Q 010785 344 MFLGELEEVLESTQP------------GEFQRCMVPLFHQIGRCLSS-SHFQVAERALFL 390 (501)
Q Consensus 344 ~FL~EleeILe~~~~------------~eF~~i~~pLF~~la~Ci~S-~hfQVAERAL~~ 390 (501)
.+|.-|-|.+..... +.|..-...+|..+..|+.+ .+..|...||..
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 234333322221111 33455566677777777764 345566655543
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.76 E-value=86 Score=35.88 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccC
Q 010785 199 QVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA 277 (501)
Q Consensus 199 qlVYeill~LL~LFdSeDpRERd~LKtiLHriYgKf~~-~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa 277 (501)
+=+.+.+++.++.|. .|.+=||.....+||+...+.. .-|++-+.|..+. ..-...+.++.|.++|.||..|.
T Consensus 698 ~~~~~~il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-----~~~~~~e~~~fL~l~~qli~~f~ 771 (980)
T 3ibv_A 698 NKASDEIFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-----NSIDMNELVDVLSFISQLIHIYK 771 (980)
T ss_dssp HHHHHHHHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-----HHCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444466777765 4566677789999999885422 2344555555443 22246779999999999999995
Q ss_pred CCcHHHHHHHHHHHhhcCC
Q 010785 278 LPLKEEHKLFLVRALIPLH 296 (501)
Q Consensus 278 lPLKeEHk~Fl~rvLiPLH 296 (501)
.++..+|...|-||.
T Consensus 772 ----~~~~~~l~~ll~~l~ 786 (980)
T 3ibv_A 772 ----DNMMEITNRMLPTLL 786 (980)
T ss_dssp ----TTSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 446666666666654
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=27.17 E-value=4.8e+02 Score=29.39 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhccc-CCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcC--C
Q 010785 220 REYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFET-EKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPL--H 296 (501)
Q Consensus 220 Rd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEt-e~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPL--H 296 (501)
|..+.++|..++..+. .-+-..+.+.+-+++-.+ ....-+.-.|-.+|+|-.|...+....+..-+...|+.| +
T Consensus 430 ~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~ 506 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK 506 (1049)
T ss_dssp HHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence 4456777777764321 123333334444443211 111224457788999887653222122333344444443 2
Q ss_pred CCCcc--ccchHHHHHHHHHH---HHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCC-------hhhHHhh
Q 010785 297 KPKCV--AMYHQQLSYCITQF---VEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQ-------PGEFQRC 364 (501)
Q Consensus 297 k~k~l--~~Yh~qL~yCi~qF---veKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~-------~~eF~~i 364 (501)
+.... ........+++.+| +..+|....+++.+|+..---++..=+..=-.-+..+.+.+. +.+....
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~ 586 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH
Confidence 22111 12222355677755 567888889999988876322222222222223333333322 2222355
Q ss_pred hHHHHHHHHHHhCC
Q 010785 365 MVPLFHQIGRCLSS 378 (501)
Q Consensus 365 ~~pLF~~la~Ci~S 378 (501)
..+|...+..+++.
T Consensus 587 ~~~il~~l~~~~~~ 600 (1049)
T 3m1i_C 587 IQTIIRDIQKTTAD 600 (1049)
T ss_dssp HHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777766665
No 36
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=26.65 E-value=1.5e+02 Score=26.11 Aligned_cols=90 Identities=11% Similarity=0.150 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCCh---hhHHhhhHHHHHHHHHHhCCCcH
Q 010785 305 HQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQP---GEFQRCMVPLFHQIGRCLSSSHF 381 (501)
Q Consensus 305 h~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~---~eF~~i~~pLF~~la~Ci~S~hf 381 (501)
.++...-++.+......-+..++..+.+|=-++++.+=+-+|.-+..|+-.+.. ..|.+.+.++|...-+++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344444556666667777777777777776678888889999999999976643 46888889999988887765555
Q ss_pred HHHHHHHhhhcch
Q 010785 382 QVAERALFLWNND 394 (501)
Q Consensus 382 QVAERAL~~WnNe 394 (501)
+--.|-+..|..-
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6667888888754
No 37
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.55 E-value=5.1e+02 Score=26.12 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCcHHHHHHHH--HHHhhcCCCCCccccchHHHHHHHHHHHHhCcccHHHHHHHhhccCC
Q 010785 258 KHNGIAELLEILGSIINGFALPLKEEHKLFL--VRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWP 335 (501)
Q Consensus 258 ~~nGIaELLeIlgSIInGFalPLKeEHk~Fl--~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP 335 (501)
.+.|-.|..+++..+++-|+.+-.+.-|.-+ ...+.+. .+.+..++..+.||-.=..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~----------~~e~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI----------AEDVIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT----------SSCGGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhhcCCCcHhHHHHH----
Confidence 4667788999999999999988877655433 3334343 23334667778887766667888874
Q ss_pred CCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHHhccccccccchHHH
Q 010785 336 VTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPAL 415 (501)
Q Consensus 336 ~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL 415 (501)
|.=|-.| .+++ +..++..-+-+|+.+.|.-|.-.|+.- +..|+..+.+.+- -.+..+
T Consensus 125 ----------LRtL~~I---~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~-----~~kL~~~~pe~v~-~~~~~l 181 (355)
T 3tjz_B 125 ----------VRALCQI---TDST----MLQAIERYMKQAIVDKVPSVSSSALVS-----SLHLLKCSFDVVK-RWVNEA 181 (355)
T ss_dssp ----------HHHHHHH---CCTT----THHHHHHHHHHHHTCSSHHHHHHHHHH-----HHHHTTTCHHHHH-TTHHHH
T ss_pred ----------HHHHhcC---CCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHhccCHHHHH-HHHHHH
Confidence 2223333 2232 455788889999999999999999876 3344444444332 234444
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 010785 416 ERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKF 453 (501)
Q Consensus 416 ~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~ 453 (501)
.+.. .-=|..|..-|..++--+.+.|+..+.+....+
T Consensus 182 ~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l 218 (355)
T 3tjz_B 182 QEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKF 218 (355)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4322 223556666566666666667776666665544
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=25.05 E-value=5.4e+02 Score=25.94 Aligned_cols=181 Identities=11% Similarity=0.054 Sum_probs=84.9
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHhhcccCChHHHHH-HHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHH
Q 010785 206 LRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRK-AINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEH 284 (501)
Q Consensus 206 l~LL~LFdSeDpRERd~LKtiLHriYgKf~~~R~fIRk-~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEH 284 (501)
-.|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+.+.+.. ....-....+..|+.+..+-........
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 45666667888888888888888887643333433222 122234444432 1112234456777777766422223333
Q ss_pred HHHHHHHhhcCCCCCccccchHHHHHHHHHHHHhCc---------ccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhc
Q 010785 285 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDC---------KLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLES 355 (501)
Q Consensus 285 k~Fl~rvLiPLHk~k~l~~Yh~qL~yCi~qFveKDp---------~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~ 355 (501)
..-....|+.|.+...-. -......|+......++ .+...++.. +++ .+..-...-+.-|..+...
T Consensus 255 ~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp HGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SCHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CChhhHHHHHHHHHHHHcC
Confidence 333345566665544321 11222334433333322 233333332 322 1111011111222222211
Q ss_pred CChhhHHhhh-HHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010785 356 TQPGEFQRCM-VPLFHQIGRCLSSSHFQVAERALFLWNN 393 (501)
Q Consensus 356 ~~~~eF~~i~-~pLF~~la~Ci~S~hfQVAERAL~~WnN 393 (501)
.+...+.+. ..+...|..++.+++..|-+.|+....|
T Consensus 330 -~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 330 -NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 122222221 2356677788899999998888766544
No 39
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.27 E-value=91 Score=27.89 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHHhccccccccc-hHHHHHh
Q 010785 346 LGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWN------NDHIENLIKQNRKVILPII-FPALERN 418 (501)
Q Consensus 346 L~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL~~Wn------Ne~i~~li~~n~~~IlPii-~paL~~~ 418 (501)
++||-.+.-.-..+.|+.||.-|+++|.. .|+| |--.||.+.. ++.|+.-+..|...|=-.. |-....-
T Consensus 32 m~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 32 LEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCT
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 55666555444345578999999999876 3444 6667776653 5778888877765332111 1111110
Q ss_pred hh-hhhhHHHHHHHHHHHHHHHhhC
Q 010785 419 AR-KHWNQAVQSLTLNVRKIFSDID 442 (501)
Q Consensus 419 s~-~HWn~~V~~l~~nvlk~l~e~D 442 (501)
.+ .-.++.||.-|..+++++.+-+
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred ccccchhHHHHHHHHHHHHHHhCcC
Confidence 11 3567889999999999876644
No 40
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=21.06 E-value=5.6e+02 Score=24.65 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=56.6
Q ss_pred HHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhH--HHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHH
Q 010785 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVM--FLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERA 387 (501)
Q Consensus 310 yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~--FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERA 387 (501)
..-..-+.+||.|...++++++-+ .+++.-||- -.+-|+|+.- -.++-..+++ .-|..-++...-.|..+|
T Consensus 38 qa~el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~-~k~~l~~~~l----~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 38 KVQETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCK-VKVELLPHVI----NVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHH-HCGGGHHHHH----HHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHcCCCHHHHHHH
Confidence 333444678999999999999987 334433332 2333444441 1222222322 223223345555566555
Q ss_pred HhhhcchhHHHHHHhccccccccchHHHHHhh------hhhhhHHHHHHHHHHHHH
Q 010785 388 LFLWNNDHIENLIKQNRKVILPIIFPALERNA------RKHWNQAVQSLTLNVRKI 437 (501)
Q Consensus 388 L~~WnNe~i~~li~~n~~~IlPii~paL~~~s------~~HWn~~V~~l~~nvlk~ 437 (501)
+.. ...|||.+|--+..+. ...|+.- ..+-..++.+
T Consensus 111 I~~-------------~~~iY~~~l~~i~~~~~~~~~~~~~W~~m-~~lK~~Il~~ 152 (257)
T 3gs3_A 111 IQA-------------CGSIYKNGLQYLCSLMEPGDSAEQAWNIL-SLIKAQILDM 152 (257)
T ss_dssp HHH-------------HHHHHHHHHHHHTTSSSCCHHHHHHHHHH-HHHHHHHHHG
T ss_pred HHH-------------HHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHHHH
Confidence 543 4445666666666554 3577643 3455555555
No 41
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.54 E-value=1.7e+02 Score=24.85 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=49.7
Q ss_pred HHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCC---hhh----HHhhhHHHHHHHHHHhCCCcHHHHH
Q 010785 313 TQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQ---PGE----FQRCMVPLFHQIGRCLSSSHFQVAE 385 (501)
Q Consensus 313 ~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~---~~e----F~~i~~pLF~~la~Ci~S~hfQVAE 385 (501)
.+|+-...+-+..++..+.++=-.+.+.+-+-+|.-+.+|+-... ..+ |++++..+|..++ +..+-+-..
T Consensus 28 s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~---~~~~~~kl~ 104 (132)
T 4flb_A 28 SSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK---DPSVSKSVE 104 (132)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC---STTTHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 344444455556666666665556777888999999999997652 233 4455555554432 445666778
Q ss_pred HHHhhhcc
Q 010785 386 RALFLWNN 393 (501)
Q Consensus 386 RAL~~WnN 393 (501)
|-+.+|..
T Consensus 105 ~ll~iW~~ 112 (132)
T 4flb_A 105 RIFKIWED 112 (132)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 88999975
Done!