Query 010786
Match_columns 501
No_of_seqs 173 out of 421
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 04:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 6.9E-59 1.5E-63 468.6 24.9 164 9-172 3-166 (336)
2 KOG2057 Predicted equilibrativ 100.0 7.5E-51 1.6E-55 409.2 24.3 162 9-170 5-170 (499)
3 cd03571 ENTH_epsin ENTH domain 100.0 1.5E-48 3.2E-53 346.4 13.2 123 27-149 1-123 (123)
4 PF01417 ENTH: ENTH domain; I 100.0 1.7E-42 3.7E-47 302.8 14.7 124 25-148 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 1.4E-34 3E-39 253.3 13.1 126 26-152 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 4.8E-25 1E-29 196.6 10.5 113 30-145 4-120 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 9.4E-23 2E-27 175.1 11.5 113 29-144 2-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 5.4E-19 1.2E-23 153.8 10.8 112 28-142 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.8 2.7E-08 5.8E-13 96.9 9.1 113 26-139 2-117 (280)
10 KOG0251 Clathrin assembly prot 98.4 1.5E-06 3.3E-11 93.6 11.8 117 24-142 20-138 (491)
11 PF00790 VHS: VHS domain; Int 98.1 1.4E-05 3E-10 72.0 7.9 109 25-142 3-116 (140)
12 smart00288 VHS Domain present 97.6 0.0005 1.1E-08 61.9 10.2 107 29-142 2-109 (133)
13 cd03568 VHS_STAM VHS domain fa 97.6 0.00042 9E-09 63.8 9.8 107 29-143 2-109 (144)
14 cd03569 VHS_Hrs_Vps27p VHS dom 97.5 0.0011 2.3E-08 60.8 11.3 111 25-143 2-113 (142)
15 cd03561 VHS VHS domain family; 97.5 0.0012 2.5E-08 59.3 10.5 109 29-143 2-111 (133)
16 cd03565 VHS_Tom1 VHS domain fa 97.3 0.0034 7.3E-08 57.5 11.9 127 28-159 2-134 (141)
17 cd03567 VHS_GGA VHS domain fam 97.3 0.0032 7E-08 57.9 11.5 110 28-143 2-115 (139)
18 KOG1087 Cytosolic sorting prot 96.7 0.0098 2.1E-07 64.5 10.7 108 28-142 2-110 (470)
19 KOG2199 Signal transducing ada 94.1 0.52 1.1E-05 50.9 11.5 126 25-160 6-138 (462)
20 PLN03131 hypothetical protein; 89.5 6.3 0.00014 45.0 13.5 51 358-411 359-410 (705)
21 KOG0980 Actin-binding protein 82.4 2.4 5.2E-05 49.6 6.0 107 30-140 9-115 (980)
22 cd03562 CID CID (CTD-Interacti 81.2 8.5 0.00018 33.2 7.7 105 27-144 3-108 (114)
23 KOG1086 Cytosolic sorting prot 80.4 6.4 0.00014 43.5 8.0 76 26-107 7-87 (594)
24 smart00582 RPR domain present 72.9 13 0.00028 32.2 6.6 95 43-144 11-107 (121)
25 KOG1924 RhoA GTPase effector D 67.0 24 0.00053 41.6 8.7 111 45-163 368-484 (1102)
26 PF12755 Vac14_Fab1_bd: Vacuol 60.6 35 0.00076 29.7 6.7 75 59-144 23-97 (97)
27 KOG2176 Exocyst complex, subun 60.3 4.6 9.9E-05 46.9 1.6 46 26-78 16-63 (800)
28 KOG1525 Sister chromatid cohes 50.2 88 0.0019 38.8 9.9 144 8-155 382-538 (1266)
29 KOG0624 dsRNA-activated protei 38.0 3.1E+02 0.0067 30.4 10.7 54 44-97 222-284 (504)
30 KOG1818 Membrane trafficking a 37.2 1.1E+02 0.0023 35.4 7.5 126 26-164 7-139 (634)
31 PF06881 Elongin_A: RNA polyme 35.8 53 0.0011 28.8 4.0 42 43-87 19-73 (109)
32 PF08513 LisH: LisH; InterPro 35.1 49 0.0011 22.7 2.9 20 87-106 6-25 (27)
33 COG5218 YCG1 Chromosome conden 34.7 1.2E+02 0.0027 35.3 7.4 90 44-145 27-121 (885)
34 smart00667 LisH Lissencephaly 34.0 45 0.00098 22.0 2.6 21 87-107 9-29 (34)
35 PF01603 B56: Protein phosphat 31.9 2.1E+02 0.0045 30.8 8.4 113 26-145 251-371 (409)
36 COG5602 SIN3 Histone deacetyla 31.8 1.6E+02 0.0034 35.7 7.8 77 9-86 569-658 (1163)
37 KOG2160 Armadillo/beta-catenin 30.4 3.4E+02 0.0075 29.3 9.5 80 18-97 158-243 (342)
38 PF12755 Vac14_Fab1_bd: Vacuol 30.2 1E+02 0.0023 26.8 4.8 63 21-94 32-96 (97)
39 PF08467 Luteo_P1-P2: Luteovir 29.5 65 0.0014 34.4 4.0 41 125-165 138-178 (361)
40 cd04962 GT1_like_5 This family 28.6 70 0.0015 31.2 3.9 33 130-162 322-355 (371)
41 COG4907 Predicted membrane pro 28.3 72 0.0016 35.9 4.3 23 128-150 521-543 (595)
42 cd03817 GT1_UGDG_like This fam 28.0 65 0.0014 30.4 3.5 30 133-162 332-361 (374)
43 PF02847 MA3: MA3 domain; Int 27.8 1.7E+02 0.0038 24.7 5.7 34 61-96 34-67 (113)
44 PF07064 RIC1: RIC1; InterPro 27.7 4.9E+02 0.011 26.6 9.8 70 27-99 117-196 (258)
45 KOG0396 Uncharacterized conser 26.7 4.4E+02 0.0096 29.0 9.6 38 61-98 84-132 (389)
46 PLN03119 putative ADP-ribosyla 26.2 1E+02 0.0022 35.4 5.1 15 89-103 73-87 (648)
47 PF09339 HTH_IclR: IclR helix- 26.0 18 0.0004 27.4 -0.5 26 82-107 2-27 (52)
48 PF10151 DUF2359: Uncharacteri 25.1 76 0.0016 35.2 3.8 58 61-121 166-231 (469)
49 PF03564 DUF1759: Protein of u 24.7 1.1E+02 0.0024 27.2 4.1 83 24-114 24-112 (145)
50 PF07571 DUF1546: Protein of u 24.3 2.4E+02 0.0053 24.2 6.0 53 44-99 26-80 (92)
51 cd03823 GT1_ExpE7_like This fa 24.0 1.1E+02 0.0025 28.7 4.3 67 85-158 277-343 (359)
52 cd03820 GT1_amsD_like This fam 23.7 1E+02 0.0022 28.5 3.9 33 130-162 305-337 (348)
53 smart00346 HTH_ICLR helix_turn 23.0 1.2E+02 0.0026 24.5 3.8 41 81-121 3-51 (91)
54 PF04904 NCD1: NAB conserved r 22.7 77 0.0017 27.7 2.6 39 45-87 33-71 (82)
55 KOG2340 Uncharacterized conser 22.2 1.2E+02 0.0026 34.9 4.6 93 38-142 211-313 (698)
56 cd03814 GT1_like_2 This family 22.1 1.2E+02 0.0026 28.8 4.0 30 130-159 318-347 (364)
57 cd03795 GT1_like_4 This family 21.4 1.4E+02 0.0031 28.6 4.4 29 130-158 318-346 (357)
58 KOG2003 TPR repeat-containing 21.1 4.4E+02 0.0096 30.2 8.5 34 278-311 796-834 (840)
59 KOG2713 Mitochondrial tryptoph 21.1 1.1E+02 0.0023 32.8 3.7 71 47-117 271-344 (347)
60 PRK07764 DNA polymerase III su 21.0 6.6E+02 0.014 30.0 10.4 34 82-115 263-298 (824)
61 TIGR02552 LcrH_SycD type III s 21.0 5E+02 0.011 21.8 9.3 105 23-142 31-135 (135)
62 KOG0037 Ca2+-binding protein, 20.7 1.4E+02 0.003 30.4 4.3 52 30-85 77-132 (221)
63 TIGR03156 GTP_HflX GTP-binding 20.7 4.4E+02 0.0096 27.7 8.2 108 44-161 77-186 (351)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.9e-59 Score=468.62 Aligned_cols=164 Identities=46% Similarity=0.834 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 010786 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAV 88 (501)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtL 88 (501)
.++++|+|+|+|+|++|+++|+|||+||+||+|||++++|.|||++||++.+|.+||.||||||++.||+||||||||+|
T Consensus 3 ~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLtl 82 (336)
T KOG2056|consen 3 MSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALTL 82 (336)
T ss_pred ccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccccccCC
Q 010786 89 IEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSST 168 (501)
Q Consensus 89 LEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~GvsSs 168 (501)
|||||+||||+||+|||+|+++|+.|+.|+|+|++|+|+|++||+||++|+.||+|+++|++||++|+++|.||.|++..
T Consensus 83 leyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~~~ 162 (336)
T KOG2056|consen 83 LEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFGPG 162 (336)
T ss_pred HHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCcc
Q 010786 169 GITY 172 (501)
Q Consensus 169 g~~~ 172 (501)
+..+
T Consensus 163 ~~~~ 166 (336)
T KOG2056|consen 163 SISN 166 (336)
T ss_pred cccc
Confidence 5544
No 2
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.5e-51 Score=409.16 Aligned_cols=162 Identities=37% Similarity=0.726 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC--chhHHHHHHHHHHHhhc-CCCchhhhhhH
Q 010786 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAE-TGKDWRYVYKA 85 (501)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn--~~~y~~IM~vLwKRL~d-~gK~WR~IYKA 85 (501)
..||++..+++++||||+++|.+||||||.|||||++.+|.|||++||. +++|.++|.+||.|+.+ ..+.||+|||+
T Consensus 5 ~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKS 84 (499)
T KOG2057|consen 5 EKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKS 84 (499)
T ss_pred HHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999 99999999999999876 46789999999
Q ss_pred HHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHh-hccccc
Q 010786 86 LAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN-REKYFG 164 (501)
Q Consensus 86 LtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~-R~Ky~G 164 (501)
|+||.|||+||+||||.++|+|+|.|+.|++|+|||+.|||||||||+|.++|+++.+|+++|++||+||++. ++||.|
T Consensus 85 LiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~G 164 (499)
T KOG2057|consen 85 LILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYRG 164 (499)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccCCCC
Q 010786 165 LSSTGI 170 (501)
Q Consensus 165 vsSsg~ 170 (501)
+.+..+
T Consensus 165 ~~qd~m 170 (499)
T KOG2057|consen 165 FDQDDM 170 (499)
T ss_pred cchhhc
Confidence 997654
No 3
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=1.5e-48 Score=346.45 Aligned_cols=123 Identities=51% Similarity=0.940 Sum_probs=121.2
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 27 e~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
|+|++||||||||||||++++|++||++||++.+|.+||++||+||.+.+++||||||||+||||||+||||+||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHH
Q 010786 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQ 149 (501)
Q Consensus 107 hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~Lr 149 (501)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999985
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=1.7e-42 Score=302.76 Aligned_cols=124 Identities=52% Similarity=0.931 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHh-hcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL-~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
||++|++|+||||+|+|||++++|+|||++||++.+|.+||++||+|| ...+++||++||||+||+|||+||+++|+.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 7789999999999999999999999999999
Q ss_pred HHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHH
Q 010786 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKI 148 (501)
Q Consensus 104 iR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~L 148 (501)
+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||.|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=1.4e-34 Score=253.26 Aligned_cols=126 Identities=39% Similarity=0.708 Sum_probs=123.2
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi 104 (501)
+++|++|++|||+|+|||++++|.+|+++||++ ..|..||.+||+||.+.+ +||+|||||+||+|||+||+++|+.++
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999999999999999999999999 999999999999999987 999999999999999999999999999
Q ss_pred HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHH
Q 010786 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (501)
Q Consensus 105 R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER 152 (501)
+.|...|..|.+|+|+|++|.|+|.+||++|+.|.+||.|.++|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.92 E-value=4.8e-25 Score=196.63 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=107.8
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhh-hhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 30 QKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYV-YKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 30 ~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~I-YKALtLLEYLLkNGSErvVddiR~h 107 (501)
.+|++||+||+|||++.+|.|||+.||+. ..|.+||++|.+||++++ +|| +|||+||.||+.+|++.|+.|+|.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 57899999999999999999999999996 889999999999999876 999 9999999999999999999999999
Q ss_pred hhhhhcccceEE-eCC-CCcchhhHHHHHHHHHHHHhcCh
Q 010786 108 TFQISSLSSFEY-VEP-SGKDMGINVRKKAENIVALLNNK 145 (501)
Q Consensus 108 i~~Ir~L~~FqY-vD~-~GkD~GinVReKAk~IleLL~D~ 145 (501)
.++|+.|++|++ .|+ .|.+.|..||.+|+++++||-..
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 999999999999 688 99999999999999999999654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.89 E-value=9.4e-23 Score=175.09 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=104.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 29 E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~h 107 (501)
|++|++||+++.|||+..+|.+|++.+++. ..+.+||+.||+||.+. +||++||||+|||||++||.++|..+++.+
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 789999999999999999999999999887 56789999999999876 999999999999999999999999999999
Q ss_pred hhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcC
Q 010786 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (501)
Q Consensus 108 i~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D 144 (501)
.++++.+ .|+|.+..|.+++.+||+|+++|+++..|
T Consensus 80 ~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 80 DFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 9888765 46888889999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.79 E-value=5.4e-19 Score=153.76 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=103.9
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 28 ~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
+|+.|+.||+++.|+|..+.|.+|..+|++ ...+..||..|++||.+ ++|+++||||+||++||++|++.++.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 378899999999999999999999999999 89999999999999998 799999999999999999999999999999
Q ss_pred hhhhhhcccceEEeCC-CCcchhhHHHHHHHHHHHHh
Q 010786 107 HTFQISSLSSFEYVEP-SGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 107 hi~~Ir~L~~FqYvD~-~GkD~GinVReKAk~IleLL 142 (501)
|...| .|..|.+.+. .|.|+|..||..|+-|.+.|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 97777 6778988865 68999999999999988765
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.76 E-value=2.7e-08 Score=96.90 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=83.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR 105 (501)
+++|+-|..||+.+.-+|..+.+..|..+|++......++..|.+||... ++|.+++|+|.||+.||+.|++.++.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 57889999999999999999999999999999667788999999999774 58999999999999999999999999998
Q ss_pred hhhhhhhcccceEEeC---CCCcchhhHHHHHHHHHH
Q 010786 106 EHTFQISSLSSFEYVE---PSGKDMGINVRKKAENIV 139 (501)
Q Consensus 106 ~hi~~Ir~L~~FqYvD---~~GkD~GinVReKAk~Il 139 (501)
.|...+..+.++.-.| ..+.++|.-||.=|+-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~ 117 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLD 117 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHHH
Confidence 8776666666553322 345678888888876554
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.5e-06 Score=93.59 Aligned_cols=117 Identities=26% Similarity=0.348 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 010786 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (501)
Q Consensus 24 nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVd 102 (501)
.++.+++.|..||+.|..+|..+.+..|-.+|-.. ....-++..|-+||... ++|-.+||||+||++||++|.+.+..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 57999999999999999999999999999999665 67778999999999987 59999999999999999999999999
Q ss_pred HHHhhhhhhhcccceEEe-CCCCcchhhHHHHHHHHHHHHh
Q 010786 103 DIIEHTFQISSLSSFEYV-EPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 103 diR~hi~~Ir~L~~FqYv-D~~GkD~GinVReKAk~IleLL 142 (501)
++..+-..| .|.+|.=. ...+-|+..-||.=|.-|=+.|
T Consensus 99 ~l~~~~~~l-~lS~F~d~s~~~~~d~safVR~Ya~YLderl 138 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDFRDKSSSLTWDMSAFVRTYALYLDERL 138 (491)
T ss_pred HHHhccccc-chhhhhcccccccchhhHHHHHHHHHHHHHH
Confidence 887666333 34566211 2236688889997665554433
No 11
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.06 E-value=1.4e-05 Score=72.04 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
.++++.+|.+||+...-.|.-..+.+|++.-.. .....+++..|.|||.. .+-+.++-||+|||+|++||..+|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999988888887888888887533 56678899999999999 588999999999999999999998877
Q ss_pred HHhh--hhhhhcccceEEeCCCCcchhhH--HHHHHHHHHHHh
Q 010786 104 IIEH--TFQISSLSSFEYVEPSGKDMGIN--VRKKAENIVALL 142 (501)
Q Consensus 104 iR~h--i~~Ir~L~~FqYvD~~GkD~Gin--VReKAk~IleLL 142 (501)
+-.. +..|..|-.-.+ .+.. ||+|+.+++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~~-------~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKK-------TDPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTT-------THHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCC-------CCchhHHHHHHHHHHHHH
Confidence 6332 333333222111 2223 999998887654
No 12
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.61 E-value=0.0005 Score=61.89 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=76.0
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 29 E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~h 107 (501)
|.+|.+||+...-.|.-..+-+|++.-.. ...-.+.+..|.|||.. ++-+.++.||.|||+|++|+..+|..++-+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 67899999987777777888888877533 34467899999999996 4788899999999999999988887776443
Q ss_pred hhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHh
Q 010786 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 108 i~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL 142 (501)
-. +..|... +... .....||+|+.+++.-.
T Consensus 80 ~f-l~~L~~l--~~~~--~~~~~Vk~kil~li~~W 109 (133)
T smart00288 80 EF-LNELVKL--IKPK--YPLPLVKKRILELIQEW 109 (133)
T ss_pred HH-HHHHHHH--HcCC--CCcHHHHHHHHHHHHHH
Confidence 22 2222211 1111 11112999988887654
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.61 E-value=0.00042 Score=63.78 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 29 E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~h 107 (501)
|.+|.+||+...-.|.-.++-+|+..--. ...-.+.|..|.|||.. ++-+.++.||.|||-|++|+-.+|-.++-..
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 68899999987667777788888877533 45566799999999986 4778899999999999999999988877432
Q ss_pred hhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 108 i~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
..+..|... +... .-..||+|+.+|+.-..
T Consensus 80 -~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 -DFTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 222223222 1211 34589999988887653
No 14
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.53 E-value=0.0011 Score=60.82 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=79.7
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
.++++.+|.+||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. ++-+.++-||.|||.|++|+-.+|-.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 367899999999976667777777777776533 34457799999999988 578999999999999999998887777
Q ss_pred HHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 104 iR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
+-+.- .+..|... +.. ..-..||+|+-+|+.-..
T Consensus 80 vas~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASRE-FMDELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHH-HHHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 64321 12222211 111 233589999888876543
No 15
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.47 E-value=0.0012 Score=59.27 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 29 E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~h 107 (501)
+.+|.+||+...-.|.-.++.+|+..-.. ...-.+.+..|.|||... +-+..+-||.|||.|++||..+|-.++-..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 46789999986666777777888777543 345678999999999975 778999999999999999999888777664
Q ss_pred hhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 108 i~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
-++.+ |... +... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHHH
Confidence 33332 2222 1111 1244589999988887553
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.32 E-value=0.0034 Score=57.52 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 28 ~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
.+.+|.+||+..--.|.-.+.-+|++.-... ..-.+.|..|.|||. .+++-+.++-||+|||-|++|+-.+|-.++-.
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias 80 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK 80 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 5789999999766666666777777665333 345779999999996 45688899999999999999999998877633
Q ss_pred hhhhhhc-ccceEEeCCCCcchhhHHHHHHHHHHHHhc----ChHHHHHHHHHHHHhh
Q 010786 107 HTFQISS-LSSFEYVEPSGKDMGINVRKKAENIVALLN----NKDKIQEVRNKASANR 159 (501)
Q Consensus 107 hi~~Ir~-L~~FqYvD~~GkD~GinVReKAk~IleLL~----D~e~LreER~KAkk~R 159 (501)
. ..+.. |... +.+++ +.-..|++|+.+|+.-.. ++..|..-+.--.+++
T Consensus 81 k-~Fl~e~L~~~--i~~~~-~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 134 (141)
T cd03565 81 K-DFIKDVLVKL--INPKN-NPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELK 134 (141)
T ss_pred H-HhhhHHHHHH--HcccC-CCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence 2 11111 2111 11111 123468888887776543 3333444444434443
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.30 E-value=0.0032 Score=57.86 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 28 ~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
+|.+|..||+.-.-.|.-..+.+|+..-.. ...-.+.+..|.|||... +-+.++-||.|||.|++|+-.+|-.++-.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas 79 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGK 79 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 688999999976666777777777776533 334567999999999855 57789999999999999999988777643
Q ss_pred h--hh-hhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 107 H--TF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 107 h--i~-~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
. +. +++.+.. +| .|...-..||+|+.+|+.-..
T Consensus 80 ~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 80 FRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 2 32 2332221 22 133344699999988887665
No 18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0098 Score=64.51 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 28 ~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
+..+|..||+..--+|.=.+--|||+.--. .....+++..|.|||..+.. +..|=||+|||=|++|+-+.|=.++-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 457899999987667777777788877633 34456899999999998754 778889999999999998876655533
Q ss_pred hhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHh
Q 010786 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 107 hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL 142 (501)
--.+=+.++.|++.. .-..||+|+-.||+.=
T Consensus 80 k~fL~emVk~~k~~~-----~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKP-----RDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccccCC-----cchhHHHHHHHHHHHH
Confidence 333333556665532 4568999998888753
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=94.11 E-value=0.52 Score=50.86 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCHHHHHHHHhhc----CCCCCCCHHHHHHHHHH-ccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 010786 25 VPEIEQKVLDATD----NEPWGPHGTALAEIAQA-TKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (501)
Q Consensus 25 ySe~E~KVREATN----NDpWGPt~slM~EIAqa-Tyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSEr 99 (501)
.+++|..|..||+ .|.|+ ++-+||.. +-+.+--...|+.|.|||+.. .-..|+-||+||+-|+.|+-.+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred cchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcchH
Confidence 5789999999998 37785 45555554 344455667999999999986 4568999999999999999999
Q ss_pred HHHHH--HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhc
Q 010786 100 AVDDI--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANRE 160 (501)
Q Consensus 100 vVddi--R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~ 160 (501)
+..++ |+-+..++.|-.=.- - --.-..||.-.++..+-..++..|.-.-.-.+++|.
T Consensus 80 ~r~EVsSr~F~~el~al~~~~~-h---~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELRALIESKA-H---PKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred HHHHHhhhhHHHHHHHHHhhcc-c---HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 99887 444545554422111 0 112233444444444555555555555555555554
No 20
>PLN03131 hypothetical protein; Provisional
Probab=89.48 E-value=6.3 Score=44.95 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=31.1
Q ss_pred ccccccccCCCCCccCCCCCcccccCCCCCCCCCCC-CCCCCCCCCCCCCCCccc
Q 010786 358 KTEVDLFSSQPVDFSAAPAPVDLFAAPEPAVHPEPK-APKSEPTTTNIVDPFATV 411 (501)
Q Consensus 358 ~~~vdlf~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dpfa~v 411 (501)
..-|||| ..-+++-++.+|+|..++-...|..+ .+.+....|..+|=||++
T Consensus 359 a~pIDLF---qlp~ts~a~~vdlf~~s~l~~~p~~n~~q~~qts~p~~~dlfag~ 410 (705)
T PLN03131 359 APPIDLF---QLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSIDLFGGI 410 (705)
T ss_pred CCchhhh---hccCCCCCCcccccccCcccCCCccccCCCCcccCCccccccccc
Confidence 5678999 33345555578888754422223332 335666778888888765
No 21
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.40 E-value=2.4 Score=49.65 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=81.2
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh
Q 010786 30 QKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF 109 (501)
Q Consensus 30 ~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~ 109 (501)
.-|+.|++.+...|-.++..-|.-.|++...-.... +..+|+.- ..+-...+|.+.||.-||+-|.+.++.+.+.|..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~FW-t~ik~~PL-~~~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIFW-TTIKRQPL-ENHEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccchhHH-HHhhcccc-ccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 468899999999999999999999998864432222 22233322 1345677899999999999999999999999999
Q ss_pred hhhcccceEEeCCCCcchhhHHHHHHHHHHH
Q 010786 110 QISSLSSFEYVEPSGKDMGINVRKKAENIVA 140 (501)
Q Consensus 110 ~Ir~L~~FqYvD~~GkD~GinVReKAk~Ile 140 (501)
.|+.|..+.-.- . .++|.-||.-++-|..
T Consensus 87 ~i~~l~r~w~~l-s-~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 87 WITQLGRMWGHL-S-DGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHhccc-c-ccchHHHHHHHHHHHH
Confidence 999997763211 1 5788889888776554
No 22
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=81.16 E-value=8.5 Score=33.24 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 27 e~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
+.+..+++-|.+...++.-..|..+|.. +......|+.+|.++|..... ++-+-.|-|++-+++|.-.+....+..
T Consensus 3 ~~~~~l~~L~~~~~S~~~I~~lt~~a~~--~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 3 DYNALLEKLTFNKNSQPSIQTLTKLAIE--NRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred cHHHHHHHHHcCcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHH
Confidence 3455666667766555555555555544 346778899999999987643 777789999999999977776666555
Q ss_pred hhh-hhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcC
Q 010786 107 HTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (501)
Q Consensus 107 hi~-~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D 144 (501)
.+. ++. .-|+- ....+|+|..+|+++-++
T Consensus 79 ~~~~~f~--~~~~~-------~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 79 FLVPLFL--DAYEK-------VDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHH--HHHHh-------CCHHHHHHHHHHHHHccC
Confidence 432 221 22221 234788999888887544
No 23
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=6.4 Score=43.45 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhcC----CCCCCCHHHHHHHHHHccCchhHHHH-HHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhH
Q 010786 26 PEIEQKVLDATDN----EPWGPHGTALAEIAQATKKFSECQMV-MNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERA 100 (501)
Q Consensus 26 Se~E~KVREATNN----DpWGPt~slM~EIAqaTyn~~~y~~I-M~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErv 100 (501)
-.+|..|-.||+- +.| +.++-+++.-|...+-.-+ ...|-..| ....+|--+| ||++|||+++||-|+|
T Consensus 7 ~sle~wlnrATdp~~~eedw----~ai~~fceqinkdp~gp~lAv~LlaHKi-qSPqe~EAl~-altvLe~cmkncGekf 80 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDW----KAIDGFCEQINKDPEGPLLAVRLLAHKI-QSPQEWEALQ-ALTVLEYCMKNCGEKF 80 (594)
T ss_pred ccHHHHHHhccCccchHHHH----HHHHHHHHHHhcCCCCchhHHHHHHhhc-CChhHHHHHH-HHHHHHHHHHhhhHHH
Confidence 3567777778762 233 2333344333322221112 22222222 2356887765 8999999999999998
Q ss_pred HHHHHhh
Q 010786 101 VDDIIEH 107 (501)
Q Consensus 101 VddiR~h 107 (501)
=+++-..
T Consensus 81 H~evgkf 87 (594)
T KOG1086|consen 81 HEEVGKF 87 (594)
T ss_pred HHHHHHH
Confidence 8776444
No 24
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=72.90 E-value=13 Score=32.18 Aligned_cols=95 Identities=5% Similarity=0.088 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh-hhhcccceEEe
Q 010786 43 PHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF-QISSLSSFEYV 120 (501)
Q Consensus 43 Pt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~-~Ir~L~~FqYv 120 (501)
++...+..++...- +.+....|+++|.+++.....+ +-+-.|-|++-+++|+.......++..+. .|.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666666666653 4456678999999999875443 44568999999999987664444433222 1111 12111
Q ss_pred CCCCcchhhHHHHHHHHHHHHhcC
Q 010786 121 EPSGKDMGINVRKKAENIVALLNN 144 (501)
Q Consensus 121 D~~GkD~GinVReKAk~IleLL~D 144 (501)
..... ..+|+|..+|+++=++
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 4789999999998765
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.99 E-value=24 Score=41.62 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=74.7
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHHHHhhcCC--CchhhhhhHHHHH--HHHHHcCCHhHHHHHHhhhhhhhcc--cceE
Q 010786 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETG--KDWRYVYKALAVI--EYLISHGSERAVDDIIEHTFQISSL--SSFE 118 (501)
Q Consensus 45 ~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~g--K~WR~IYKALtLL--EYLLkNGSErvVddiR~hi~~Ir~L--~~Fq 118 (501)
-+++..+-.-+.++++..++..+||.-+.+.+ -++..|+.-|+|+ +|-++--.-.+|++|...|.+=+.- -+|.
T Consensus 368 ~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~ 447 (1102)
T KOG1924|consen 368 EELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFK 447 (1102)
T ss_pred HHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 34555566678889999999999999998864 4567777666665 3444444444555555554443332 3455
Q ss_pred EeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccc
Q 010786 119 YVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYF 163 (501)
Q Consensus 119 YvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~ 163 (501)
|.--=..| ..+|++-+.|.+++++-|++|.++..||-
T Consensus 448 yr~~l~id--------~~~liD~~vdkak~eeseqkA~e~~kk~~ 484 (1102)
T KOG1924|consen 448 YRFRLDID--------LTELIDKMVDKAKAEESEQKAAELEKKFD 484 (1102)
T ss_pred hhhcccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211112 46788899999999999999999988864
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=60.63 E-value=35 Score=29.74 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHH
Q 010786 59 SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENI 138 (501)
Q Consensus 59 ~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~I 138 (501)
+.+..|++.|.+.|.+. +||.=|=|..-|-.|++..-+.++..+-+-...|-.| . .|.-.+||.-|+.|
T Consensus 23 ~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-----~----~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-----S----ADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----cCCchhHHHHHHHH
Confidence 45667888888888876 8999999999999999998877766444333333221 1 13455899999999
Q ss_pred HHHhcC
Q 010786 139 VALLNN 144 (501)
Q Consensus 139 leLL~D 144 (501)
-.||.|
T Consensus 92 d~llkd 97 (97)
T PF12755_consen 92 DRLLKD 97 (97)
T ss_pred HHHhcC
Confidence 999986
No 27
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.33 E-value=4.6 Score=46.88 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=35.7
Q ss_pred CHHHHHHH--HhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCc
Q 010786 26 PEIEQKVL--DATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKD 78 (501)
Q Consensus 26 Se~E~KVR--EATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~ 78 (501)
.+.|+.|. |+|+.+-|||+ -|..|+...-..+|..|..|+.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH
Confidence 45566664 89999999999 677788777778999888888776644
No 28
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.16 E-value=88 Score=38.77 Aligned_cols=144 Identities=13% Similarity=0.011 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHH-HhhcCCCHHHH---HHHHhhcCCCCCCCHHHHHHHHHHccCc--hhHHHHHHHHHHHhhcCC-----
Q 010786 8 DQTVREIKREVN-LKVLKVPEIEQ---KVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETG----- 76 (501)
Q Consensus 8 ~qtvReikRkVk-n~V~nySe~E~---KVREATNNDpWGPt~slM~EIAqaTyn~--~~y~~IM~vLwKRL~d~g----- 76 (501)
.+-+|+-|-.|+ .+++..+++=. ..+.|-+.+-|++...+-.+|-+..|.- ++...|-.+|..-|..+.
T Consensus 382 ~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~ 461 (1266)
T KOG1525|consen 382 AERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQE 461 (1266)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHH
Confidence 333444444443 23444444433 4567777888888887788888887765 334444455555565432
Q ss_pred --CchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHH
Q 010786 77 --KDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNK 154 (501)
Q Consensus 77 --K~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~K 154 (501)
+.|.++|..|-++.+=.-+-=-.+...+|+++...=.+..++|.|. .-..|..+...|.+.|-|+-....-+.+
T Consensus 462 Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~ 537 (1266)
T KOG1525|consen 462 RMKHLYQLLAGLDLNAHKAFNEILKRQSRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMK 537 (1266)
T ss_pred HHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHH
Confidence 4555555544444333222222233334444443225566666653 4446777777888888887655555544
Q ss_pred H
Q 010786 155 A 155 (501)
Q Consensus 155 A 155 (501)
.
T Consensus 538 f 538 (1266)
T KOG1525|consen 538 F 538 (1266)
T ss_pred H
Confidence 4
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=38.03 E-value=3.1e+02 Score=30.40 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHccCchhHHHHHHHHHHHhhcC--C-------CchhhhhhHHHHHHHHHHcCC
Q 010786 44 HGTALAEIAQATKKFSECQMVMNVLWTRLAET--G-------KDWRYVYKALAVIEYLISHGS 97 (501)
Q Consensus 44 t~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~--g-------K~WR~IYKALtLLEYLLkNGS 97 (501)
++..|.+|+++-|..-+...-++.|..+|.-. . |.-|.|-|.|.-.+-++.++.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~ 284 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH 284 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46778899999999988888899999988643 2 445556666666666666664
No 30
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=1.1e+02 Score=35.43 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=79.0
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi 104 (501)
|..+.++..||+-+..-+.-...-||...... ......-|..|.+|++ ..+-+...=+|.|+++.++||--.|..++
T Consensus 7 ~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 7 SAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred hHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 45667788888877655555556666655433 2344556777888887 45667777799999999999887777775
Q ss_pred --HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHH----HhcChHHHHHHHHHHHHhhccccc
Q 010786 105 --IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVA----LLNNKDKIQEVRNKASANREKYFG 164 (501)
Q Consensus 105 --R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~Ile----LL~D~e~LreER~KAkk~R~Ky~G 164 (501)
|+.+..|..+-.=+-+++ +||+|...|+. -+.++ .+++....+..++.+
T Consensus 85 ~tre~m~~~~~~l~~~~~~e-------~v~~~~l~~~q~wa~af~~~----~~~~~v~~t~~~lk~ 139 (634)
T KOG1818|consen 85 ATREFMDLLKSLLESQRIHE-------EVKNKILELIQNWAAAFRNS----SKYSYVLDTYQKLKG 139 (634)
T ss_pred HHHHHHHHHHhhhccccccc-------hHHHHHHHHHHHHHHHccCc----hHHHHHHHHHHHHhc
Confidence 777777766433221332 55555555443 33444 355555555555443
No 31
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=35.77 E-value=53 Score=28.83 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHccCchhHHHHHHHHHHHhhc-------------CCCchhhhhhHHH
Q 010786 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE-------------TGKDWRYVYKALA 87 (501)
Q Consensus 43 Pt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d-------------~gK~WR~IYKALt 87 (501)
++..+|..|-..+ .++....+.||++|.. .+..||.+|-.|.
T Consensus 19 ~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 19 CSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLK 73 (109)
T ss_pred CCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHH
Confidence 4677777777766 5566677889998853 1358999987543
No 32
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=35.08 E-value=49 Score=22.72 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCHhHHHHHHh
Q 010786 87 AVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 87 tLLEYLLkNGSErvVddiR~ 106 (501)
.|++||+++|-......++.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58899999999887766543
No 33
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.71 E-value=1.2e+02 Score=35.29 Aligned_cols=90 Identities=24% Similarity=0.265 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHccCchhHHHHHHHHHHHhhcC--CCchhhhhhHH-HHHHHHHHcCCH--hHHHHHHhhhhhhhcccceE
Q 010786 44 HGTALAEIAQATKKFSECQMVMNVLWTRLAET--GKDWRYVYKAL-AVIEYLISHGSE--RAVDDIIEHTFQISSLSSFE 118 (501)
Q Consensus 44 t~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~--gK~WR~IYKAL-tLLEYLLkNGSE--rvVddiR~hi~~Ir~L~~Fq 118 (501)
+.+.++++-..-+...--..+..++-+-|.-+ +..--+|+|-| +.++|++.+-+| ++|+-+-.|+ |+-
T Consensus 27 hrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~--lRg----- 99 (885)
T COG5218 27 HRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHL--LRG----- 99 (885)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHH--Hhc-----
Confidence 56666666655544333334555555555432 44555666655 578999999887 5777665553 322
Q ss_pred EeCCCCcchhhHHHHHHHHHHHHhcCh
Q 010786 119 YVEPSGKDMGINVRKKAENIVALLNNK 145 (501)
Q Consensus 119 YvD~~GkD~GinVReKAk~IleLL~D~ 145 (501)
++.+. .+||.++-+|+++|.|-
T Consensus 100 -~eskd----k~VR~r~lqila~~~d~ 121 (885)
T COG5218 100 -TESKD----KKVRKRSLQILALLSDV 121 (885)
T ss_pred -ccCcc----hhHHHHHHHHHHHHHHh
Confidence 23322 38999999999999873
No 34
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=34.00 E-value=45 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCHhHHHHHHhh
Q 010786 87 AVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 87 tLLEYLLkNGSErvVddiR~h 107 (501)
.|++||+.+|-......++.-
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e 29 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKE 29 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 499999999998877666543
No 35
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=31.91 E-value=2.1e+02 Score=30.75 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=64.0
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHH---HHHHHH--ccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcCCH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTAL---AEIAQA--TKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHGSE 98 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM---~EIAqa--Tyn~~~y~~IM~vLwKRL~d--~gK~WR~IYKALtLLEYLLkNGSE 98 (501)
+-++.-|+.-..-=|+.-+.+++ .||.+. .....++..|+..|++||.. ...+++..-.||.++. .+
T Consensus 251 ~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~------n~ 324 (409)
T PF01603_consen 251 SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN------NE 324 (409)
T ss_dssp GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG------SH
T ss_pred hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC------CH
Confidence 33344444444444444444432 233333 24568899999999999986 4678888888887753 34
Q ss_pred hHHHHHHhhhhhhhcccceEEeCCCC-cchhhHHHHHHHHHHHHhcCh
Q 010786 99 RAVDDIIEHTFQISSLSSFEYVEPSG-KDMGINVRKKAENIVALLNNK 145 (501)
Q Consensus 99 rvVddiR~hi~~Ir~L~~FqYvD~~G-kD~GinVReKAk~IleLL~D~ 145 (501)
.++..+.+|...|=.+ =|..+.... .-|-..||..|..++.+|.+-
T Consensus 325 ~~~~li~~~~~~i~p~-i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 325 YFLSLISQNSRVILPI-IFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHCTHHHHHHH-HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhChHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4444554443322111 010011111 237789999999999999764
No 36
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=31.75 E-value=1.6e+02 Score=35.67 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=52.9
Q ss_pred HHHHHHH--HHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHH-----------HHHHhhcC
Q 010786 9 QTVREIK--REVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNV-----------LWTRLAET 75 (501)
Q Consensus 9 qtvReik--RkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~v-----------LwKRL~d~ 75 (501)
.+.|-|+ .++.+.+.+.+|.|+....--.+ -=+|+-++..++...-|..++-++|++. +.|||..+
T Consensus 569 a~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~g-lg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~K 647 (1163)
T COG5602 569 ATQRTIKALEQIIDKIKDMEESEKANKTLPGG-LGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMK 647 (1163)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHhcCCCc-CCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHh
Confidence 3444444 56667777778777654432111 1267888999999999999988887764 55788888
Q ss_pred CCchhhhhhHH
Q 010786 76 GKDWRYVYKAL 86 (501)
Q Consensus 76 gK~WR~IYKAL 86 (501)
.++||.+...+
T Consensus 648 d~EWR~~kRew 658 (1163)
T COG5602 648 DEEWRSCKREW 658 (1163)
T ss_pred hHHHHHHHHHH
Confidence 88888765544
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=3.4e+02 Score=29.27 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc----hhHHHH--HHHHHHHhhcCCCchhhhhhHHHHHHH
Q 010786 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF----SECQMV--MNVLWTRLAETGKDWRYVYKALAVIEY 91 (501)
Q Consensus 18 Vkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~----~~y~~I--M~vLwKRL~d~gK~WR~IYKALtLLEY 91 (501)
+|+.|+.+.-.+.+++-.+.+++-....+.|..|+-+-.+. ..|..| ..+|..-|..++..-|-.-|++.||.|
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34566777777777777888888898899999988776553 233332 456777788888899999999999999
Q ss_pred HHHcCC
Q 010786 92 LISHGS 97 (501)
Q Consensus 92 LLkNGS 97 (501)
|+.---
T Consensus 238 Ll~~~~ 243 (342)
T KOG2160|consen 238 LLQEDK 243 (342)
T ss_pred HHHhhh
Confidence 997543
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=30.19 E-value=1e+02 Score=26.83 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=44.6
Q ss_pred hhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC--chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHH
Q 010786 21 KVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLIS 94 (501)
Q Consensus 21 ~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn--~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLk 94 (501)
++..++.-+.+||.+. -+.|.+|++.... ...|.+|+..|+|.+.+...+ |-++-.+|+.|||
T Consensus 32 VL~~~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 32 VLKCFDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HHHHcCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 4555666777777553 3456666655533 346899999999999997655 5667789999887
No 39
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=29.49 E-value=65 Score=34.43 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=33.7
Q ss_pred cchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccccc
Q 010786 125 KDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (501)
Q Consensus 125 kD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~Gv 165 (501)
.|+-...+.|++.+++||++.+.|...+.+++..-.+-.|-
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G~ 178 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIGR 178 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677889999999999999999998888888766655553
No 40
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.61 E-value=70 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHh-hccc
Q 010786 130 NVRKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (501)
Q Consensus 130 nVReKAk~IleLL~D~e~LreER~KAkk~-R~Ky 162 (501)
++.+-++.|.+||+|++.+++.++++++. ..+|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 56778999999999999998888888876 5543
No 41
>COG4907 Predicted membrane protein [Function unknown]
Probab=28.29 E-value=72 Score=35.86 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHhcChHHHHH
Q 010786 128 GINVRKKAENIVALLNNKDKIQE 150 (501)
Q Consensus 128 GinVReKAk~IleLL~D~e~Lre 150 (501)
.+.|-+|.-+-..++.|.|.|+.
T Consensus 521 ALGV~dkVvkam~~~~~~e~ikd 543 (595)
T COG4907 521 ALGVSDKVVKAMRKALDMEIIKD 543 (595)
T ss_pred hhccHHHHHHHHHHhCcHhHhcc
Confidence 35777888888888889998887
No 42
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=28.02 E-value=65 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhhccc
Q 010786 133 KKAENIVALLNNKDKIQEVRNKASANREKY 162 (501)
Q Consensus 133 eKAk~IleLL~D~e~LreER~KAkk~R~Ky 162 (501)
+-++.|.+||+|++.+++.++++++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 678899999999999888888777765543
No 43
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.81 E-value=1.7e+02 Score=24.70 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcC
Q 010786 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHG 96 (501)
Q Consensus 61 y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNG 96 (501)
+.+++.++.....+..+.+|..| ..||.+|+..|
T Consensus 34 ~~~vv~~~l~~~le~~~~~r~~~--~~Ll~~L~~~~ 67 (113)
T PF02847_consen 34 HHEVVKVILECALEEKKSYREYY--SKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHH--HHHHHHHHhcC
Confidence 33344444444333333333332 23444444443
No 44
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=27.66 E-value=4.9e+02 Score=26.60 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCCC-----CCCHHHHHHHHHHccCchhHHHH-HHHHHHHhhcCCCchhhhhhHH----HHHHHHHHcC
Q 010786 27 EIEQKVLDATDNEPW-----GPHGTALAEIAQATKKFSECQMV-MNVLWTRLAETGKDWRYVYKAL----AVIEYLISHG 96 (501)
Q Consensus 27 e~E~KVREATNNDpW-----GPt~slM~EIAqaTyn~~~y~~I-M~vLwKRL~d~gK~WR~IYKAL----tLLEYLLkNG 96 (501)
-.|.++.++..++.- .+...++..+...-.++.+|.+| ++++.| +. -+.|+.+++.| .|++-+|.+|
T Consensus 117 ~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C~RK-tE--~~~W~~LF~~lg~P~dLf~~cl~~~ 193 (258)
T PF07064_consen 117 ALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNCARK-TE--VRYWPYLFDYLGSPRDLFEECLENG 193 (258)
T ss_pred HHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHHHHh-hH--HHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 367888877776654 56778888888887666666554 444433 22 46899998876 5788888877
Q ss_pred CHh
Q 010786 97 SER 99 (501)
Q Consensus 97 SEr 99 (501)
.-+
T Consensus 194 ~l~ 196 (258)
T PF07064_consen 194 NLK 196 (258)
T ss_pred cHH
Confidence 655
No 45
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.74 E-value=4.4e+02 Score=28.99 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhc-----------CCCchhhhhhHHHHHHHHHHcCCH
Q 010786 61 CQMVMNVLWTRLAE-----------TGKDWRYVYKALAVIEYLISHGSE 98 (501)
Q Consensus 61 y~~IM~vLwKRL~d-----------~gK~WR~IYKALtLLEYLLkNGSE 98 (501)
+.++.+.+..||.. .-..|-+.+=.-.|.||+++||.-
T Consensus 84 e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~ 132 (389)
T KOG0396|consen 84 EEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYF 132 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCch
Confidence 44577777777631 125799999999999999999973
No 46
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=26.22 E-value=1e+02 Score=35.41 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=10.1
Q ss_pred HHHHHHcCCHhHHHH
Q 010786 89 IEYLISHGSERAVDD 103 (501)
Q Consensus 89 LEYLLkNGSErvVdd 103 (501)
|+.|...|.+++-.-
T Consensus 73 Ve~Mk~gGN~~AN~i 87 (648)
T PLN03119 73 VEVLQNGGNQRAREI 87 (648)
T ss_pred HHHHHHhchHHHHHH
Confidence 677777887765443
No 47
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=26.00 E-value=18 Score=27.36 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHhh
Q 010786 82 VYKALAVIEYLISHGSERAVDDIIEH 107 (501)
Q Consensus 82 IYKALtLLEYLLkNGSErvVddiR~h 107 (501)
+-|+|.||++|..++..--+.++-++
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~ 27 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARA 27 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 56899999999999987444554443
No 48
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=25.08 E-value=76 Score=35.24 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCC---Cchhhhhh-----HHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC
Q 010786 61 CQMVMNVLWTRLAETG---KDWRYVYK-----ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE 121 (501)
Q Consensus 61 y~~IM~vLwKRL~d~g---K~WR~IYK-----ALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD 121 (501)
-.|+.+.+.-.|.... +.||.+|+ ++.||.||+.+=.+.-.. ++. .+-++|+.|+...
T Consensus 166 ~~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~K-L~k--~l~~Tl~sfr~~N 231 (469)
T PF10151_consen 166 KKELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKK-LSK--SLKETLKSFRLKN 231 (469)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHH-HHH--HHHHHHHHHHHhH
Confidence 3567777777777653 78998887 588999999875433221 222 3445567776654
No 49
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=24.66 E-value=1.1e+02 Score=27.19 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCHHHHHH--HHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCH---
Q 010786 24 KVPEIEQKV--LDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE--- 98 (501)
Q Consensus 24 nySe~E~KV--REATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSE--- 98 (501)
.+++.++.. +.++ +|....-|..+......|..++..|.+|..+...--+..++.|.=|.= +.+++.
T Consensus 24 ~~~d~~K~~~L~~~L-------~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~-~~~~d~~~L 95 (145)
T PF03564_consen 24 DLSDIEKLNYLRSCL-------KGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLPP-ISNDDPEAL 95 (145)
T ss_pred CCCHHHHHHHHHHHh-------cchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhcccc-ccchhHHHH
Confidence 456666654 4554 445566677777788899999999999998764322332333322222 222222
Q ss_pred -hHHHHHHhhhhhhhcc
Q 010786 99 -RAVDDIIEHTFQISSL 114 (501)
Q Consensus 99 -rvVddiR~hi~~Ir~L 114 (501)
++++.++.++..|+.|
T Consensus 96 ~~~~~~v~~~i~~L~~l 112 (145)
T PF03564_consen 96 RSLVDKVNNCIRALKAL 112 (145)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 2455555555555544
No 50
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.33 E-value=2.4e+02 Score=24.22 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHcc--CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 010786 44 HGTALAEIAQATK--KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (501)
Q Consensus 44 t~slM~EIAqaTy--n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSEr 99 (501)
...+|..|++.-- ...-..+|++.+.+.|.+..+.+-..|=||.-|..| |+|-
T Consensus 26 AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 26 AASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 3567778876621 124566899999999999999999999999999999 6643
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=23.99 E-value=1.1e+02 Score=28.75 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q 010786 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN 158 (501)
Q Consensus 85 ALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~ 158 (501)
.+.|+|+|. .|.+=++.+.-....+|..-..--+++.. .+.+-++.|.+||+|++.+++.++.+++.
T Consensus 277 ~~~~~Ea~a-~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~------d~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 277 PLVIREALA-AGVPVIASDIGGMAELVRDGVNGLLFPPG------DAEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred ChHHHHHHH-CCCCEEECCCCCHHHHhcCCCcEEEECCC------CHHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 456788876 44444433322222233221111122221 36777999999999999988888877654
No 52
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=23.71 E-value=1e+02 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhhccc
Q 010786 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (501)
Q Consensus 130 nVReKAk~IleLL~D~e~LreER~KAkk~R~Ky 162 (501)
++.+-++.|.+||+|++++++.++++++...+|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999998888887666554
No 53
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=22.99 E-value=1.2e+02 Score=24.50 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHcCCHhHHHHHHhhhh--------hhhcccceEEeC
Q 010786 81 YVYKALAVIEYLISHGSERAVDDIIEHTF--------QISSLSSFEYVE 121 (501)
Q Consensus 81 ~IYKALtLLEYLLkNGSErvVddiR~hi~--------~Ir~L~~FqYvD 121 (501)
-+-|+|.||+||..++.+--+.++-+++. .|+.|.+-.|+.
T Consensus 3 ~~~r~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~ 51 (91)
T smart00346 3 SLERGLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVE 51 (91)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 35689999999998833334444433322 455565555553
No 54
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.72 E-value=77 Score=27.73 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 010786 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA 87 (501)
Q Consensus 45 ~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALt 87 (501)
+...++|+.+- .++|.+||+++- +..++-.-|+..|||+
T Consensus 33 gDDvqQL~~~~--e~eF~eim~lvG--M~sKPLHVrRlqKAL~ 71 (82)
T PF04904_consen 33 GDDVQQLCEAG--EEEFLEIMALVG--MASKPLHVRRLQKALQ 71 (82)
T ss_pred ChhHHHHHhcC--hHHHHHHHHHhC--ccCccHHHHHHHHHHH
Confidence 34456666654 389999999986 7778889999999875
No 55
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=1.2e+02 Score=34.88 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccce
Q 010786 38 NEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSF 117 (501)
Q Consensus 38 NDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~F 117 (501)
..+-+|=+.+-.+|...+++|.+..-+ .|=...+.+.|+|| ||.+|.|++++-. +++ +.+..++.. .+
T Consensus 211 ~K~s~pltalQ~~L~~~m~~YrDl~y~-----~~s~kn~~e~R~lY-clH~lNHi~K~r~-~IL---~Nn~r~~Sq--k~ 278 (698)
T KOG2340|consen 211 QKKSEPLTALQKELFKIMFNYRDLLYP-----TRSQKNGEEYRSLY-CLHALNHILKTRD-LIL---GNNRRLASQ--KE 278 (698)
T ss_pred ccccCcchHHHHHHHHHHHhhhhhccc-----cccccccchhhhhH-HHHHHHHHHHHHH-HHh---cchHhhhhh--hc
Confidence 457788888888899998887653322 11123577899999 9999999999753 111 111111111 11
Q ss_pred E-EeCCCCcchhh---------HHHHHHHHHHHHh
Q 010786 118 E-YVEPSGKDMGI---------NVRKKAENIVALL 142 (501)
Q Consensus 118 q-YvD~~GkD~Gi---------nVReKAk~IleLL 142 (501)
- -.++.=.|||. --|+-|-+|++||
T Consensus 279 g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~l 313 (698)
T KOG2340|consen 279 GENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLL 313 (698)
T ss_pred CCCCchhhhhcCCCCceEEEEecchHHHHHHHHHH
Confidence 1 11223356663 5699999999888
No 56
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.14 E-value=1.2e+02 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhh
Q 010786 130 NVRKKAENIVALLNNKDKIQEVRNKASANR 159 (501)
Q Consensus 130 nVReKAk~IleLL~D~e~LreER~KAkk~R 159 (501)
++.+-++.|.+|++|++.+++..+++++..
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 455678999999999999888888877754
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.43 E-value=1.4e+02 Score=28.62 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q 010786 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (501)
Q Consensus 130 nVReKAk~IleLL~D~e~LreER~KAkk~ 158 (501)
++.+-++.|..||+|++.+++.++++++.
T Consensus 318 d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 318 DPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 57778999999999999988888888765
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.14 E-value=4.4e+02 Score=30.24 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCC--CCCCC---CCcccCCcchhhhh
Q 010786 278 DDDFDDFDPRGTSSN--KSAAG---NSKQVDPFGDSLIG 311 (501)
Q Consensus 278 ~dd~ddf~prg~s~~--~~~~~---~~~~~dlfg~~l~~ 311 (501)
+.||.--||-|-++- ||++- .-..+|.||..-+|
T Consensus 796 ~~d~sy~dpl~~q~erpkt~akk~~~dtniddf~dee~~ 834 (840)
T KOG2003|consen 796 AEDASYDDPLAIQIERPKTAAKKRIDDTNIDDFADEEFD 834 (840)
T ss_pred hhccccCCcccccccCCcccccccccccCccccchhhcc
Confidence 444555566666553 33322 23445666654443
No 59
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.06 E-value=1.1e+02 Score=32.77 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHH--ccCchhHHH-HHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccce
Q 010786 47 ALAEIAQA--TKKFSECQM-VMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSF 117 (501)
Q Consensus 47 lM~EIAqa--Tyn~~~y~~-IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~F 117 (501)
...||.+. ..+..+|.+ +-+.|.++|.--..+..++..-=..|+++|.-|.|+....+..++..|+.+.-|
T Consensus 271 s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf 344 (347)
T KOG2713|consen 271 SIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKARELAAKNLEEIKQLMGF 344 (347)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 34455543 344455554 667777777654434444333456799999999999999999999999887766
No 60
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.04 E-value=6.6e+02 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHcCCH--hHHHHHHhhhhhhhccc
Q 010786 82 VYKALAVIEYLISHGSE--RAVDDIIEHTFQISSLS 115 (501)
Q Consensus 82 IYKALtLLEYLLkNGSE--rvVddiR~hi~~Ir~L~ 115 (501)
+.++|.+|+.|+.+|-+ +++.++.+|+..|-.|+
T Consensus 263 ~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vk 298 (824)
T PRK07764 263 GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQ 298 (824)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44677889999998854 57777766655443333
No 61
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.03 E-value=5e+02 Score=21.78 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=58.2
Q ss_pred cCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 010786 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (501)
Q Consensus 23 ~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVd 102 (501)
-++.+.....+.+...+|+ .......+++.-+...+|.....++.+.+...+..|...|. |-.+ |+...--++.+.
T Consensus 31 ~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~-~~~~g~~~~A~~ 106 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAEC-LLALGEPESALK 106 (135)
T ss_pred ccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHH-HHHcCCHHHHHH
Confidence 3556666677777776666 34555566666666677777777666666555555555443 2222 222233344555
Q ss_pred HHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHh
Q 010786 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 103 diR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL 142 (501)
+++.-+.+. ++ .......+.++..++++|
T Consensus 107 ~~~~al~~~----------p~-~~~~~~~~~~~~~~~~~~ 135 (135)
T TIGR02552 107 ALDLAIEIC----------GE-NPEYSELKERAEAMLESL 135 (135)
T ss_pred HHHHHHHhc----------cc-cchHHHHHHHHHHHHhcC
Confidence 554333322 11 123345677777777765
No 62
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=20.73 E-value=1.4e+02 Score=30.42 Aligned_cols=52 Identities=17% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCCCCH----HHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhH
Q 010786 30 QKVLDATDNEPWGPHG----TALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKA 85 (501)
Q Consensus 30 ~KVREATNNDpWGPt~----slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKA 85 (501)
+-+..|.+|..|-|=+ .+|--+-.....-.-...=...||++|+ +||.|||.
T Consensus 77 ~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----~Wr~vF~~ 132 (221)
T KOG0037|consen 77 KELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----QWRNVFRT 132 (221)
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHHHHh
Confidence 4456788877775522 2222222221111222233456788775 68888874
No 63
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=20.71 E-value=4.4e+02 Score=27.73 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHc--cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC
Q 010786 44 HGTALAEIAQAT--KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE 121 (501)
Q Consensus 44 t~slM~EIAqaT--yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD 121 (501)
++.|...|.+.+ .=++-+..|+++.-+|-..+.-.++. +|.=|.|++- +.+...+. +..+..--.|.+.+
T Consensus 77 ~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv---~la~l~~~l~----r~~~~~~~-l~~~~~~i~~~g~g 148 (351)
T TIGR03156 77 SPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQV---ELAQLKYLLP----RLVGGWTH-LSRQGGGIGTRGPG 148 (351)
T ss_pred CHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHH---HHHhccchhh----hhhhhHHH-HHhhcCCCCCCCCC
Confidence 566666666664 22355667888888887765444443 5666666664 44444443 44444444554333
Q ss_pred CCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcc
Q 010786 122 PSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREK 161 (501)
Q Consensus 122 ~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~K 161 (501)
+. +.....|.-.++|..|...=+.|++.|+..+..|.+
T Consensus 149 E~--~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~ 186 (351)
T TIGR03156 149 ET--QLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKR 186 (351)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 21 234444555555666666668888888888887733
Done!