Query 010786
Match_columns 501
No_of_seqs 173 out of 421
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 2.2E-59 7.4E-64 436.5 15.8 159 9-167 16-175 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 1.2E-57 4.1E-62 415.4 16.5 148 18-165 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 1.1E-54 3.9E-59 392.9 15.9 143 23-165 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 1.7E-54 5.7E-59 393.6 1.2 143 10-152 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 1.5E-34 5E-39 261.2 11.5 117 29-147 13-133 (140)
6 3zym_A Phosphatidylinositol-bi 99.6 8.6E-16 2.9E-20 153.1 11.2 127 8-138 10-138 (310)
7 3zyl_A Phosphatidylinositol-bi 99.6 1.1E-15 3.6E-20 150.1 10.9 127 8-138 10-138 (271)
8 1hx8_A Synapse-enriched clathr 99.2 3.9E-11 1.3E-15 118.6 10.8 129 9-141 6-147 (299)
9 1x5b_A Signal transducing adap 97.8 9.5E-05 3.2E-09 67.6 9.9 127 25-161 13-146 (163)
10 3rru_A TOM1L1 protein; structu 97.8 0.0002 7E-09 65.1 11.9 111 26-143 15-129 (152)
11 3zyq_A Hepatocyte growth facto 97.8 0.00017 5.9E-09 68.7 11.7 128 24-161 5-139 (226)
12 1juq_A ADP-ribosylation factor 97.8 0.00016 5.6E-09 66.6 10.9 114 25-143 11-127 (171)
13 1elk_A Target of MYB1; superhe 97.7 0.00034 1.2E-08 63.4 12.5 111 26-144 15-130 (157)
14 3ldz_A STAM-1, signal transduc 97.7 0.00024 8.2E-09 63.3 11.1 107 25-142 3-112 (140)
15 1mhq_A ADP-ribosylation factor 97.5 0.00092 3.2E-08 60.3 12.4 111 28-143 2-115 (148)
16 3g2s_A C-terminal fragment of 97.5 0.00068 2.3E-08 61.4 11.2 113 24-142 8-124 (149)
17 1dvp_A HRS, hepatocyte growth 97.5 0.00054 1.9E-08 64.5 10.7 108 26-143 4-114 (220)
18 1sz9_A PCF11 protein; RNA poly 82.4 6 0.0002 35.2 8.8 105 41-157 23-137 (144)
19 2ijq_A Hypothetical protein; s 79.0 2.6 9E-05 38.8 5.5 85 56-149 46-135 (161)
20 4flb_A Regulation of nuclear P 70.4 38 0.0013 28.8 10.3 97 44-154 20-127 (132)
21 3d9j_A RNA-binding protein 16; 64.9 64 0.0022 28.5 10.9 117 27-156 6-136 (145)
22 3fga_B Serine/threonine-protei 47.6 32 0.0011 35.8 6.8 112 25-144 246-366 (403)
23 2pk2_A Cyclin-T1, protein TAT; 38.7 17 0.00058 36.6 3.0 25 129-153 232-257 (358)
24 2qk2_A LP04448P; mini spindles 36.9 68 0.0023 28.7 6.5 65 34-100 22-92 (242)
25 3ut4_A CTHE_2751, putative unc 36.6 2.1E+02 0.0073 25.6 9.5 91 33-141 37-127 (134)
26 2db0_A 253AA long hypothetical 36.1 39 0.0013 33.0 4.9 61 25-97 3-64 (253)
27 1deq_A Fibrinogen (alpha chain 33.2 1.6E+02 0.0055 30.8 9.1 73 38-112 41-126 (390)
28 2b4j_C PC4 and SFRS1 interacti 30.4 44 0.0015 28.7 3.8 66 61-140 8-77 (98)
29 2npp_B PP2A, B subunit, serine 28.9 1.6E+02 0.0053 31.1 8.4 113 25-145 279-400 (449)
30 2km4_A Regulator of TY1 transp 27.3 1.8E+02 0.0063 25.3 7.4 103 44-155 18-131 (142)
31 2cwy_A Hypothetical protein TT 26.7 1.8E+02 0.0062 24.0 6.9 76 56-143 15-93 (94)
32 2klq_A CBD, P105MCM, DNA repli 26.5 65 0.0022 27.8 4.2 69 55-164 7-75 (114)
33 1z9e_A PC4 and SFRS1 interacti 25.6 45 0.0015 29.9 3.1 66 61-140 8-77 (127)
34 1o5h_A Formiminotetrahydrofola 25.4 91 0.0031 29.8 5.4 61 78-140 124-193 (214)
35 2e8g_A Hypothetical protein PH 23.0 1.6E+02 0.0054 28.8 6.7 66 83-149 14-89 (241)
36 4fu3_A Regulation of nuclear P 22.2 1.7E+02 0.0059 24.6 6.1 97 46-153 21-127 (135)
37 4hfx_A Transcription elongatio 20.2 45 0.0015 28.5 2.0 42 43-87 25-75 (97)
38 3qhp_A Type 1 capsular polysac 20.1 79 0.0027 26.0 3.4 33 130-162 126-158 (166)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=2.2e-59 Score=436.54 Aligned_cols=159 Identities=42% Similarity=0.788 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHh-hcCCCchhhhhhHHH
Q 010786 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALA 87 (501)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL-~d~gK~WR~IYKALt 87 (501)
+.||+++|+|+|+|++||++|++||||||||||||++++|+|||++||++++|.+||++||+|| .+.+++||||||||+
T Consensus 16 ~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~ 95 (176)
T 1xgw_A 16 WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLL 95 (176)
T ss_dssp ------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999996 678999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccccccC
Q 010786 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167 (501)
Q Consensus 88 LLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~GvsS 167 (501)
||||||+||||+||+|+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+||
T Consensus 96 LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 96 LLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=1.2e-57 Score=415.37 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=133.7
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcC-CCchhhhhhHHHHHHHHHHcC
Q 010786 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAET-GKDWRYVYKALAVIEYLISHG 96 (501)
Q Consensus 18 Vkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~-gK~WR~IYKALtLLEYLLkNG 96 (501)
+.|+|+|||++|+|||||||||||||++++|+|||++||++.+|.+||++||+||.++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999999999999987 689999999999999999999
Q ss_pred CHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccccc
Q 010786 97 SERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (501)
Q Consensus 97 SErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~Gv 165 (501)
||+||+|+|+|+++|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=1.1e-54 Score=392.94 Aligned_cols=143 Identities=41% Similarity=0.753 Sum_probs=141.0
Q ss_pred cCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 010786 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (501)
Q Consensus 23 ~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVd 102 (501)
+|||++|++||||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcccccc
Q 010786 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (501)
Q Consensus 103 diR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER~KAkk~R~Ky~Gv 165 (501)
|+|+|++.|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=1.7e-54 Score=393.58 Aligned_cols=143 Identities=41% Similarity=0.773 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHH
Q 010786 10 TVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVI 89 (501)
Q Consensus 10 tvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLL 89 (501)
++++++|+|+|+|++||++|++||||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhcChHHHHHHH
Q 010786 90 EYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (501)
Q Consensus 90 EYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D~e~LreER 152 (501)
||||+||||+||+|+|+|++.|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=1.5e-34 Score=261.22 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=110.9
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccCc--hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 010786 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (501)
Q Consensus 29 E~KVREATNNDpWGPt~slM~EIAqaTyn~--~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~ 106 (501)
+.||++||+||||||++.+|+|||++||++ +.|.+||++||+||.++ .|+++||||+||+||++||+++|++++|.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 468999999999999999999999999997 55899999999999996 58899999999999999999999999999
Q ss_pred hhhhhhcccceEEeCC--CCcchhhHHHHHHHHHHHHhcChHH
Q 010786 107 HTFQISSLSSFEYVEP--SGKDMGINVRKKAENIVALLNNKDK 147 (501)
Q Consensus 107 hi~~Ir~L~~FqYvD~--~GkD~GinVReKAk~IleLL~D~e~ 147 (501)
|+++|++|++|+|+++ +|+|+|++||++|++|++||.|++.
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999966 8999999999999999999999873
No 6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.63 E-value=8.6e-16 Score=153.15 Aligned_cols=127 Identities=22% Similarity=0.331 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchh-HHHHHHHHHHHhhcCCCchhhhhhHH
Q 010786 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSE-CQMVMNVLWTRLAETGKDWRYVYKAL 86 (501)
Q Consensus 8 ~qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~~-y~~IM~vLwKRL~d~gK~WR~IYKAL 86 (501)
.|++++=-..+|+.|++ +++|+.|+.||+++.|+|..+.+.+|..+|++... +..||..|++||. .++|+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~KaL 86 (310)
T 3zym_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (310)
T ss_dssp --CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHHH
Confidence 46677766788898888 99999999999999999999999999999998764 7899999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCC-CCcchhhHHHHHHHHH
Q 010786 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEP-SGKDMGINVRKKAENI 138 (501)
Q Consensus 87 tLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~-~GkD~GinVReKAk~I 138 (501)
+||++||+.|++.|+.+++.|..++ .|.+|..... .|.|+|..||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~~~-~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 87 ITTHHLMVYGNERFIQYLASRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSCCC-CCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCCee-ecccccCCCCcCcccccHHHHHHHHHH
Confidence 9999999999999999998887644 8899853321 4677889999999887
No 7
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.62 E-value=1.1e-15 Score=150.09 Aligned_cols=127 Identities=22% Similarity=0.338 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCch-hHHHHHHHHHHHhhcCCCchhhhhhHH
Q 010786 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (501)
Q Consensus 8 ~qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~-~y~~IM~vLwKRL~d~gK~WR~IYKAL 86 (501)
.|++.+--..+||.|++ +++|+.|+.||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~KaL 86 (271)
T 3zyl_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (271)
T ss_dssp --CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 57777777888998888 9999999999999999999999999999999876 46999999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC-CCCcchhhHHHHHHHHH
Q 010786 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (501)
Q Consensus 87 tLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD-~~GkD~GinVReKAk~I 138 (501)
+||++||+.|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 87 ITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 99999999999999999988875 55888886432 24667788999999877
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.21 E-value=3.9e-11 Score=118.62 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCch-hHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 010786 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKALA 87 (501)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~~-~y~~IM~vLwKRL~d~gK~WR~IYKALt 87 (501)
|++|+.-..|++-. ..+++|+.|+.||+.+.|+|..+.+.+|..+|++.. ....++..|++|+ ..++|.+++|||+
T Consensus 6 ~~~~~~~~a~k~~~-~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~--~~~~w~va~K~Li 82 (299)
T 1hx8_A 6 QTINDRLLAARHSL-AGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS--QNANWVVVYKSLI 82 (299)
T ss_dssp -----------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc--cCCcHHHHHHHHH
Confidence 45555444554322 246999999999999999999999999999998874 3678999999995 4559999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC------------CCCcchhhHHHHHHHHHHHH
Q 010786 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE------------PSGKDMGINVRKKAENIVAL 141 (501)
Q Consensus 88 LLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD------------~~GkD~GinVReKAk~IleL 141 (501)
||++||+.|++.++.++..+.. |-.|.+|.-.. ..|.|+|..||.-|+-|.+-
T Consensus 83 vlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r 147 (299)
T 1hx8_A 83 TTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK 147 (299)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999976533 44566772111 12447888999999866543
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.79 E-value=9.5e-05 Score=67.58 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=84.1
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
-++++.+|.+||+...-.|.-.+..+|++.-. +...-.+.+..|.|||... +-...+-||+|||.|++|+..+|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46889999999997666667677777776642 3356678999999999864 44566779999999999998887765
Q ss_pred HHh--hhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc----ChHHHHHHHHHHHHhhcc
Q 010786 104 IIE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN----NKDKIQEVRNKASANREK 161 (501)
Q Consensus 104 iR~--hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~----D~e~LreER~KAkk~R~K 161 (501)
+-. -+..|..|- ..+ .-..||+|+.++++-.. +...|...|.--+.+|.+
T Consensus 91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Confidence 532 222222111 111 12379999998887543 233344445545555543
No 10
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.78 E-value=0.0002 Score=65.11 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=79.1
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi 104 (501)
|+++..|.+||+..--.|.-..+-||++.-. +...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999999997655566667777776643 23556789999999998 445777777799999999999999998887
Q ss_pred H--hhhh-hhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 105 I--EHTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 105 R--~hi~-~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
- +-+. .|..|- .+.. ..-..||+|+.+|+.-..
T Consensus 94 ask~Fl~e~L~kl~-----~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKLL-----NPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGGG-----SGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHh-----cCCC-CCcHHHHHHHHHHHHHHH
Confidence 4 3332 122221 1110 123479999988887654
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.77 E-value=0.00017 Score=68.67 Aligned_cols=128 Identities=15% Similarity=0.210 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 010786 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (501)
Q Consensus 24 nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVd 102 (501)
.-+++|..|.+||+...-.|.-.+..+|++.-... ..-.+.|..|.|||.. ++-..++-||+|||.|++|+-.+|-.
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45789999999999877777777888888775443 3457899999999984 57778999999999999998888777
Q ss_pred HH--HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHh----cChHHHHHHHHHHHHhhcc
Q 010786 103 DI--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL----NNKDKIQEVRNKASANREK 161 (501)
Q Consensus 103 di--R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL----~D~e~LreER~KAkk~R~K 161 (501)
++ ++-+..|..|- . ......||+|+.+|+.-. .++..|...+.--+.+|.+
T Consensus 83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVE 139 (226)
T ss_dssp HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Confidence 65 22233332221 1 112358999999888754 3445555555555555543
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.76 E-value=0.00016 Score=66.58 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
.++++.+|.+||+...-.|.-.+..+|++.-. +...-.+.+..|.|||... +-...+-||+|||.|++|+..+|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 57899999999997666667677778887642 2356678999999999864 67788999999999999998888776
Q ss_pred HHhh--hhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 104 IIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 104 iR~h--i~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
+-.. +..|..|-.=+|. |...-..||+|+.+|++-..
T Consensus 89 vas~~Fl~eL~kl~~~k~~---~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYL---GDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCC---CTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccccC---CCCCCHHHHHHHHHHHHHHH
Confidence 6332 3322222111121 22344699999999887554
No 13
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.73 E-value=0.00034 Score=63.37 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=79.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi 104 (501)
++++.+|.+||+...-.|.-.+..+|++.-. +...-.+.+..|.|||..+ ++...++-||+|||.|++|+-.+|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 5899999999997666667777777777642 2356778999999999853 4677778899999999999988887766
Q ss_pred Hh--hhhh--hhcccceEEeCCCCcchhhHHHHHHHHHHHHhcC
Q 010786 105 IE--HTFQ--ISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (501)
Q Consensus 105 R~--hi~~--Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~D 144 (501)
-+ -+.. ++.+ .+++ +.-..||+|+.+++.-..+
T Consensus 94 a~~~fl~e~Lvk~~------~~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTI------LPKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHH------STTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh------ccCC-CCcHHHHHHHHHHHHHHHH
Confidence 32 2222 2222 1111 1235899999888876543
No 14
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.72 E-value=0.00024 Score=63.28 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=78.0
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVdd 103 (501)
-++.+.+|.+||+...-.|.-....+|++.-... ..-.+.|..|.|||... +-+..+-||+|||.|++|+-.+|-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4788999999999866677777888888876443 45667999999999864 55678889999999999998887765
Q ss_pred H--HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHh
Q 010786 104 I--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 104 i--R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL 142 (501)
+ ++-+..|..|-. . .-..||+|+.+++.-.
T Consensus 81 vas~~Fl~el~~l~~-----~----~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN-----K----GHPKVCEKLKALMVEW 112 (140)
T ss_dssp HSSHHHHHHHHHHHH-----H----SCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhc-----c----CCHHHHHHHHHHHHHH
Confidence 5 333333222211 0 1248999998888654
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.54 E-value=0.00092 Score=60.26 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=78.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH--
Q 010786 28 IEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI-- 104 (501)
Q Consensus 28 ~E~KVREATNNDpWGPt~slM~EIAqaTy-n~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi-- 104 (501)
++..|.+||+.-.-.|.-.+..+|++.-. +...-.+.|..|.|||.. ++-...+-||+|||.|++|+..+|-.++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 57889999997655666677778877642 235677899999999974 4778889999999999999999987776
Q ss_pred HhhhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 105 R~hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
++-+..|..|-.=+| .|...-..||+|+.+|+.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 333333322211012 122234699999988887553
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.52 E-value=0.00068 Score=61.40 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 010786 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (501)
Q Consensus 24 nySe~E~KVREATNNDpWGPt~slM~EIAqaTyn~-~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVd 102 (501)
.-++++.+|.+||+...-.|.-....+|++.-... ..-.+.|..|.|||.. ++-+..+-||+|||.|++|+-.+|-.
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34789999999999877778888899999886443 4566799999999984 47788899999999999999999877
Q ss_pred HHH--hhhhhhhc-ccceEEeCCCCcchhhHHHHHHHHHHHHh
Q 010786 103 DII--EHTFQISS-LSSFEYVEPSGKDMGINVRKKAENIVALL 142 (501)
Q Consensus 103 diR--~hi~~Ir~-L~~FqYvD~~GkD~GinVReKAk~IleLL 142 (501)
++- +-+..|.. +.. +| .|...-..||+|+.+|+.-.
T Consensus 86 eias~~Fl~eL~kl~~~-k~---~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSP-KY---LGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHTSHHHHHHHHHHHCT-TT---TGGGSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcc-cc---cCCCCCHHHHHHHHHHHHHH
Confidence 662 22322221 111 11 12223468999999888655
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.50 E-value=0.00054 Score=64.50 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=77.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 010786 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (501)
Q Consensus 26 Se~E~KVREATNNDpWGPt~slM~EIAqaTyn-~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddi 104 (501)
|.++.+|.+||+...-.|.-.++.+|++.-.. ...-.+.|..|.|||.. ++-...+-||+|||.|++|+-.+|-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67899999999976666777778888877533 34567899999999986 4778899999999999999887776664
Q ss_pred Hh--hhhhhhcccceEEeCCCCcchhhHHHHHHHHHHHHhc
Q 010786 105 IE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (501)
Q Consensus 105 R~--hi~~Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~ 143 (501)
-. -+..|..| +.. ..-..||+|+.+|++-..
T Consensus 82 a~~~fl~~l~~l-----~~~---~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKENCEMFSSF-----LES---TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHHHHHHHHHH-----HHH---CSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-----hcC---CCcHHHHHHHHHHHHHHH
Confidence 22 22222221 110 123589999888876554
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=82.37 E-value=6 Score=35.24 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEe
Q 010786 41 WGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYV 120 (501)
Q Consensus 41 WGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYv 120 (501)
.+|.-..|..+|. .+...+..|+++|.++|... .-.|-+=.|-|++-+++|....++..+-.++..+=. .-|..+
T Consensus 23 Sk~~I~~LT~~a~--~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~-~~~~~~ 97 (144)
T 1sz9_A 23 SRPIITTLTKLAE--ENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK-RTYLLV 97 (144)
T ss_dssp CHHHHHHHHHHHH--HTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH-HHHHTS
T ss_pred cHhHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHhC
Confidence 4444444555555 46778999999999999764 345666789999999999777787777766553311 122222
Q ss_pred CCCCcchhhHHHHHHHHHHHHhcCh----------HHHHHHHHHHHH
Q 010786 121 EPSGKDMGINVRKKAENIVALLNNK----------DKIQEVRNKASA 157 (501)
Q Consensus 121 D~~GkD~GinVReKAk~IleLL~D~----------e~LreER~KAkk 157 (501)
| ..+|.|..+|+.+=... +.|+.-|+.-.+
T Consensus 98 d-------~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 98 D-------NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp C-------HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 2 48999999999988766 777777765443
No 19
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=79.04 E-value=2.6 Score=38.79 Aligned_cols=85 Identities=6% Similarity=0.112 Sum_probs=56.6
Q ss_pred cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH----HHHHHHcCCHh-HHHHHHhhhhhhhcccceEEeCCCCcchhhH
Q 010786 56 KKFSECQMVMNVLWTRLAETGKDWRYVYKALAV----IEYLISHGSER-AVDDIIEHTFQISSLSSFEYVEPSGKDMGIN 130 (501)
Q Consensus 56 yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtL----LEYLLkNGSEr-vVddiR~hi~~Ir~L~~FqYvD~~GkD~Gin 130 (501)
-.+-+|.+|++-+|++......+ |.+|++|+. --|-+++|..+ .+.-++.-+..|+.+.. ...|++
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~--------~~~GID 116 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN--------DYYGVD 116 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT--------TGGGBC
T ss_pred CCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--------ccCCcC
Confidence 34566778999999987654333 778887777 23446777765 44445555555554322 347888
Q ss_pred HHHHHHHHHHHhcChHHHH
Q 010786 131 VRKKAENIVALLNNKDKIQ 149 (501)
Q Consensus 131 VReKAk~IleLL~D~e~Lr 149 (501)
|..-...|-++|.|++.+.
T Consensus 117 v~~L~~~~~~~l~dp~~~~ 135 (161)
T 2ijq_A 117 LLDVRTTVTNALSDPSALH 135 (161)
T ss_dssp HHHHHHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHhhCCccCC
Confidence 8888888888888877543
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=70.39 E-value=38 Score=28.81 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC----HhHHHHHHhhhhhhhcccceE
Q 010786 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTFQISSLSSFE 118 (501)
Q Consensus 44 t~slM~EIAqaT-yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGS----ErvVddiR~hi~~Ir~L~~Fq 118 (501)
+..-.+.++... ++...+..|+++|.++|.....+ +-+-.|-|++-+|+|.. ..++..+...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~--~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP--HRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 445566666665 56778899999999999876443 44677899999999863 34555555444322 22
Q ss_pred Ee-CCCCcchhhHHHHHHHHHHHHhc-----ChHHHHHHHHH
Q 010786 119 YV-EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNK 154 (501)
Q Consensus 119 Yv-D~~GkD~GinVReKAk~IleLL~-----D~e~LreER~K 154 (501)
.+ ++ .+|+|..+|+++-+ +++.|++-|+.
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 22 32 35788888888865 46777766653
No 21
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=64.90 E-value=64 Score=28.46 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCH-------
Q 010786 27 EIEQKVLDATDNEPWGPHGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE------- 98 (501)
Q Consensus 27 e~E~KVREATNNDpWGPt~slM~EIAqaT-yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSE------- 98 (501)
+.|.++.+-+...+- -+...++.|..++ .+...+..|+..|.++|..-. -++-+=.|-|++=+++|.-.
T Consensus 6 ~f~~~L~~L~~~k~~-~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~~ 82 (145)
T 3d9j_A 6 TFNSELYSLNDYKPP-ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEKD 82 (145)
T ss_dssp HHHHHHHGGGGSCSS-CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCccc
Confidence 445555555554422 5666666666654 567788999999999998763 34668899999999999665
Q ss_pred hHHHHHHhhhhh-hhcccceEEeCCCCcchhhHHHHHHHHHHHHhc-----ChHHHHHHHHHHH
Q 010786 99 RAVDDIIEHTFQ-ISSLSSFEYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKAS 156 (501)
Q Consensus 99 rvVddiR~hi~~-Ir~L~~FqYvD~~GkD~GinVReKAk~IleLL~-----D~e~LreER~KAk 156 (501)
.++..+..++.. +. .-|. ....+|.|.++|+++=+ .++.|+.-|....
T Consensus 83 ~f~~~F~~~L~~~f~--~~~~--------~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQ--NLYR--------CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp SHHHHHHHHHHHHHH--HHTS--------SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--HHHh--------CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 466666555442 22 1121 12478899999998864 6677777776554
No 22
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=47.62 E-value=32 Score=35.78 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHH------HHHHHHccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcC
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTAL------AEIAQATKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHG 96 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM------~EIAqaTyn~~~y~~IM~vLwKRL~d--~gK~WR~IYKALtLLEYLLkNG 96 (501)
-+-++.-|+.-..-=|+..+.+++ .+|.+.. +..+|..||..|.+||.. ...+.+..-.||.+. .
T Consensus 246 p~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------n 318 (403)
T 3fga_B 246 STLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------N 318 (403)
T ss_dssp GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------G
T ss_pred chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------c
Confidence 344445555555544555555443 3444434 678999999999999975 345888888888776 2
Q ss_pred CHhHHHHHHhhhhhhhcccceEEeCCC-CcchhhHHHHHHHHHHHHhcC
Q 010786 97 SERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNN 144 (501)
Q Consensus 97 SErvVddiR~hi~~Ir~L~~FqYvD~~-GkD~GinVReKAk~IleLL~D 144 (501)
.+.++.-+.+|...|-.+- |.-...+ -.-|...||..|-.++.+|.+
T Consensus 319 Ne~i~~li~~n~~~IlPii-~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIM-FPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHH-HHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3455555555544332210 0000001 123888999999999999954
No 23
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=38.72 E-value=17 Score=36.60 Aligned_cols=25 Identities=8% Similarity=0.307 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhcCh-HHHHHHHH
Q 010786 129 INVRKKAENIVALLNNK-DKIQEVRN 153 (501)
Q Consensus 129 inVReKAk~IleLL~D~-e~LreER~ 153 (501)
..|++.+++|++++... +.|+.-+.
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchhc
Confidence 47999999999998743 44555443
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=36.86 E-value=68 Score=28.71 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=42.1
Q ss_pred HhhcCCCCCCCHHHHHHH---HHHc--cCchhHHHHHHHHHHHhh-cCCCchhhhhhHHHHHHHHHHcCCHhH
Q 010786 34 DATDNEPWGPHGTALAEI---AQAT--KKFSECQMVMNVLWTRLA-ETGKDWRYVYKALAVIEYLISHGSERA 100 (501)
Q Consensus 34 EATNNDpWGPt~slM~EI---AqaT--yn~~~y~~IM~vLwKRL~-d~gK~WR~IYKALtLLEYLLkNGSErv 100 (501)
+..++..|----..+..| ++.. .....|.+|+..|.++|. + .+.+....++..|..|++.....+
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHhhhH
Confidence 344556664433333333 3331 123568899999999995 5 477788899999999997655443
No 25
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=36.56 E-value=2.1e+02 Score=25.61 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhh
Q 010786 33 LDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQIS 112 (501)
Q Consensus 33 REATNNDpWGPt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir 112 (501)
.+=.-+=+|.....+..-++.. . ..++..|++-|......|.. -||+||+.|=+.+.+..++.-+..|-
T Consensus 37 L~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~y-----wil~~lv~~~~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 37 LKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWKY-----WVIKLMIPYLIYPNKQLVKSELERLS 105 (134)
T ss_dssp HGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHHH-----HHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445577898887777666642 1 36777777777777767753 58999999999998888888777665
Q ss_pred cccceEEeCCCCcchhhHHHHHHHHHHHH
Q 010786 113 SLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (501)
Q Consensus 113 ~L~~FqYvD~~GkD~GinVReKAk~IleL 141 (501)
. .+.+.+.-..|.+-|++|++-
T Consensus 106 ~-------~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 106 S-------LEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp T-------CCCSSGGGHHHHHHHHHHHHH
T ss_pred h-------CCCcchHHHHHHHHHHHHHHH
Confidence 3 445556777888889888864
No 26
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=36.06 E-value=39 Score=33.05 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHH-HHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTALAE-IAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS 97 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~slM~E-IAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGS 97 (501)
+.+-|..||||.- +|.++++ |++++|+. +|++.|.+-|.+. -|-..-.||.||--+++.=+
T Consensus 3 me~~e~d~reala------tge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~ 64 (253)
T 2db0_A 3 MEEEEFDIREALA------NGEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTRE 64 (253)
T ss_dssp ------CHHHHHH------TTCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCG
T ss_pred chHhhhhHHHHHh------hhhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhH
Confidence 4567889999985 4556776 67889985 5666777667665 89999999999887766544
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.17 E-value=1.6e+02 Score=30.80 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=41.4
Q ss_pred CCCCCC---CHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc------CCHh----HHHHH
Q 010786 38 NEPWGP---HGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH------GSER----AVDDI 104 (501)
Q Consensus 38 NDpWGP---t~slM~EIAqaTyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkN------GSEr----vVddi 104 (501)
++.||+ ++=.|+.+..-+- .++..-|+.|..+|.+..+.-..+|--.+.|--+++. ..+. +-+++
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~e--r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVD--QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred hhhccCCCCccchHHHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 566764 6666666544432 5566777778888777655555555555444444432 3333 34456
Q ss_pred Hhhhhhhh
Q 010786 105 IEHTFQIS 112 (501)
Q Consensus 105 R~hi~~Ir 112 (501)
+.||..|+
T Consensus 119 e~~i~~lk 126 (390)
T 1deq_A 119 RSRIEILR 126 (390)
T ss_pred HHHHHHHH
Confidence 66666554
No 28
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=30.37 E-value=44 Score=28.70 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc-CCHhHHHHHHhhh---hhhhcccceEEeCCCCcchhhHHHHHHH
Q 010786 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHT---FQISSLSSFEYVEPSGKDMGINVRKKAE 136 (501)
Q Consensus 61 y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkN-GSErvVddiR~hi---~~Ir~L~~FqYvD~~GkD~GinVReKAk 136 (501)
+.++-..|...|.-. --.|.|||.+||-|-.= .... -++.|- +.|+.|++|.- ...||++|.
T Consensus 8 l~~L~~~ik~~L~~~---~~Dv~kcl~~L~~l~~l~~T~~---mL~rnpe~V~t~kklRry~g--------~q~Ir~kA~ 73 (98)
T 2b4j_C 8 LQRIHAEIKNSLKID---NLDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKV--------SQVIMEKST 73 (98)
T ss_dssp HHHHHHHHHHHTCTT---SCCHHHHHHHHHHHHTCCCCHH---HHHTTHHHHHHHHHHTTCTT--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---CCCHHHHHHHHHHHhcccccHH---HHhhChHHHHHHHHHHHHhc--------hHHHHHHHH
Confidence 334444444444322 22578888888877543 2222 234443 45666666632 168888888
Q ss_pred HHHH
Q 010786 137 NIVA 140 (501)
Q Consensus 137 ~Ile 140 (501)
.|.+
T Consensus 74 ~iY~ 77 (98)
T 2b4j_C 74 MLYN 77 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 29
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=28.89 E-value=1.6e+02 Score=31.09 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHH------HHHHHHHccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcC
Q 010786 25 VPEIEQKVLDATDNEPWGPHGTA------LAEIAQATKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHG 96 (501)
Q Consensus 25 ySe~E~KVREATNNDpWGPt~sl------M~EIAqaTyn~~~y~~IM~vLwKRL~d--~gK~WR~IYKALtLLEYLLkNG 96 (501)
-+-++.-|+--..-=|+.-+.++ +.+|.+.+ ...+|..||..|.+||.. ...+.+..-.||.++.
T Consensus 279 p~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~-~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~------ 351 (449)
T 2npp_B 279 STLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------ 351 (449)
T ss_dssp GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------
T ss_pred cHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC------
Confidence 34444555555555566655553 33444444 778999999999999976 4568888888887652
Q ss_pred CHhHHHHHHhhhhhhhcccceEEeCCC-CcchhhHHHHHHHHHHHHhcCh
Q 010786 97 SERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNNK 145 (501)
Q Consensus 97 SErvVddiR~hi~~Ir~L~~FqYvD~~-GkD~GinVReKAk~IleLL~D~ 145 (501)
.+.++.-+.+|...|-.+ =|.-...+ -.-|-..||..|.+++.+|.+-
T Consensus 352 N~~i~~li~~n~~~IlPi-i~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 352 NEYIMSLISDNAAKILPI-MFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CHHHHHHHHTTHHHHHHH-HHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhchhhhHHh-hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 233333444443322110 00000011 1237789999999999988653
No 30
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=27.34 E-value=1.8e+02 Score=25.25 Aligned_cols=103 Identities=9% Similarity=0.161 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC----HhHHHHHHhhhhh-hhcccce
Q 010786 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTFQ-ISSLSSF 117 (501)
Q Consensus 44 t~slM~EIAqaT-yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGS----ErvVddiR~hi~~-Ir~L~~F 117 (501)
+..-++.+++.. ++......|++++.++|......-++-+--|-|+.-+|.|.. ..++..+...+.. +..+ |
T Consensus 18 sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~--~ 95 (142)
T 2km4_A 18 SQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRI--N 95 (142)
T ss_dssp CHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH--H
Confidence 555566777776 567788899999999998864444555666777777776543 3466666665542 2211 1
Q ss_pred EEeCCCCcchhhHHHHHHHHHHHHhc-----ChHHHHHHHHHH
Q 010786 118 EYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKA 155 (501)
Q Consensus 118 qYvD~~GkD~GinVReKAk~IleLL~-----D~e~LreER~KA 155 (501)
... ...+|+|..+|+++-+ +++.|.+-|...
T Consensus 96 ~~~-------~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l 131 (142)
T 2km4_A 96 QEF-------PRDLKKKLSRVVNILKERNIFSKQVVNDIERSL 131 (142)
T ss_dssp HHS-------CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HcC-------CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 111 2468899999998864 445566555543
No 31
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.65 E-value=1.8e+02 Score=24.04 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=47.8
Q ss_pred cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHH---HHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHH
Q 010786 56 KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVI---EYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVR 132 (501)
Q Consensus 56 yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLL---EYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVR 132 (501)
-++-+|.+|++.+|+.... .=|..|+.|+.| -|-+.+|.. ...-++.-+..|+.+.. ...|++|.
T Consensus 15 g~~~eaHEvlE~~W~~~~~---~~~~~~qGLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~--------~~~gidv~ 82 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATG---EERRLLQGVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPC--------PLMGLDWR 82 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCS--------SBTTBCHH
T ss_pred CChHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCC--------ccCCcCHH
Confidence 3466777899999998832 446666666554 344447887 55556666666654321 14677777
Q ss_pred HHHHHHHHHhc
Q 010786 133 KKAENIVALLN 143 (501)
Q Consensus 133 eKAk~IleLL~ 143 (501)
.-...|-++|.
T Consensus 83 ~L~~~~~~~l~ 93 (94)
T 2cwy_A 83 SLLQEARRRLG 93 (94)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 76666666653
No 32
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=26.48 E-value=65 Score=27.78 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCcchhhHHHHH
Q 010786 55 TKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKK 134 (501)
Q Consensus 55 Tyn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~L~~FqYvD~~GkD~GinVReK 134 (501)
+-.+++|..|+++|-.||..... .. +..|..+..-|.==
T Consensus 7 ~Is~d~Y~~i~n~lV~~ir~~E~--------------------------------~~---------~~~G~~~~eLv~WY 45 (114)
T 2klq_A 7 RLGFSEYSRISNLIVLHLRKVEE--------------------------------EE---------DESALKRSELVNWY 45 (114)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH--------------------------------HT---------SSSCBCHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHhh--------------------------------hc---------ccCCCCHHHHHHHH
Confidence 34678899999999877755310 00 33577777777777
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHhhccccc
Q 010786 135 AENIVALLNNKDKIQEVRNKASANREKYFG 164 (501)
Q Consensus 135 Ak~IleLL~D~e~LreER~KAkk~R~Ky~G 164 (501)
.+++-+-|.+++.|.+||+.+++.=+|++-
T Consensus 46 Leq~e~~i~seeel~~e~~lv~kVI~rLI~ 75 (114)
T 2klq_A 46 LKEIESEIDSEEELINKKRIIEKVIHRLTH 75 (114)
T ss_dssp HHHHTTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 777777889999999999999987666654
No 33
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=25.60 E-value=45 Score=29.93 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc-CCHhHHHHHHhhhh---hhhcccceEEeCCCCcchhhHHHHHHH
Q 010786 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHTF---QISSLSSFEYVEPSGKDMGINVRKKAE 136 (501)
Q Consensus 61 y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkN-GSErvVddiR~hi~---~Ir~L~~FqYvD~~GkD~GinVReKAk 136 (501)
+.++-..|...|.-. --.|.|||.+||-|-.= .... -++.|-. .|+.|++|.- + ..||++|.
T Consensus 8 L~~L~~~Ik~~L~v~---~~Dv~kCl~~Leel~~l~vT~~---mL~Rnpe~V~TlkklRrY~g-n-------q~Ir~kA~ 73 (127)
T 1z9e_A 8 LQRIHAEIKNSLKID---NLDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKV-S-------QVIMEKST 73 (127)
T ss_dssp HHHHHHHHHHHTCGG---GCCHHHHHHHHHHHHHSCCCHH---HHGGGHHHHHHHHHHTTCTT-C-------SSHHHHHH
T ss_pred HHHHHHHHHHHHccC---CCCHHHHHHHHHHHccccccHH---HHhhChHHHHHHHHHHHHhc-c-------HHHHHHHH
Confidence 334444444444322 22578889888887654 2222 2444544 5566666632 1 58899998
Q ss_pred HHHH
Q 010786 137 NIVA 140 (501)
Q Consensus 137 ~Ile 140 (501)
.|..
T Consensus 74 ~iY~ 77 (127)
T 1z9e_A 74 MLYN 77 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 34
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=25.35 E-value=91 Score=29.77 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=39.7
Q ss_pred chhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhc-c--------cceEEeCCCCcchhhHHHHHHHHHHH
Q 010786 78 DWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISS-L--------SSFEYVEPSGKDMGINVRKKAENIVA 140 (501)
Q Consensus 78 ~WR~IYKALtLLEYLLkNGSErvVddiR~hi~~Ir~-L--------~~FqYvD~~GkD~GinVReKAk~Ile 140 (501)
--|.+++.|-|++.|+.+|...+|.|+.--...++. + -+...+. ..+.-..+|+++.+|++
T Consensus 124 ia~~~~~~l~l~~~la~~GN~~aiSD~gvaa~l~~aAi~gA~lNV~INL~~ik--De~~~~~~~~e~~~l~~ 193 (214)
T 1o5h_A 124 VIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEIS--DETFRKNMLEELEEQEA 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999886544433321 1 1122221 12345578888888777
No 35
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=23.04 E-value=1.6e+02 Score=28.82 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHcCC-------HhHHHHHHhhhhhhhcccceEEeCCC---CcchhhHHHHHHHHHHHHhcChHHHH
Q 010786 83 YKALAVIEYLISHGS-------ERAVDDIIEHTFQISSLSSFEYVEPS---GKDMGINVRKKAENIVALLNNKDKIQ 149 (501)
Q Consensus 83 YKALtLLEYLLkNGS-------ErvVddiR~hi~~Ir~L~~FqYvD~~---GkD~GinVReKAk~IleLL~D~e~Lr 149 (501)
-||.-+|+-.+.++. -+++..+++-...|+.| .|.|.++. +..+=..|.++++.|++.|.-+.-|+
T Consensus 14 e~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~iq~l-~ysyl~~~~L~~~~~~~~~~~~~~~i~~~l~g~~Wl~ 89 (241)
T 2e8g_A 14 EKSVELFIRTIEGAKFRGQWDKKRSIQLAKEMIPDIQAL-RYSYIDPEELVDTPQMKDLKEKAKGIIEALGGEDWHH 89 (241)
T ss_dssp HHHHHHHHHHHHTSCCCTTSCHHHHHHHHHHHHHHHHHH-HTTCCCHHHHTTSHHHHHHHHHHHHHHHHHTSTTHHH
T ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhee-EEeccCHHHHhcChhHHHHHHHHHHHHHHhcchhHHH
Confidence 345555555555544 34555566666666654 36666542 33345699999999999994444333
No 36
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.17 E-value=1.7e+02 Score=24.60 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC---HhHHHHHHhhhhhh-hcccceEEe
Q 010786 46 TALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS---ERAVDDIIEHTFQI-SSLSSFEYV 120 (501)
Q Consensus 46 slM~EIAqaT-yn~~~y~~IM~vLwKRL~d~gK~WR~IYKALtLLEYLLkNGS---ErvVddiR~hi~~I-r~L~~FqYv 120 (501)
.-++.++... ++......|+++|.++|.....+ +-+-.|-|++-+|+|.. ..++..+..++..| ..+ |.-.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~--~~~~ 96 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHV--AREA 96 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHcC
Confidence 3344445444 45677889999999999876543 34568889999988753 23566665554422 111 1111
Q ss_pred CCCCcchhhHHHHHHHHHHHHhc-----ChHHHHHHHH
Q 010786 121 EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRN 153 (501)
Q Consensus 121 D~~GkD~GinVReKAk~IleLL~-----D~e~LreER~ 153 (501)
+ ..+|+|..+|+++-+ +++.|++-|.
T Consensus 97 ~-------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 97 D-------EGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp H-------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 2 246778888888765 4555655554
No 37
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=20.21 E-value=45 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHccCchhHHHHHHHHHHHhhc---------CCCchhhhhhHHH
Q 010786 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE---------TGKDWRYVYKALA 87 (501)
Q Consensus 43 Pt~slM~EIAqaTyn~~~y~~IM~vLwKRL~d---------~gK~WR~IYKALt 87 (501)
++..+|..|=..+ ..+.+-.+.||+++.. ....||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~n---P~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEYN---HVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhC---cccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 4666666665443 4667778899999853 2579999998654
No 38
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=20.09 E-value=79 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhhccc
Q 010786 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (501)
Q Consensus 130 nVReKAk~IleLL~D~e~LreER~KAkk~R~Ky 162 (501)
++..-++.|..||.|++.+++.++++++...+|
T Consensus 126 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 126 NAKDLSAKIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 577789999999999999998888888765543
Done!