Query 010787
Match_columns 501
No_of_seqs 442 out of 3332
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.2E-80 2.7E-85 652.3 40.1 447 10-500 194-641 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 2.3E-55 4.9E-60 429.2 33.0 345 6-398 83-433 (536)
3 PLN03192 Voltage-dependent pot 100.0 1.9E-52 4.1E-57 465.6 40.2 327 22-402 173-500 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 7.6E-49 1.6E-53 387.2 23.2 368 22-439 329-696 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.9E-48 6.4E-53 384.2 23.6 324 6-390 316-643 (815)
6 PRK09392 ftrB transcriptional 99.7 7.7E-16 1.7E-20 147.2 17.8 153 264-443 6-158 (236)
7 PRK11753 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 135.1 18.2 162 274-461 6-178 (211)
8 PRK11161 fumarate/nitrate redu 99.6 6.4E-14 1.4E-18 133.9 17.2 122 267-400 15-138 (235)
9 PRK10402 DNA-binding transcrip 99.5 2.6E-13 5.6E-18 128.9 15.5 108 281-399 24-132 (226)
10 cd00038 CAP_ED effector domain 99.5 3.8E-13 8.3E-18 112.2 12.9 111 272-393 1-112 (115)
11 COG0664 Crp cAMP-binding prote 99.5 3.7E-12 8.1E-17 119.2 17.7 123 268-401 3-126 (214)
12 PF00027 cNMP_binding: Cyclic 99.4 7.7E-13 1.7E-17 106.1 10.2 89 291-390 2-91 (91)
13 smart00100 cNMP Cyclic nucleot 99.4 3.9E-12 8.6E-17 106.7 14.3 113 272-393 1-114 (120)
14 PRK09391 fixK transcriptional 99.4 2.6E-12 5.6E-17 122.3 14.2 160 282-471 32-205 (230)
15 PRK13918 CRP/FNR family transc 99.3 1.9E-11 4.1E-16 114.0 14.8 152 287-461 5-159 (202)
16 TIGR03697 NtcA_cyano global ni 99.3 1.6E-11 3.4E-16 113.5 13.9 97 296-401 1-98 (193)
17 KOG0614 cGMP-dependent protein 99.3 3E-12 6.4E-17 127.8 9.0 131 261-400 268-399 (732)
18 COG2905 Predicted signal-trans 99.3 2.8E-11 6E-16 122.6 15.3 116 264-393 6-121 (610)
19 PF07885 Ion_trans_2: Ion chan 99.3 4.1E-11 8.8E-16 93.8 9.9 55 140-194 24-78 (79)
20 PLN02868 acyl-CoA thioesterase 99.2 8.7E-11 1.9E-15 121.5 13.2 114 264-390 7-120 (413)
21 KOG0614 cGMP-dependent protein 99.2 3.9E-11 8.5E-16 119.9 9.6 131 257-402 146-276 (732)
22 KOG1113 cAMP-dependent protein 99.2 3.5E-11 7.7E-16 115.2 8.2 122 264-400 121-242 (368)
23 KOG3713 Voltage-gated K+ chann 99.2 2.1E-10 4.6E-15 115.0 11.2 55 143-197 380-434 (477)
24 KOG1545 Voltage-gated shaker-l 98.9 3.1E-10 6.6E-15 108.4 2.0 46 143-188 396-441 (507)
25 PF00520 Ion_trans: Ion transp 98.9 1.5E-08 3.3E-13 93.3 11.5 134 12-189 61-200 (200)
26 KOG1419 Voltage-gated K+ chann 98.8 3.7E-08 8E-13 99.4 12.9 89 136-231 265-353 (654)
27 KOG1113 cAMP-dependent protein 98.8 7.8E-09 1.7E-13 99.4 7.5 115 259-387 234-348 (368)
28 KOG1420 Ca2+-activated K+ chan 98.6 4E-08 8.7E-13 99.2 5.3 130 137-275 285-418 (1103)
29 PRK10537 voltage-gated potassi 98.6 1.3E-06 2.7E-11 89.1 14.5 54 140-193 168-221 (393)
30 KOG2968 Predicted esterase of 98.3 8E-07 1.7E-11 94.5 6.6 114 279-403 499-613 (1158)
31 KOG3684 Ca2+-activated K+ chan 98.3 3.1E-05 6.8E-10 77.3 15.9 93 137-237 284-376 (489)
32 KOG4390 Voltage-gated A-type K 98.1 3.3E-07 7.2E-12 88.7 -0.7 57 140-196 356-416 (632)
33 PF01007 IRK: Inward rectifier 98.0 3.4E-05 7.4E-10 76.7 11.2 56 139-194 83-140 (336)
34 KOG1418 Tandem pore domain K+ 97.8 3.5E-05 7.6E-10 80.0 7.4 59 140-198 115-173 (433)
35 KOG2968 Predicted esterase of 97.8 0.00013 2.9E-09 78.1 11.3 110 283-396 110-220 (1158)
36 PF04831 Popeye: Popeye protei 97.5 0.0036 7.8E-08 53.9 13.3 107 276-392 15-123 (153)
37 PRK11832 putative DNA-binding 97.5 0.0063 1.4E-07 55.9 15.4 96 280-389 14-110 (207)
38 KOG4404 Tandem pore domain K+ 97.1 0.0032 6.9E-08 60.6 9.3 57 141-197 187-251 (350)
39 KOG4404 Tandem pore domain K+ 97.0 0.00027 5.8E-09 67.7 1.0 54 139-192 79-132 (350)
40 KOG3542 cAMP-regulated guanine 96.7 0.0042 9.2E-08 64.8 7.4 115 261-389 277-392 (1283)
41 KOG3827 Inward rectifier K+ ch 96.5 0.013 2.9E-07 57.8 9.1 58 140-197 112-171 (400)
42 KOG1418 Tandem pore domain K+ 95.8 0.0028 6E-08 65.8 0.5 48 140-187 242-297 (433)
43 PLN03223 Polycystin cation cha 94.3 1.2 2.7E-05 51.2 15.3 32 167-198 1396-1427(1634)
44 KOG3542 cAMP-regulated guanine 94.3 0.061 1.3E-06 56.5 5.0 93 264-379 36-128 (1283)
45 KOG3193 K+ channel subunit [In 92.6 0.039 8.5E-07 56.5 0.4 41 141-181 218-258 (1087)
46 KOG3676 Ca2+-permeable cation 89.4 14 0.00031 40.5 15.8 75 152-227 600-681 (782)
47 KOG0498 K+-channel ERG and rel 87.1 48 0.001 36.8 18.2 43 248-290 371-418 (727)
48 TIGR03037 anthran_nbaC 3-hydro 84.5 3.6 7.8E-05 36.2 6.7 69 294-380 36-105 (159)
49 COG4709 Predicted membrane pro 83.2 9.2 0.0002 34.4 8.7 74 205-280 5-82 (195)
50 PRK13290 ectC L-ectoine syntha 79.6 13 0.00027 31.5 8.2 69 289-376 38-106 (125)
51 PF07883 Cupin_2: Cupin domain 78.0 3.4 7.4E-05 30.5 3.9 44 291-341 3-47 (71)
52 PF08006 DUF1700: Protein of u 77.5 17 0.00036 32.9 8.9 56 205-262 5-64 (181)
53 PRK13264 3-hydroxyanthranilate 77.0 6.2 0.00013 35.4 5.7 71 294-382 42-113 (177)
54 PF00060 Lig_chan: Ligand-gate 72.1 6.1 0.00013 34.0 4.5 75 137-217 41-115 (148)
55 PF13314 DUF4083: Domain of un 67.5 26 0.00057 25.0 5.8 46 167-215 5-56 (58)
56 KOG2302 T-type voltage-gated C 63.2 2.8E+02 0.0062 31.9 15.7 33 163-195 1357-1390(1956)
57 PF05899 Cupin_3: Protein of u 63.0 12 0.00026 28.3 3.9 30 307-342 26-55 (74)
58 PF14377 DUF4414: Domain of un 58.4 18 0.00038 29.8 4.4 44 218-261 52-105 (108)
59 TIGR00870 trp transient-recept 56.9 3.3E+02 0.0071 30.6 18.3 34 165-198 587-620 (743)
60 COG1917 Uncharacterized conser 54.9 28 0.0006 29.4 5.3 49 288-343 45-94 (131)
61 PF10011 DUF2254: Predicted me 52.8 70 0.0015 32.6 8.6 58 138-197 98-157 (371)
62 COG0662 {ManC} Mannose-6-phosp 52.5 36 0.00078 28.7 5.5 48 287-341 37-85 (127)
63 KOG1054 Glutamate-gated AMPA-t 51.6 18 0.0004 38.3 4.1 72 142-219 597-668 (897)
64 PF07697 7TMR-HDED: 7TM-HD ext 51.2 1.4E+02 0.0031 27.4 10.0 58 249-307 147-207 (222)
65 PF00520 Ion_trans: Ion transp 50.8 1.3E+02 0.0028 26.6 9.4 57 133-189 134-195 (200)
66 PF08016 PKD_channel: Polycyst 47.2 2.2E+02 0.0047 29.5 11.5 20 22-41 308-327 (425)
67 PF10322 7TM_GPCR_Sru: Serpent 45.6 1.8E+02 0.0038 28.9 9.8 40 153-193 187-226 (307)
68 PF06637 PV-1: PV-1 protein (P 45.3 3.4E+02 0.0074 27.5 13.4 38 458-495 378-416 (442)
69 smart00835 Cupin_1 Cupin. This 44.6 64 0.0014 27.8 6.0 53 288-342 32-86 (146)
70 PLN03192 Voltage-dependent pot 44.6 5.3E+02 0.011 29.4 20.6 43 217-264 357-399 (823)
71 PF08285 DPM3: Dolichol-phosph 43.1 1.7E+02 0.0036 23.3 7.7 40 181-220 48-90 (91)
72 TIGR00769 AAA ADP/ATP carrier 40.7 4.7E+02 0.01 27.7 13.6 35 136-177 139-174 (472)
73 PHA03029 hypothetical protein; 39.7 1.6E+02 0.0035 22.1 6.7 39 164-202 2-40 (92)
74 PF06052 3-HAO: 3-hydroxyanthr 38.0 1.1E+02 0.0023 26.8 6.0 59 305-380 52-110 (151)
75 PF12973 Cupin_7: ChrR Cupin-l 36.5 51 0.0011 25.8 3.8 64 287-375 25-88 (91)
76 PF02037 SAP: SAP domain; Int 35.9 61 0.0013 20.5 3.3 26 206-231 5-35 (35)
77 COG5559 Uncharacterized conser 35.2 41 0.00089 24.0 2.5 19 244-262 5-23 (65)
78 KOG4440 NMDA selective glutama 35.1 74 0.0016 34.2 5.4 54 141-194 614-667 (993)
79 KOG3609 Receptor-activated Ca2 35.0 2.4E+02 0.0053 31.6 9.5 17 141-157 554-570 (822)
80 KOG2302 T-type voltage-gated C 34.3 1.5E+02 0.0032 34.0 7.7 31 121-152 1636-1666(1956)
81 PHA02909 hypothetical protein; 32.4 1E+02 0.0023 21.7 4.1 19 55-73 43-61 (72)
82 PRK04190 glucose-6-phosphate i 32.0 2E+02 0.0044 26.3 7.3 50 289-341 71-130 (191)
83 TIGR03404 bicupin_oxalic bicup 30.7 1.3E+02 0.0028 30.7 6.4 51 288-341 247-299 (367)
84 TIGR03404 bicupin_oxalic bicup 30.7 1.3E+02 0.0028 30.7 6.4 52 288-342 69-121 (367)
85 PF14377 DUF4414: Domain of un 30.2 1.3E+02 0.0028 24.6 5.2 48 218-265 8-68 (108)
86 PRK11171 hypothetical protein; 29.9 1.2E+02 0.0027 29.2 5.9 49 287-342 185-234 (266)
87 TIGR02451 anti_sig_ChrR anti-s 29.8 1.4E+02 0.0029 27.9 6.0 70 287-381 128-199 (215)
88 TIGR00934 2a38euk potassium up 28.2 3.8E+02 0.0082 30.3 9.7 48 140-188 491-545 (800)
89 KOG2301 Voltage-gated Ca2+ cha 28.1 5.7E+02 0.012 31.6 11.8 8 440-447 944-951 (1592)
90 PF13623 SurA_N_2: SurA N-term 26.9 1.5E+02 0.0034 25.7 5.4 46 171-216 9-67 (145)
91 PF01484 Col_cuticle_N: Nemato 26.8 2.1E+02 0.0046 19.5 6.9 41 169-209 8-48 (53)
92 PHA01757 hypothetical protein 25.2 3.2E+02 0.0069 21.0 6.5 46 164-210 4-49 (98)
93 COG3837 Uncharacterized conser 25.0 1.1E+02 0.0025 26.8 4.1 35 304-345 62-96 (161)
94 COG4325 Predicted membrane pro 25.0 4.7E+02 0.01 26.7 8.8 58 137-196 129-191 (464)
95 PF11699 CENP-C_C: Mif2/CENP-C 24.6 98 0.0021 24.2 3.3 28 307-341 34-61 (85)
96 KOG2675 Adenylate cyclase-asso 24.6 61 0.0013 33.2 2.7 20 477-496 229-248 (480)
97 KOG0500 Cyclic nucleotide-gate 24.5 8.6E+02 0.019 25.8 12.7 73 249-326 260-358 (536)
98 PRK11171 hypothetical protein; 24.3 1.5E+02 0.0033 28.6 5.4 46 289-341 64-111 (266)
99 PF08566 Pam17: Mitochondrial 23.9 5.3E+02 0.012 23.1 8.8 57 165-221 73-132 (173)
100 PF00190 Cupin_1: Cupin; Inte 23.2 1.5E+02 0.0032 25.4 4.7 53 289-342 37-95 (144)
101 KOG2301 Voltage-gated Ca2+ cha 22.9 5.3E+02 0.011 31.8 10.3 33 150-182 1060-1092(1592)
102 COG3450 Predicted enzyme of th 22.4 2.5E+02 0.0054 23.4 5.5 41 293-341 52-92 (116)
103 PF14841 FliG_M: FliG middle d 22.2 1.6E+02 0.0034 22.5 4.1 40 244-291 30-69 (79)
104 PRK09108 type III secretion sy 21.8 3.2E+02 0.007 27.6 7.3 68 162-229 174-241 (353)
105 KOG4484 Uncharacterized conser 20.6 2.8E+02 0.0061 24.6 5.6 37 196-232 22-58 (199)
106 PRK09943 DNA-binding transcrip 20.5 1.6E+02 0.0035 26.4 4.6 30 305-341 127-156 (185)
107 PF06249 EutQ: Ethanolamine ut 20.5 1.3E+02 0.0029 26.3 3.7 50 306-376 95-144 (152)
108 PF07077 DUF1345: Protein of u 20.1 2.1E+02 0.0046 25.9 5.1 48 140-187 132-179 (180)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-80 Score=652.32 Aligned_cols=447 Identities=55% Similarity=0.904 Sum_probs=395.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccCCCC
Q 010787 10 KNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNG 89 (501)
Q Consensus 10 ~~~l~~~~~~~~l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~ 89 (501)
...|..+++++|||||+|++++++.+++..+++.+++|++++++|++|++++||+||+||++|++++++||.+.
T Consensus 194 ~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------ 267 (727)
T KOG0498|consen 194 STILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------
Confidence 34799999999999999999999999999999999999998899999999999999999999999999998552
Q ss_pred cccccCCCCCCCccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccccCchhhHH
Q 010787 90 CKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEIC 169 (501)
Q Consensus 90 c~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~ 169 (501)
+|+...+...+.++..|+||+|. ++.+|++|+||+++||||+||||++|+|..|++
T Consensus 268 ------------tw~~~l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~i 323 (727)
T KOG0498|consen 268 ------------TWLGSLGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKI 323 (727)
T ss_pred ------------ccccccccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHH
Confidence 57665321112233447788764 566999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 010787 170 FAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCN 249 (501)
Q Consensus 170 ~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~ 249 (501)
|+|++|++|.++||++||||+++++..+.+.++|+.+++++++||++++||++||+||++|++|+|..++|+|++++|++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~ 403 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQS 403 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeee
Q 010787 250 LPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF 329 (501)
Q Consensus 250 Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~ 329 (501)
||++||++|++|+|.++++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...++|.+
T Consensus 404 LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~-- 481 (727)
T KOG0498|consen 404 LPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF-- 481 (727)
T ss_pred CCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887743
Q ss_pred eeeeEeCCCCeechhhhhhhcC-CCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 010787 330 FNSEYLGAGDFCGEELLTWALD-PQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWR 408 (501)
Q Consensus 330 ~~~~~l~~G~~fGe~~l~~~~~-~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~ 408 (501)
.++..+++||+|||.-+.|+.+ |+ ++||+|++.|+++.|++++|.+++++||+++++.+++++++|+++|+
T Consensus 482 ~~~~~L~~Gd~~GeEl~~~~~~~p~--------t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r 553 (727)
T KOG0498|consen 482 FVVAILGPGDFFGEELLTWCLDLPQ--------TRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWR 553 (727)
T ss_pred EEEEEecCCCccchHHHHHHhcCCC--------CceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhh
Confidence 3479999999999766667663 32 89999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHHHHhhcCCCCCCcchhhhhhHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 010787 409 SWAACFIQAAWRRYSKKKLEESLRAEENRLQDALAKAGGSSPSLGATIYASRFAANALRLIRRNSTRKTRVPERVPPMLL 488 (501)
Q Consensus 409 ~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~~~~~~~~~~~~~~~~~~As~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (501)
+|+++.+|.+|+++.+|+....+...++. ...-...++..+.+.....|++++++..+.++... .+.++....+.+
T Consensus 554 ~~aa~~iq~a~r~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 629 (727)
T KOG0498|consen 554 TWAACFIQAAWRRHIKRKGEEELALEEEE-SAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAA---SRGSSDCALLLL 629 (727)
T ss_pred hhhhhhHHHHHHHHHHhhccchhhhhcch-hhhccccccchhhhhcccccccccccCCCcccccc---ccCccccccccC
Confidence 99999999999999998877655553221 11112555666778888899999999888776542 233344445777
Q ss_pred CCCCCCCCCCCC
Q 010787 489 QKPAEPDFTVEE 500 (501)
Q Consensus 489 ~~p~~~~~~~~~ 500 (501)
|||.+|||+.++
T Consensus 630 ~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 630 QKPADPDFSDAE 641 (727)
T ss_pred CCCCCCCccccc
Confidence 999999999764
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-55 Score=429.17 Aligned_cols=345 Identities=25% Similarity=0.408 Sum_probs=294.7
Q ss_pred cccchhHHHHHHH---HHHHHHHHHHhhhhHHHhhhhccchhhhHHHH--HHHHHHHHHH-HHHHHHHHHHhhhhcchhh
Q 010787 6 VVNTKNLLKFVVL---FQYVPRFLRIYPLYKEVTRTSGILTETAWAGA--AFNLFLYMLA-SHVLGASWYLFSIERETTC 79 (501)
Q Consensus 6 ~~~~~~~l~~~~~---~~~l~Rllr~~rl~~~~~~~~~~~~~~~~~~~--~~~l~~~~l~-~H~~aC~w~~i~~~~~~~~ 79 (501)
++.|.+.|.+... +.+++||+|++|++..+.+.+. .|.+..+ +.+|+.++++ +||.||+||+|+..
T Consensus 83 ~liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTet---rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~----- 154 (536)
T KOG0500|consen 83 SLIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTET---RTTYPNAFRISKLVHYCLILFHWNACLYFLISKA----- 154 (536)
T ss_pred hhcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHh-----
Confidence 4566676666553 3347999999999999998763 4445544 6777777654 89999999999943
Q ss_pred hhccccCCCCcccccCCCCCCCccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCc
Q 010787 80 WKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNL 159 (501)
Q Consensus 80 w~~~c~~~~~c~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGd 159 (501)
.+.+.++|.+.. -.+..|+. .....+..+|+.|+||+..||||+| -.
T Consensus 155 ----------------~g~~~d~wvY~~-------i~d~~~~~---------c~~~n~~ReY~~S~YWStLTlTTiG-e~ 201 (536)
T KOG0500|consen 155 ----------------IGFTTDDWVYPK-------INDPEFAT---------CDAGNLTREYLYSLYWSTLTLTTIG-EQ 201 (536)
T ss_pred ----------------cCccccccccCC-------ccCccccc---------cchhHHHHHHHHHHHHHhhhhhhcc-CC
Confidence 134567798742 11111110 0123488999999999999999999 47
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 010787 160 ETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETR 239 (501)
Q Consensus 160 i~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~ 239 (501)
..|.+..|.+|.|+=.++|+++||.|+|++++++.+++....+|+.+|+.+++||+.|++|+.+|.||.+||.|.|.+++
T Consensus 202 P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~ 281 (536)
T KOG0500|consen 202 PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKK 281 (536)
T ss_pred CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEE
Q 010787 240 GVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLT 319 (501)
Q Consensus 240 ~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~ 319 (501)
..||+++++.||+.|+.+|+.+++.+.|+++++|+++++.++.+++.+++++.|.|||+|+++||.+.+||+|.+|++++
T Consensus 282 ~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~V 361 (536)
T KOG0500|consen 282 IVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAV 361 (536)
T ss_pred cccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHH
Q 010787 320 ITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRH 398 (501)
Q Consensus 320 ~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~ 398 (501)
..++++.. ...+++|++|||+++++ +.++ .+-.+|++++++++.+++++|+++|+-+.+++||+-+..++++
T Consensus 362 v~dDg~t~----~~~L~~G~~FGEisIln-i~g~--~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 362 VADDGVTV----FVTLKAGSVFGEISILN-IKGN--KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred EecCCcEE----EEEecCCceeeeeEEEE-EcCc--ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 98777654 47999999999999863 4442 2334689999999999999999999999999999966555533
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.9e-52 Score=465.64 Aligned_cols=327 Identities=20% Similarity=0.332 Sum_probs=279.6
Q ss_pred HHHHHHHhhhhHHHhhhhccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcchhhhhccccCCCCcccccCCCCCC
Q 010787 22 VPRFLRIYPLYKEVTRTSGILTETAWAGAAFNL-FLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGN 100 (501)
Q Consensus 22 l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~c~~~~~~~~~~ 100 (501)
++|++|+.|+.+.+.+.+..+........+.++ +..++++||+||+||+++... ...+
T Consensus 173 llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~---------------------~~~~ 231 (823)
T PLN03192 173 LLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY---------------------PHQG 231 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------CCCC
Confidence 556666666666665554433322222233444 444456999999999998321 1224
Q ss_pred CccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHH
Q 010787 101 NAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLV 180 (501)
Q Consensus 101 ~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~ 180 (501)
.+|+..... + ..+.+++.+|++|+||+++|||||||||++|.|..|++|++++|++|++
T Consensus 232 ~~Wi~~~~~-------~--------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~ 290 (823)
T PLN03192 232 KTWIGAVIP-------N--------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLG 290 (823)
T ss_pred CchHHHhhh-------c--------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHH
Confidence 689863111 0 1456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHH
Q 010787 181 LFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKR 260 (501)
Q Consensus 181 ~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~ 260 (501)
+|||++|+|++++.+.+.+..+|+++++.+++||+++++|++||+||++|+++.|+. .+.+++++++.||++||.++..
T Consensus 291 ~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~ 369 (823)
T PLN03192 291 LTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQ 369 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 4578899999999999999999
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCe
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDF 340 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~ 340 (501)
+++.+.++++++|++++++++.+|+..++.+.|+|||.|+.+||.++++|||.+|.|+++..+++++.+ +..+++|++
T Consensus 370 ~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~ 447 (823)
T PLN03192 370 HLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGCGDI 447 (823)
T ss_pred HHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEccCCCE
Confidence 999999999999999999999999999999999999999999999999999999999998777676665 589999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010787 341 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRF 402 (501)
Q Consensus 341 fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~ 402 (501)
|||.+++ ...| ++++++|.++|+++.|++++|.++++++|++...++++..++
T Consensus 448 FGE~~~l---~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~ 500 (823)
T PLN03192 448 FGEVGAL---CCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQH 500 (823)
T ss_pred ecchHHh---cCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999985 3333 389999999999999999999999999999988888887764
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-49 Score=387.20 Aligned_cols=368 Identities=21% Similarity=0.323 Sum_probs=306.7
Q ss_pred HHHHHHHhhhhHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccCCCCcccccCCCCCCC
Q 010787 22 VPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNN 101 (501)
Q Consensus 22 l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~ 101 (501)
+.||||+-|+.++++.+.++ .-+..++.++.|++++||+||+||.||..+.-+ .-.+....+
T Consensus 329 VVRLLRLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~--------------~~~n~i~~d 390 (971)
T KOG0501|consen 329 VVRLLRLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD--------------EMDNTIQPD 390 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchheec--------------ccccccccc
Confidence 78999999999999987653 234456667889999999999999999432110 001124567
Q ss_pred ccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHH
Q 010787 102 AFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVL 181 (501)
Q Consensus 102 ~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~ 181 (501)
+|+..... +-+.+|+|.. .-....+..++--..|+.|+||.++.|||||+|.|.|.|..|++|++++|++|.++
T Consensus 391 sWL~kLa~---~~~tpY~~~~---s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLL 464 (971)
T KOG0501|consen 391 SWLWKLAN---DIGTPYNYNL---SNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALL 464 (971)
T ss_pred hHHHHHHh---hcCCCceecc---CCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHH
Confidence 89876432 1334444431 00111234566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHH
Q 010787 182 FSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRH 261 (501)
Q Consensus 182 fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~ 261 (501)
||-|+|+++.|++++.+....|.+.++++.+||+-..+|+.|.+||.+|.-..|.+++|+|.+++|.-.|.++|.+|+.|
T Consensus 465 YAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVH 544 (971)
T KOG0501|consen 465 YATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVH 544 (971)
T ss_pred HHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 262 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 262 ~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
++.+.++.+|.|+-.++.++++|+..++..+..|||.|++.||..|.+.||++|.+++..+++ ++++++.||+|
T Consensus 545 LNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVF 618 (971)
T KOG0501|consen 545 LNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVF 618 (971)
T ss_pred cchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccc
Confidence 999999999999999999999999999999999999999999999999999999999987665 36999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 010787 342 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRR 421 (501)
Q Consensus 342 Ge~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~ 421 (501)
|+... -+.. +..+.++++|++.|.+..|.++.+.++++-|..+....-++.. +.-++..|
T Consensus 619 GD~FW---K~~t----~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~-------------LTyNLr~R 678 (971)
T KOG0501|consen 619 GDEFW---KENT----LGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT-------------LTYNLRHR 678 (971)
T ss_pred hhHHh---hhhh----hhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee-------------eEeeccce
Confidence 99754 2211 2235889999999999999999999999888776553322221 23345567
Q ss_pred HHHhHhHHHHHHHHhHhH
Q 010787 422 YSKKKLEESLRAEENRLQ 439 (501)
Q Consensus 422 ~~~r~~~~~l~~aeery~ 439 (501)
+..|++++..++.|+|.+
T Consensus 679 iiFRKvaDVKrEkE~~~k 696 (971)
T KOG0501|consen 679 IIFRKVADVKREKELRAK 696 (971)
T ss_pred eeeeehhhhhhhHHHHHh
Confidence 888999999988887754
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-48 Score=384.21 Aligned_cols=324 Identities=24% Similarity=0.401 Sum_probs=281.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhh---hHHHhhhhccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcchhhhh
Q 010787 6 VVNTKNLLKFVVLFQYVPRFLRIYPL---YKEVTRTSGILTETAWAGAAFNLFLYML-ASHVLGASWYLFSIERETTCWK 81 (501)
Q Consensus 6 ~~~~~~~l~~~~~~~~l~Rllr~~rl---~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~H~~aC~w~~i~~~~~~~~w~ 81 (501)
++.|.+++++.++.+-+.|+=|++++ +......+.++. .+++..+...+.||+ ++|+.||+||+.+-..
T Consensus 316 siLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s-~~y~~RV~rT~~YmlyilHinacvYY~~Sayq------ 388 (815)
T KOG0499|consen 316 SILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMS-KAYIYRVIRTTGYLLYILHINACVYYWASAYQ------ 388 (815)
T ss_pred hhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc------
Confidence 56788888888877654444444444 444444444444 345555555556654 5899999999988320
Q ss_pred ccccCCCCcccccCCCCCCCccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccc
Q 010787 82 GHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLET 161 (501)
Q Consensus 82 ~~c~~~~~c~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~ 161 (501)
+.+.+.|+.+. -...|++|+|||+.|++|+| |...
T Consensus 389 ---------------glG~~rWVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~ 423 (815)
T KOG0499|consen 389 ---------------GLGTTRWVYDG-----------------------------EGNEYIRCYYFAVKTLITIG-GLPE 423 (815)
T ss_pred ---------------ccccceeEEcC-----------------------------CCCceeeehhhHHHHHHHhc-CCCC
Confidence 24468898631 23459999999999999999 8999
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCC
Q 010787 162 STYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGV 241 (501)
Q Consensus 162 p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~ 241 (501)
|.|..|++|..+-.++|+++||.+||.|-.++...+..+++|+..|++.-.||++.+||+++|+||+.||+|.|..++..
T Consensus 424 P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~L 503 (815)
T KOG0499|consen 424 PQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRML 503 (815)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE
Q 010787 242 DEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT 321 (501)
Q Consensus 242 ~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~ 321 (501)
||.+++..||..||.+++..++-..+.++.+|++|+.+.+..++.+++.+.|.|||+|+++||++.+||+|..|.|.+..
T Consensus 504 DEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG 583 (815)
T KOG0499|consen 504 DESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG 583 (815)
T ss_pred cHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHH
Q 010787 322 TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRR 390 (501)
Q Consensus 322 ~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 390 (501)
..+|... +..+.+|++|||++++- ..+.. +|+++|+|.+.|.+++|+++|+.+++..||+
T Consensus 584 Gp~~~~V---l~tL~~GsVFGEISLLa-igG~n-----RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 584 GPDGTKV---LVTLKAGSVFGEISLLA-IGGGN-----RRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred CCCCCEE---EEEecccceeeeeeeee-ecCCC-----ccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 7666653 58999999999999852 33332 4899999999999999999999999999997
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=7.7e-16 Score=147.25 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=125.0
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
.++++.+++|..++++.+..+....+.+.|++|++|+++|+.++.+|+|.+|.|+++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999998766666665 589999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 010787 344 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYS 423 (501)
Q Consensus 344 ~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~ 423 (501)
.++ ++..+ +.++++|.++|+++.|++++|.+++.++|.+....++...+. ..+..
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~----------------~~~~~ 138 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGC----------------YRGLV 138 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHH
Confidence 987 44443 388999999999999999999999999999876555444332 22233
Q ss_pred HhHhHHHHHHHHhHhHHHHh
Q 010787 424 KKKLEESLRAEENRLQDALA 443 (501)
Q Consensus 424 ~r~~~~~l~~aeery~~~~~ 443 (501)
++.......++++|+..++.
T Consensus 139 ~~~~~~~~~~~~~Rla~~Ll 158 (236)
T PRK09392 139 KSLKNQKLRSSAERLANYLL 158 (236)
T ss_pred HHHHHhhcCCHHHHHHHHHH
Confidence 44444455667777777664
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.62 E-value=1.9e-14 Score=135.10 Aligned_cols=162 Identities=16% Similarity=0.203 Sum_probs=121.6
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCC
Q 010787 274 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDP 352 (501)
Q Consensus 274 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~ 352 (501)
+.++++.++.++..++.+.|++|++|+.+|++++.+|||.+|.++++.. .+|++.+ +..+++|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 4689999999999999999999999999999999999999999999854 4577766 5899999999999884 32
Q ss_pred CCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHH
Q 010787 353 QSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLR 432 (501)
Q Consensus 353 ~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~ 432 (501)
.+ .+.++++|.++|+++.|++++|.+++.++|++....++...+ .. ....++.....+.
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~---------------~l-~~~~~~~~~~~~~ 139 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR---------------RL-QNTSRKVGDLAFL 139 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH---------------HH-HHHHHHHHHHHhc
Confidence 21 137899999999999999999999999999976544433322 11 1233344445566
Q ss_pred HHHhHhHHHHh---hc------CC-CCCCcchhhhhhHH
Q 010787 433 AEENRLQDALA---KA------GG-SSPSLGATIYASRF 461 (501)
Q Consensus 433 ~aeery~~~~~---~~------~~-~~~~~~~~~~As~~ 461 (501)
++++|+..++. +. |+ ...+++.+.+|+..
T Consensus 140 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 178 (211)
T PRK11753 140 DVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIV 178 (211)
T ss_pred ChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHh
Confidence 77777765432 11 21 23467777777765
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.58 E-value=6.4e-14 Score=133.87 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=100.6
Q ss_pred hccccccccCcHHHHHHHHhhcce-eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechh
Q 010787 267 LMRVPLFEKMDEQLLDALCDRLKP-VLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEE 344 (501)
Q Consensus 267 l~~i~~F~~l~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~ 344 (501)
+++.+.|..+++++++.|...... ..|++|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 445555557999999999988864 68999999999999999999999999999865 5677766 4888999999987
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010787 345 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 400 (501)
Q Consensus 345 ~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~ 400 (501)
.+ .... +..+++|.++|+++.|++++|.+++.++|++....++...
T Consensus 93 ~~---~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~ 138 (235)
T PRK11161 93 AI---GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS 138 (235)
T ss_pred cc---cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH
Confidence 65 2222 2568999999999999999999999999998765555443
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.52 E-value=2.6e-13 Score=128.85 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=91.5
Q ss_pred HHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCC
Q 010787 281 LDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLP 359 (501)
Q Consensus 281 l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~ 359 (501)
..+|....+.+.|++|++|+.+||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||+.++ ++..+
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~---~~~~~----- 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIEL---IDKDH----- 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehh---hcCCC-----
Confidence 34677888999999999999999999999999999999985 45677766 489999999999986 34333
Q ss_pred CcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 360 ISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 360 ~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
++++++|.++|+++.+++++|.+++.++|.+....++..
T Consensus 94 -~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 94 -ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred -CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 388999999999999999999999999998766444433
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.49 E-value=3.8e-13 Score=112.23 Aligned_cols=111 Identities=30% Similarity=0.541 Sum_probs=97.2
Q ss_pred ccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhc
Q 010787 272 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWAL 350 (501)
Q Consensus 272 ~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~ 350 (501)
+|..++++.+..++..++.+.+.+|+.|+.+|++.+.+|+|.+|.++++.. .+|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 478899999999999999999999999999999999999999999999754 4455555 5899999999999874
Q ss_pred CCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 351 DPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 351 ~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
...+ +..+++|.++|+++.|+.++|.++++++|++..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 3332 388999999999999999999999999998654
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.45 E-value=3.7e-12 Score=119.16 Aligned_cols=123 Identities=25% Similarity=0.375 Sum_probs=102.0
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhh
Q 010787 268 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELL 346 (501)
Q Consensus 268 ~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l 346 (501)
...+.|...+.+....+......+.+++|++|+++||+++.+|+|.+|.++++.. .+|++.+ +.++++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 3456666677777788779999999999999999999999999999999999854 4577766 489999999999998
Q ss_pred hhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 010787 347 TWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 401 (501)
Q Consensus 347 ~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~ 401 (501)
+ ...+ +.++++|+++|+++.+++++|.+++.+.|.+...++....+
T Consensus 81 ~---~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 81 L---GGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred h---cCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 5 3222 38999999999999999999999988778776655555443
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.44 E-value=7.7e-13 Score=106.11 Aligned_cols=89 Identities=30% Similarity=0.428 Sum_probs=77.5
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCC-ceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 010787 291 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG-GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 369 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~-g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~ 369 (501)
+.|++|++|+++|++.+.+|||++|.++++..+. ++..+ +..+.+|++||+..++. ..+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~---~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLT---GKP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHH---TSB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecC---CCc------cEEEEEEcc
Confidence 6899999999999999999999999999986654 44443 58999999999999862 222 389999999
Q ss_pred cceeeEecHHHHHHHHHHhHH
Q 010787 370 EVEAFALMADDLKFVASQFRR 390 (501)
Q Consensus 370 ~~~l~~i~~~~f~~l~~~~p~ 390 (501)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999995
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.43 E-value=3.9e-12 Score=106.70 Aligned_cols=113 Identities=28% Similarity=0.413 Sum_probs=96.8
Q ss_pred ccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhc
Q 010787 272 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWAL 350 (501)
Q Consensus 272 ~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~ 350 (501)
+|.+++++.+..++..++.+.+++|++|+++|++.+.+|||.+|.++++.. .+|++.. +..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~-~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALLT-N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhcc-C
Confidence 478899999999999999999999999999999999999999999999865 4455544 58999999999999841 1
Q ss_pred CCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 351 DPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 351 ~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
.+.+ +..+++|.++|+++.++.+++...+..+|.+..
T Consensus 78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 114 (120)
T smart00100 78 SRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLL 114 (120)
T ss_pred CCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHH
Confidence 2222 378999999999999999999999999987544
No 14
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.42 E-value=2.6e-12 Score=122.32 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=112.2
Q ss_pred HHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCC
Q 010787 282 DALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPI 360 (501)
Q Consensus 282 ~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~ 360 (501)
..+....+.+.|++|++|+.+||+++.+|||.+|.|+++. ..+|++.+ +..+.+|++||+.. ..+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~~~-------- 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----GST-------- 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----CCc--------
Confidence 3456677889999999999999999999999999999985 45677665 48899999999532 111
Q ss_pred cceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHH
Q 010787 361 STRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQD 440 (501)
Q Consensus 361 r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~ 440 (501)
+.++++|+++|+++.|++++|.+++.++|++....++...+... ...++.......++++|+..
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~----------------~~~~~~~~l~~~~~~~Rla~ 161 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR----------------HAQDHMLLLGRKTAMERVAA 161 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH----------------HHHHHHHHHcCCCHHHHHHH
Confidence 37899999999999999999999999999987766655543222 12233333344556666665
Q ss_pred HHhhc-------CCCCCCcchhhhhhHH------HHHHHHHHhh
Q 010787 441 ALAKA-------GGSSPSLGATIYASRF------AANALRLIRR 471 (501)
Q Consensus 441 ~~~~~-------~~~~~~~~~~~~As~~------~~~~~~~~~~ 471 (501)
++.+. +.....+++..+|+.. ++++++.+.+
T Consensus 162 ~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~ 205 (230)
T PRK09391 162 FLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQD 205 (230)
T ss_pred HHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54331 1112334556666554 3555555543
No 15
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.35 E-value=1.9e-11 Score=113.95 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=99.0
Q ss_pred hcceeeeCCCCEEEccCC--CCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcce
Q 010787 287 RLKPVLYTEESYIVREGD--PVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTR 363 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~ 363 (501)
.++.+.|++|++|+++|| +++.+|+|.+|.|+++. ..+|++.+ +..+.+||+||+..+ .. .+ +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~---~~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL---AG-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh---cC-CC------CCc
Confidence 457789999999999999 77999999999999985 45678777 489999999999765 22 22 378
Q ss_pred EEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHHHHh
Q 010787 364 TVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQDALA 443 (501)
Q Consensus 364 tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~~~~ 443 (501)
+++|+++|+++.|++++| +|++...+++...+......+ .+..........|....+++.++. +.....
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~----~~~~l~~~~~~~Rla~~Ll~l~~~-~~~~~~ 141 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYE----SIYRLVGQRLKNRIAAALLELSDT-PLATQE 141 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHH----HHHHHHhCchHHHHHHHHHHHHHH-hCCCCC
Confidence 899999999999999987 455555555555433332111 122222333444444444444432 111112
Q ss_pred hcCCCCCCcchhhhhhHH
Q 010787 444 KAGGSSPSLGATIYASRF 461 (501)
Q Consensus 444 ~~~~~~~~~~~~~~As~~ 461 (501)
..+.....+++..+|+-.
T Consensus 142 ~~~~~~~~~t~~~iA~~l 159 (202)
T PRK13918 142 DSGETMIYATHDELAAAV 159 (202)
T ss_pred CCCeEEecCCHHHHHHHh
Confidence 223334456676776654
No 16
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.34 E-value=1.6e-11 Score=113.50 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceee
Q 010787 296 ESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAF 374 (501)
Q Consensus 296 ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~ 374 (501)
|+.|+++||+++.+|+|.+|.|+++. ..+|++.+ +..+++|++||+.+++ .+.+. .+.++++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~~----~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHRS----DRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCCC----ccceEEEEecceEEE
Confidence 78999999999999999999999985 45677766 5999999999998874 33211 125789999999999
Q ss_pred EecHHHHHHHHHHhHHHHHHHHHHHHH
Q 010787 375 ALMADDLKFVASQFRRLHSKQLRHTFR 401 (501)
Q Consensus 375 ~i~~~~f~~l~~~~p~~~~~~l~~~~~ 401 (501)
.|++++|.+++.++|.+....++....
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999988766665543
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=3e-12 Score=127.79 Aligned_cols=131 Identities=26% Similarity=0.428 Sum_probs=112.1
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCe
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDF 340 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~ 340 (501)
+.+.++|+.+|+|++++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+++.+....+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 45678999999999999999999999999999999999999999999999999999999876665333334799999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEccc-ceeeEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010787 341 CGEELLTWALDPQSSSNLPISTRTVRALTE-VEAFALMADDLKFVASQFRRLHSKQLRHTF 400 (501)
Q Consensus 341 fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~-~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~ 400 (501)
|||-+++ ... .|++++.|.++ ++++.|+++.|..++-...++..+...+..
T Consensus 348 FGE~al~---~ed------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~ 399 (732)
T KOG0614|consen 348 FGERALL---GED------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEE 399 (732)
T ss_pred hhHHHhh---ccC------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchh
Confidence 9999985 332 25899999998 999999999999999888877754444443
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=2.8e-11 Score=122.62 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=103.5
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
.+++.++|.|..++++.+.+|...+....|.+||+|+..|.+.+.+|+|.+|.|+++..++. .+..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 57889999999999999999999999999999999999999999999999999999876543 2589999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 344 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 344 ~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
.+++ +..+. ...+.|.++|.+|.|+++.|.+++.++|+++.
T Consensus 81 ~~l~---~~~~~------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLF---TELNK------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhc---ccCCC------cceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 9985 33322 56788888999999999999999999999776
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.26 E-value=4.1e-11 Score=93.78 Aligned_cols=55 Identities=13% Similarity=0.338 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 194 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~ 194 (501)
.|..|+||+++|+||+||||+.|.+...++++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3888999999999999999999999999999999999999999999999998875
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.23 E-value=8.7e-11 Score=121.47 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=97.5
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
.++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+.+.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999998654332433 588999999997
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHH
Q 010787 344 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRR 390 (501)
Q Consensus 344 ~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 390 (501)
. + . ..+ +..+++|.++|+++.|+++.|..+....+-
T Consensus 85 ~-l---~-~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 85 G-L---S-GSV------HSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred h-h---C-CCC------cccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 5 3 2 222 489999999999999999999988766553
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.22 E-value=3.9e-11 Score=119.91 Aligned_cols=131 Identities=24% Similarity=0.358 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeC
Q 010787 257 DIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLG 336 (501)
Q Consensus 257 ~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~ 336 (501)
.=..++..+.+.+..|+++++...+.+++..|.+..|.+|..|++|||+++.+|++..|++.+... |+ .++..+
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce----eeeccC
Confidence 344566778888999999999999999999999999999999999999999999999999999863 33 268999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010787 337 AGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRF 402 (501)
Q Consensus 337 ~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~ 402 (501)
+|.+|||.+++++.. |+++|+|+++|.++.|+++.|+.++..--.-+.....+.+++
T Consensus 220 ~gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrs 276 (732)
T KOG0614|consen 220 AGTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRS 276 (732)
T ss_pred CchhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999975432 599999999999999999999999987665454444444443
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=3.5e-11 Score=115.24 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=104.9
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
.+.+++.-+|.+++++.+.++...|.++.++.|+.|++||+.++.+|+|.+|.+.++..+ + .+..+++|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~--~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG--T----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC--e----EEeeeCCCCchhh
Confidence 567788889999999999999999999999999999999999999999999999999752 2 2689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010787 344 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 400 (501)
Q Consensus 344 ~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~ 400 (501)
.++++ ..| |.+|+.|.+++.+|.|++..|..++-..-....+++...+
T Consensus 195 lALmy---n~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l 242 (368)
T KOG1113|consen 195 LALMY---NPP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFL 242 (368)
T ss_pred hHhhh---CCC------cccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhh
Confidence 99963 222 4999999999999999999999888766655555555544
No 23
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.1e-10 Score=114.98 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=47.6
Q ss_pred HHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 143 YCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 143 ~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
.|+|||++|||||||||++|.|..-++++....+.|+++.|+=|..|.+=+....
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y 434 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYY 434 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHH
Confidence 4799999999999999999999999999999999999999987666555444433
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.1e-10 Score=108.44 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=41.3
Q ss_pred HHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 010787 143 YCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGN 188 (501)
Q Consensus 143 ~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~ 188 (501)
.|||||++|||||||||..|.|.+-+++..++.+.|++-.|.-+..
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPV 441 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPV 441 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccE
Confidence 4799999999999999999999999999999999999887765443
No 25
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.88 E-value=1.5e-08 Score=93.32 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccCCCCcc
Q 010787 12 LLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCK 91 (501)
Q Consensus 12 ~l~~~~~~~~l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~c~ 91 (501)
.+++..+++ +.|++|+.+..+.+++....+. .........+++++++.|++||+++.+.......++..
T Consensus 61 ~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~--------- 129 (200)
T PF00520_consen 61 LLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDP--------- 129 (200)
T ss_dssp CHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------
T ss_pred eEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccccc---------
Confidence 444554443 4466666666655554433222 22222233344555668999999998874433222100
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccccC-----chh
Q 010787 92 LYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETST-----YVW 166 (501)
Q Consensus 92 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~-----~~~ 166 (501)
.+-. ... ....+..+.|..|+||++.++||.|+||+.+. +..
T Consensus 130 ----------~~~~--------~~~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~ 176 (200)
T PF00520_consen 130 ----------TWDS--------END---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWL 176 (200)
T ss_dssp -----------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTT
T ss_pred ----------cccc--------ccc---------------cccccccccccccccccccccccCCccccccccccccchh
Confidence 0000 000 02234667899999999999999999999987 889
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Q 010787 167 EICFA-VFISISGLVLFSFLIGNM 189 (501)
Q Consensus 167 E~~~~-i~~~i~g~~~fa~iig~i 189 (501)
+.++. +++.+++.++++.++|.|
T Consensus 177 ~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 177 AVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99998 666666678899998875
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.83 E-value=3.7e-08 Score=99.45 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 010787 136 YFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMA 215 (501)
Q Consensus 136 ~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~ 215 (501)
+-+.-|..|+||++.|+|||||||.+|.|..-++++.++.++|+.+||.--|.+++=+.-.-+ ++.++ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHHHh
Confidence 356779999999999999999999999999999999999999999999988887766543222 12222 35667
Q ss_pred hcCCChhHHHHHHHHH
Q 010787 216 HRLLPDTLRERIRRYE 231 (501)
Q Consensus 216 ~~~lp~~L~~rv~~y~ 231 (501)
.++.--.|.+-.-+||
T Consensus 338 rr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYY 353 (654)
T ss_pred hcchHHHHHHHHHHHH
Confidence 7777777766665555
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=7.8e-09 Score=99.36 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=102.1
Q ss_pred HHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCC
Q 010787 259 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAG 338 (501)
Q Consensus 259 ~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G 338 (501)
..-+|.++|+.+|++..+.......++..+.++.|.+|+.|+.+|+.++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 4567899999999999999999999999999999999999999999999999999999999755544 2 24 99999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHH
Q 010787 339 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQ 387 (501)
Q Consensus 339 ~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~ 387 (501)
|+|||.+++ ...| |.++|.|.+...+..+++..|+.++.-
T Consensus 309 dyfge~al~---~~~p------r~Atv~a~~~~kc~~~dk~~ferllgp 348 (368)
T KOG1113|consen 309 DYFGELALL---KNLP------RAATVVAKGRLKCAKLDKPRFERLLGP 348 (368)
T ss_pred hhcchHHHH---hhch------hhceeeccCCceeeeeChHHHHHHhhH
Confidence 999999984 4443 389999999999999999999999864
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=4e-08 Score=99.15 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 010787 137 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~ 216 (501)
..-.|..|+|+.++||+||||||+...|...++|.+|+++.|..+||..+..|..++.+.++-.-+++..- =++
T Consensus 285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh------gkk 358 (1103)
T KOG1420|consen 285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH------GKK 358 (1103)
T ss_pred ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc------CCe
Confidence 34569999999999999999999999999999999999999999999999999999987654333332210 000
Q ss_pred c-CCC-hhHHHHHHHHHHHHHHH-hcCCC-HHHHHhhccHHHHHHHHHHHHHHHhcccccccc
Q 010787 217 R-LLP-DTLRERIRRYEQYKWQE-TRGVD-EENLLCNLPKDLRRDIKRHLCLALLMRVPLFEK 275 (501)
Q Consensus 217 ~-~lp-~~L~~rv~~y~~~~~~~-~~~~~-~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~ 275 (501)
+ -+- .-..+.|..|++-.-.+ ...+| |--++...||+|.-| .+++..+.++.+|++
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 0 000 11233344444333222 22334 334578899988655 456666788888875
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.55 E-value=1.3e-06 Score=89.12 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 193 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il 193 (501)
.+..|+||+++|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999887644
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.33 E-value=8e-07 Score=94.52 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=95.5
Q ss_pred HHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCeechhhhhhhcCCCCCCC
Q 010787 279 QLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSN 357 (501)
Q Consensus 279 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~ 357 (501)
.++..+=..+....+.+|+.++++||.+|++|+|..|+++..... +|+..+ +..++.||.+|+.+. +...+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~--- 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP--- 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC---
Confidence 355666667788899999999999999999999999999998553 344334 589999999999998 44443
Q ss_pred CCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 010787 358 LPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFY 403 (501)
Q Consensus 358 ~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~ 403 (501)
|..|+.|+-++++.+|+..-|..+..+||.+..+..+-.++.+
T Consensus 571 ---R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 ---RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ---ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999998887777776655
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=3.1e-05 Score=77.29 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 010787 137 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~ 216 (501)
....|+.|+|....|..++||||++|.|.--+..+++.-++|+++-|.+++.|+.=+ ++..--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 455699999999999999999999999999999999999999999999999887554 344445678999999
Q ss_pred cCCChhHHHHHHHHHHHHHHH
Q 010787 217 RLLPDTLRERIRRYEQYKWQE 237 (501)
Q Consensus 217 ~~lp~~L~~rv~~y~~~~~~~ 237 (501)
.++.+++++-..+-++..|.-
T Consensus 356 tqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888777764
No 32
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.15 E-value=3.3e-07 Score=88.71 Aligned_cols=57 Identities=16% Similarity=0.401 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSF----LIGNMQTYLQST 196 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~----iig~i~~il~~~ 196 (501)
.-=.+||+.++||||.||||.+|.|+..++|..++.+.|+++.|. |+++++.|..+.
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQN 416 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQN 416 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhh
Confidence 344589999999999999999999999999999999999998876 556777777544
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.05 E-value=3.4e-05 Score=76.74 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhhhhccccCCc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 139 KKFFYCFWWGLRNLSSLGQNL--ETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 194 (501)
Q Consensus 139 ~~Yl~slYwa~~t~ttvGyGd--i~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~ 194 (501)
..+..+|+|++.|+||+|||. ++|....-.++.++=+++|+++.|+++|.+-.=++
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358889999999999999998 66777777777888899999999999998775554
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.83 E-value=3.5e-05 Score=80.03 Aligned_cols=59 Identities=10% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
-+..|+||+++++||+|||++.|.|...++++|+..++|+-++..++++++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999999999875543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.82 E-value=0.00013 Score=78.14 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=87.7
Q ss_pred HHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCc
Q 010787 283 ALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPIS 361 (501)
Q Consensus 283 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r 361 (501)
+++.+++...+..||+|++.|++.+.+|.+.+|.+.++.. .+|++.. +....+|+.|.....+ ++.-+....+.+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi--Ld~l~~~ps~~~ 185 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI--LDSLPGFPSLSR 185 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH--HHhccCCCcccc
Confidence 3447888999999999999999999999999999999855 4466655 5899999877766544 333333333456
Q ss_pred ceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHH
Q 010787 362 TRTVRALTEVEAFALMADDLKFVASQFRRLHSKQL 396 (501)
Q Consensus 362 ~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l 396 (501)
+..++|.++|.+..++.+.|.++..+||+-..+++
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~irii 220 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRII 220 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHH
Confidence 88999999999999999999999999998444333
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.50 E-value=0.0036 Score=53.87 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=82.6
Q ss_pred CcHHHHHHHHhh-cceeeeCCCCEEEccC-CCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCC
Q 010787 276 MDEQLLDALCDR-LKPVLYTEESYIVREG-DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 353 (501)
Q Consensus 276 l~~~~l~~l~~~-l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~ 353 (501)
.+......|+.. .+.....+|+.-.-|| .+.|.+-++++|++++...+ +. +..+.|.+|....+..- ..++
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g--~f----LH~I~p~qFlDSPEW~s-~~~s 87 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG--RF----LHYIYPYQFLDSPEWES-LRPS 87 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC--Ee----eEeecccccccChhhhc-cccC
Confidence 577788888877 6778999999999998 56799999999999997643 21 56777777777666531 1111
Q ss_pred CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHH
Q 010787 354 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLH 392 (501)
Q Consensus 354 ~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~ 392 (501)
. -..-..|+.|.++|..+.-+++.+..++.+.|-++
T Consensus 88 ~---~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 88 E---DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred C---CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 1 11348899999999999999999999999998543
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.47 E-value=0.0063 Score=55.90 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=74.0
Q ss_pred HHHHHHhhcceeeeCCCCEE-EccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCC
Q 010787 280 LLDALCDRLKPVLYTEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNL 358 (501)
Q Consensus 280 ~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~ 358 (501)
..+.+....++..+++|..+ +.+....+.++++.+|.|.+. ..++ . .+....+..+||-... ..+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--l--l~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--V--LIGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--e--EEEeccCCeEeecccc---cCCCC----
Confidence 45667777888899999997 544444478999999999995 3333 2 2578888899998765 33332
Q ss_pred CCcceEEEEcccceeeEecHHHHHHHHHHhH
Q 010787 359 PISTRTVRALTEVEAFALMADDLKFVASQFR 389 (501)
Q Consensus 359 ~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 389 (501)
..+..+|.++|+++.++.++|.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 25789999999999999999999998765
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0032 Score=60.57 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhhccccCCccccCch-------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYV-------WE-ICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~-------~E-~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
|+.|+||.+.|+||+|+||.++.-. .+ ..++.+.+++|+.+++-.++.+.-.+..++
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999887422 23 356778888999998888887776665444
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00027 Score=67.73 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=46.5
Q ss_pred hHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 139 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTY 192 (501)
Q Consensus 139 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~i 192 (501)
=+..-|||||++.+||+|||-.+|.|.+-++|+++..++|+-+--..+..+++=
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gER 132 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGER 132 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHH
Confidence 356779999999999999999999999999999999999987766666665543
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.72 E-value=0.0042 Score=64.80 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=89.8
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeee-CCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCC
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLY-TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 339 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~ 339 (501)
+...++..+.|.|.+++-...++||..|....+ .+|.+|...|+.-+..+.|+.|.|++...++.+ ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 445678899999999999999999998887655 689999999999999999999999999988765 4677899
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFR 389 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 389 (501)
.||...- .+.... ...--.-+.+|++.+|...|+-.++..--
T Consensus 351 SFG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHHH
Confidence 9996543 111100 01112456799999999999999886544
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.013 Score=57.76 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhhccccCCcccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETS--TYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p--~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
....+|-|++-|=||+|||-=.+ .-..-.+..++=+++|+++-|+++|.+-.=+..-.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 46778999999999999995433 22233444556678899999999998765554433
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.0028 Score=65.79 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhH--------HHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEI--------CFAVFISISGLVLFSFLIG 187 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~--------~~~i~~~i~g~~~fa~iig 187 (501)
-|+.|+||+++++||+|+||++|.+...+ .+..+..++|...++.+.-
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 48889999999999999999999997755 5777888888888888773
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.31 E-value=1.2 Score=51.20 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 167 EICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 167 E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
-..|..+++++..++.-++|+.|...++....
T Consensus 1396 PIYFfSFILLV~FILLNMFIAII~DSFsEVK~ 1427 (1634)
T PLN03223 1396 MIYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777777777765543
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.27 E-value=0.061 Score=56.51 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
...+.+...|.++-..-+..++...+...++...++|+.|+.++..|++++|.|-+.. ..+-|-.+||-
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------QIYMPYGCFGK 104 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------ceecCcccccc
Confidence 3466788899999999999999999999999999999999999999999999987632 34556566775
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHH
Q 010787 344 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMAD 379 (501)
Q Consensus 344 ~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~ 379 (501)
.. +. .|+.++-.+++++..+++..
T Consensus 105 r~------g~------~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 105 RT------GQ------NRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred cc------cc------ccccceeeecccceeeeecC
Confidence 32 22 14888999999999998653
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=92.61 E-value=0.039 Score=56.53 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVL 181 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~ 181 (501)
-..|+||+++|++||||||..|......++.++++.+..++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 44689999999999999999998877776655544444333
No 46
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.44 E-value=14 Score=40.51 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=52.0
Q ss_pred hccccCCccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhHHHHHHhcCCChhHH
Q 010787 152 LSSLGQNLETSTY------VWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRL-EEMRVKRRDAEQWMAHRLLPDTLR 224 (501)
Q Consensus 152 ~ttvGyGdi~p~~------~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~~~~~m~~~~lp~~L~ 224 (501)
=.|+|+||..... ..-.+|.+++.++.++++-.+|+.|++-........ ++++.+. ...-.|-++.+|+.++
T Consensus 600 ~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r 678 (782)
T KOG3676|consen 600 EFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALR 678 (782)
T ss_pred HHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHH
Confidence 3688999876432 234567777788888888888998888888776655 4444443 3334566788888887
Q ss_pred HHH
Q 010787 225 ERI 227 (501)
Q Consensus 225 ~rv 227 (501)
.+-
T Consensus 679 ~~~ 681 (782)
T KOG3676|consen 679 KRF 681 (782)
T ss_pred HHH
Confidence 763
No 47
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.09 E-value=48 Score=36.78 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred hhccHHHHHHHHHHHHHHH-----hccccccccCcHHHHHHHHhhcce
Q 010787 248 CNLPKDLRRDIKRHLCLAL-----LMRVPLFEKMDEQLLDALCDRLKP 290 (501)
Q Consensus 248 ~~Lp~~Lr~~i~~~~~~~~-----l~~i~~F~~l~~~~l~~l~~~l~~ 290 (501)
..||++||+.+..+...+. +..-.++++++++...+|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 3699999999998876555 445578888999988888877643
No 48
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=84.51 E-value=3.6 Score=36.24 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCCCEE-EccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccce
Q 010787 294 TEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVE 372 (501)
Q Consensus 294 ~~ge~I-~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~ 372 (501)
.||.-. +... ..+++|++++|.+.+-..++|+.. ...+++||+|= -|... ..+-++.++|.
T Consensus 36 Gpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------vP~gv------pHsP~r~~~t~ 97 (159)
T TIGR03037 36 GPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL--------LPPHV------PHSPQRPAGSI 97 (159)
T ss_pred CCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE--------eCCCC------CcccccCCCcE
Confidence 444333 4443 378999999999999766665432 26899999882 22211 34445556777
Q ss_pred eeEecHHH
Q 010787 373 AFALMADD 380 (501)
Q Consensus 373 l~~i~~~~ 380 (501)
+++|.+..
T Consensus 98 ~LvIE~~r 105 (159)
T TIGR03037 98 GLVIERKR 105 (159)
T ss_pred EEEEEeCC
Confidence 77776643
No 49
>COG4709 Predicted membrane protein [Function unknown]
Probab=83.18 E-value=9.2 Score=34.41 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=54.8
Q ss_pred HHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHH--hcCCCHHHHHhhc--cHHHHHHHHHHHHHHHhccccccccCcHHH
Q 010787 205 VKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQE--TRGVDEENLLCNL--PKDLRRDIKRHLCLALLMRVPLFEKMDEQL 280 (501)
Q Consensus 205 ~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~ 280 (501)
+-++++++|++ ++|++.++.+..+|+-.+.. ..|.+|+++..+| |.++-.|+..+.-.+-.+.-|-+++.....
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 34567778885 89999999999988877765 3678899999986 677777777776666666666666655433
No 50
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=79.61 E-value=13 Score=31.55 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=43.6
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 368 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~ 368 (501)
....+.||..+-..-....++++|++|.+.+...++|++ ..+.+||.+- +++. ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~-------~~~~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYA-------LDKH-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEE-------ECCC-------CcEEEEcC
Confidence 345778887553322222479999999999873222332 6899999874 2332 14556666
Q ss_pred ccceeeEe
Q 010787 369 TEVEAFAL 376 (501)
Q Consensus 369 ~~~~l~~i 376 (501)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88887766
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=78.04 E-value=3.4 Score=30.50 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=32.0
Q ss_pred eeeCCCCEEEccCCCCC-eEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 291 VLYTEESYIVREGDPVD-EMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..++||+..-..-.... ++++|++|.+.+.. ++ + ...+.+||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~-~-----~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DG-E-----RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TT-E-----EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-cc-E-----EeEccCCEEE
Confidence 45778886655555555 99999999999883 33 3 2688999866
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=77.52 E-value=17 Score=32.93 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=44.4
Q ss_pred HHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHH--hcCCCHHHHHhhc--cHHHHHHHHHHH
Q 010787 205 VKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQE--TRGVDEENLLCNL--PKDLRRDIKRHL 262 (501)
Q Consensus 205 ~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 262 (501)
+=+++++.+++ ++|++-++++.+||+-.... ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 44567788886 69999999999999887776 4678899999986 777777776554
No 53
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=77.00 E-value=6.2 Score=35.40 Aligned_cols=71 Identities=10% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCCC-EEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccce
Q 010787 294 TEES-YIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVE 372 (501)
Q Consensus 294 ~~ge-~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~ 372 (501)
.||. .-+.- +..++++++++|.+.+...++|+.. ...+.+||+|= -|... ..+-++.++|.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------lP~gv------pHsP~r~~~tv 103 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL--------LPPHV------PHSPQREAGSI 103 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE--------eCCCC------CcCCccCCCeE
Confidence 5553 22333 5678999999999999876666422 26899999882 22211 33445568888
Q ss_pred eeEecHHHHH
Q 010787 373 AFALMADDLK 382 (501)
Q Consensus 373 l~~i~~~~f~ 382 (501)
.++|.+..-.
T Consensus 104 ~LviE~~r~~ 113 (177)
T PRK13264 104 GLVIERKRPE 113 (177)
T ss_pred EEEEEeCCCC
Confidence 8888766543
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=72.06 E-value=6.1 Score=34.00 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 010787 137 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~ 216 (501)
.......++++++.+++.-| ++..|.+...+++.+++.+++.++.+..-+++++++.... ....++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHC
Confidence 45667789999988888734 6789999999999999999999999999999999886433 22334555555544
Q ss_pred c
Q 010787 217 R 217 (501)
Q Consensus 217 ~ 217 (501)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=67.52 E-value=26 Score=24.98 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=23.1
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhHHHHHH
Q 010787 167 EICFAV---FISISGLVLFSFLIGNMQTYLQSTTTR---LEEMRVKRRDAEQWMA 215 (501)
Q Consensus 167 E~~~~i---~~~i~g~~~fa~iig~i~~il~~~~~~---~~~~~~~~~~~~~~m~ 215 (501)
..+|.+ .+.+++.+.|+ +-|-.++.+.+.+ .....+|++.+-+.+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ft---l~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFT---LFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 345555 33333344444 3344455543322 2257788887766653
No 56
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.19 E-value=2.8e+02 Score=31.92 Aligned_cols=33 Identities=12% Similarity=0.474 Sum_probs=17.8
Q ss_pred CchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010787 163 TYVWEICFAV-FISISGLVLFSFLIGNMQTYLQS 195 (501)
Q Consensus 163 ~~~~E~~~~i-~~~i~g~~~fa~iig~i~~il~~ 195 (501)
.|.+-.++.| +..|+..++...++|.+.+-+..
T Consensus 1357 hnpwmllYfIsfllIvsffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1357 HNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 44455555566666766655543
No 57
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=62.96 E-value=12 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=24.1
Q ss_pred CeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 307 DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 307 ~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
+++.+|++|.+.+... +|.. ..+++||.|-
T Consensus 26 ~E~~~vleG~v~it~~-~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDE-DGET-----VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEET-TTEE-----EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEEC-CCCE-----EEEcCCcEEE
Confidence 8899999999998765 4543 6789999873
No 58
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=58.35 E-value=18 Score=29.78 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHHHHHh----------cCCCHHHHHhhccHHHHHHHHHH
Q 010787 218 LLPDTLRERIRRYEQYKWQET----------RGVDEENLLCNLPKDLRRDIKRH 261 (501)
Q Consensus 218 ~lp~~L~~rv~~y~~~~~~~~----------~~~~~~~il~~Lp~~Lr~~i~~~ 261 (501)
-+|.+++..|...+.-.-... ...|...++..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 689999999998876553331 23456789999999999999764
No 59
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=56.86 E-value=3.3e+02 Score=30.60 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 165 VWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 165 ~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
.+-.+|.+++.++.+++.-.+|+.|+..++....
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~ 620 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIAD 620 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3445555566666666666666666666655443
No 60
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=54.92 E-value=28 Score=29.41 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=38.3
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeech
Q 010787 288 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 343 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 343 (501)
+....+.||..+-.--.+ .+...+|++|.+++... |.. ..+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~-----~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK-----KELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc-----eEecCCCEEEE
Confidence 345678888888777666 77999999999998876 332 68999998853
No 61
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=52.75 E-value=70 Score=32.63 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhhhhccccCCcc--ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 138 PKKFFYCFWWGLRNLSSLGQNLE--TSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 138 ~~~Yl~slYwa~~t~ttvGyGdi--~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
.--|+.+|-|++..+.+++-++. .|. .. ..+++++.++++++|-|.|..++..++-.+
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~-~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPR-LS-VFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44689999999999988886655 443 23 778888888899999999999888775433
No 62
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.50 E-value=36 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=34.7
Q ss_pred hcceeeeCCCCEE-EccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 287 RLKPVLYTEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 287 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.+....++||+-+ .+.-...+++|+|++|...+... +++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 4556677888775 44444479999999999998765 332 578888876
No 63
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=51.59 E-value=18 Score=38.29 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=53.2
Q ss_pred HHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCC
Q 010787 142 FYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLL 219 (501)
Q Consensus 142 l~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~l 219 (501)
..|+||++.....-| -||.|.+..-++.+-++.++-+++.+.-.++++..+. .+.+..-++.+++..++..|
T Consensus 597 fNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred hHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 358999999999888 5999999999999999999998888877888887774 12222333444555554444
No 64
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=51.18 E-value=1.4e+02 Score=27.39 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=38.9
Q ss_pred hccHHHHHHHHHHHHHHHhccccccc-cCcHHHHHHHHhhcceee--eCCCCEEEccCCCCC
Q 010787 249 NLPKDLRRDIKRHLCLALLMRVPLFE-KMDEQLLDALCDRLKPVL--YTEESYIVREGDPVD 307 (501)
Q Consensus 249 ~Lp~~Lr~~i~~~~~~~~l~~i~~F~-~l~~~~l~~l~~~l~~~~--~~~ge~I~~~Gd~~~ 307 (501)
.+|+. ...+...+...++.-.-.|. ..++....+......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 45555 34444444444443333332 456677788888999988 999999999999765
No 65
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=50.82 E-value=1.3e+02 Score=26.55 Aligned_cols=57 Identities=21% Similarity=0.104 Sum_probs=33.9
Q ss_pred cCCchhhHHHHHHHHhhhhhccccCCccccCchhh-----HHHHHHHHHHHHHHHHHHHHHH
Q 010787 133 ESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWE-----ICFAVFISISGLVLFSFLIGNM 189 (501)
Q Consensus 133 ~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E-----~~~~i~~~i~g~~~fa~iig~i 189 (501)
.+.........++-.++.++..+--|+--+..... ...+.+..++-.++.++++.++
T Consensus 134 ~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nl 195 (200)
T PF00520_consen 134 ENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNL 195 (200)
T ss_dssp ---SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHH
Confidence 44556677778888888888777667666555554 3455555545555555555443
No 66
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=47.22 E-value=2.2e+02 Score=29.52 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhHHHhhhhcc
Q 010787 22 VPRFLRIYPLYKEVTRTSGI 41 (501)
Q Consensus 22 l~Rllr~~rl~~~~~~~~~~ 41 (501)
..|++|++|..+.+......
T Consensus 308 ~lrll~~l~f~~~~~~~~~t 327 (425)
T PF08016_consen 308 WLRLLKLLRFNRRLSLLSRT 327 (425)
T ss_pred HHHHhhheeecchHHHHHHH
Confidence 56777777776666654443
No 67
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=45.60 E-value=1.8e+02 Score=28.89 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.9
Q ss_pred ccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 153 SSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 193 (501)
Q Consensus 153 ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il 193 (501)
++.++++. ..+..+.+++.+++++.+++...++-.+...-
T Consensus 187 ~~~~~~~~-~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 187 STGSWFNI-RNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred EEcccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444 33677888888888888887777776666543
No 68
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=45.32 E-value=3.4e+02 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHhhccCCC-CCCCCCCCCCCCCCCCCCC
Q 010787 458 ASRFAANALRLIRRNSTRK-TRVPERVPPMLLQKPAEPD 495 (501)
Q Consensus 458 As~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~ 495 (501)
......+++..-.+..+.. .+.|-.+.++|.|+|.||.
T Consensus 378 q~~v~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp~ 416 (442)
T PF06637_consen 378 QLAVKTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDPA 416 (442)
T ss_pred HHHhhhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCChH
Confidence 3344444555543333323 3455555667777777774
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=44.58 E-value=64 Score=27.82 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=35.7
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCC-ceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNG-GRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~-g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||...-..-.. ..++++|++|...+...+. +++.. ...+.+||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 445567788776544332 5789999999999975433 32322 37899999774
No 70
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=44.55 E-value=5.3e+02 Score=29.43 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=29.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHH
Q 010787 217 RLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCL 264 (501)
Q Consensus 217 ~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~ 264 (501)
.++|+.|+.+|..++....- ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 47899999999877654332 23357778888887777766643
No 71
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=43.14 E-value=1.7e+02 Score=23.26 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHHHHHhcCCC
Q 010787 181 LFSFLIGNMQTYLQ---STTTRLEEMRVKRRDAEQWMAHRLLP 220 (501)
Q Consensus 181 ~fa~iig~i~~il~---~~~~~~~~~~~~~~~~~~~m~~~~lp 220 (501)
+-+|.++.++-=+. +......+.++.+++.++.++++++.
T Consensus 48 fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 48 FGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33455555554333 33456667888888889999988874
No 72
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=40.67 E-value=4.7e+02 Score=27.69 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=25.7
Q ss_pred chhhHHHHH-HHHhhhhhccccCCccccCchhhHHHHHHHHHH
Q 010787 136 YFPKKFFYC-FWWGLRNLSSLGQNLETSTYVWEICFAVFISIS 177 (501)
Q Consensus 136 ~~~~~Yl~s-lYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~ 177 (501)
+.|...+.| ++|++.+ |++......+.|..+....
T Consensus 139 elw~~~vvS~lFW~fan-------di~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFAN-------QITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHH
Confidence 366677788 9999864 7777778888888766543
No 73
>PHA03029 hypothetical protein; Provisional
Probab=39.70 E-value=1.6e+02 Score=22.12 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 164 YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEE 202 (501)
Q Consensus 164 ~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~ 202 (501)
+..|.+|-++..++=.++.-.+||.+-..+-+.++-...
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888777777777767777777776665554433
No 74
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=37.97 E-value=1.1e+02 Score=26.76 Aligned_cols=59 Identities=8% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHH
Q 010787 305 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADD 380 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~ 380 (501)
...++++-++|...+-..++|+... ..+.+|++|= +.++ . +.+-+=-.+|.-++|.++.
T Consensus 52 e~eE~FyQ~kG~m~Lkv~e~g~~kd---i~I~EGe~fL-------LP~~-v------pHsP~R~~~tiGLViEr~R 110 (151)
T PF06052_consen 52 ETEEFFYQLKGDMCLKVVEDGKFKD---IPIREGEMFL-------LPAN-V------PHSPQRPADTIGLVIERKR 110 (151)
T ss_dssp SS-EEEEEEES-EEEEEEETTEEEE---EEE-TTEEEE-------E-TT---------EEEEE-TT-EEEEEEE--
T ss_pred CcceEEEEEeCcEEEEEEeCCceEE---EEeCCCcEEe-------cCCC-C------CCCCcCCCCcEEEEEEecc
Confidence 3458999999999987666676654 6899999883 2222 1 3344444677777776653
No 75
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=36.49 E-value=51 Score=25.83 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=42.6
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
......+.||..+-.....+.+..||++|.+.. ++ ..+.+|+++=. .+. +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~-------p~g-------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRL-------PPG-------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE--------TT-------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEe-------CCC-------CccccC
Confidence 345667888888877667778889999999762 22 24578877632 222 366777
Q ss_pred EcccceeeE
Q 010787 367 ALTEVEAFA 375 (501)
Q Consensus 367 A~~~~~l~~ 375 (501)
+.+.|.+++
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 76
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.93 E-value=61 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.205 Sum_probs=19.4
Q ss_pred HhHhHHHHHHhcCCCh-----hHHHHHHHHH
Q 010787 206 KRRDAEQWMAHRLLPD-----TLRERIRRYE 231 (501)
Q Consensus 206 ~~~~~~~~m~~~~lp~-----~L~~rv~~y~ 231 (501)
++.++.++++.+++|. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4567888999998885 5888888774
No 77
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=35.15 E-value=41 Score=24.04 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=15.9
Q ss_pred HHHHhhccHHHHHHHHHHH
Q 010787 244 ENLLCNLPKDLRRDIKRHL 262 (501)
Q Consensus 244 ~~il~~Lp~~Lr~~i~~~~ 262 (501)
-++++.||++|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4688999999999988664
No 78
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=35.08 E-value=74 Score=34.21 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=43.0
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 194 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~ 194 (501)
.-.++||+-..+..-|-|.-+|.+..-+++.+++.=+.+++.|...++++..+-
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 344677777778888888889999999999998888888777777777776664
No 79
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.00 E-value=2.4e+02 Score=31.60 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhccccC
Q 010787 141 FFYCFWWGLRNLSSLGQ 157 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGy 157 (501)
=..+++|++-+++-++-
T Consensus 554 S~~tLFWsiFglv~~~~ 570 (822)
T KOG3609|consen 554 SSKTLFWSIFGLVVLGS 570 (822)
T ss_pred HHHHHHHHHHhcccccc
Confidence 35689999987766553
No 80
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.28 E-value=1.5e+02 Score=33.99 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=16.1
Q ss_pred chhhhhhccccccCCchhhHHHHHHHHhhhhh
Q 010787 121 GIFLGALESGIVESTYFPKKFFYCFWWGLRNL 152 (501)
Q Consensus 121 gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ 152 (501)
||-++.+.+-.-++ +-..+.+.-+||+.-.+
T Consensus 1636 gimkdtlrdc~~e~-~cls~~~sp~yfvsfvl 1666 (1956)
T KOG2302|consen 1636 GIMKDTLRDCTHEE-SCLSQFVSPLYFVSFVL 1666 (1956)
T ss_pred chhhhhHhhcccch-hhhhhhccchhhhhhhh
Confidence 56666665432222 44556666666654443
No 81
>PHA02909 hypothetical protein; Provisional
Probab=32.42 E-value=1e+02 Score=21.69 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 010787 55 FLYMLASHVLGASWYLFSI 73 (501)
Q Consensus 55 ~~~~l~~H~~aC~w~~i~~ 73 (501)
+.|+-+..++||.+.++++
T Consensus 43 iiflsmftilacsyvyiai 61 (72)
T PHA02909 43 IIFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333346889999988884
No 82
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=32.00 E-value=2e+02 Score=26.29 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=32.0
Q ss_pred ceeeeCCCCEE---------EccCCCCCeEEEEEeeEEEEEEeCC-ceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYI---------VREGDPVDEMLFIMRGKLLTITTNG-GRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I---------~~~Gd~~~~lyfI~~G~v~~~~~~~-g~~~~~~~~~l~~G~~f 341 (501)
-...+.||... +++.....++|+|++|...+...+. |... ...+.+|+.+
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~---~~~v~pGd~v 130 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR---WIEMEPGTVV 130 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE---EEEECCCCEE
Confidence 34566777743 2333334599999999999875432 2211 3678999976
No 83
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.67 E-value=1.3e+02 Score=30.67 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred cceeeeCCCCEEEccCC-CCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREGD-PVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||...-.-=. ..+++++|++|.+++... .+|+..+ ..+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~---~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNART---FDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEE---EEECCCCEE
Confidence 45567778876643322 357999999999998743 3344333 579999976
No 84
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.66 E-value=1.3e+02 Score=30.70 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=34.9
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||...----....++.+|++|.+++...+ +|+..+ ..+.+||++-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~---~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYI---DDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEE---eEECCCCEEE
Confidence 344567777765332234568999999999997654 344322 4799999873
No 85
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=30.21 E-value=1.3e+02 Score=24.62 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHHHHHHHh---------cCC---C-HHHHHhhccHHHHHHHHHHHHHH
Q 010787 218 LLPDTLRERIRRYEQYKWQET---------RGV---D-EENLLCNLPKDLRRDIKRHLCLA 265 (501)
Q Consensus 218 ~lp~~L~~rv~~y~~~~~~~~---------~~~---~-~~~il~~Lp~~Lr~~i~~~~~~~ 265 (501)
-||.+++.+|..-....-... ... + ..++|..||+++|.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478888888854332211100 000 1 36899999999999998776544
No 86
>PRK11171 hypothetical protein; Provisional
Probab=29.89 E-value=1.2e+02 Score=29.22 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=37.7
Q ss_pred hcceeeeCCCCEEEc-cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 287 RLKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
.+....++||..+-. ......+.++|++|++.+.. ++++ ..+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~-----~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW-----VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 456678999998876 35667799999999999865 3332 6799999773
No 87
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=29.79 E-value=1.4e+02 Score=27.92 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=49.5
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
......+.||..+-.....+.++.+|++|... .++ ..+.+||+.= .++. ...+.+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~---de~--------g~y~~Gd~i~-------~p~~-------~~H~p~ 182 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS---DET--------GVYGVGDFEE-------ADGS-------VQHQPR 182 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE---cCC--------CccCCCeEEE-------CCCC-------CCcCcc
Confidence 45677889999999888888999999999963 222 4678898763 2222 245566
Q ss_pred Ecc--cceeeEecHHHH
Q 010787 367 ALT--EVEAFALMADDL 381 (501)
Q Consensus 367 A~~--~~~l~~i~~~~f 381 (501)
+.+ +|.++.+.-..+
T Consensus 183 a~~~~~Cicl~v~dapl 199 (215)
T TIGR02451 183 TVSGGDCLCLAVLDAPL 199 (215)
T ss_pred cCCCCCeEEEEEecCCc
Confidence 664 488888765554
No 88
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=28.20 E-value=3.8e+02 Score=30.26 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhccccCCccccCch-------hhHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYV-------WEICFAVFISISGLVLFSFLIGN 188 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~-------~E~~~~i~~~i~g~~~fa~iig~ 188 (501)
....|+|-|++.....|+. ..|.+. .=.+..++.+++|.+.|..++-.
T Consensus 491 ~~W~aiFhAVSAFnNAGFs-L~~dSM~~F~~~~~vllvm~~LIi~GntGFPVllrl 545 (800)
T TIGR00934 491 PTWWGFFTAMSAFANLGLT-LTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRL 545 (800)
T ss_pred HHHHHHHHHHHHHhcCCCC-cCCCcchhhccCccHHHHHHHHHHHcccchHHHHHH
Confidence 3456888899999999984 334322 22233334444455444444433
No 89
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.13 E-value=5.7e+02 Score=31.57 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.4
Q ss_pred HHHhhcCC
Q 010787 440 DALAKAGG 447 (501)
Q Consensus 440 ~~~~~~~~ 447 (501)
..++..|+
T Consensus 944 R~i~r~~~ 951 (1592)
T KOG2301|consen 944 RALSRFPG 951 (1592)
T ss_pred HHHHHccc
Confidence 33444444
No 90
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.93 E-value=1.5e+02 Score=25.68 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhHhHHHHHHh
Q 010787 171 AVFISISGLVLFSFLIGNMQTYLQST-------------TTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 171 ~i~~~i~g~~~fa~iig~i~~il~~~-------------~~~~~~~~~~~~~~~~~m~~ 216 (501)
.+++.++|+.+||++++.+.+.-... .....+|+.+++...+.++.
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 36788999999999998764322111 11456788888888766653
No 91
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=26.82 E-value=2.1e+02 Score=19.51 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010787 169 CFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRD 209 (501)
Q Consensus 169 ~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~ 209 (501)
.++.+..+..++....+.+.+..+-.+....-.++|..-++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666655555554443
No 92
>PHA01757 hypothetical protein
Probab=25.21 E-value=3.2e+02 Score=20.97 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 010787 164 YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDA 210 (501)
Q Consensus 164 ~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~ 210 (501)
+..|..+--|+...|.+.-++++|.+.-+..... +.+.|..-++.+
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~-~nenf~~AvD~m 49 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQ-RNENFAKAIDQM 49 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhHhHHHHHHHH
Confidence 4567777778888999999999999887765433 334455444443
No 93
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=25.04 E-value=1.1e+02 Score=26.81 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhh
Q 010787 304 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEEL 345 (501)
Q Consensus 304 d~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~ 345 (501)
...+++++|++|...+...++ . ..+.+||+.|--+
T Consensus 62 s~edEfv~ILeGE~~l~~d~~-e------~~lrpGD~~gFpA 96 (161)
T COG3837 62 SAEDEFVYILEGEGTLREDGG-E------TRLRPGDSAGFPA 96 (161)
T ss_pred ccCceEEEEEcCceEEEECCe-e------EEecCCceeeccC
Confidence 345799999999998765432 2 6899999987543
No 94
>COG4325 Predicted membrane protein [Function unknown]
Probab=24.96 E-value=4.7e+02 Score=26.73 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHhhhhhcccc-----CCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 137 FPKKFFYCFWWGLRNLSSLG-----QNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvG-----yGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
....++-.|-|++..++||| ||-..|. .-...+++..+++.+.+-|.+..++..++-.
T Consensus 129 vLa~FlctFvysl~vlrtvg~e~d~~g~FIp~--~avtv~lLlaiisig~~iyfl~~l~~siq~~ 191 (464)
T COG4325 129 VLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK--VAVTVSLLLAIISIGALIYFLHHLMHSIQID 191 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCccccceeh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889999999999996 4445554 2345566777777778888888777666533
No 95
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=24.56 E-value=98 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=20.6
Q ss_pred CeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 307 DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 307 ~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.-.++|.+|.|++...+. ...+.+|+.|
T Consensus 34 ~~vF~V~~G~v~Vti~~~-------~f~v~~G~~F 61 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTIHET-------SFVVTKGGSF 61 (85)
T ss_dssp EEEEEEEESEEEEEETTE-------EEEEETT-EE
T ss_pred EEEEEEEeCEEEEEEcCc-------EEEEeCCCEE
Confidence 368999999999976432 2568888887
No 96
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=24.55 E-value=61 Score=33.23 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 010787 477 TRVPERVPPMLLQKPAEPDF 496 (501)
Q Consensus 477 ~~~~~~~~~~~~~~p~~~~~ 496 (501)
.+++.+.++||+|.||+++|
T Consensus 229 ~~s~~g~PPPPPP~PPp~~~ 248 (480)
T KOG2675|consen 229 AASAPGAPPPPPPAPPPAPF 248 (480)
T ss_pred cccCCCCCCCCCCCCCCccc
Confidence 44555556666676777776
No 97
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.46 E-value=8.6e+02 Score=25.76 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=39.7
Q ss_pred hccHHHHHHHHHHH-----HHHHhccccccccCcHHHHHHHHhhcceeee-------------------CCCCEEEccCC
Q 010787 249 NLPKDLRRDIKRHL-----CLALLMRVPLFEKMDEQLLDALCDRLKPVLY-------------------TEESYIVREGD 304 (501)
Q Consensus 249 ~Lp~~Lr~~i~~~~-----~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~-------------------~~ge~I~~~Gd 304 (501)
.+|..|+.++..-- +......-...+.+++.+..+|+..+..... +-...++.+||
T Consensus 260 kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgD 339 (536)
T KOG0500|consen 260 KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGD 339 (536)
T ss_pred cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCC
Confidence 47777777765432 1223333444555666666665554433222 22345666666
Q ss_pred CCCeEEEEEeeEEEE--EEeCCce
Q 010787 305 PVDEMLFIMRGKLLT--ITTNGGR 326 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~--~~~~~g~ 326 (501)
|+..||.+.- |....|+
T Consensus 340 -----yICrKGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 340 -----YICRKGDVGKEMYIVKEGK 358 (536)
T ss_pred -----eEEecCcccceEEEEEccE
Confidence 7888888753 4555555
No 98
>PRK11171 hypothetical protein; Provisional
Probab=24.32 E-value=1.5e+02 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=31.5
Q ss_pred ceeeeCCCCEEEccCC--CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGD--PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||...-.... ..+++++|++|.+.+... |++ ..+.+||.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~--g~~-----~~L~~GDsi 111 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE--GKT-----HALSEGGYA 111 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC--CEE-----EEECCCCEE
Confidence 4456677765433332 246899999999998753 332 689999977
No 99
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.87 E-value=5.3e+02 Score=23.13 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHhHhHHHHHHhcCCCh
Q 010787 165 VWEICFAVFISISGLVLFSFLIGN-MQTYLQSTT--TRLEEMRVKRRDAEQWMAHRLLPD 221 (501)
Q Consensus 165 ~~E~~~~i~~~i~g~~~fa~iig~-i~~il~~~~--~~~~~~~~~~~~~~~~m~~~~lp~ 221 (501)
-.+-++.+.++.+++...+|++|- +++.+=.+. ....++..|-.+.-+-++++.+++
T Consensus 73 GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 73 GLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 356778888899999999999873 333332221 223344444444444555555554
No 100
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=23.24 E-value=1.5e+02 Score=25.42 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=33.8
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEE-EeCCc-----eeeeeeeeEeCCCCeec
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTI-TTNGG-----RTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~-~~~~g-----~~~~~~~~~l~~G~~fG 342 (501)
....+.||....-.-..+.++.+|.+|+.++. ...++ +.....+ .+++||+|-
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~ 95 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFV 95 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEE
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeeccccee
Confidence 34455777776544447889999999999964 33332 1111112 499999985
No 101
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.93 E-value=5.3e+02 Score=31.84 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.4
Q ss_pred hhhccccCCccccCchhhHHHHHHHHHHHHHHH
Q 010787 150 RNLSSLGQNLETSTYVWEICFAVFISISGLVLF 182 (501)
Q Consensus 150 ~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~f 182 (501)
.--+.++-|.+.+.+.+..+|-++..++|.++.
T Consensus 1060 ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1060 IDSRGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred hhhhccCcCCcccccccceeehhhhhhHHhhhh
Confidence 344566777777778888888777777777664
No 102
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.45 E-value=2.5e+02 Score=23.42 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=27.7
Q ss_pred eCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 293 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 293 ~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..||..=..-++ +++.-|++|.+.+...+ |+. ..+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~d~-Ge~-----v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTPDG-GEP-----VEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEECCC-CeE-----EEEcCCCEE
Confidence 344444333333 78999999999876544 543 688999977
No 103
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=22.21 E-value=1.6e+02 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.511 Sum_probs=28.4
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhccee
Q 010787 244 ENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPV 291 (501)
Q Consensus 244 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~ 291 (501)
.++|..||+++|.++...+ .-+...+++.+..+...++..
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 5788899999988877654 456677888887777665543
No 104
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.82 E-value=3.2e+02 Score=27.64 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=37.4
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHH
Q 010787 162 STYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRR 229 (501)
Q Consensus 162 p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~ 229 (501)
+......++.++..++..+..++++-.+..+.-+.-.-.++.+-..+++++-+|+..-+++++.|+|+
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33444455566666666666666555555554444333344444455566666666666666666553
No 105
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=2.8e+02 Score=24.58 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHH
Q 010787 196 TTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQ 232 (501)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~ 232 (501)
..+.....+.++++++.++++.++|+.++....+-++
T Consensus 22 k~pgts~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~ 58 (199)
T KOG4484|consen 22 KKPGTSSIKNQIRDLERLLKKKDLPPEVREELERKLQ 58 (199)
T ss_pred cCCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 3456667889999999999999999999887666554
No 106
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=20.54 E-value=1.6e+02 Score=26.44 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 305 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...++.+|++|.+.+... ++ ...+.+||.+
T Consensus 127 ~~~E~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~~ 156 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTIN--GQ-----DYHLVAGQSY 156 (185)
T ss_pred CCcEEEEEEEeEEEEEEC--CE-----EEEecCCCEE
Confidence 346999999999998653 33 2689999977
No 107
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.46 E-value=1.3e+02 Score=26.33 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEe
Q 010787 306 VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFAL 376 (501)
Q Consensus 306 ~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i 376 (501)
.+++.+|++|.+.+.. +|+. ...++||++= +... .+.+..+-..+.++..
T Consensus 95 YDEi~~VlEG~L~i~~--~G~~-----~~A~~GDvi~-------iPkG-------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI--DGQT-----VTAKPGDVIF-------IPKG-------STITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEE--TTEE-----EEEETT-EEE-------E-TT--------EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEE--CCEE-----EEEcCCcEEE-------ECCC-------CEEEEecCCCEEEEEE
Confidence 4789999999998873 3553 6789999772 2222 1555555556666554
No 108
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.05 E-value=2.1e+02 Score=25.88 Aligned_cols=48 Identities=4% Similarity=0.086 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIG 187 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig 187 (501)
.|..=+|++++.-||..-.|..+.+..-+-....=.+++.++.+.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477779999999999888899998888887777777777766666654
Done!