Query 010787
Match_columns 501
No_of_seqs 442 out of 3332
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 8.6E-33 2.9E-37 258.7 14.7 204 190-407 1-204 (212)
2 2ptm_A Hyperpolarization-activ 100.0 1.5E-31 5.2E-36 247.5 22.6 190 195-399 2-191 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 4E-31 1.4E-35 245.5 21.6 188 194-397 2-189 (202)
4 3beh_A MLL3241 protein; transm 100.0 2.3E-32 7.8E-37 276.2 12.0 187 137-398 158-344 (355)
5 3dn7_A Cyclic nucleotide bindi 99.8 4.3E-20 1.5E-24 169.5 15.6 175 263-463 5-180 (194)
6 4f8a_A Potassium voltage-gated 99.8 4.8E-20 1.6E-24 163.4 15.1 142 243-399 5-148 (160)
7 4ev0_A Transcription regulator 99.8 1.6E-18 5.6E-23 161.5 19.9 168 267-461 1-173 (216)
8 3dv8_A Transcriptional regulat 99.8 3.7E-18 1.3E-22 159.6 18.5 179 265-470 3-194 (220)
9 3gyd_A CNMP-BD protein, cyclic 99.8 3.7E-18 1.3E-22 155.9 17.1 149 243-402 13-166 (187)
10 3e97_A Transcriptional regulat 99.8 7.3E-18 2.5E-22 159.0 18.5 178 264-470 5-200 (231)
11 3mdp_A Cyclic nucleotide-bindi 99.8 3.3E-18 1.1E-22 148.2 14.6 130 264-402 5-136 (142)
12 3fx3_A Cyclic nucleotide-bindi 99.8 3E-18 1E-22 162.3 14.5 173 262-461 8-188 (237)
13 3d0s_A Transcriptional regulat 99.8 3.9E-18 1.3E-22 160.4 14.0 180 264-470 5-202 (227)
14 3dkw_A DNR protein; CRP-FNR, H 99.8 5.4E-18 1.8E-22 159.3 14.9 172 264-461 8-188 (227)
15 3ocp_A PRKG1 protein; serine/t 99.8 2.7E-18 9.3E-23 148.6 11.4 130 249-393 7-136 (139)
16 1wgp_A Probable cyclic nucleot 99.8 1.3E-18 4.3E-23 150.2 9.0 129 265-393 6-134 (137)
17 3idb_B CAMP-dependent protein 99.8 4E-18 1.4E-22 151.5 12.2 126 257-393 30-155 (161)
18 2gau_A Transcriptional regulat 99.8 2.2E-17 7.6E-22 155.7 17.4 167 268-461 13-190 (232)
19 3iwz_A CAP-like, catabolite ac 99.7 6.1E-17 2.1E-21 152.3 18.9 172 264-461 10-197 (230)
20 1zyb_A Transcription regulator 99.7 1.6E-17 5.5E-22 156.9 14.4 174 262-461 15-196 (232)
21 2fmy_A COOA, carbon monoxide o 99.7 1.7E-17 5.7E-22 155.4 12.4 163 265-461 4-177 (220)
22 2pqq_A Putative transcriptiona 99.7 5.6E-17 1.9E-21 141.5 14.6 122 264-396 4-126 (149)
23 2z69_A DNR protein; beta barre 99.7 9.3E-17 3.2E-21 141.0 15.4 127 264-400 11-138 (154)
24 1ft9_A Carbon monoxide oxidati 99.7 5E-17 1.7E-21 152.3 12.7 162 266-461 1-173 (222)
25 3ryp_A Catabolite gene activat 99.7 2.6E-16 8.8E-21 145.9 17.0 164 271-461 2-177 (210)
26 2oz6_A Virulence factor regula 99.7 2.6E-16 8.9E-21 145.5 16.5 159 276-461 1-174 (207)
27 1vp6_A CNBD, cyclic-nucleotide 99.7 2.1E-16 7.3E-21 136.2 14.8 121 263-400 9-129 (138)
28 1o5l_A Transcriptional regulat 99.7 8.5E-17 2.9E-21 149.9 12.1 168 270-463 4-176 (213)
29 3pna_A CAMP-dependent protein 99.7 2.9E-16 1E-20 138.4 13.9 118 261-393 34-151 (154)
30 3kcc_A Catabolite gene activat 99.7 1.8E-15 6.3E-20 145.4 18.0 171 274-471 55-243 (260)
31 2a9h_A Voltage-gated potassium 99.7 2.6E-16 8.8E-21 137.9 10.4 62 138-199 82-143 (155)
32 3shr_A CGMP-dependent protein 99.6 9.9E-16 3.4E-20 150.2 14.5 135 245-394 19-153 (299)
33 1orq_C Potassium channel; volt 99.6 9E-16 3.1E-20 144.1 13.2 57 139-195 164-220 (223)
34 3vou_A ION transport 2 domain 99.6 2.4E-15 8.2E-20 131.5 14.5 86 141-226 53-148 (148)
35 4h33_A LMO2059 protein; bilaye 99.6 2.7E-16 9.2E-21 135.3 7.2 92 141-232 44-135 (137)
36 2ih3_C Voltage-gated potassium 99.6 1.5E-15 5.2E-20 127.9 11.6 60 139-198 60-119 (122)
37 4ava_A Lysine acetyltransferas 99.6 3.4E-15 1.2E-19 148.8 15.4 126 264-402 12-138 (333)
38 3e6c_C CPRK, cyclic nucleotide 99.6 2.2E-15 7.6E-20 143.8 13.2 166 266-461 10-187 (250)
39 2d93_A RAP guanine nucleotide 99.6 1.9E-16 6.5E-21 136.1 4.3 124 252-390 3-128 (134)
40 3shr_A CGMP-dependent protein 99.6 2.8E-15 9.7E-20 146.9 11.5 128 261-399 153-282 (299)
41 2qcs_B CAMP-dependent protein 99.6 1.4E-14 4.9E-19 141.2 15.7 127 262-399 154-282 (291)
42 3la7_A Global nitrogen regulat 99.6 1.8E-14 6.1E-19 136.9 15.6 168 278-470 30-218 (243)
43 2qcs_B CAMP-dependent protein 99.6 2.7E-14 9.1E-19 139.3 17.0 127 260-401 34-160 (291)
44 3tnp_B CAMP-dependent protein 99.6 1.8E-14 6.2E-19 147.9 15.3 126 257-393 137-262 (416)
45 2bgc_A PRFA; bacterial infecti 99.6 5.4E-14 1.8E-18 133.2 17.1 172 274-471 2-196 (238)
46 3of1_A CAMP-dependent protein 99.6 1.4E-14 4.8E-19 137.4 13.0 117 262-392 122-238 (246)
47 3of1_A CAMP-dependent protein 99.6 9.5E-15 3.2E-19 138.5 11.7 119 263-396 5-123 (246)
48 4din_B CAMP-dependent protein 99.6 1.3E-14 4.5E-19 147.3 12.0 128 261-399 244-373 (381)
49 3eff_K Voltage-gated potassium 99.5 2.6E-14 8.8E-19 123.6 11.7 59 140-198 40-98 (139)
50 4din_B CAMP-dependent protein 99.5 4.3E-14 1.5E-18 143.5 13.4 124 260-398 125-248 (381)
51 3tnp_B CAMP-dependent protein 99.5 3.4E-14 1.2E-18 145.9 9.8 121 263-394 265-392 (416)
52 1o7f_A CAMP-dependent RAP1 gua 99.5 1.2E-13 4.2E-18 144.1 12.7 135 250-396 27-164 (469)
53 1o7f_A CAMP-dependent RAP1 gua 99.5 1.9E-13 6.6E-18 142.6 12.4 120 261-394 333-454 (469)
54 2r9r_B Paddle chimera voltage 99.4 3E-13 1E-17 141.7 12.3 61 138-198 373-433 (514)
55 3b02_A Transcriptional regulat 99.4 4.4E-13 1.5E-17 122.7 11.3 146 291-470 2-164 (195)
56 2k1e_A Water soluble analogue 99.4 1.4E-13 4.9E-18 112.2 4.2 58 140-197 40-97 (103)
57 2q67_A Potassium channel prote 99.4 3.8E-12 1.3E-16 105.6 12.5 57 141-197 50-106 (114)
58 2zcw_A TTHA1359, transcription 99.4 1.1E-12 3.9E-17 120.6 9.4 143 284-461 1-156 (202)
59 4f7z_A RAP guanine nucleotide 99.4 1.9E-12 6.4E-17 147.4 13.1 127 254-392 31-160 (999)
60 3cf6_E RAP guanine nucleotide 99.4 2.1E-12 7.2E-17 140.2 11.7 133 244-391 12-146 (694)
61 3ouf_A Potassium channel prote 99.3 8.2E-12 2.8E-16 100.4 11.3 55 141-195 33-87 (97)
62 3ldc_A Calcium-gated potassium 99.3 2.4E-11 8.2E-16 94.5 11.1 53 141-193 29-81 (82)
63 4f7z_A RAP guanine nucleotide 99.3 2.3E-11 7.9E-16 138.4 13.9 115 261-389 333-449 (999)
64 3pjs_K KCSA, voltage-gated pot 99.2 1.4E-12 4.9E-17 115.9 -1.2 60 140-199 67-126 (166)
65 1xl4_A Inward rectifier potass 99.1 2.4E-10 8.1E-15 111.0 10.5 55 140-194 82-136 (301)
66 1p7b_A Integral membrane chann 99.1 1.7E-10 5.8E-15 113.2 8.4 57 140-196 96-152 (333)
67 3um7_A Potassium channel subfa 99.0 1.1E-09 3.8E-14 105.9 10.4 57 140-196 115-171 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.9 5.4E-09 1.9E-13 102.2 11.4 57 140-196 78-134 (321)
69 3sya_A G protein-activated inw 98.8 1.8E-08 6.3E-13 98.5 11.7 57 141-197 92-150 (340)
70 4gx0_A TRKA domain protein; me 98.8 1.6E-08 5.5E-13 107.8 11.7 53 141-193 52-105 (565)
71 3um7_A Potassium channel subfa 98.8 2.1E-08 7.3E-13 96.9 11.1 58 141-198 225-288 (309)
72 3ukm_A Potassium channel subfa 98.7 5.7E-08 2E-12 92.4 11.3 56 141-196 202-264 (280)
73 3ukm_A Potassium channel subfa 98.7 1.9E-08 6.6E-13 95.7 7.9 55 140-194 93-147 (280)
74 3spc_A Inward-rectifier K+ cha 98.7 1.3E-07 4.6E-12 92.5 11.8 56 140-195 94-151 (343)
75 3rvy_A ION transport protein; 98.5 1.3E-07 4.4E-12 91.7 7.3 62 137-198 177-244 (285)
76 1lnq_A MTHK channels, potassiu 98.5 9.9E-09 3.4E-13 102.0 -2.1 56 141-196 46-101 (336)
77 4dxw_A Navrh, ION transport pr 96.2 0.023 8E-07 52.4 10.1 56 138-193 163-223 (229)
78 3rns_A Cupin 2 conserved barre 83.1 4.5 0.00016 36.7 8.8 69 287-376 38-106 (227)
79 3fjs_A Uncharacterized protein 80.6 8.1 0.00028 30.6 8.5 67 288-375 38-104 (114)
80 2ozj_A Cupin 2, conserved barr 80.5 5.4 0.00018 31.4 7.4 65 291-376 43-107 (114)
81 1yfu_A 3-hydroxyanthranilate-3 76.4 9.1 0.00031 33.0 7.8 58 305-379 54-112 (174)
82 2pfw_A Cupin 2, conserved barr 75.8 15 0.0005 28.8 8.7 68 288-376 36-103 (116)
83 3kg2_A Glutamate receptor 2; I 72.9 4.8 0.00016 44.0 6.6 71 140-216 563-633 (823)
84 1yhf_A Hypothetical protein SP 72.5 16 0.00055 28.4 8.2 68 288-376 42-109 (115)
85 3lwc_A Uncharacterized protein 72.1 9.6 0.00033 30.6 6.7 45 290-342 44-88 (119)
86 1zvf_A 3-hydroxyanthranilate 3 70.2 13 0.00043 32.1 7.1 83 280-379 13-114 (176)
87 3d0j_A Uncharacterized protein 68.1 17 0.00058 30.1 7.2 62 303-379 47-110 (140)
88 4e2g_A Cupin 2 conserved barre 67.2 18 0.00063 28.7 7.5 77 288-385 43-123 (126)
89 2qnk_A 3-hydroxyanthranilate 3 66.3 15 0.00051 34.2 7.3 59 304-379 49-107 (286)
90 1o5u_A Novel thermotoga mariti 60.4 29 0.00099 26.8 7.2 47 288-342 33-79 (101)
91 3rns_A Cupin 2 conserved barre 59.6 23 0.00077 31.9 7.3 68 288-376 155-223 (227)
92 2gu9_A Tetracenomycin polyketi 57.5 16 0.00056 28.1 5.4 46 289-341 24-72 (113)
93 2bnm_A Epoxidase; oxidoreducta 57.4 24 0.00081 30.7 7.0 49 291-342 122-173 (198)
94 3h8u_A Uncharacterized conserv 56.4 15 0.00051 29.2 5.0 48 288-341 41-89 (125)
95 1v70_A Probable antibiotics sy 55.8 20 0.00069 26.9 5.6 46 289-341 31-77 (105)
96 1dgw_A Canavalin; duplicated s 55.6 13 0.00045 32.2 4.8 52 288-342 43-94 (178)
97 2i45_A Hypothetical protein; n 53.2 11 0.00037 29.2 3.5 68 294-381 36-103 (107)
98 4axo_A EUTQ, ethanolamine util 52.5 34 0.0012 28.8 6.7 52 305-377 83-134 (151)
99 2q30_A Uncharacterized protein 52.2 45 0.0015 25.3 7.2 67 290-376 37-105 (110)
100 3es4_A Uncharacterized protein 51.5 17 0.00059 29.1 4.4 44 292-342 48-91 (116)
101 3bcw_A Uncharacterized protein 51.1 12 0.00041 30.3 3.5 44 292-342 55-98 (123)
102 3d82_A Cupin 2, conserved barr 50.0 35 0.0012 25.6 6.1 50 307-377 51-100 (102)
103 4b29_A Dimethylsulfoniopropion 48.3 28 0.00095 31.2 5.7 43 293-341 139-181 (217)
104 3ibm_A Cupin 2, conserved barr 47.9 25 0.00086 29.9 5.3 46 289-341 59-104 (167)
105 2q1z_B Anti-sigma factor CHRR, 47.8 27 0.00093 30.7 5.6 65 287-376 126-192 (195)
106 2fqp_A Hypothetical protein BP 47.3 13 0.00044 28.3 3.0 48 290-342 22-70 (97)
107 2l53_B CAM, voltage-gated sodi 47.1 20 0.0007 21.3 3.1 19 408-426 5-23 (31)
108 2kxw_B Sodium channel protein 44.0 23 0.0008 20.3 2.9 19 408-426 5-23 (27)
109 3es1_A Cupin 2, conserved barr 43.5 22 0.00074 30.7 4.1 47 289-341 82-128 (172)
110 3bu7_A Gentisate 1,2-dioxygena 43.2 36 0.0012 33.6 6.2 47 289-341 126-172 (394)
111 3jzv_A Uncharacterized protein 41.9 23 0.00078 30.3 4.1 45 290-341 57-101 (166)
112 2pyt_A Ethanolamine utilizatio 41.0 67 0.0023 26.1 6.7 44 290-342 61-104 (133)
113 2b8m_A Hypothetical protein MJ 40.5 26 0.0009 27.3 4.0 44 291-341 32-76 (117)
114 3kgz_A Cupin 2 conserved barre 40.4 24 0.00081 29.8 3.9 44 291-341 49-92 (156)
115 1vj2_A Novel manganese-contain 39.7 30 0.001 27.6 4.3 45 290-341 52-96 (126)
116 2opk_A Hypothetical protein; p 38.7 32 0.0011 26.9 4.2 34 304-342 51-84 (112)
117 2f4p_A Hypothetical protein TM 38.7 47 0.0016 27.4 5.5 47 290-342 52-98 (147)
118 1lr5_A Auxin binding protein 1 38.3 32 0.0011 28.8 4.5 49 290-341 45-98 (163)
119 1sfn_A Conserved hypothetical 38.1 1E+02 0.0036 27.8 8.3 65 290-377 54-118 (246)
120 2o1q_A Putative acetyl/propion 38.0 22 0.00074 29.6 3.2 50 288-342 46-95 (145)
121 1y9q_A Transcriptional regulat 37.9 49 0.0017 28.5 5.7 44 291-341 109-154 (192)
122 1uij_A Beta subunit of beta co 37.6 30 0.001 34.5 4.7 52 287-341 50-101 (416)
123 4i4a_A Similar to unknown prot 36.7 1.5E+02 0.0051 23.1 9.6 79 290-389 38-120 (128)
124 2d40_A Z3393, putative gentisa 36.5 72 0.0025 30.8 7.2 72 290-382 272-343 (354)
125 3i7d_A Sugar phosphate isomera 36.3 32 0.0011 29.1 4.1 46 289-341 46-93 (163)
126 1o4t_A Putative oxalate decarb 35.9 34 0.0012 27.6 4.1 45 290-341 61-106 (133)
127 1fi2_A Oxalate oxidase, germin 35.8 68 0.0023 28.0 6.4 52 288-342 74-130 (201)
128 3nw4_A Gentisate 1,2-dioxygena 35.0 58 0.002 31.7 6.1 72 289-380 106-177 (368)
129 3l2h_A Putative sugar phosphat 34.9 33 0.0011 28.7 4.0 46 289-341 49-96 (162)
130 4e2q_A Ureidoglycine aminohydr 34.9 61 0.0021 30.0 6.0 70 289-378 73-142 (266)
131 2ea7_A 7S globulin-1; beta bar 34.8 33 0.0011 34.3 4.5 53 286-341 61-113 (434)
132 1sfn_A Conserved hypothetical 34.2 44 0.0015 30.4 5.0 49 287-342 166-215 (246)
133 3jqo_C TRAN protein; helical o 34.1 20 0.00069 21.4 1.6 12 487-498 3-15 (34)
134 2cav_A Protein (canavalin); vi 33.9 38 0.0013 34.0 4.8 52 287-341 87-138 (445)
135 3ht1_A REMF protein; cupin fol 32.9 38 0.0013 27.4 4.0 45 292-341 45-89 (145)
136 3h7j_A Bacilysin biosynthesis 32.3 64 0.0022 29.2 5.7 47 288-341 36-82 (243)
137 1j58_A YVRK protein; cupin, de 31.7 73 0.0025 31.0 6.4 52 288-342 259-312 (385)
138 2vqa_A SLL1358 protein, MNCA; 31.2 71 0.0024 30.7 6.2 50 289-341 55-106 (361)
139 1j58_A YVRK protein; cupin, de 31.2 64 0.0022 31.4 5.9 51 288-341 81-132 (385)
140 2vpv_A Protein MIF2, MIF2P; nu 31.0 32 0.0011 29.4 3.2 31 305-342 109-139 (166)
141 2oa2_A BH2720 protein; 1017534 30.7 67 0.0023 26.3 5.2 51 290-341 47-98 (148)
142 3bu7_A Gentisate 1,2-dioxygena 29.8 51 0.0018 32.5 4.8 74 289-383 297-373 (394)
143 1sef_A Conserved hypothetical 29.6 57 0.0019 30.2 5.0 47 288-341 184-231 (274)
144 2d5f_A Glycinin A3B4 subunit; 28.1 96 0.0033 31.5 6.6 59 281-341 362-422 (493)
145 1sq4_A GLXB, glyoxylate-induce 27.8 62 0.0021 30.1 4.9 49 286-341 191-240 (278)
146 3cew_A Uncharacterized cupin p 27.1 48 0.0016 26.1 3.5 45 290-341 30-76 (125)
147 3c3v_A Arachin ARAH3 isoform; 26.3 94 0.0032 31.7 6.2 59 281-341 367-427 (510)
148 1fxz_A Glycinin G1; proglycini 26.1 96 0.0033 31.4 6.2 54 286-341 338-393 (476)
149 1juh_A Quercetin 2,3-dioxygena 25.9 1.4E+02 0.0047 28.7 7.1 69 296-384 262-333 (350)
150 2xp1_A SPT6; transcription, IW 25.7 98 0.0034 26.7 5.4 38 268-311 12-49 (178)
151 3nw4_A Gentisate 1,2-dioxygena 25.5 93 0.0032 30.3 5.7 75 290-385 283-357 (368)
152 2vqa_A SLL1358 protein, MNCA; 25.5 1.2E+02 0.004 29.1 6.6 52 288-342 236-289 (361)
153 2d40_A Z3393, putative gentisa 25.3 55 0.0019 31.7 4.1 48 289-342 103-150 (354)
154 3lag_A Uncharacterized protein 25.3 24 0.00081 27.1 1.2 50 288-341 19-69 (98)
155 3h7j_A Bacilysin biosynthesis 25.1 65 0.0022 29.1 4.4 46 290-342 149-195 (243)
156 3ebr_A Uncharacterized RMLC-li 24.8 86 0.0029 26.4 4.8 66 287-375 43-112 (159)
157 2qnk_A 3-hydroxyanthranilate 3 23.8 2.3E+02 0.0077 26.4 7.6 127 220-378 138-277 (286)
158 1y3t_A Hypothetical protein YX 23.8 95 0.0032 29.3 5.5 46 289-341 49-95 (337)
159 2o8q_A Hypothetical protein; c 23.0 83 0.0029 25.0 4.3 29 307-341 65-93 (134)
160 3fz3_A Prunin; TREE NUT allerg 22.6 1.4E+02 0.0049 30.4 6.6 60 280-341 388-449 (531)
161 1sq4_A GLXB, glyoxylate-induce 21.9 68 0.0023 29.8 3.9 45 290-341 72-118 (278)
162 3myx_A Uncharacterized protein 21.8 1E+02 0.0034 28.0 4.8 31 306-342 186-216 (238)
163 1rc6_A Hypothetical protein YL 21.8 69 0.0024 29.3 3.9 47 288-341 181-228 (261)
164 3cjx_A Protein of unknown func 21.8 82 0.0028 26.8 4.0 47 288-342 45-91 (165)
165 3s7i_A Allergen ARA H 1, clone 21.6 81 0.0028 31.3 4.5 49 290-341 48-96 (418)
166 3o14_A Anti-ecfsigma factor, C 21.5 1.2E+02 0.0041 27.1 5.3 64 289-377 46-109 (223)
167 4e2q_A Ureidoglycine aminohydr 20.6 1.1E+02 0.0037 28.3 4.8 51 285-342 185-236 (266)
168 2e9q_A 11S globulin subunit be 20.1 1.3E+02 0.0044 30.3 5.7 71 270-341 48-137 (459)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=8.6e-33 Score=258.71 Aligned_cols=204 Identities=24% Similarity=0.380 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhcc
Q 010787 190 QTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMR 269 (501)
Q Consensus 190 ~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 269 (501)
++|+++++.+..+|+++++.+++||+.+++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468889999999999999999999999999999999999999999998899999999999999999999999998887 8
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhh
Q 010787 270 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWA 349 (501)
Q Consensus 270 i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~ 349 (501)
+|+|++++++++..++..++.+.|.|||+|+++||+++.+|||.+|.|+++.. | . .+..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~--~--~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--N--T--VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--S--C--EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--C--e--EEEEecCCCCcCcHHhc--
Confidence 99999999999999999999999999999999999999999999999999863 3 2 25899999999999884
Q ss_pred cCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 010787 350 LDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQW 407 (501)
Q Consensus 350 ~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~ 407 (501)
.+.. +.++++++|.++|+++.|++++|.++++++|++....++...+..+...
T Consensus 152 -~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 152 -KEQV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp -SSSC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred -cCCC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 3320 0248999999999999999999999999999988877777665554433
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=1.5e-31 Score=247.45 Aligned_cols=190 Identities=23% Similarity=0.430 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccc
Q 010787 195 STTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFE 274 (501)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~ 274 (501)
+++.+..+|+++++.+++||+.+++|++|+.||++|++|.|+. ++.+++++++.||++||.++..+.+.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 5677889999999999999999999999999999999999984 788999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCC
Q 010787 275 KMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQS 354 (501)
Q Consensus 275 ~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~ 354 (501)
+++++++..++..++.+.|.||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++||+.+++ .+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~---~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLL---TRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHH---HSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHc---CCCc
Confidence 99999999999999999999999999999999999999999999987 4454 2 5899999999999885 3332
Q ss_pred CCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 355 SSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 355 ~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
++++++|.++|+++.|++++|.++++++|++...+++..
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 389999999999999999999999999999776554443
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.98 E-value=4e-31 Score=245.49 Aligned_cols=188 Identities=27% Similarity=0.446 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhcccccc
Q 010787 194 QSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLF 273 (501)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F 273 (501)
++++.+..+|+++++.+++||+.+++|++|+.||++|++|.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 35778899999999999999999999999999999999999984 78899999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCC
Q 010787 274 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 353 (501)
Q Consensus 274 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~ 353 (501)
.+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.+++ .+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~---~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLL---TRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHH---HCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHh---cCC
Confidence 999999999999999999999999999999999999999999999985 34543 468999999999885 333
Q ss_pred CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHH
Q 010787 354 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 397 (501)
Q Consensus 354 ~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~ 397 (501)
+ ++++++|.++|+++.|++++|.++++++|++....++
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 189 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence 2 3899999999999999999999999999987654333
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=2.3e-32 Score=276.19 Aligned_cols=187 Identities=24% Similarity=0.358 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 010787 137 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~ 216 (501)
.+..|..|+||+++||||+||||++|.|..++++++++|++|++++++.+|.+++.+.+...+
T Consensus 158 ~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~----------------- 220 (355)
T 3beh_A 158 KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR----------------- 220 (355)
T ss_dssp HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 345689999999999999999999999999999999999999999999999998776532110
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCC
Q 010787 217 RLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEE 296 (501)
Q Consensus 217 ~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~g 296 (501)
+++. ...+.++++++|++++++++++++..++.+.++||
T Consensus 221 -----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHH------------------------------HHHC-------------------------------
T ss_pred -----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 0000 02467889999999999999999999999999999
Q ss_pred CEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEe
Q 010787 297 SYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFAL 376 (501)
Q Consensus 297 e~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i 376 (501)
|.|+++||+++++|||.+|.|+++..+ + ..+++|++|||.+++ .+.+ +.++++|.++|+++.|
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~~~------~~~~~~A~~~~~l~~i 322 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SGEP------RSATVSAATTVSLLSL 322 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CCCC------cceEEEECccEEEEEE
Confidence 999999999999999999999998654 1 579999999999874 4443 3899999999999999
Q ss_pred cHHHHHHHHHHhHHHHHHHHHH
Q 010787 377 MADDLKFVASQFRRLHSKQLRH 398 (501)
Q Consensus 377 ~~~~f~~l~~~~p~~~~~~l~~ 398 (501)
++++|.++++++|++....++.
T Consensus 323 ~~~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 323 HSADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp ----------------------
T ss_pred eHHHHHHHHHHCHHHHHHHHHH
Confidence 9999999999999976644443
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.83 E-value=4.3e-20 Score=169.50 Aligned_cols=175 Identities=9% Similarity=0.081 Sum_probs=119.3
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCee
Q 010787 263 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 263 ~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~f 341 (501)
+..++++++.|.+++++.+..+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356778899999999999999999999999999999999999999999999999999864 5677776 4899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 010787 342 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRR 421 (501)
Q Consensus 342 Ge~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~ 421 (501)
|+...+ +++.+ +.++++|+++|+++.|++++|.+++.++|++....++.. ......
T Consensus 83 ge~~~~--~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~----------------~~~l~~ 138 (194)
T 3dn7_A 83 SDYMAF--QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVY----------------QKSFAA 138 (194)
T ss_dssp CCHHHH--HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHH----------------HHHHHH
T ss_pred eehHHH--hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHH----------------HHHHHH
Confidence 988543 33332 389999999999999999999999999998765333332 233344
Q ss_pred HHHhHhHHHHHHHHhHhHHHHhhcCCCCCCcchhhhhhHHHH
Q 010787 422 YSKKKLEESLRAEENRLQDALAKAGGSSPSLGATIYASRFAA 463 (501)
Q Consensus 422 ~~~r~~~~~l~~aeery~~~~~~~~~~~~~~~~~~~As~~~~ 463 (501)
..++.......++++|+..++...|....++++..+|+-...
T Consensus 139 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~ 180 (194)
T 3dn7_A 139 AQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGF 180 (194)
T ss_dssp HHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCC
Confidence 566677778889999999999999999999999999987644
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.83 E-value=4.8e-20 Score=163.44 Aligned_cols=142 Identities=27% Similarity=0.401 Sum_probs=119.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe
Q 010787 243 EENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 322 (501)
Q Consensus 243 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~ 322 (501)
.+++++.||++||.++..+++.++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCceeeeeeeeEeCCCCeechhhhhhhcCC--CCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 323 NGGRTGFFNSEYLGAGDFCGEELLTWALDP--QSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 323 ~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~--~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
+ . + +..+++|++||+.+++ .+ .+ +.++++|.++|+++.|++++|.++++++|++....++..
T Consensus 85 ~--~--~--~~~~~~G~~fG~~~~~---~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 D--E--V--VAILGKGDVFGDVFWK---EATLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp T--E--E--EEEEETTCEEECCTTT---CSSCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred C--E--E--EEEecCCCEeCcHHHh---cCcccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 2 5899999999999884 33 22 489999999999999999999999999999877555543
No 7
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.81 E-value=1.6e-18 Score=161.53 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=135.3
Q ss_pred hccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhh
Q 010787 267 LMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEEL 345 (501)
Q Consensus 267 l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~ 345 (501)
++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46889999999999999999999999999999999999999999999999999865 5677766 59999999999998
Q ss_pred hhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHh
Q 010787 346 LTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKK 425 (501)
Q Consensus 346 l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r 425 (501)
++ .+.+ +.++++|.++|+++.|++++|.+++.++|++....++..... .....++
T Consensus 79 ~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------~~~~~~~ 133 (216)
T 4ev0_A 79 LL---DEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR----------------LREADLE 133 (216)
T ss_dssp HH---HCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHH
T ss_pred hc---CCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH----------------HHHHHHH
Confidence 74 3332 389999999999999999999999999999776554444332 2234455
Q ss_pred HhHHHHHHHHhHhHHHHh----hcCCCCCCcchhhhhhHH
Q 010787 426 KLEESLRAEENRLQDALA----KAGGSSPSLGATIYASRF 461 (501)
Q Consensus 426 ~~~~~l~~aeery~~~~~----~~~~~~~~~~~~~~As~~ 461 (501)
.......++++|+..++. +.+....++++..+|+..
T Consensus 134 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l 173 (216)
T 4ev0_A 134 LDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALA 173 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHh
Confidence 555666778888887763 345566778888888766
No 8
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.79 E-value=3.7e-18 Score=159.59 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=138.0
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCe--e
Q 010787 265 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDF--C 341 (501)
Q Consensus 265 ~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~--f 341 (501)
++++++|+|.+++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 578999999999999999999999999999999999999999999999999999985 45677766 589999999 7
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 010787 342 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRR 421 (501)
Q Consensus 342 Ge~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~ 421 (501)
|+.++ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++...+.+ ..
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~ 135 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF----------------SD 135 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HH
Confidence 88887 45443 3899999999999999999999999999998765554443322 22
Q ss_pred HHHhHhHHHHHHHHhHhHHHHhhcCC----CCCCcchhhhhhHH------HHHHHHHHh
Q 010787 422 YSKKKLEESLRAEENRLQDALAKAGG----SSPSLGATIYASRF------AANALRLIR 470 (501)
Q Consensus 422 ~~~r~~~~~l~~aeery~~~~~~~~~----~~~~~~~~~~As~~------~~~~~~~~~ 470 (501)
...+.......++++|+..++...+. ...++++..+|+.. ++++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 136 VMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33344444556677777766654332 33467777788776 344555554
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.78 E-value=3.7e-18 Score=155.90 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=125.4
Q ss_pred HHHHHhhccHHH----HHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEE
Q 010787 243 EENLLCNLPKDL----RRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 318 (501)
Q Consensus 243 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~ 318 (501)
+....+.+++++ +.+...+...++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 455556666654 3444555667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHH
Q 010787 319 TITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 397 (501)
Q Consensus 319 ~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~ 397 (501)
++.. .+|++.+ +..+++|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH---HCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh---CCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 9854 5677766 5899999999999974 3333 3899999999999999999999999999998876665
Q ss_pred HHHHh
Q 010787 398 HTFRF 402 (501)
Q Consensus 398 ~~~~~ 402 (501)
...+.
T Consensus 162 ~l~~~ 166 (187)
T 3gyd_A 162 RLLQL 166 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 10
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.78 E-value=7.3e-18 Score=158.95 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=135.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46789999999999999999999999999999999999999999999999999999865 4677766 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 422 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~ 422 (501)
+.+++ .+.+ +.++++|.++|+++.|++++|.+++.++|++...+++...+.... .
T Consensus 83 ~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~----------------~ 137 (231)
T 3e97_A 83 ETAVL---AHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF----------------L 137 (231)
T ss_dssp TTTTT---CCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH----------------H
T ss_pred eHHHh---CCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH----------------H
Confidence 99884 4443 389999999999999999999999999999877666555433221 1
Q ss_pred HHhHhHHHHHHHH-hHhHHHHhhcC----------CCCCCcchhhhhhHH------HHHHHHHHh
Q 010787 423 SKKKLEESLRAEE-NRLQDALAKAG----------GSSPSLGATIYASRF------AANALRLIR 470 (501)
Q Consensus 423 ~~r~~~~~l~~ae-ery~~~~~~~~----------~~~~~~~~~~~As~~------~~~~~~~~~ 470 (501)
.++.. ...+++ +|+..++...+ .....+++..+|+.. ++++++.+.
T Consensus 138 ~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 138 NDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp HHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11111 334444 56655553322 344567788888765 345555554
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.77 E-value=3.3e-18 Score=148.23 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=108.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeee-eeeeEeCCCCee
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGF-FNSEYLGAGDFC 341 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~-~~~~~l~~G~~f 341 (501)
.++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ ..+..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 45789999999999999999999999999999999999999999999999999999843 4455543 013899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010787 342 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRF 402 (501)
Q Consensus 342 Ge~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~ 402 (501)
|+.++ +.+.+ +.++++|.++|+++.|++++|.++++++|++...+++...+.
T Consensus 85 G~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 136 (142)
T 3mdp_A 85 GVSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAA 136 (142)
T ss_dssp CGGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99988 44443 488999999999999999999999999999887766666554
No 12
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.77 E-value=3e-18 Score=162.31 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=135.7
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCe
Q 010787 262 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDF 340 (501)
Q Consensus 262 ~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~ 340 (501)
...++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 346789999999999999999999999999999999999999999999999999999986 45677766 589999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 010787 341 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWR 420 (501)
Q Consensus 341 fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~ 420 (501)
||+..++ .+.+ +.++++|.++|+++.|++++|.+++.++|++....++...+. ..
T Consensus 86 ~G~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------l~ 140 (237)
T 3fx3_A 86 FGEAVAL---RNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH----------------LH 140 (237)
T ss_dssp ECHHHHH---HTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----------------HH
T ss_pred echHHHh---cCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----------------HH
Confidence 9999985 3332 389999999999999999999999999999776555444332 12
Q ss_pred HHHHhHhHHHHHHHHhHhHHHHhhc-----CCCCCCcc--hhhhhhHH
Q 010787 421 RYSKKKLEESLRAEENRLQDALAKA-----GGSSPSLG--ATIYASRF 461 (501)
Q Consensus 421 ~~~~r~~~~~l~~aeery~~~~~~~-----~~~~~~~~--~~~~As~~ 461 (501)
...++.......++++|+..++... ++...++| +..+|+..
T Consensus 141 ~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~l 188 (237)
T 3fx3_A 141 SLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRL 188 (237)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHh
Confidence 2334444445567788888777653 22234455 56677654
No 13
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.76 E-value=3.9e-18 Score=160.42 Aligned_cols=180 Identities=23% Similarity=0.318 Sum_probs=139.0
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999865 4677766 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 422 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~ 422 (501)
+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++....++...+.. +..
T Consensus 83 ~~~~~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~~ 137 (227)
T 3d0s_A 83 ELSIF---DPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRL----------------RRT 137 (227)
T ss_dssp CHHHH---SCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHH----------------HHH
T ss_pred eHHHc---CCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH----------------HHH
Confidence 99884 4443 3899999999999999999999999999998765555543321 223
Q ss_pred HHhHhHHHHHHHHhHhHHHHhh-----------cCCCCCCcchhhhhhHH------HHHHHHHHh
Q 010787 423 SKKKLEESLRAEENRLQDALAK-----------AGGSSPSLGATIYASRF------AANALRLIR 470 (501)
Q Consensus 423 ~~r~~~~~l~~aeery~~~~~~-----------~~~~~~~~~~~~~As~~------~~~~~~~~~ 470 (501)
.++.......++++|+..++.. .+.....+++..+|+.. ++++++.+.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444555666776665532 12244567777777653 344555554
No 14
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.76 E-value=5.4e-18 Score=159.26 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=137.2
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 4678999999999999999999999999999999999999999999999999999985 44577766 48999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 422 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~ 422 (501)
+.++ +.+.+ .+.++++|.++|+++.|++++|.+++.++|++....++...+. ....
T Consensus 86 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------l~~~ 141 (227)
T 3dkw_A 86 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR----------------LHQR 141 (227)
T ss_dssp CTTT---TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH----------------HHHH
T ss_pred eHHh---cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHH
Confidence 9987 34443 1388999999999999999999999999999876555444332 1223
Q ss_pred HHhHhHHHHHHHHhHhHHHHh-hcCC-------CCCCcchhhhhhHH
Q 010787 423 SKKKLEESLRAEENRLQDALA-KAGG-------SSPSLGATIYASRF 461 (501)
Q Consensus 423 ~~r~~~~~l~~aeery~~~~~-~~~~-------~~~~~~~~~~As~~ 461 (501)
..+.......++++|+..++. ..+. ....+++..+|+..
T Consensus 142 ~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~l 188 (227)
T 3dkw_A 142 IDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHL 188 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHh
Confidence 344445556778888887653 2332 45667888888765
No 15
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=2.7e-18 Score=148.62 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=112.7
Q ss_pred hccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceee
Q 010787 249 NLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTG 328 (501)
Q Consensus 249 ~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~ 328 (501)
.+|..+|.+...+...++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 5788888888888999999999999999999999999999999999999999999999999999999999965 343
Q ss_pred eeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 329 FFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 329 ~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
+ +..+++|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|.+++
T Consensus 83 ~--~~~~~~G~~fGe~~~l---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp E--EEEECTTCEESCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred E--EEEeCCCCEeccHHHH---CCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 2 5899999999999985 3333 388999999999999999999999999998654
No 16
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.76 E-value=1.3e-18 Score=150.22 Aligned_cols=129 Identities=72% Similarity=1.203 Sum_probs=109.3
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechh
Q 010787 265 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEE 344 (501)
Q Consensus 265 ~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 344 (501)
++++++++|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++...+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 46889999999999999999999999999999999999999999999999999977666777766423499999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 345 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 345 ~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
++++.+++.++.+.|.++++++|.++|+++.|++++|.++++++|+++.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8622245554333334589999999999999999999999999997543
No 17
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.76 E-value=4e-18 Score=151.49 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeC
Q 010787 257 DIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLG 336 (501)
Q Consensus 257 ~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~ 336 (501)
+-......++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..++
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~ 107 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 107 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcC
Confidence 3344556789999999999999999999999999999999999999999999999999999998877787776 48999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 337 AGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 337 ~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
+|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|.++.
T Consensus 108 ~G~~fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 108 NRGSFGELALM---YNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp SCCEECGGGGT---CCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CCCEechHHHH---cCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 99999999984 4443 489999999999999999999999999998654
No 18
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=2.2e-17 Score=155.74 Aligned_cols=167 Identities=15% Similarity=0.205 Sum_probs=129.5
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhh
Q 010787 268 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELL 346 (501)
Q Consensus 268 ~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l 346 (501)
..+|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 3679999999999999999999999999999999999999999999999999854 4566665 599999999999988
Q ss_pred hhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhH
Q 010787 347 TWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKK 426 (501)
Q Consensus 347 ~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~ 426 (501)
+ .+.+ +.++++|.++|+++.|++++|.+++.++|++....++...+.. ....++.
T Consensus 91 ~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~~~~~~ 145 (232)
T 2gau_A 91 F---AEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL----------------GYAERRT 145 (232)
T ss_dssp H---HTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_pred h---CCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 5 3333 3899999999999999999999999999998765555544322 2233444
Q ss_pred hHHHHHHHHhHhHHHHh----hc------CCCCCCcchhhhhhHH
Q 010787 427 LEESLRAEENRLQDALA----KA------GGSSPSLGATIYASRF 461 (501)
Q Consensus 427 ~~~~l~~aeery~~~~~----~~------~~~~~~~~~~~~As~~ 461 (501)
......++++|+..++. ++ +....++++..+|+..
T Consensus 146 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 190 (232)
T 2gau_A 146 VTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLS 190 (232)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHh
Confidence 44455667777776652 22 3455677888887654
No 19
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.74 E-value=6.1e-17 Score=152.34 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=125.2
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+++.++|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 4578899999999999999999999999999999999999999999999999999985 45677766 48999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHh-----HHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQF-----RRLHSKQLRHTFRFYSQQWRSWAACFIQA 417 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~-----p~~~~~~l~~~~~~~s~~~~~~~~~~~q~ 417 (501)
+..++ ....+ +.++++|.++|+++.|++++|.+++.++ |++...+++...+.
T Consensus 88 ~~~~~--~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~--------------- 144 (230)
T 3iwz_A 88 EMGLF--IESDT------REVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKR--------------- 144 (230)
T ss_dssp CGGGT--SCCSB------CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHH---------------
T ss_pred ehhhh--cCCCC------ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHH---------------
Confidence 99985 22222 3889999999999999999999999999 98766554444322
Q ss_pred HHHHHHHhHhHHHHHHHHhHhHHHHhhcCC----------CCCCcchhhhhhHH
Q 010787 418 AWRRYSKKKLEESLRAEENRLQDALAKAGG----------SSPSLGATIYASRF 461 (501)
Q Consensus 418 ~~~~~~~r~~~~~l~~aeery~~~~~~~~~----------~~~~~~~~~~As~~ 461 (501)
.+...++.......++++|+..++..... ....+++..+|+..
T Consensus 145 -l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~l 197 (230)
T 3iwz_A 145 -LLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLV 197 (230)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHh
Confidence 22344455555667788888877654322 22345677777654
No 20
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.74 E-value=1.6e-17 Score=156.95 Aligned_cols=174 Identities=12% Similarity=0.142 Sum_probs=138.0
Q ss_pred HHHHHhccccccccCcHHHHHHHHhh--cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCC
Q 010787 262 LCLALLMRVPLFEKMDEQLLDALCDR--LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAG 338 (501)
Q Consensus 262 ~~~~~l~~i~~F~~l~~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G 338 (501)
....+++++++|..++++.+..++.. ++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34667899999999999999999998 9999999999999999999999999999999985 45677766 4899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 010787 339 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAA 418 (501)
Q Consensus 339 ~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~ 418 (501)
++||+.+++ .+.+ .+.++++|+++|+++.|++++|.+++.++|++....++...+.
T Consensus 93 ~~fG~~~~~---~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~---------------- 148 (232)
T 1zyb_A 93 YLIEPQSLF---GMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR---------------- 148 (232)
T ss_dssp EEECGGGGS---SSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH----------------
T ss_pred CeeeehHHh---CCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH----------------
Confidence 999999984 4432 1389999999999999999999999999999776554443322
Q ss_pred HHHHHHhHhHHHHHHHHhHhHHHHhhc---C--CCCCCcchhhhhhHH
Q 010787 419 WRRYSKKKLEESLRAEENRLQDALAKA---G--GSSPSLGATIYASRF 461 (501)
Q Consensus 419 ~~~~~~r~~~~~l~~aeery~~~~~~~---~--~~~~~~~~~~~As~~ 461 (501)
......+.......++++|+..++... + ....++++..+|+..
T Consensus 149 l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~l 196 (232)
T 1zyb_A 149 AQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCL 196 (232)
T ss_dssp HHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHh
Confidence 223344444455667888988887653 2 234557777887654
No 21
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.73 E-value=1.7e-17 Score=155.37 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=132.0
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechh
Q 010787 265 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEE 344 (501)
Q Consensus 265 ~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 344 (501)
.+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46889999999999999999999999999999999999999999999999999998667788776 499999999998
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 010787 345 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSK 424 (501)
Q Consensus 345 ~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~ 424 (501)
+ +.++++|.++|+++.|++++|.++++++|++....++...+. .....+
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~----------------~~~~~~ 129 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL----------------LKNSLT 129 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----------------HHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHH
Confidence 2 288999999999999999999999999999776555544332 223444
Q ss_pred hHhHHHHHHHHhHhHHHHhhcCC-----------CCCCcchhhhhhHH
Q 010787 425 KKLEESLRAEENRLQDALAKAGG-----------SSPSLGATIYASRF 461 (501)
Q Consensus 425 r~~~~~l~~aeery~~~~~~~~~-----------~~~~~~~~~~As~~ 461 (501)
+.......++++|+..++...+. ....+++..+|+-.
T Consensus 130 ~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~l 177 (220)
T 2fmy_A 130 IINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALML 177 (220)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh
Confidence 55555666777777776654321 34567777777654
No 22
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.72 E-value=5.6e-17 Score=141.54 Aligned_cols=122 Identities=30% Similarity=0.382 Sum_probs=108.1
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 46789999999999999999999999999999999999999999999999999999854 4567665 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQL 396 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l 396 (501)
+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++....+
T Consensus 82 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 82 ELSLF---DPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp GGGGT---SCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred hHHhc---CCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 99874 4433 388999999999999999999999999998765333
No 23
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.72 E-value=9.3e-17 Score=141.03 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=108.0
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 56789999999999999999999999999999999999999999999999999999854 4566655 58999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 400 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~ 400 (501)
+..++ .+.+ .+.++++|.++|+++.|++++|.++++++|++...+++...
T Consensus 89 ~~~~~---~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~ 138 (154)
T 2z69_A 89 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 138 (154)
T ss_dssp GGGGG---SSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhhc---cCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHH
Confidence 99984 4432 13899999999999999999999999999997765555543
No 24
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.71 E-value=5e-17 Score=152.35 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=131.7
Q ss_pred HhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhh
Q 010787 266 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEEL 345 (501)
Q Consensus 266 ~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~ 345 (501)
+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 4678999999999999999999999999999999999999999999999999998666788776 49999999999
Q ss_pred hhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHh
Q 010787 346 LTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKK 425 (501)
Q Consensus 346 l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r 425 (501)
.+ +.++++|.++|+++.|++++|.+++.++|++....++...+ ..+...++
T Consensus 76 -----~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~ 126 (222)
T 1ft9_A 76 -----MH--------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR----------------ALTSCMRT 126 (222)
T ss_dssp -----SC--------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH----------------HHHHHHHH
T ss_pred -----CC--------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHH
Confidence 11 38899999999999999999999999999876654444332 22334555
Q ss_pred HhHHHHHHHHhHhHHHHhhcCC-----------CCCCcchhhhhhHH
Q 010787 426 KLEESLRAEENRLQDALAKAGG-----------SSPSLGATIYASRF 461 (501)
Q Consensus 426 ~~~~~l~~aeery~~~~~~~~~-----------~~~~~~~~~~As~~ 461 (501)
.......++++|+..++...+. ....+++..+|+..
T Consensus 127 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~l 173 (222)
T 1ft9_A 127 IEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLI 173 (222)
T ss_dssp HHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh
Confidence 5666778889999988866552 23456777777644
No 25
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.70 E-value=2.6e-16 Score=145.87 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=123.2
Q ss_pred cccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhh
Q 010787 271 PLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWA 349 (501)
Q Consensus 271 ~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~ 349 (501)
++++.++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 4567789999999999999999999999999999999999999999999854 5677766 4899999999999985
Q ss_pred cCCC-CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhH
Q 010787 350 LDPQ-SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLE 428 (501)
Q Consensus 350 ~~~~-~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~ 428 (501)
.+. + +.++++|.++|+++.|++++|.+++.++|++...+++..... .+...++...
T Consensus 78 -~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------l~~~~~~~~~ 134 (210)
T 3ryp_A 78 -EEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR----------------LQVTSEKVGN 134 (210)
T ss_dssp -STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred -cCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 332 2 389999999999999999999999999999776555444322 1223344444
Q ss_pred HHHHHHHhHhHHHHhhcCC----------CCCCcchhhhhhHH
Q 010787 429 ESLRAEENRLQDALAKAGG----------SSPSLGATIYASRF 461 (501)
Q Consensus 429 ~~l~~aeery~~~~~~~~~----------~~~~~~~~~~As~~ 461 (501)
....++++|+..++..... ....+++..+|+..
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~l 177 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV 177 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHh
Confidence 5556677777766543221 12356677777654
No 26
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=2.6e-16 Score=145.49 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=122.6
Q ss_pred CcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCCC-
Q 010787 276 MDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQ- 353 (501)
Q Consensus 276 l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~- 353 (501)
++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++ .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 57899999999999999999999999999999999999999999854 5577766 5999999999999984 333
Q ss_pred ---CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHH
Q 010787 354 ---SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEES 430 (501)
Q Consensus 354 ---~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~ 430 (501)
+ +.++++|.++|+++.|++++|.++++++|++...+++...+.. .....+.....
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~----------------~~~~~~~~~l~ 133 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL----------------RKTTRKVGDLA 133 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHHHh
Confidence 2 3899999999999999999999999999997765555443221 12334444555
Q ss_pred HHHHHhHhHHHHh---hcCC-------CCCCcchhhhhhHH
Q 010787 431 LRAEENRLQDALA---KAGG-------SSPSLGATIYASRF 461 (501)
Q Consensus 431 l~~aeery~~~~~---~~~~-------~~~~~~~~~~As~~ 461 (501)
..++++|+..++. +.++ ....+++..+|+-.
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 174 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIV 174 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHh
Confidence 6677788877653 2221 33457777777654
No 27
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.70 E-value=2.1e-16 Score=136.20 Aligned_cols=121 Identities=27% Similarity=0.424 Sum_probs=106.4
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 263 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 263 ~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
..++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3568999999999999999999999999999999999999999999999999999998654 1 4789999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 400 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~ 400 (501)
+.+++ .+.+ +..+++|.++|+++.|++++|.++++++|++....++...
T Consensus 81 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~ 129 (138)
T 1vp6_A 81 EMALI---SGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 129 (138)
T ss_dssp HHHHH---HCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ehHhc---cCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99874 3333 3889999999999999999999999999997765555443
No 28
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.69 E-value=8.5e-17 Score=149.88 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=104.5
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhh
Q 010787 270 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTW 348 (501)
Q Consensus 270 i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~ 348 (501)
-|.|...++.....+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 47788889999999999999999999999999999999999999999999854 5677766 4999999999999984
Q ss_pred hcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhH
Q 010787 349 ALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLE 428 (501)
Q Consensus 349 ~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~ 428 (501)
....+ +.++++|+++|+++.|++++|.++++++|++...+++...+. ......+...
T Consensus 81 -~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~----------------~~~~~~~~~~ 137 (213)
T 1o5l_A 81 -SSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH----------------FRVVSEKLFF 137 (213)
T ss_dssp -SSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred -cCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 22212 389999999999999999999999999999876555544332 1123445555
Q ss_pred HHHHHHHhHhHHHHhhcC----CCCCCcchhhhhhHHHH
Q 010787 429 ESLRAEENRLQDALAKAG----GSSPSLGATIYASRFAA 463 (501)
Q Consensus 429 ~~l~~aeery~~~~~~~~----~~~~~~~~~~~As~~~~ 463 (501)
....++++|+..++...+ .....+++..+|+....
T Consensus 138 l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~ 176 (213)
T 1o5l_A 138 LTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGC 176 (213)
T ss_dssp HHCC-----------------------------------
T ss_pred HhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC
Confidence 566778888888877666 34556777777766544
No 29
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.68 E-value=2.9e-16 Score=138.35 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=104.5
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCe
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDF 340 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~ 340 (501)
....++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +|+. +..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 3456788999999999999999999999999999999999999999999999999999987 3332 578999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 341 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 341 fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|.++.
T Consensus 108 fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALI---YGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhh---cCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 9999985 3333 389999999999999999999999999997543
No 30
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.66 E-value=1.8e-15 Score=145.41 Aligned_cols=171 Identities=15% Similarity=0.211 Sum_probs=125.9
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCC
Q 010787 274 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDP 352 (501)
Q Consensus 274 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~ 352 (501)
..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+..++ .+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---CC
Confidence 4589999999999999999999999999999999999999999999854 5677766 5999999999999985 33
Q ss_pred C-CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHH
Q 010787 353 Q-SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESL 431 (501)
Q Consensus 353 ~-~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l 431 (501)
. + +.++++|+++|+++.|++++|.+++.++|++...+++...+. ......+......
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~----------------l~~~~~~~~~l~~ 187 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR----------------LQVTSEKVGNLAF 187 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHHHhc
Confidence 2 2 389999999999999999999999999999776554444322 2223344445555
Q ss_pred HHHHhHhHHHHhh---cCC-------CCCCcchhhhhhHH------HHHHHHHHhh
Q 010787 432 RAEENRLQDALAK---AGG-------SSPSLGATIYASRF------AANALRLIRR 471 (501)
Q Consensus 432 ~~aeery~~~~~~---~~~-------~~~~~~~~~~As~~------~~~~~~~~~~ 471 (501)
.++++|+..++.. .++ ...++++..+|+.. ++++++.+.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6677777765532 221 22356677777743 4445555543
No 31
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.66 E-value=2.6e-16 Score=137.87 Aligned_cols=62 Identities=15% Similarity=0.484 Sum_probs=56.7
Q ss_pred hhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 138 PKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTR 199 (501)
Q Consensus 138 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~ 199 (501)
...|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999998866543
No 32
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.65 E-value=9.9e-16 Score=150.23 Aligned_cols=135 Identities=18% Similarity=0.273 Sum_probs=118.9
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCC
Q 010787 245 NLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 324 (501)
Q Consensus 245 ~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~ 324 (501)
....++|...|.+...+...++++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999964 3
Q ss_pred ceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHH
Q 010787 325 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSK 394 (501)
Q Consensus 325 g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~ 394 (501)
|. .+..+.+|++|||.+++ .+.+ |.++++|.++|+++.|++++|.+++.++|.....
T Consensus 97 g~----~~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~ 153 (299)
T 3shr_A 97 GV----KLCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 153 (299)
T ss_dssp TE----EEEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CE----EEEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHH
Confidence 33 25899999999999884 4443 4899999999999999999999999999975543
No 33
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.65 E-value=9e-16 Score=144.13 Aligned_cols=57 Identities=18% Similarity=0.457 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 139 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQS 195 (501)
Q Consensus 139 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~ 195 (501)
..|..|+||+++||||+||||++|.|..++++++++|++|++++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999998864
No 34
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.64 E-value=2.4e-15 Score=131.45 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHhHhH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQT------YLQS----TTTRLEEMRVKRRDA 210 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~~ 210 (501)
|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.++. +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999986 3332 344555667788999
Q ss_pred HHHHHhcCCChhHHHH
Q 010787 211 EQWMAHRLLPDTLRER 226 (501)
Q Consensus 211 ~~~m~~~~lp~~L~~r 226 (501)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 35
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.63 E-value=2.7e-16 Score=135.27 Aligned_cols=92 Identities=7% Similarity=0.186 Sum_probs=55.4
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCC
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLP 220 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp 220 (501)
|..|+||+++|+|||||||++|.|..+++++++++++|++++|+++|.+++.+........+.++..+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88999999999999999999999999999999999999999999999999988765544433333222223333445666
Q ss_pred hhHHHHHHHHHH
Q 010787 221 DTLRERIRRYEQ 232 (501)
Q Consensus 221 ~~L~~rv~~y~~ 232 (501)
++.+..++++.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 36
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.63 E-value=1.5e-15 Score=127.92 Aligned_cols=60 Identities=13% Similarity=0.401 Sum_probs=55.9
Q ss_pred hHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 139 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 139 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
..|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++.+|.+++.+.+...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999876543
No 37
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.62 E-value=3.4e-15 Score=148.77 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=110.5
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 264 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 264 ~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
.++++++++|+.++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 46889999999999999999999999999999999999999999999999999999855 44554 3 58999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRF 402 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~ 402 (501)
+.+++ .+.+ ++++++|+++|+++.|++++|.+++ ++|.+...+++...+.
T Consensus 89 e~~l~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 89 EIALL---RDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHH---HTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHHhc---CCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 99985 3333 4899999999999999999999999 9999887666655543
No 38
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.62 E-value=2.2e-15 Score=143.80 Aligned_cols=166 Identities=12% Similarity=0.116 Sum_probs=127.3
Q ss_pred HhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechh
Q 010787 266 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEE 344 (501)
Q Consensus 266 ~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~ 344 (501)
++.++..+..++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 445555568899999999999999999999999999999999999999999999854 6677766 499999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 010787 345 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSK 424 (501)
Q Consensus 345 ~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~ 424 (501)
+ +.+. + .++++|+++|+++.|++++|.+++.++|++...+++...+... ...+
T Consensus 87 -~---l~~~-~------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~----------------~~~~ 139 (250)
T 3e6c_C 87 -L---YPTG-N------NIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVA----------------YYAR 139 (250)
T ss_dssp -C---SCCS-C------CEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHH----------------HHHH
T ss_pred -e---cCCC-C------ceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHH
Confidence 4 3333 3 8999999999999999999999999999977655555443221 2333
Q ss_pred hHhHHHHHHHHhHhHHHHh----hcC-------CCCCCcchhhhhhHH
Q 010787 425 KKLEESLRAEENRLQDALA----KAG-------GSSPSLGATIYASRF 461 (501)
Q Consensus 425 r~~~~~l~~aeery~~~~~----~~~-------~~~~~~~~~~~As~~ 461 (501)
+.......++++|+..++. ..+ .....+++..+|+..
T Consensus 140 ~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~l 187 (250)
T 3e6c_C 140 QVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEIT 187 (250)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHh
Confidence 3444445566777766552 222 124567777787655
No 39
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-16 Score=136.08 Aligned_cols=124 Identities=18% Similarity=0.260 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeC-CCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeee
Q 010787 252 KDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYT-EESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFF 330 (501)
Q Consensus 252 ~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~ 330 (501)
|+.|.+-......++++++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~--- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV--- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---
Confidence 3334433344556788999999999999999999999999999 999999999999999999999999986 44543
Q ss_pred eeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEE-EEcccceeeEecHHHHHHHHHHhHH
Q 010787 331 NSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTV-RALTEVEAFALMADDLKFVASQFRR 390 (501)
Q Consensus 331 ~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv-~A~~~~~l~~i~~~~f~~l~~~~p~ 390 (501)
..+++|++||+.++ +.+.+ +.+++ +|.++|+++.|++++|.++++++++
T Consensus 79 --~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 79 --ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp --EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred --EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 45889999999987 44443 36778 9999999999999999999877653
No 40
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=2.8e-15 Score=146.94 Aligned_cols=128 Identities=26% Similarity=0.435 Sum_probs=112.1
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC--CceeeeeeeeEeCCC
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN--GGRTGFFNSEYLGAG 338 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~--~g~~~~~~~~~l~~G 338 (501)
..+..+++++++|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++... +|++.+ +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998765 566655 5899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 339 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 339 ~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
++|||.++ +...+ +.++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 99999998 44443 489999999999999999999999999998765444443
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.59 E-value=1.4e-14 Score=141.22 Aligned_cols=127 Identities=22% Similarity=0.328 Sum_probs=109.1
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC-Cc-eeeeeeeeEeCCCC
Q 010787 262 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GG-RTGFFNSEYLGAGD 339 (501)
Q Consensus 262 ~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~-~g-~~~~~~~~~l~~G~ 339 (501)
....+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... +| ++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 44567788999999999999999999999999999999999999999999999999998543 33 3333 58999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
+|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 232 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 232 YFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred EecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 9999998 44443 489999999999999999999999999998766555443
No 42
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.59 E-value=1.8e-14 Score=136.94 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=121.5
Q ss_pred HHHHHHHHhhcc---eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhcCCC
Q 010787 278 EQLLDALCDRLK---PVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 353 (501)
Q Consensus 278 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~ 353 (501)
+++++.|..... .+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +.++++|++||+.+++ .+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 677888888888 99999999999999999999999999999985 45677766 4999999999999884 333
Q ss_pred CCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHHH
Q 010787 354 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRA 433 (501)
Q Consensus 354 ~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~~ 433 (501)
+. .+.++++|+++|+++.|++++|.+++.++|++...+++...+... ....+.......+
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~----------------~~~~~~~~l~~~~ 164 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRIL----------------QTEMMIETLAHRD 164 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HHHHHHHHHHCSS
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHHHHHhcCC
Confidence 21 135899999999999999999999999999987655554433211 1222333334445
Q ss_pred HHhHhHHHHhhc-----------CCCCCCcchhhhhhHH------HHHHHHHHh
Q 010787 434 EENRLQDALAKA-----------GGSSPSLGATIYASRF------AANALRLIR 470 (501)
Q Consensus 434 aeery~~~~~~~-----------~~~~~~~~~~~~As~~------~~~~~~~~~ 470 (501)
+++|+..++... +.....+++..+|+.. ++++++.+.
T Consensus 165 ~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 165 MGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 666665554321 1234567777887654 344555554
No 43
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=2.7e-14 Score=139.31 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=110.8
Q ss_pred HHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCC
Q 010787 260 RHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 339 (501)
Q Consensus 260 ~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~ 339 (501)
.+...++++++++|..++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|.. +..+++|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~~----~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCeE----EEEcCCCC
Confidence 34567789999999999999999999999999999999999999999999999999999987 3432 58999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 401 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~ 401 (501)
+||+.++ +.+.+ +.++++|.++|+++.|++++|.+++.++|.+....+....+
T Consensus 108 ~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999988 44443 48999999999999999999999999999877655555443
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=1.8e-14 Score=147.94 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeC
Q 010787 257 DIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLG 336 (501)
Q Consensus 257 ~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~ 336 (501)
+-......+.++++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++...+|++.+ +..+.
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEec
Confidence 3345566789999999999999999999999999999999999999999999999999999999877777766 58999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHH
Q 010787 337 AGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 393 (501)
Q Consensus 337 ~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~ 393 (501)
+|++||+.+++ ...+ |.++++|.++|+++.|++++|..++.++|....
T Consensus 215 ~G~~fGe~all---~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 215 NRGSFGELALM---YNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp SCCEECGGGGT---SCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CCCEEeeHHHh---cCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 99999999984 4443 489999999999999999999999999997543
No 45
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.57 E-value=5.4e-14 Score=133.16 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=122.9
Q ss_pred ccCcHHHHHHHHh--hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEE-eCCceeeeeeeeEeCCCCeechhhhhhhc
Q 010787 274 EKMDEQLLDALCD--RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWAL 350 (501)
Q Consensus 274 ~~l~~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~-~~~g~~~~~~~~~l~~G~~fGe~~l~~~~ 350 (501)
++++++.+..+.. .++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++ +|++||+..++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3678889998885 59999999999999999999999999999999985 45677766 4778 99999999884
Q ss_pred CCCCCCCCCCcceEEEEc-ccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHH
Q 010787 351 DPQSSSNLPISTRTVRAL-TEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEE 429 (501)
Q Consensus 351 ~~~~~~~~~~r~~tv~A~-~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~ 429 (501)
.+.+. .+.+++.|+ ++|+++.|++++|.+++.++|++...+++...+... ....+....
T Consensus 76 ~~~~~----~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----------------~~~~~~~~~ 135 (238)
T 2bgc_A 76 DTETS----VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVS----------------YSLAKFNDF 135 (238)
T ss_dssp TTCCB----SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHHHHH
T ss_pred cCCCc----CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 33310 014667777 599999999999999999999987765555443221 233344444
Q ss_pred HHHHHHhHhHHHHhh--------cCC---CCC-Ccchhhhhh-----H--HHHHHHHHHhh
Q 010787 430 SLRAEENRLQDALAK--------AGG---SSP-SLGATIYAS-----R--FAANALRLIRR 471 (501)
Q Consensus 430 ~l~~aeery~~~~~~--------~~~---~~~-~~~~~~~As-----~--~~~~~~~~~~~ 471 (501)
...++++|+..++.. .|+ ... .+++..+|+ | -++++++.+.+
T Consensus 136 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 136 SINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp HTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 556667777666532 121 234 567777775 3 55666666653
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.4e-14 Score=137.36 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=104.7
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 262 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 262 ~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
++..+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++ + +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456778899999999999999999999999999999999999999999999999999876654 2 5899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHH
Q 010787 342 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLH 392 (501)
Q Consensus 342 Ge~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~ 392 (501)
||.+++ ...+ |.++++|.++|+++.|++++|.+++..+|++.
T Consensus 197 Ge~~~~---~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 197 GEVALL---NDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp CHHHHH---HTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred cHHHHh---CCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 999985 3333 48999999999999999999999999999854
No 47
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.5e-15 Score=138.55 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=104.6
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 263 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 263 ~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
..++++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~--~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN--DNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST--TSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC--CEE----EEecCCCCeee
Confidence 456889999999999999999999999999999999999999999999999999999863 332 48999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHH
Q 010787 343 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQL 396 (501)
Q Consensus 343 e~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l 396 (501)
+.+++ ...+ +.++++|.++|+++.|++++|.+++.++|..+....
T Consensus 79 e~~l~---~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (246)
T 3of1_A 79 ELALM---YNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123 (246)
T ss_dssp HHHHH---HTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHS
T ss_pred hhHHh---cCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHH
Confidence 99985 3333 389999999999999999999999999997554333
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=147.32 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=110.6
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC-Cce-eeeeeeeEeCCC
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGR-TGFFNSEYLGAG 338 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~-~g~-~~~~~~~~l~~G 338 (501)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... +|+ +.+ +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 456678899999999999999999999999999999999999999999999999999998653 333 333 5899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHH
Q 010787 339 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 399 (501)
Q Consensus 339 ~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~ 399 (501)
++|||.+++ ...+ |.++++|.++|+++.|++++|.+++..+|++..+.+++.
T Consensus 322 d~fGe~all---~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---LNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---SCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---CCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999984 4443 489999999999999999999999999998766555443
No 49
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.55 E-value=2.6e-14 Score=123.60 Aligned_cols=59 Identities=15% Similarity=0.472 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999988765443
No 50
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=143.53 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=108.5
Q ss_pred HHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCC
Q 010787 260 RHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 339 (501)
Q Consensus 260 ~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~ 339 (501)
.....++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++. +|+. +..+++|+
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~G~ 198 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISEGG 198 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEESSC
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCCCC
Confidence 34557889999999999999999999999999999999999999999999999999999986 3332 57899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRH 398 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~ 398 (501)
+||+.+++ .+.+ |.++++|.++|+++.|++++|.+++.++|....+.+..
T Consensus 199 ~fGe~all---~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~ 248 (381)
T 4din_B 199 SFGELALI---YGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEE 248 (381)
T ss_dssp CBCGGGGT---SCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHh---cCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHH
Confidence 99999984 4443 48999999999999999999999999999866544443
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.50 E-value=3.4e-14 Score=145.87 Aligned_cols=121 Identities=12% Similarity=0.225 Sum_probs=104.5
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCC-------ceeeeeeeeEe
Q 010787 263 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG-------GRTGFFNSEYL 335 (501)
Q Consensus 263 ~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~-------g~~~~~~~~~l 335 (501)
+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.... |++.+ +..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEe
Confidence 44578889999999999999999999999999999999999999999999999999985433 55554 5999
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHH
Q 010787 336 GAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSK 394 (501)
Q Consensus 336 ~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~ 394 (501)
++|++|||.+++ ...+ |.++++|.++|+++.|++++|.+++..+|++..+
T Consensus 343 ~~G~~fGE~all---~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 343 FRGQYFGELALV---TNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp CTTCEESGGGGT---CCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCCCEecHHHHh---CCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 999999999984 4443 4899999999999999999999999999986543
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.48 E-value=1.2e-13 Score=144.09 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=116.8
Q ss_pred ccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCce--
Q 010787 250 LPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGR-- 326 (501)
Q Consensus 250 Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~-- 326 (501)
.|+..|.+.......+.++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++.. .+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 5677777777788889999999999999999999999999999999999999999999999999999999864 3443
Q ss_pred eeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHH
Q 010787 327 TGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQL 396 (501)
Q Consensus 327 ~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l 396 (501)
+.+ +..+++|++||+.+ + .. .+ +.++++|.++|+++.|++++|.+++.++|++...++
T Consensus 107 ~~~--~~~~~~G~~fGe~~-l--~~-~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 107 AVT--ICTLGIGTAFGESI-L--DN-TP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp CEE--EEEECTTCEECGGG-G--GT-CB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred ceE--EEEccCCCCcchhh-h--CC-CC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 233 59999999999988 5 22 22 489999999999999999999999999998654433
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.46 E-value=1.9e-13 Score=142.60 Aligned_cols=120 Identities=11% Similarity=0.167 Sum_probs=103.4
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcce-eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCC
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKP-VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 339 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~ 339 (501)
+...+.++++++|..++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+++ + +..+++|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~---~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG---V--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE---E--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe---e--EEEecCCC
Confidence 345678999999999999999999999985 49999999999999999999999999999875432 2 58999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEcc-cceeeEecHHHHHHHHHHhHHHHHH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALT-EVEAFALMADDLKFVASQFRRLHSK 394 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~-~~~l~~i~~~~f~~l~~~~p~~~~~ 394 (501)
+||+.++ +...+ +.++++|.+ +|+++.|++++|.+++.++|++..+
T Consensus 408 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~ 454 (469)
T 1o7f_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVR 454 (469)
T ss_dssp EECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---
T ss_pred EEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHH
Confidence 9999998 44443 489999998 7999999999999999999986543
No 54
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.45 E-value=3e-13 Score=141.70 Aligned_cols=61 Identities=11% Similarity=0.244 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 138 PKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 138 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
+..|..|+||+++||||+||||+.|.+..++++++++|++|++++++.+|.+.+.++....
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999999987776554
No 55
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.44 E-value=4.4e-13 Score=122.73 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=104.3
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 010787 291 VLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 369 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~ 369 (501)
+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+ ++ +.+.+ +.++++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 57999999999999999999999999999854 5677766 599999999999 87 44443 389999999
Q ss_pred cceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHHHHhhcCC--
Q 010787 370 EVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQDALAKAGG-- 447 (501)
Q Consensus 370 ~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~~~~~~~~-- 447 (501)
+|+++.|++++|. |++...+++...+. .+....+.......++++|+..++.....
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~~----------------l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~ 127 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLARQ----------------MRRVQAYEAHLQTGELRARIARYLLFLADTP 127 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHHH----------------HHHHHHHHHHHTSSCHHHHHHHHHHHHTTST
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999999998 77655444433322 22233444445566778888777654221
Q ss_pred --------CCCCcchhhhhhHH------HHHHHHHHh
Q 010787 448 --------SSPSLGATIYASRF------AANALRLIR 470 (501)
Q Consensus 448 --------~~~~~~~~~~As~~------~~~~~~~~~ 470 (501)
....+++..+|+.. ++++++.+.
T Consensus 128 ~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 128 LSARDRQGIYVTVSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp TEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23446677777543 344555554
No 56
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.39 E-value=1.4e-13 Score=112.25 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+..
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998886544
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.39 E-value=3.8e-12 Score=105.57 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=52.5
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.+++.++...
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999998875443
No 58
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.37 E-value=1.1e-12 Score=120.58 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=100.8
Q ss_pred HHhhcceeeeCCCCEEEccCCCC--CeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCC
Q 010787 284 LCDRLKPVLYTEESYIVREGDPV--DEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPI 360 (501)
Q Consensus 284 l~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~ 360 (501)
+...++.+.|++|++|+++|+++ +.+|||.+|.|+++.. .+|++.+ +..+++|++||+ +++ .+.+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CCCC------
Confidence 34677899999999999999999 9999999999999854 5677766 599999999999 764 2332
Q ss_pred cceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHH
Q 010787 361 STRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQD 440 (501)
Q Consensus 361 r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~ 440 (501)
+.++++|+++|+++.| +++|. |++...+++.... .......+.......++++|+..
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~----------------~l~~~~~~~~~~~~~~~~~Rl~~ 125 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ----------------GLAEAYRRIERLATQRLKNRMAA 125 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 3889999999999999 98886 7655544433322 12233444455566678888887
Q ss_pred HHhhcC----------CCCCCcchhhhhhHH
Q 010787 441 ALAKAG----------GSSPSLGATIYASRF 461 (501)
Q Consensus 441 ~~~~~~----------~~~~~~~~~~~As~~ 461 (501)
++.... .....+++..+|+..
T Consensus 126 ~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 156 (202)
T 2zcw_A 126 ALLELSETPLAHEEEGKVVLKATHDELAAAV 156 (202)
T ss_dssp HHHHHTTSTTEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcEEccCCCHHHHHHHh
Confidence 765432 123446677777643
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.37 E-value=1.9e-12 Score=147.39 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCC---ceeeee
Q 010787 254 LRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG---GRTGFF 330 (501)
Q Consensus 254 Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~---g~~~~~ 330 (501)
-|.+--.+.....|+++++|+++++..+.+|+..++.+.+++|++|+++||.++.+|+|.+|.|.++..+. +.+..
T Consensus 31 ~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~- 109 (999)
T 4f7z_A 31 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVT- 109 (999)
T ss_dssp SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEE-
T ss_pred cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCcee-
Confidence 34333334445678999999999999999999999999999999999999999999999999999986422 22322
Q ss_pred eeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHH
Q 010787 331 NSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLH 392 (501)
Q Consensus 331 ~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~ 392 (501)
+..+++|+.||| +++ ...+ |+++++|.++|++++|++++|..++.++|+..
T Consensus 110 -v~~l~~G~sFGE-all---~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 110 -ICTLGIGTAFGE-SIL---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp -EEEEETTCEECG-GGG---GTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -EEEecCCcchhh-hhc---cCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 589999999999 553 3333 49999999999999999999999999999743
No 60
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.35 E-value=2.1e-12 Score=140.21 Aligned_cols=133 Identities=11% Similarity=0.139 Sum_probs=110.7
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcc-eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEe
Q 010787 244 ENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLK-PVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 322 (501)
Q Consensus 244 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~ 322 (501)
..++... +..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 3445433 34455444555678899999999999999999999998 789999999999999999999999999999875
Q ss_pred CCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc-cceeeEecHHHHHHHHHHhHHH
Q 010787 323 NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT-EVEAFALMADDLKFVASQFRRL 391 (501)
Q Consensus 323 ~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~-~~~l~~i~~~~f~~l~~~~p~~ 391 (501)
+. .+ +..+++|++||+.+++ .+.+ +.++++|.+ +|+++.|++++|.++++++|.+
T Consensus 91 g~---~i--l~~l~~Gd~fGe~al~---~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 GK---GV--VCTLHEGDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp TT---EE--EEEEETTCEECHHHHH---HTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred CC---EE--EEEeCCCCEeehHHHh---CCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 32 23 5899999999999885 3332 389999999 5999999999999999998874
No 61
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.34 E-value=8.2e-12 Score=100.39 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQS 195 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~ 195 (501)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7889999999999999999999999999999999999999999999999988764
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.29 E-value=2.4e-11 Score=94.46 Aligned_cols=53 Identities=11% Similarity=0.355 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 193 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il 193 (501)
|..|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998865
No 63
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.26 E-value=2.3e-11 Score=138.39 Aligned_cols=115 Identities=11% Similarity=0.158 Sum_probs=100.0
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceee-eCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCC
Q 010787 261 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVL-YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 339 (501)
Q Consensus 261 ~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~ 339 (501)
+...+.+.+++.|.+++......|+..+.... +++|++|++|||.++.+|||.+|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 44567889999999999999999999999765 4779999999999999999999999998754433 58899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcceEEEEccc-ceeeEecHHHHHHHHHHhH
Q 010787 340 FCGEELLTWALDPQSSSNLPISTRTVRALTE-VEAFALMADDLKFVASQFR 389 (501)
Q Consensus 340 ~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~-~~l~~i~~~~f~~l~~~~p 389 (501)
+|||.++ +...| |.+|++|.++ |++++|++++|.+++.+-.
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999998 56654 3999999985 9999999999999997643
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.18 E-value=1.4e-12 Score=115.94 Aligned_cols=60 Identities=15% Similarity=0.474 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTR 199 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~ 199 (501)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477799999999999999999999999999999999999999999999999888755443
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.10 E-value=2.4e-10 Score=111.02 Aligned_cols=55 Identities=7% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 194 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~ 194 (501)
.|..|+||+++|+|||||||++|.+...++++++.+++|++++|+++|.+...+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999998876663
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.08 E-value=1.7e-10 Score=113.21 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
.|..|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+...+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999998877643
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.00 E-value=1.1e-09 Score=105.86 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999888653
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.91 E-value=5.4e-09 Score=102.19 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
.|..|+||+++|||||||||+.|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999877643
No 69
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.82 E-value=1.8e-08 Score=98.51 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhccccCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETST--YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 197 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~--~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~ 197 (501)
+..++||++.|+|||||||+.|+ +..-++++++.+++|+++.|+.+|.+..-+..-.
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 56789999999999999999997 6778899999999999999999998876665433
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.81 E-value=1.6e-08 Score=107.82 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGN-MQTYL 193 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~-i~~il 193 (501)
|+.|+||+++|+|||||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999998 55444
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=96.85 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEI------CFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~------~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
|+.|+||+++|+|||||||++|.+...+ +++++++++|+.+++++++.+++.+.....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999988886 599999999999999999999988765543
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.72 E-value=5.7e-08 Score=92.43 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhhccccCCccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVW-------EICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~-------E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
|+.|+||+++|+|||||||++|.+.. -++++++++++|+++++++++.+++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999885 399999999999999999999999877543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.72 E-value=1.9e-08 Score=95.71 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 194 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~ 194 (501)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999986654
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.65 E-value=1.3e-07 Score=92.53 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhhhccccCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETST--YVWEICFAVFISISGLVLFSFLIGNMQTYLQS 195 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~--~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~ 195 (501)
.+..++||++.|+|||||||+.|+ +..-++++.+.+++|+++.|..+|.+..-+..
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999864 78899999999999999999999987766543
No 75
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.51 E-value=1.3e-07 Score=91.69 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHhhhhhccccCC-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 137 FPKKFFYCFWWGLRNLSSLGQN-LET-STYVWE----ICFAVFISISGLVLFSFLIGNMQTYLQSTTT 198 (501)
Q Consensus 137 ~~~~Yl~slYwa~~t~ttvGyG-di~-p~~~~E----~~~~i~~~i~g~~~fa~iig~i~~il~~~~~ 198 (501)
.+..+..|+||++.|+||+||| |+. |.+..- ..|.+++++.|.++.+..+|.+.+-+.....
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555788999999999999999 986 765543 7888999999999999999999887765443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.46 E-value=9.9e-09 Score=102.05 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 141 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 196 (501)
Q Consensus 141 Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~ 196 (501)
|..|+||+++|+||+||||++|.|..+++++++++++|+++++++++.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999999999999887643
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.20 E-value=0.023 Score=52.40 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhhhhhccccCCcccc----Cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010787 138 PKKFFYCFWWGLRNLSSLGQNLETS----TYVWE-ICFAVFISISGLVLFSFLIGNMQTYL 193 (501)
Q Consensus 138 ~~~Yl~slYwa~~t~ttvGyGdi~p----~~~~E-~~~~i~~~i~g~~~fa~iig~i~~il 193 (501)
++..-.|++|.+.++||.||+|+.. .+..- ..|..++.+.+.++....++.+.+-+
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f 223 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVV 223 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447789999999999999998721 11112 23334444444555566666555443
No 78
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=83.14 E-value=4.5 Score=36.69 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=53.5
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
.+....+.||+.+-..-.+.+.+++|++|.+++...+ ++ ..+.+||++= +.+. -...++
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~--~~-----~~l~~Gd~~~-------~p~~-------~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIEN--NK-----KTISNGDFLE-------ITAN-------HNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESS--CE-----EEEETTEEEE-------ECSS-------CCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECC--EE-----EEECCCCEEE-------ECCC-------CCEEEE
Confidence 3455678999999877778999999999999998743 32 6789998763 3333 267889
Q ss_pred EcccceeeEe
Q 010787 367 ALTEVEAFAL 376 (501)
Q Consensus 367 A~~~~~l~~i 376 (501)
|.+++.++.+
T Consensus 97 a~~~~~~l~i 106 (227)
T 3rns_A 97 ARDNLKLIEI 106 (227)
T ss_dssp ESSSEEEEEE
T ss_pred ECCCcEEEEE
Confidence 9999999977
No 79
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=80.56 E-value=8.1 Score=30.62 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=47.3
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
+....++||..+-..-....++++|++|.+++... +++ ..+.+||.+- +.+. -...+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~-------ip~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GAQ-----RRLHQGDLLY-------LGAG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TEE-----EEECTTEEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CEE-----EEECCCCEEE-------ECCC-------CcEEEEe
Confidence 34557788888766555667999999999998763 232 6899999773 3333 1567788
Q ss_pred cccceeeE
Q 010787 368 LTEVEAFA 375 (501)
Q Consensus 368 ~~~~~l~~ 375 (501)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 80
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=80.47 E-value=5.4 Score=31.42 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=42.3
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEccc
Q 010787 291 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTE 370 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~ 370 (501)
..+.+|..+-.......++++|++|.+.+... ++ ...+.+||.+= +.+.. ...+.+.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~--~~-----~~~l~~Gd~i~-------i~~~~-------~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITFD--DQ-----KIDLVPEDVLM-------VPAHK-------IHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEET--TE-----EEEECTTCEEE-------ECTTC-------CBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEEC--CE-----EEEecCCCEEE-------ECCCC-------cEEEEeCCC
Confidence 34566665544445567999999999998663 33 26799999773 33331 445666677
Q ss_pred ceeeEe
Q 010787 371 VEAFAL 376 (501)
Q Consensus 371 ~~l~~i 376 (501)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 776654
No 81
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=76.38 E-value=9.1 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc-cceeeEecHH
Q 010787 305 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT-EVEAFALMAD 379 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~-~~~l~~i~~~ 379 (501)
+.++++++++|.+.+...++|+... ..+++||+|= +.+. - ..+-++.+ +|..+.+.+.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~---v~l~eGE~f~-------lP~g-v------pH~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRER---ADLKEGDIFL-------LPPH-V------RHSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEE---EEECTTCEEE-------ECTT-C------CEEEEBCCTTCEEEEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCceee---EEECCCCEEE-------eCCC-C------CcCccccCCCCEEEEEEeC
Confidence 4679999999999998766564333 6899999983 2222 1 34455555 6666666543
No 82
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=75.79 E-value=15 Score=28.75 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=45.8
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
+....+.||..+-.--....++++|++|.+.+.. +++. ..+.+||.+= +.+. -...+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~-------ip~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI-----KVLTAGDSFF-------VPPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE-----EEECTTCEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE-----EEeCCCCEEE-------ECcC-------CceeeEe
Confidence 3445677887654333446789999999999876 3332 6899999862 3333 1556777
Q ss_pred cccceeeEe
Q 010787 368 LTEVEAFAL 376 (501)
Q Consensus 368 ~~~~~l~~i 376 (501)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778887766
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=72.92 E-value=4.8 Score=43.98 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhhccccCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 010787 140 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 216 (501)
Q Consensus 140 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~ 216 (501)
....+++|++.++++.| ++..|.+...+++.+++++++.++.+...+++++++..- .+...++.+++....
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~-----~~~~~I~s~~dL~~~ 633 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE-----RMVSPIESAEDLSKQ 633 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCCCSSHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccCCCCCCHHHHhhC
Confidence 45678999999999988 788999999999999999999999999999999998742 223334445554443
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=72.54 E-value=16 Score=28.44 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
+....+.||..+-..-....++++|++|.+.+... ++. ..+.+||++- +.+. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~~-------ip~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID--QET-----YRVAEGQTIV-------MPAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEET--TEE-----EEEETTCEEE-------ECTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC--CEE-----EEECCCCEEE-------ECCC-------CCEEEEE
Confidence 34456778877644334467999999999998753 332 5789999873 3333 1556777
Q ss_pred cccceeeEe
Q 010787 368 LTEVEAFAL 376 (501)
Q Consensus 368 ~~~~~l~~i 376 (501)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777777654
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=72.10 E-value=9.6 Score=30.62 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+.||..+-.. ...+++++|++|.+++.. +|++ ..+++||++-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 3456777765443 367899999999999976 3443 6799999873
No 86
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=70.16 E-value=13 Score=32.12 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=49.9
Q ss_pred HHHHHHhhcce----eeeCCCCEEEc--cC---------CCCCeEEEEEeeEEEEEEeCCc----eeeeeeeeEeCCCCe
Q 010787 280 LLDALCDRLKP----VLYTEESYIVR--EG---------DPVDEMLFIMRGKLLTITTNGG----RTGFFNSEYLGAGDF 340 (501)
Q Consensus 280 ~l~~l~~~l~~----~~~~~ge~I~~--~G---------d~~~~lyfI~~G~v~~~~~~~g----~~~~~~~~~l~~G~~ 340 (501)
-+.+....+++ +....+++++. .| ++.++++++++|.+.+...++| +-. ...+++||+
T Consensus 13 wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~---dv~i~eGdm 89 (176)
T 1zvf_A 13 WLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFI---DIIINEGDS 89 (176)
T ss_dssp HHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEE---EEEECTTEE
T ss_pred HHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCccccee---eEEECCCCE
Confidence 34555556666 43333555532 22 3456999999999999866655 221 268999998
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHH
Q 010787 341 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMAD 379 (501)
Q Consensus 341 fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~ 379 (501)
|= +.+.. ..+-++..++..+.+.+.
T Consensus 90 fl-------lP~gv-------pHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 90 YL-------LPGNV-------PHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp EE-------ECTTC-------CEEEEECTTCEEEEEEEC
T ss_pred EE-------cCCCC-------CcCCcccCCcEEEEEEec
Confidence 83 22221 344445567777776553
No 87
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=68.07 E-value=17 Score=30.12 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCCCeEEEEEeeEEEEEEeCCc--eeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHH
Q 010787 303 GDPVDEMLFIMRGKLLTITTNGG--RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMAD 379 (501)
Q Consensus 303 Gd~~~~lyfI~~G~v~~~~~~~g--~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~ 379 (501)
-+..|++|+|++|.+.+...+++ .... ....+.+|+++-- |+.- ...-.|.++|.++.|...
T Consensus 47 H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvV--------PkGv------eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 47 HHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNV--------PAEC------WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp ESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEE--------CTTC------EEEEEECTTCEEEEEEES
T ss_pred CCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEe--------CCCc------cCcccCCCceEEEEEEeC
Confidence 35578999999999999755321 0001 1368899998732 2211 455677788888887654
No 88
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=67.25 E-value=18 Score=28.69 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=48.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
+....+.||..+-..-....++++|++|.+.+... ++ ...+.+||++- +.+. ....+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 101 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EE-----TRVLRPGMAYT-------IPGG-------VRHRART 101 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TE-----EEEECTTEEEE-------ECTT-------CCEEEEC
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CE-----EEEeCCCCEEE-------ECCC-------CcEEeEE
Confidence 34556788887654444567999999999998763 33 26889999763 2322 1455666
Q ss_pred ccc-ceeeEe---cHHHHHHHH
Q 010787 368 LTE-VEAFAL---MADDLKFVA 385 (501)
Q Consensus 368 ~~~-~~l~~i---~~~~f~~l~ 385 (501)
.++ +.++.+ .++++...+
T Consensus 102 ~~~~~~~l~v~~p~~~d~~~~~ 123 (126)
T 4e2g_A 102 FEDGCLVLDIFSPPREDYARMA 123 (126)
T ss_dssp CTTCEEEEEEEESCCHHHHHHH
T ss_pred CCCCEEEEEEECCCCcchhhhh
Confidence 666 655533 234554443
No 89
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=66.29 E-value=15 Score=34.24 Aligned_cols=59 Identities=8% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEecHH
Q 010787 304 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMAD 379 (501)
Q Consensus 304 d~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~ 379 (501)
+..+++|++++|.+.+-..++|+-.. ..+++|++|= -|... ..+=++-++|..++|.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~~---V~i~eGemfl--------lP~gv------~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHRD---VVIRQGEIFL--------LPARV------PHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEEE---EEECTTEEEE--------ECTTC------CEEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCceee---EEECCCeEEE--------eCCCC------CcCCcccCCeEEEEEeec
Confidence 45689999999999997766564322 6899999883 22211 455566778888888754
No 90
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=60.45 E-value=29 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=33.6
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||+.-.. ....++++|++|.+.+...+ +. ...+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-GK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-CC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-CC-----EEEECCCCEEE
Confidence 33556778876544 44689999999999987642 33 26899999873
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=59.58 E-value=23 Score=31.93 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=48.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
+....+.||..+-..-.+.+++++|++|.+++... |++ ..+.+||.+= +.+. ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~~-----~~l~~Gd~i~-------ip~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GKP-----FIVKKGESAV-------LPAN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TEE-----EEEETTEEEE-------ECTT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CEE-----EEECCCCEEE-------ECCC-------CcEEEEe
Confidence 45667899998765555677899999999998763 332 6789999763 3332 1566788
Q ss_pred -cccceeeEe
Q 010787 368 -LTEVEAFAL 376 (501)
Q Consensus 368 -~~~~~l~~i 376 (501)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 92
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=57.52 E-value=16 Score=28.07 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred ceeeeCCCCEEEcc--CCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVRE--GDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||..+-.. -.. ..++++|++|.+.+... ++ ...+.+||++
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 34567888876543 333 67999999999998763 23 2678999977
No 93
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=57.44 E-value=24 Score=30.71 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=31.9
Q ss_pred eeeCCCCEEE---ccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 291 VLYTEESYIV---REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 291 ~~~~~ge~I~---~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
..+.||...- .......++++|++|.+.+...+++... ...+.+||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3556666443 1223447999999999998875432221 26899999873
No 94
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=56.44 E-value=15 Score=29.23 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=32.5
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||..+-..-.. ..++++|++|.+.+...+ +++ ..+++||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-~~~-----~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN-GIV-----THLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST-TCE-----EEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC-CeE-----EEeCCCCEE
Confidence 444567888776544344 368999999999986522 332 578999976
No 95
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=55.83 E-value=20 Score=26.93 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=31.9
Q ss_pred ceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||..+-..-.. ..++++|++|.+.+... ++ ...+.+||++
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 34567788776433333 35799999999998763 23 2688999977
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=55.60 E-value=13 Score=32.18 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=35.5
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||......-..++++++|++|.+++...+.+... ...+++||++-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44567788877654433467999999999998644222222 36899999873
No 97
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=53.19 E-value=11 Score=29.23 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEccccee
Q 010787 294 TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEA 373 (501)
Q Consensus 294 ~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l 373 (501)
.+|+.....-+...++++|++|.+.+...++ + ...+.+||.+- +.+.. ...+.+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADG-G-----SMTIREGEMAV-------VPKSV-------SHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTS-C-----EEEECTTEEEE-------ECTTC-------CEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCC-c-----EEEECCCCEEE-------ECCCC-------cEeeEeCCCeEE
Confidence 4554332332223899999999999876541 2 26899999873 33331 444555677888
Q ss_pred eEecHHHH
Q 010787 374 FALMADDL 381 (501)
Q Consensus 374 ~~i~~~~f 381 (501)
+.++....
T Consensus 96 l~i~~~~~ 103 (107)
T 2i45_A 96 VLIELSDP 103 (107)
T ss_dssp EEEECC--
T ss_pred EEEECCCc
Confidence 87765443
No 98
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=52.49 E-value=34 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEec
Q 010787 305 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALM 377 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~ 377 (501)
..+++++|++|.+++.. +|+. ..+++||.+= +.+. ......+.++++++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~~-----~~l~~GD~i~-------iP~G-------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGRK-----VSASSGELIF-------IPKG-------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTEE-----EEEETTCEEE-------ECTT-------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCEE-----EEEcCCCEEE-------ECCC-------CEEEEEeCCCEEEEEEE
Confidence 35789999999999986 4443 6899999873 3322 13444455677666554
No 99
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=52.18 E-value=45 Score=25.32 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=41.3
Q ss_pred eeeeCCCCEEEccCCCC-CeE-EEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 010787 290 PVLYTEESYIVREGDPV-DEM-LFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 367 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~-~~l-yfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A 367 (501)
...+.+|..+-..-... .++ ++|++|.+.+...+ |+ ...+.+||++- +.+. -...+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLV-------APIS-------TPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEE-------EETT-------SCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEE-------eCCC-------CcEEEEE
Confidence 34567887664333332 466 89999999887532 22 26799999763 2322 1456677
Q ss_pred cccceeeEe
Q 010787 368 LTEVEAFAL 376 (501)
Q Consensus 368 ~~~~~l~~i 376 (501)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777665543
No 100
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=51.47 E-value=17 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=30.8
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 292 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 292 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...||..-+.. +..++++.|++|.+.+...+ |.. ..+++||.|-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~~-----~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-ADP-----VKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CCC-----EEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-CeE-----EEECCCCEEE
Confidence 44566554443 33459999999999987654 442 6899999884
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=51.13 E-value=12 Score=30.33 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.3
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 292 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 292 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...||..-....+ .+++++|++|.+.+... +|.. ..+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~-----~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV-----HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE-----EEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE-----EEECCCCEEE
Confidence 4456665544322 37999999999998764 3432 5799999874
No 102
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=50.04 E-value=35 Score=25.58 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=34.9
Q ss_pred CeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcccceeeEec
Q 010787 307 DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALM 377 (501)
Q Consensus 307 ~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~~~l~~i~ 377 (501)
.++++|++|.+.+...+ + ...+.+||++- +.+.. ...+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~~--~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRD--Q-----NITLQAGEMYV-------IPKGV-------EHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECSS--C-----EEEEETTEEEE-------ECTTC-------CBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECC--E-----EEEEcCCCEEE-------ECCCC-------eEeeEcCCCCEEEEEE
Confidence 79999999999886543 2 25788998762 33331 4456666788888775
No 103
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=48.26 E-value=28 Score=31.22 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=28.7
Q ss_pred eCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 293 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 293 ~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
+.||..+=.--.+.+++|+|++|.++....++ + ...+++||.+
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v 181 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTR 181 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEE
Confidence 34443332223456799999999998876533 2 2689999977
No 104
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=47.88 E-value=25 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=31.9
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||..+-..-....++++|++|.+.+...+ + ...+.+||++
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~--~-----~~~l~~Gd~i 104 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD--R-----VEPLTPLDCV 104 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT--E-----EEEECTTCEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC--E-----EEEECCCCEE
Confidence 34456677655433345689999999999987533 2 2678999977
No 105
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=47.78 E-value=27 Score=30.69 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=46.0
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
.+....+.||..+-.....+.++.+|++|.+. .++ ..+.+||++= ..+. ...+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~---de~--------~~~~~Gd~~~-------~p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR---DET--------DRFGAGDIEI-------ADQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE---CSS--------SEEETTCEEE-------ECSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE---CCc--------EEECCCeEEE-------eCcC-------CccCCE
Confidence 45677889999998888888999999999965 211 4688998763 2322 144455
Q ss_pred E--cccceeeEe
Q 010787 367 A--LTEVEAFAL 376 (501)
Q Consensus 367 A--~~~~~l~~i 376 (501)
+ .+.|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 677777764
No 106
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=47.28 E-value=13 Score=28.28 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=30.9
Q ss_pred eeeeCCCCEEEccCCCCC-eEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 290 PVLYTEESYIVREGDPVD-EMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+.||...-..-.... ++++|++|.+++...++.+ ...+.+||.+-
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEE
Confidence 456677765422222333 5999999999987643212 26899999873
No 107
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=47.05 E-value=20 Score=21.32 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHhH
Q 010787 408 RSWAACFIQAAWRRYSKKK 426 (501)
Q Consensus 408 ~~~~~~~~q~~~~~~~~r~ 426 (501)
+.+.+.+||.+|+++..+.
T Consensus 5 Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688999999999887653
No 108
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=44.03 E-value=23 Score=20.33 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHhH
Q 010787 408 RSWAACFIQAAWRRYSKKK 426 (501)
Q Consensus 408 ~~~~~~~~q~~~~~~~~r~ 426 (501)
+.+++.+||.+|+++..+.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5678899999999887643
No 109
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=43.53 E-value=22 Score=30.74 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=30.5
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||...-.--....++.+|++|.+++...+ |++ ..+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~-----~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK-----RTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE-----EEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE-----EEECCCCEE
Confidence 34456666543222233457889999999987643 232 679999998
No 110
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.21 E-value=36 Score=33.57 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=33.4
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||+.+-..-....++|||++|....... +|++ ..+++||++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~~-----~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHK-----VELGANDFV 172 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEE-----EEECTTCEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCEE-----EEEcCCCEE
Confidence 5567788887755444556899999998755444 3443 679999988
No 111
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=41.86 E-value=23 Score=30.26 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=30.8
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+-..-....++++|++|.+.+... ++ ...+.+||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~--g~-----~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVG--RA-----VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEET--TE-----EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 345567665543334457899999999998653 33 2688999977
No 112
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=41.04 E-value=67 Score=26.10 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=30.5
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+.||..-.. ...+++++|++|.+.+... |++ ..+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~~-----~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GET-----MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TEE-----EEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CEE-----EEECCCcEEE
Confidence 345667743222 2367999999999998764 443 5799999874
No 113
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=40.47 E-value=26 Score=27.34 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=28.7
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeee-EeCCCCee
Q 010787 291 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSE-YLGAGDFC 341 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~-~l~~G~~f 341 (501)
..+.||..+-..-....++++|++|.+.+...+ +. . .+.+||++
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~~-----~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED--QE-----PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETT--SC-----CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC--EE-----EEEeCCCCEE
Confidence 345566544222234568999999999987633 22 4 78899976
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=40.42 E-value=24 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=30.0
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 291 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 291 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..+.||..+-..-....++++|++|.+++... ++ ...+.+||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~--g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLVG--ET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEET--TE-----EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 34566665433334457899999999998753 33 2678899877
No 115
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=39.69 E-value=30 Score=27.58 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=30.2
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+-.--....++++|++|.+.+...+ + ...+.+||++
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~-----~~~l~~Gd~i 96 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQ--G-----EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECSS--C-----EEEEETTEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEECC--E-----EEEECCCCEE
Confidence 3455666655333334679999999999887542 2 2578899877
No 116
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=38.70 E-value=32 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 304 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 304 d~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+++++|++|.+.+...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 35669999999999987654321 04789999773
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=38.68 E-value=47 Score=27.38 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=31.4
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+.||..+-..-....++++|++|.+.+...+.. ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~------~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKP------ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSC------CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECCEE------EEEECCCCEEE
Confidence 455677776533233447999999999998764321 14788998773
No 118
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=38.32 E-value=32 Score=28.83 Aligned_cols=49 Identities=6% Similarity=-0.004 Sum_probs=31.6
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCc-----eeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG-----RTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g-----~~~~~~~~~l~~G~~f 341 (501)
...+.||..+-..-....++++|++|.+.+...+.+ +.. ...+.+||++
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i 98 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTF 98 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEE
Confidence 445677765422222356899999999998875522 111 2689999976
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=38.13 E-value=1e+02 Score=27.80 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=42.1
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 369 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~ 369 (501)
...+.||...-..- .+++++|++|.+.+...+ ++ ..+++||++- +.+.. ...+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~--~~-----~~l~~Gd~~~-------~p~~~-------~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGG--ET-----RTLREYDYVY-------LPAGE-------KHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSS--CE-----EEECTTEEEE-------ECTTC-------CCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECC--EE-----EEECCCCEEE-------ECCCC-------CEEEEeCC
Confidence 34667877654432 778999999999987643 32 6899999773 33221 33444447
Q ss_pred cceeeEec
Q 010787 370 EVEAFALM 377 (501)
Q Consensus 370 ~~~l~~i~ 377 (501)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77776663
No 120
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=37.99 E-value=22 Score=29.58 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=34.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
+....++||..+-.-.....+.++|++|.... ..|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55678899988876666678889999999983 2222110 04677888763
No 121
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.88 E-value=49 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=30.7
Q ss_pred eeeCCCCEEEc--cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 291 VLYTEESYIVR--EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 291 ~~~~~ge~I~~--~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..+.||..... -.....++++|++|.+.+... ++ ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD--EQ-----WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC--CE-----EEEeCCCCEE
Confidence 45677776542 123346999999999998763 33 2689999977
No 122
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=37.65 E-value=30 Score=34.48 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=37.4
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.+....+.||..+...-...+++++|++|.+.+...+.+... ...+.+||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEE
Confidence 355678889887655545577999999999998643333332 3689999987
No 123
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=36.66 E-value=1.5e+02 Score=23.08 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=46.7
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc-
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL- 368 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~- 368 (501)
...+.||...-..-....++++|++|.+.+... ++ ...+.+||++- +.+.. ...+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~--~~-----~~~l~~Gd~~~-------i~~~~-------~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN--DE-----DFPVTKGDLII-------IPLDS-------EHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEET--TE-----EEEEETTCEEE-------ECTTC-------CEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEEC--CE-----EEEECCCcEEE-------ECCCC-------cEEeEeCC
Confidence 344566654333333456899999999998763 33 26789999773 33331 3344443
Q ss_pred -ccce--eeEecHHHHHHHHHHhH
Q 010787 369 -TEVE--AFALMADDLKFVASQFR 389 (501)
Q Consensus 369 -~~~~--l~~i~~~~f~~l~~~~p 389 (501)
++++ ++.++.+-+..++.+-+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3334 45567777766665543
No 124
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=36.49 E-value=72 Score=30.83 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=46.3
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 369 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~ 369 (501)
...++||...-.--....++|+|++|..++.. +|++ ..+++||+|---.. ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~~-----~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNET-----FSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTEE-----EEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCEE-----EEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 44666665543333345689999999999876 3432 68899998742221 145566668
Q ss_pred cceeeEecHHHHH
Q 010787 370 EVEAFALMADDLK 382 (501)
Q Consensus 370 ~~~l~~i~~~~f~ 382 (501)
++.++++.-.-+.
T Consensus 331 ~~~l~~~~d~p~~ 343 (354)
T 2d40_A 331 DSVLFSFSDRPVQ 343 (354)
T ss_dssp EEEEEEEESHHHH
T ss_pred CEEEEEEcCHHHH
Confidence 8888888554443
No 125
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=36.29 E-value=32 Score=29.07 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=30.5
Q ss_pred ceeeeCCCCEEE--ccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIV--REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||.... ..-...+++++|++|.+.+...+ + ...+.+||++
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~--~-----~~~l~~GD~i 93 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ--G-----EHPMVPGDCA 93 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT--E-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC--E-----EEEeCCCCEE
Confidence 345667776442 22222369999999999987643 2 2678999976
No 126
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=35.86 E-value=34 Score=27.60 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=30.8
Q ss_pred eeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+-.--.. ..++++|++|.+.+... ++ ...+.+||++
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEE
Confidence 4567788765322222 36899999999998753 33 2678999977
No 127
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=35.84 E-value=68 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.5
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCC----ceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNG----GRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~----g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||...-.--.+ ..++++|++|.+++...++ ++.. ...+.+||++-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~---~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY---SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE---EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE---EEEECCCCEEE
Confidence 345677888765433233 5799999999999865433 2311 26899999873
No 128
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=35.00 E-value=58 Score=31.75 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=45.1
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 368 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~ 368 (501)
....+.||+.+-..-....++|||++|.-..... +|++ ..+++||++- . |.. ........
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v-dG~~-----~~~~~GD~v~-------i-P~g------~~H~~~N~ 165 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV-NGDP-----VRMSRGDLLL-------T-PGW------CFHGHMND 165 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE-TTEE-----EEEETTCEEE-------E-CTT------CCEEEEEC
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEE-CCEE-----EEEeCCCEEE-------E-CCC------CcEEeEeC
Confidence 3457788887765555567999999999743333 3443 6789999873 2 221 14556666
Q ss_pred ccceeeEecHHH
Q 010787 369 TEVEAFALMADD 380 (501)
Q Consensus 369 ~~~~l~~i~~~~ 380 (501)
++..+..|+-.|
T Consensus 166 gde~l~~l~v~D 177 (368)
T 3nw4_A 166 TDQPMAWIDGLD 177 (368)
T ss_dssp SSSCEEEEEEEC
T ss_pred CCCCeEEEEecc
Confidence 665555554443
No 129
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=34.95 E-value=33 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=30.9
Q ss_pred ceeeeCCCCE-EE-ccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESY-IV-REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~-I~-~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
....+.||.. .- ..-....++++|++|.+.+... ++ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME--ND-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC--CE-----EEEeCCCCEE
Confidence 3456677763 21 1112467999999999998753 23 2678999987
No 130
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=34.90 E-value=61 Score=30.03 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=44.6
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 368 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~ 368 (501)
....+.||..--.......++.||++|.+.+...+ |++ ..+++||++= +.+. ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~-----~~L~~Gds~y-------~p~~-------~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS-----KKLTVDSYAY-------LPPN-------FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC-----EEECTTEEEE-------ECTT-------CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE-----EEEcCCCEEE-------ECCC-------CCEEEEeC
Confidence 34566777653222344679999999999987642 232 5799999773 3332 14455666
Q ss_pred ccceeeEecH
Q 010787 369 TEVEAFALMA 378 (501)
Q Consensus 369 ~~~~l~~i~~ 378 (501)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7888887743
No 131
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=34.78 E-value=33 Score=34.33 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=38.3
Q ss_pred hhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 286 DRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 286 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..+....+.||..+-..-..++++++|++|.+.+...+.+... ...+.+||++
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEE
Confidence 3455678889988766545577999999999998654333222 3689999987
No 132
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=34.15 E-value=44 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=35.9
Q ss_pred hcceeeeCCCCEEEc-cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 287 RLKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
.+....++||..+-. .-....+.++|++|++.+... |+ ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~--~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLE--EN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEEC--CE-----EEEcCCCCEEE
Confidence 455667889987653 345567999999999988753 33 26899999874
No 133
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=34.13 E-value=20 Score=21.45 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=7.5
Q ss_pred CCCC-CCCCCCCC
Q 010787 487 LLQK-PAEPDFTV 498 (501)
Q Consensus 487 ~~~~-p~~~~~~~ 498 (501)
..|| |++||+|.
T Consensus 3 s~~kp~pepd~~n 15 (34)
T 3jqo_C 3 SGHKPPPEPDWSN 15 (34)
T ss_dssp CCCCCCCCCCCSS
T ss_pred CCCCCCCCCcccc
Confidence 3455 67888853
No 134
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=33.86 E-value=38 Score=34.02 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=36.9
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.+....+.||..+-..-..++++++|++|++.+...+.+... ...+.+||++
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~ 138 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAI 138 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEE
Confidence 345568889987765544578999999999998643223222 3689999987
No 135
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=32.89 E-value=38 Score=27.39 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=27.4
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 292 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 292 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.+.||..+-.--....++++|++|.+.+....+++. ..+.+||++
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~-----~~l~~Gd~~ 89 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRT-----EEVGPGEAI 89 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTEE-----EEECTTCEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCEE-----EEECCCCEE
Confidence 444554432222334567789999999873223332 679999976
No 136
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=32.31 E-value=64 Score=29.15 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=34.4
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||..+-.--....++++|++|.+++.. +|.. ..+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~~-----~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDVT-----RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTEE-----EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCEE-----EEECCCCEE
Confidence 4445688888776555557799999999999876 3332 678999844
No 137
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=31.70 E-value=73 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=35.0
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||...-..-... .++++|++|.+++... .+|+... ..+.+||++-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~---~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHART---FNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEE---EEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEE---EEEcCCCEEE
Confidence 3445678887764433344 8999999999998753 3443222 5789999873
No 138
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.19 E-value=71 Score=30.69 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=34.1
Q ss_pred ceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~f 341 (501)
....+.||...-..-.. .+++++|++|.+++...+ +|+.. ...+++||++
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~ 106 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLW 106 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEE
Confidence 34566788765332233 789999999999987643 34322 2589999976
No 139
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=31.18 E-value=64 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.3
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||..+-..-....++++|++|.+++...+ +|+... ..+.+||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~---~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI---DDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEE---EEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEE---EEeCCCCEE
Confidence 344567888865433334789999999999997654 355322 478999976
No 140
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=30.97 E-value=32 Score=29.42 Aligned_cols=31 Identities=6% Similarity=-0.029 Sum_probs=24.1
Q ss_pred CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 305 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 305 ~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
.+.+++||++|.+.+... ++ ...+.+||+|=
T Consensus 109 ~gEE~~yVLeG~v~vtl~--g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVC--KN-----KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEET--TE-----EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEEC--CE-----EEEEcCCCEEE
Confidence 456899999999999774 33 25799999873
No 141
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=30.75 E-value=67 Score=26.33 Aligned_cols=51 Identities=16% Similarity=-0.006 Sum_probs=30.7
Q ss_pred eeeeCCCCEEEccCC-CCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGD-PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+-..-. ..+++++|++|.+.+...+....... ...+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~-~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF-QEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE-EEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee-eEEECCCCEE
Confidence 345677765432222 24589999999999876543210000 1578899876
No 142
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.78 E-value=51 Score=32.48 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=46.2
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 368 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~ 368 (501)
....++||+..-..-....++|+|++|...+.. +|++ ..+++||+|-.-. . ........
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge~-----~~~~~GD~~~iP~-------g-------~~H~~~N~ 355 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGKR-----FDWSEHDIFCVPA-------W-------TWHEHCNT 355 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTEE-----EEECTTCEEEECT-------T-------CCEEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCEE-----EEEeCCCEEEECC-------C-------CeEEeEeC
Confidence 455677777765544456789999999985544 3443 6899999884222 1 13344443
Q ss_pred ---ccceeeEecHHHHHH
Q 010787 369 ---TEVEAFALMADDLKF 383 (501)
Q Consensus 369 ---~~~~l~~i~~~~f~~ 383 (501)
+++.++.++-.-+.+
T Consensus 356 g~~e~~~ll~i~D~Pl~~ 373 (394)
T 3bu7_A 356 QERDDACLFSFNDFPVME 373 (394)
T ss_dssp CSSCCEEEEEEESHHHHH
T ss_pred CCCCCeEEEEeeCHHHHH
Confidence 467777776554443
No 143
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=29.62 E-value=57 Score=30.16 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=33.6
Q ss_pred cceeeeCCCCEEEc-cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||..+-. .-....++++|++|.+.+...+ + ...+++||++
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~--~-----~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDN--E-----WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETT--E-----EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECC--E-----EEEECCCCEE
Confidence 34456788876643 3345679999999999987633 3 2689999987
No 144
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=28.07 E-value=96 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHHhhcceeeeCCCCEEEccCC-CCCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCee
Q 010787 281 LDALCDRLKPVLYTEESYIVREGD-PVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 281 l~~l~~~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~f 341 (501)
+..+-..+....+.||..+-.--. .++++++|++|.+++...+ +|...+ ...+.+||+|
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEE
Confidence 445545667778888886643322 3689999999999986543 334322 2569999988
No 145
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=27.79 E-value=62 Score=30.05 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred hhcceeeeCCCCEEEc-cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 286 DRLKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 286 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
..+....++||..|-. +-....+.++|++|+..+... |+ ...+++||++
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~--~~-----~~~v~~GD~~ 240 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLN--QD-----WVEVEAGDFM 240 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEET--TE-----EEEEETTCEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 4466678899999864 444455889999999987653 33 3689999987
No 146
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=27.09 E-value=48 Score=26.15 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=27.8
Q ss_pred eeeeCCCCEEE--ccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIV--REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+- ..-+....+|+|++|.+.+... ++ ...+.+||++
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~-----~~~l~~Gd~i 76 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GE-----KIELQAGDWL 76 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TE-----EEEEETTEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 34566776542 1112223577799999998763 33 2578899876
No 147
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=26.27 E-value=94 Score=31.72 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=39.9
Q ss_pred HHHHHhhcceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCee
Q 010787 281 LDALCDRLKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 281 l~~l~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~f 341 (501)
+..+-..+....+.||..+-.-=.+ ++++++|++|.+++... .+|.... ...+.+||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEE
Confidence 3444555667788898866433223 68999999999998644 3343322 2579999988
No 148
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=26.13 E-value=96 Score=31.38 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=36.7
Q ss_pred hhcceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCee
Q 010787 286 DRLKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 286 ~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~f 341 (501)
..+....+.||..+-.--.+ ++++++|++|.+++...+ +|.... ...+.+||+|
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~ 393 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVL 393 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEE
Confidence 34556678888866433233 689999999999986543 343322 2579999988
No 149
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=25.89 E-value=1.4e+02 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=46.7
Q ss_pred CCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEccc-ceee
Q 010787 296 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTE-VEAF 374 (501)
Q Consensus 296 ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~~-~~l~ 374 (501)
|+.+-.--...+.+++|++|.+++...+. ++ ..+++||++= +... .+.++.+.++ ..++
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~-~~-----~~l~~Gd~~~-------iPag-------~~h~~~~~~~~~~~l 321 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDY-AA-----TELGSGDVAF-------IPGG-------VEFKYYSEAYFSKVL 321 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTS-CC-----EEECTTCEEE-------ECTT-------CCEEEEESSSSEEEE
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCe-EE-----EEeCCCCEEE-------ECCC-------CCEEEEecCCeEEEE
Confidence 45555555677899999999999876531 22 6899999873 2222 2667777654 7777
Q ss_pred EecH--HHHHHH
Q 010787 375 ALMA--DDLKFV 384 (501)
Q Consensus 375 ~i~~--~~f~~l 384 (501)
.+.. +.+...
T Consensus 322 ~~~~g~~g~~~~ 333 (350)
T 1juh_A 322 FVSSGSDGLDQN 333 (350)
T ss_dssp EEEESSSSHHHH
T ss_pred EEecCccchhhe
Confidence 7776 566554
No 150
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=25.71 E-value=98 Score=26.68 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=29.8
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEE
Q 010787 268 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLF 311 (501)
Q Consensus 268 ~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyf 311 (501)
-.+|.|.+++.....+++.. .+||+|+++....+.+-+
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 35799999999888887776 259999999887665433
No 151
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=25.47 E-value=93 Score=30.29 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=51.4
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 369 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~~ 369 (501)
...++||+..-..-..+..+|.|.+|.-.+... ++. ...++||.|---.. ...+..+.+
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~--~~~-----~~w~~gD~fvvP~w--------------~~h~~~n~~ 341 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVMN--GET-----TKLEKGDMFVVPSW--------------VPWSLQAET 341 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEET--TEE-----EEECTTCEEEECTT--------------CCEEEEESS
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEEC--CEE-----EEecCCCEEEECCC--------------CcEEEEeCC
Confidence 345666665543334567999999999887653 332 57899999853222 266778889
Q ss_pred cceeeEecHHHHHHHH
Q 010787 370 EVEAFALMADDLKFVA 385 (501)
Q Consensus 370 ~~~l~~i~~~~f~~l~ 385 (501)
++.++.++-.-+.+-+
T Consensus 342 ~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 342 QFDLFRFSDAPIMEAL 357 (368)
T ss_dssp SEEEEEEESHHHHHHT
T ss_pred CEEEEEEeCHHHHHHh
Confidence 9999998876665543
No 152
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.45 E-value=1.2e+02 Score=29.11 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeEEEEEEe-CCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~~~~~-~~g~~~~~~~~~l~~G~~fG 342 (501)
+....+.||..+-..-... .++++|++|.+.+... .+|+.. ...+++||+|-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 4455778888764333333 8999999999998753 234311 26899999873
No 153
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=25.34 E-value=55 Score=31.69 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=32.4
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
....+.||...-.--....++++|++|...+...+ |+ ...+++||+|-
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~-g~-----~~~l~~GD~~~ 150 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD-GE-----RTPMNEGDFIL 150 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET-TE-----EEECCTTCEEE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEEEC-CE-----EEEEcCCCEEE
Confidence 34567788776333334679999999998763333 33 26899999883
No 154
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=25.33 E-value=24 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=31.5
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.+...++||+-+-..-... ...|+|.+|.+.+...++... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 3456778888775544444 467888899998875443322 2467888765
No 155
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=25.14 E-value=65 Score=29.11 Aligned_cols=46 Identities=4% Similarity=-0.124 Sum_probs=33.1
Q ss_pred eeeeCC-CCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 290 PVLYTE-ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 290 ~~~~~~-ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...++| |..+-..-....++++|++|.+.+...+ + ...+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~-----~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEG--C-----TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETT--E-----EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECC--E-----EEEECCCCEEE
Confidence 345788 7766544445678999999999987543 2 25799999874
No 156
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=24.84 E-value=86 Score=26.41 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=43.2
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
.+....++||..+-.-..+..+..+|++|..... +.+ ..+.+|+++=+ .+. ...+..
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~~-------~~~~~Gd~~~~-------P~g-------~~H~~~ 99 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EHD-------WVAHAGSVVYE-------TAS-------TRHTPQ 99 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TSS-------CCBCTTCEEEE-------CSS-------EEECEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CCC-------eEECCCeEEEE-------CCC-------CcceeE
Confidence 4456778888888766666788999999998742 221 36788887632 221 245566
Q ss_pred Ec----ccceeeE
Q 010787 367 AL----TEVEAFA 375 (501)
Q Consensus 367 A~----~~~~l~~ 375 (501)
+. ++|.++.
T Consensus 100 ~~~~~~e~~~~~~ 112 (159)
T 3ebr_A 100 SAYAEGPDIITFN 112 (159)
T ss_dssp ESSSSSSCEEEEE
T ss_pred eCCCCCCCEEEEE
Confidence 65 6677666
No 157
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.81 E-value=2.3e+02 Score=26.36 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCHHHHHhhcc-----------HHHHHHHHHHHHHHHhcc--ccccccCcHHHHHHHHh
Q 010787 220 PDTLRERIRRYEQYKWQETRGVDEENLLCNLP-----------KDLRRDIKRHLCLALLMR--VPLFEKMDEQLLDALCD 286 (501)
Q Consensus 220 p~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp-----------~~Lr~~i~~~~~~~~l~~--i~~F~~l~~~~l~~l~~ 286 (501)
-.+|..-+.+||...-.++-.-...+++...| -+|+.=+..+. .++-++ +.+|.. . -
T Consensus 138 ~~ql~~~~~~f~~~~~~rtc~p~~~~~~~~~p~~~~~~~~~~pf~Lk~Wl~~h~-~ei~s~~~~sLFg~-~--------~ 207 (286)
T 2qnk_A 138 GTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHH-RELQAGTPLSLFGD-T--------Y 207 (286)
T ss_dssp HHHHHHHHHHHHTSHHHHHSCCCGGGSCSSCSSCCCCCCCCCCEEHHHHHHHTH-HHHHTTCCEESSCT-T--------S
T ss_pred HHhhHHHHHHHhcCcccccCCCChhhcccCCCCCCccccccCCcCHHHHHHhhh-HHHhcCCccccccC-C--------C
Confidence 34555556666655555544444555554444 34444443332 222222 245532 0 1
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 010787 287 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 366 (501)
Q Consensus 287 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~ 366 (501)
..+...+.+|+.+..+... +.++.+++|...+.. +|.+ ..|.+||..- +.+. ..++..
T Consensus 208 eteV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q~-----~~L~~~DsLL-------Ipa~-------~~y~~~ 265 (286)
T 2qnk_A 208 ETQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGRR-----LSLAPDDSLL-------VLAG-------TSYAWE 265 (286)
T ss_dssp SEEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTEE-----EEECTTEEEE-------ECTT-------CCEEEE
T ss_pred ceEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCeE-----EeccCCCEEE-------ecCC-------CeEEEE
Confidence 2456679999999988887 999999999986544 2332 5788888652 3333 278899
Q ss_pred EcccceeeEecH
Q 010787 367 ALTEVEAFALMA 378 (501)
Q Consensus 367 A~~~~~l~~i~~ 378 (501)
+.++|.++.+..
T Consensus 266 r~~gsv~L~I~~ 277 (286)
T 2qnk_A 266 RTQGSVALSVTQ 277 (286)
T ss_dssp ECTTCEEEEEEE
T ss_pred ecCCeEEEEEEE
Confidence 999999988753
No 158
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.77 E-value=95 Score=29.26 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=32.6
Q ss_pred ceeeeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 289 KPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
......||...-..-.. .+++++|++|.+++... |+. ..+++||++
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~~ 95 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLD--GER-----YLLISGDYA 95 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEEC--CEE-----EEECCCCEE
Confidence 34467888765332233 78999999999998752 332 689999977
No 159
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=23.04 E-value=83 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.0
Q ss_pred CeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 307 DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 307 ~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
.++++|++|.+.+...++ + ...+.+||++
T Consensus 65 ~E~~~vl~G~~~~~~~~~-~-----~~~l~~Gd~~ 93 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDI-G-----AVMLEAGGSA 93 (134)
T ss_dssp CEEEEEEESEEEEEETTT-E-----EEEEETTCEE
T ss_pred cEEEEEEeCEEEEEECCc-E-----EEEecCCCEE
Confidence 799999999999876442 3 2688999976
No 160
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.59 E-value=1.4e+02 Score=30.44 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHhhcceeeeCCCCEEEccC-CCCCeEEEEEeeEEEEEEeC-CceeeeeeeeEeCCCCee
Q 010787 280 LLDALCDRLKPVLYTEESYIVREG-DPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 280 ~l~~l~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~~~~~~-~g~~~~~~~~~l~~G~~f 341 (501)
.+..+-..+....+.||-++---= -.++++.+|++|.+++...+ +|.... ...+.+||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEE
Confidence 345555566778889998774332 23689999999999986433 344322 3789999988
No 161
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.90 E-value=68 Score=29.78 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=30.7
Q ss_pred eeeeCCCCEEEc--cCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVR--EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~--~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||...-. .....+++++|++|.+.+...+ ++ ..+++||++
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g--~~-----~~L~~GD~i 118 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQG--QV-----HAMQPGGYA 118 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESS--CE-----EEECTTEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECC--EE-----EEECCCCEE
Confidence 345667765511 1233578999999999987643 22 689999976
No 162
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=21.82 E-value=1e+02 Score=28.03 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 306 VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 306 ~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
.+++..|++|.+.+... +|.. ..+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~~-~G~~-----~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLE-NGSS-----LTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEET-TSCE-----EEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeC-CCCE-----EEECCCCEEE
Confidence 46899999999998765 4543 6799999884
No 163
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.81 E-value=69 Score=29.27 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=32.7
Q ss_pred cceeeeCCCCEEEccC-CCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 288 LKPVLYTEESYIVREG-DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 288 l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
+....+.||..+-..- ....++++|++|.+.+...+ + ...+.+||++
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~--~-----~~~l~~GD~i 228 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDN--N-----WIPVKKGDYI 228 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSS--C-----EEEEETTCEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECC--E-----EEEeCCCCEE
Confidence 3556778887653222 23578999999999987542 3 2689999977
No 164
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=21.80 E-value=82 Score=26.76 Aligned_cols=47 Identities=6% Similarity=-0.057 Sum_probs=32.4
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 288 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 288 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
+....++||..+-.-..+.....+|++|.+..- ++.+ ..+.+|+++=
T Consensus 45 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~---~~~~-----~~~~aGd~~~ 91 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT---EYPG-----QKQTAGCYLY 91 (165)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEESEEEET---TCTT-----SCEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC---CCce-----EEECCCeEEE
Confidence 456678888888766667789999999998751 2101 3456777663
No 165
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=21.62 E-value=81 Score=31.34 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.3
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCee
Q 010787 290 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 341 (501)
Q Consensus 290 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~f 341 (501)
...+.||..+.-.--.++++++|++|.+.+-..+.+... +..+.+||+|
T Consensus 48 ~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~---~~~l~~GDv~ 96 (418)
T 3s7i_A 48 QIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRK---SFNLDEGHAL 96 (418)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEE
T ss_pred EEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEE---EEEecCCCEE
Confidence 446678887766544578999999999988644333332 4789999988
No 166
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=21.52 E-value=1.2e+02 Score=27.11 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=43.7
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 010787 289 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 368 (501)
Q Consensus 289 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~r~~tv~A~ 368 (501)
....+.||..+-.......+..+|++|.+. ..+ ..+.+|+++= ..+. ......|.
T Consensus 46 ~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~---d~~--------~~~~~Gd~~~-------~P~g-------~~H~p~a~ 100 (223)
T 3o14_A 46 SIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ---DEH--------GDYPAGTYVR-------NPPT-------TSHVPGSA 100 (223)
T ss_dssp EEEEECTTEECCCEECTTCEEEEEEEEEEE---ETT--------EEEETTEEEE-------ECTT-------CEECCEES
T ss_pred EEEEECCCCCcccccCCCCEEEEEEEeEEE---ECC--------eEECCCeEEE-------eCCC-------CccccEeC
Confidence 456788888877666667899999999975 221 5788888753 2222 14455567
Q ss_pred ccceeeEec
Q 010787 369 TEVEAFALM 377 (501)
Q Consensus 369 ~~~~l~~i~ 377 (501)
+.|.++.-.
T Consensus 101 ~gc~~~vk~ 109 (223)
T 3o14_A 101 EGCTIFVKL 109 (223)
T ss_dssp SCEEEEEEE
T ss_pred CCCEEEEEe
Confidence 788887764
No 167
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=20.56 E-value=1.1e+02 Score=28.34 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=37.6
Q ss_pred HhhcceeeeCCCCEEE-ccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeec
Q 010787 285 CDRLKPVLYTEESYIV-REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 342 (501)
Q Consensus 285 ~~~l~~~~~~~ge~I~-~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG 342 (501)
...+....+.||..+= .+-....+-++|++|+..+...+ + ...+++||++-
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~--~-----~~~V~~GD~i~ 236 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGD--N-----WYPVQAGDVIW 236 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETT--E-----EEEEETTCEEE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECC--E-----EEEecCCCEEE
Confidence 3445667799999984 46566779999999998876533 2 36789999773
No 168
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=20.09 E-value=1.3e+02 Score=30.26 Aligned_cols=71 Identities=7% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeee-------------------
Q 010787 270 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFF------------------- 330 (501)
Q Consensus 270 i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~------------------- 330 (501)
++.|..-+ ..+..+--.+....+.||.++.-.-..+.++++|++|...+-....+...++
T Consensus 48 ~~~~~~~~-~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q 126 (459)
T 2e9q_A 48 TEVWDQDN-DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQ 126 (459)
T ss_dssp EEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEEC
T ss_pred EEecCCCC-hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccc
Q ss_pred eeeEeCCCCee
Q 010787 331 NSEYLGAGDFC 341 (501)
Q Consensus 331 ~~~~l~~G~~f 341 (501)
.+..+.+||+|
T Consensus 127 ~~~~l~~GDv~ 137 (459)
T 2e9q_A 127 KIRPFREGDLL 137 (459)
T ss_dssp CCEEEETTEEE
T ss_pred eeEEecCCCEE
Done!