BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010789
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 184/323 (56%), Gaps = 14/323 (4%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
IGV +G + PPS VV + K N I R++L+D + L AL NS IQV++ +P +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAA 163
+LAS+ AA +W+ +NV ++ S V RY+AVGNE +P LPA++NI A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPS--VSFRYIAVGNE-LIP--GSDLAQYILPAMRNIYNA 115
Query: 164 LIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY 223
L AGL +IKV+ ++ V + S PS G F + + I++FL+ NG P VN+Y
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGT-SYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVY 174
Query: 224 PFISLYNDP-SFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIV 282
P+ S +P + +A F ++ + D Y+N+FDA D + AL++ G N++++V
Sbjct: 175 PYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVV 234
Query: 283 GEIGWPT-DGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSG-AIDAYLFSLIDEDAKSIQ 340
E GWP+ G A+ AQ +NQ + V G GTP R G I+AY+F + +E+ K+
Sbjct: 235 SESGWPSAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKA-- 290
Query: 341 PGNFERHWGLLYFDGQPKYQLSL 363
G E+++GL Y + QP YQ+S
Sbjct: 291 -GGIEQNFGLFYPNKQPVYQISF 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 176/321 (54%), Gaps = 16/321 (4%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
IGV +G A + STVV M K NGI ++L+ + L A+ +GI V+VG PN++LS
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAA 163
LA+S AA +WV N+ ++ V RYV VGNE G +PA++N+ A
Sbjct: 61 NLAASPAAAASWVKSNIQAYPK---VSFRYVCVGNE-----VAGGATRNLVPAMKNVHGA 112
Query: 164 LIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY 223
L+ AGLG IKVT ++ + S PS G F + M +++FL+ P NIY
Sbjct: 113 LVAAGLG-HIKVTTSVSQAILGVFSP-PSAGSFTGEAAAFMGPVVQFLARTNAPLMANIY 170
Query: 224 PFISL-YNDPSFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIV 282
P+++ YN + + +A F+++ + + D Y+N+FD D A+ K+G ++ ++V
Sbjct: 171 PYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVV 230
Query: 283 GEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDEDAKSIQPG 342
E GWP+ G A A+ +NQ ++ V G+GTP GAI+ Y+F++ +E+ K
Sbjct: 231 SESGWPSGGGTAATPANARFYNQHLINHV--GRGTPRHPGAIETYIFAMFNENQKD---S 285
Query: 343 NFERHWGLLYFDGQPKYQLSL 363
E++WGL Y + Q Y ++
Sbjct: 286 GVEQNWGLFYPNMQHVYPINF 306
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 22/328 (6%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
+GV +G Q + P S V+ + K + I R++++D + L AL S I++++G+PN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGT--FIGTTLPALQNIQ 161
+L + A ++WV KNV SS V RY+AVGNE P GT LPA++NI
Sbjct: 62 SLTNPSNA-KSWVQKNVRGFWSS--VRFRYIAVGNE-ISPVNRGTAWLAQFVLPAMRNIH 117
Query: 162 AALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVN 221
A+ AGL +IKV+ ++ + S PS G FR D+ + I++FLS P N
Sbjct: 118 DAIRSAGLQDQIKVSTAIDLTLV-GNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLAN 176
Query: 222 IYPFISLYNDPS-FPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSI 280
IYP+ + +P + +A F S S + D R Y+N+FDA D L AL++ G+L +
Sbjct: 177 IYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEV 236
Query: 281 IVGEIGWPTDGDKNANLKFAQRFNQG--FMSRV--NAGKGTPMR-SGAIDAYLFSLIDED 335
+V E GWP+ G FA F+ G ++S + + +GTP R AI+ YLF++ DE+
Sbjct: 237 VVSESGWPSAG------AFAATFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDEN 290
Query: 336 AKSIQPGNFERHWGLLYFDGQPKYQLSL 363
K QP E+H+GL + + KY L+
Sbjct: 291 KK--QP-EVEKHFGLFFPNKWQKYNLNF 315
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 173/322 (53%), Gaps = 12/322 (3%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
IGV +G A + V+++ N I +++++ + NAL S I++++ +PN+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAA 163
LA+ A WV N+ +H V +Y+AVGNE +G + PA++NI A
Sbjct: 63 ALANPSNA-NGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 164 LIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY 223
L AGL +IKV+ + + + + P + FR + + I+ FL+ + P NIY
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLL-TNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 224 PFI-SLYNDPSFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIV 282
P+ + N + P+ +A F N ND G Y+N+FDA D++ +A +K G N+ IIV
Sbjct: 179 PYFGHIDNTNAVPLSYALF--NQQRRNDTG--YQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 283 GEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSG-AIDAYLFSLIDEDAKSIQP 341
E GWP++G A LK A+ + ++ V G GTP + G I+ YLF++ DE+ K +
Sbjct: 235 SESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 342 GNFERHWGLLYFDGQPKYQLSL 363
E+H+GL D +PKYQL+
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 172/322 (53%), Gaps = 12/322 (3%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
IGV +G A + V+++ N I +++++ + NAL S I++++ +PN+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAA 163
LA+ A WV N+ +H V +Y+AVGNE +G + PA++NI A
Sbjct: 63 ALANPSNA-NGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 164 LIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY 223
L AGL +IKV+ + + + + P + FR + + I+ FL+ + P NIY
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLL-TNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 224 PFI-SLYNDPSFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIV 282
P+ + N + P+ +A F N ND G Y+N+FDA D++ +A +K G N+ IIV
Sbjct: 179 PYFGHIDNTNAVPLSYALF--NQQRRNDTG--YQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 283 GEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSG-AIDAYLFSLIDEDAKSIQP 341
GWP++G A LK A+ + ++ V G GTP + G I+ YLF++ DE+ K +
Sbjct: 235 SASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 342 GNFERHWGLLYFDGQPKYQLSL 363
E+H+GL D +PKYQL+
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 176/322 (54%), Gaps = 18/322 (5%)
Query: 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLS 103
IGV +G + S VV++ + GI+ ++++ AD + L+AL NSGI +++ I N+ L+
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 104 TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAA 163
+A+S A +WV NV + + V+I+Y+A GNE G + LPA++N+ AA
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPA--VNIKYIAAGNE-----VQGGATQSILPAMRNLNAA 113
Query: 164 LIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY 223
L A IKV+ + D + S PS G F+ + M + + L+ G P N+Y
Sbjct: 114 LSAA-GLGAIKVSTSIRFDEV-ANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVY 168
Query: 224 PFISLYNDP-SFPIDFAFFDSNSSPIN-DNGRVYENVFDANYDTLVWALQKNGFGNLSII 281
P+ + ++P S +++A F ++ + +NG Y ++FDA D + AL+K G + ++
Sbjct: 169 PYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVV 228
Query: 282 VGEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDEDAKSIQP 341
V E GWP+ G A+ A+ +NQG ++ V G GTP + A++ Y+F++ +E+ K+
Sbjct: 229 VSESGWPSAGGFAASAGNARTYNQGLINHV--GGGTPKKREALETYIFAMFNENQKTGDA 286
Query: 342 GNFERHWGLLYFDGQPKYQLSL 363
ER +GL D P Y +
Sbjct: 287 --TERSFGLFNPDKSPAYNIQF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 380 AQKWCVMSPSASLDDPQVAASVSYACGNA-DCTSLGYGTSCGNLDS-RGNISYAFNSYYQ 437
A WCV P S D Q+ +++YAC DC + G +C ++ + + +Y N YYQ
Sbjct: 10 AGSWCVPKPGVSDD--QLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQ 67
Query: 438 INNQLDSACRFPNLSAVTTTNPSTGDCLF 466
+ C F + +T TNPS G C F
Sbjct: 68 HAGRNSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 255 YENVFDANYDTLVWALQKNGFGNLSIIVGEIGWPTDGD---KNANLKFAQRFNQGFMSRV 311
Y+N+ NY L A K G +L I+ E+ ++ NA + Q+F G M+R
Sbjct: 487 YKNILTKNYSALT-AGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545
Query: 312 NAGKGTPMRSGAI 324
N +G M SG +
Sbjct: 546 NVLRGLIMSSGKM 558
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 73 VKLFDADSKYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSHVSSNGVD 130
V +FD +KYL ++ V+VG P+E + + V+ A+ + V+ + + VD
Sbjct: 232 VVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVD 289
>pdb|4F13|A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
pdb|4F13|B Chain B, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
Length = 353
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 169 LGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISL 228
L R+K +P D + P +G+ M+ ++LS N GP + P ++L
Sbjct: 32 LDDRLKAALPKEYDCTTEATPNPQQGE--------MVIPRRYLSGNHGPVNPDYEPVVTL 83
Query: 229 YND 231
Y D
Sbjct: 84 YRD 86
>pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From
Sphingomonas Species A1 At 1.78a Resolution
pdb|1HV6|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii Complexed With
Trisaccharide Product
Length = 351
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 169 LGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISL 228
L R+K +P D + P +G+ M+ ++LS N GP + P ++L
Sbjct: 32 LDDRLKAALPKEYDCTTEATPNPQQGE--------MVIPRRYLSGNHGPVNPDYEPVVTL 83
Query: 229 YND 231
Y D
Sbjct: 84 YRD 86
>pdb|4F10|A Chain A, Alginate Lyase A1-Iii H192a Complexed With Tetrasaccharide
pdb|4F10|B Chain B, Alginate Lyase A1-Iii H192a Complexed With Tetrasaccharide
Length = 353
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 169 LGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISL 228
L R+K +P D + P +G+ M+ ++LS N GP + P ++L
Sbjct: 32 LDDRLKAALPKEYDCTTEATPNPQQGE--------MVIPRRYLSGNHGPVNPDYEPVVTL 83
Query: 229 YND 231
Y D
Sbjct: 84 YRD 86
>pdb|4E1Y|A Chain A, Alginate Lyase A1-Iii H192a Apo Form
pdb|4E1Y|B Chain B, Alginate Lyase A1-Iii H192a Apo Form
Length = 353
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 169 LGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISL 228
L R+K +P D + P +G+ M+ ++LS N GP + P ++L
Sbjct: 32 LDDRLKAALPKEYDCTTEATPNPQQGE--------MVIPRRYLSGNHGPVNPDYEPVVTL 83
Query: 229 YND 231
Y D
Sbjct: 84 YRD 86
>pdb|3ZJK|A Chain A, Crystal Structure Of Ttb-gly F401s Mutant
pdb|3ZJK|B Chain B, Crystal Structure Of Ttb-gly F401s Mutant
pdb|3ZJK|C Chain C, Crystal Structure Of Ttb-gly F401s Mutant
Length = 431
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 IRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKA 167
+ + A NEP+ F G + G P L+N++AAL A
Sbjct: 156 VPFFATLNEPWCSAFLGHWTGEHAPGLRNLEAALRAA 192
>pdb|1NP2|A Chain A, Crystal Structure Of Thermostable Beta-Glycosidase From
Thermophilic Eubacterium Thermus Nonproteolyticus Hg102
pdb|1NP2|B Chain B, Crystal Structure Of Thermostable Beta-Glycosidase From
Thermophilic Eubacterium Thermus Nonproteolyticus Hg102
Length = 436
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 IRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKA 167
+ + A NEP+ F G + G P L+N++AAL A
Sbjct: 156 VPFFATLNEPWCSAFLGHWTGEHAPGLRNLEAALRAA 192
>pdb|1UG6|A Chain A, Structure Of Beta-Glucosidase At Atomic Resolution From
Thermus Thermophilus Hb8
Length = 431
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 IRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKA 167
+ + A NEP+ F G + G P L+N++AAL A
Sbjct: 156 VPFFATLNEPWCSAFLGHWTGEHAPGLRNLEAALRAA 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,714,526
Number of Sequences: 62578
Number of extensions: 660080
Number of successful extensions: 1430
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 30
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)