Query 010789
Match_columns 501
No_of_seqs 293 out of 1697
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 5.5E-83 1.2E-87 651.3 22.7 308 44-363 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.8E-41 3.8E-46 329.9 22.5 250 41-355 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 1.8E-27 3.8E-32 199.3 7.3 83 382-466 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 2.3E-21 5E-26 159.6 5.8 70 382-453 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.4 4.9E-12 1.1E-16 128.2 14.8 134 43-181 29-185 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.8 4.5E-07 9.8E-12 94.0 21.3 246 58-360 26-328 (332)
7 COG3867 Arabinogalactan endo-1 98.3 8.1E-06 1.8E-10 82.3 13.4 207 57-313 64-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.0 0.00067 1.5E-08 76.0 22.5 256 43-361 294-585 (604)
9 PF00150 Cellulase: Cellulase 97.9 0.0029 6.2E-08 62.7 21.2 131 43-176 10-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.4 0.022 4.8E-07 56.9 20.0 78 267-360 172-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.3 0.21 4.5E-06 49.7 16.1 67 278-357 166-232 (239)
12 TIGR03356 BGL beta-galactosida 94.8 7.5 0.00016 42.1 23.0 74 275-356 335-414 (427)
13 PF02836 Glyco_hydro_2_C: Glyc 91.1 4 8.7E-05 41.5 13.2 96 43-140 17-132 (298)
14 PRK10340 ebgA cryptic beta-D-g 87.9 28 0.0006 42.0 18.7 97 43-141 336-451 (1021)
15 PF02449 Glyco_hydro_42: Beta- 80.2 5.4 0.00012 42.1 7.5 82 59-142 13-140 (374)
16 PF00232 Glyco_hydro_1: Glycos 79.6 1.3 2.8E-05 48.2 2.7 117 59-181 61-223 (455)
17 cd02875 GH18_chitobiase Chitob 78.5 14 0.0003 39.0 9.9 95 69-169 55-150 (358)
18 PF03662 Glyco_hydro_79n: Glyc 75.3 11 0.00023 39.5 7.8 86 82-167 114-203 (319)
19 PF01229 Glyco_hydro_39: Glyco 73.7 1.5E+02 0.0032 32.7 17.6 249 62-358 46-350 (486)
20 PF00925 GTP_cyclohydro2: GTP 66.8 6.5 0.00014 37.1 3.7 37 61-97 131-167 (169)
21 PRK13511 6-phospho-beta-galact 64.8 12 0.00027 41.0 5.9 46 59-104 57-121 (469)
22 COG4782 Uncharacterized protei 63.0 22 0.00047 37.9 6.9 57 255-314 125-187 (377)
23 PLN02814 beta-glucosidase 62.5 15 0.00033 40.7 6.1 72 275-356 385-461 (504)
24 smart00481 POLIIIAc DNA polyme 60.7 30 0.00064 26.9 5.9 44 56-99 15-63 (67)
25 PRK09936 hypothetical protein; 56.0 93 0.002 32.2 9.9 60 42-101 20-96 (296)
26 PLN02849 beta-glucosidase 55.2 21 0.00045 39.6 5.6 72 275-356 383-461 (503)
27 PLN02998 beta-glucosidase 55.0 18 0.00039 40.1 5.0 72 275-356 390-466 (497)
28 PRK09525 lacZ beta-D-galactosi 54.5 85 0.0018 38.1 10.9 97 43-141 352-464 (1027)
29 TIGR00505 ribA GTP cyclohydrol 53.7 21 0.00045 34.4 4.7 33 62-94 131-163 (191)
30 PRK00393 ribA GTP cyclohydrola 53.2 21 0.00046 34.5 4.7 33 62-94 134-166 (197)
31 cd02874 GH18_CFLE_spore_hydrol 53.0 35 0.00075 34.9 6.5 83 80-169 48-138 (313)
32 cd00598 GH18_chitinase-like Th 49.2 40 0.00087 31.8 5.9 85 81-169 53-142 (210)
33 cd02872 GH18_chitolectin_chito 48.0 1.9E+02 0.0041 30.1 11.2 76 89-167 69-150 (362)
34 PRK09593 arb 6-phospho-beta-gl 48.0 43 0.00093 36.9 6.6 46 59-104 76-141 (478)
35 PF05990 DUF900: Alpha/beta hy 46.6 52 0.0011 32.5 6.4 41 270-313 42-88 (233)
36 TIGR01579 MiaB-like-C MiaB-lik 46.4 3.6E+02 0.0077 28.8 13.2 26 202-228 305-330 (414)
37 cd00641 GTP_cyclohydro2 GTP cy 43.0 37 0.00081 32.6 4.6 33 62-94 133-165 (193)
38 PRK15014 6-phospho-beta-glucos 41.4 46 0.00099 36.7 5.5 46 59-104 72-137 (477)
39 PRK12485 bifunctional 3,4-dihy 41.0 32 0.0007 36.7 4.2 32 62-94 331-362 (369)
40 cd06418 GH25_BacA-like BacA is 40.6 3.6E+02 0.0078 26.4 12.2 107 56-170 21-143 (212)
41 PRK09589 celA 6-phospho-beta-g 40.3 67 0.0015 35.4 6.6 46 59-104 70-135 (476)
42 PF04909 Amidohydro_2: Amidohy 39.4 58 0.0013 31.5 5.5 91 154-288 84-175 (273)
43 PRK14019 bifunctional 3,4-dihy 38.5 38 0.00081 36.2 4.2 33 62-95 328-360 (367)
44 cd02876 GH18_SI-CLP Stabilin-1 38.2 2.6E+02 0.0057 28.6 10.3 87 80-169 54-148 (318)
45 TIGR03632 bact_S11 30S ribosom 37.8 79 0.0017 27.7 5.4 36 60-95 51-91 (108)
46 KOG0626 Beta-glucosidase, lact 35.9 80 0.0017 35.2 6.2 73 273-354 403-486 (524)
47 PRK09314 bifunctional 3,4-dihy 35.7 48 0.001 35.0 4.4 34 61-94 300-334 (339)
48 PF13721 SecD-TM1: SecD export 35.2 1.6E+02 0.0035 25.4 6.9 53 23-75 12-65 (101)
49 PRK09318 bifunctional 3,4-dihy 35.2 53 0.0012 35.3 4.7 37 62-98 320-356 (387)
50 PRK08815 GTP cyclohydrolase; P 34.7 54 0.0012 35.1 4.6 37 62-98 305-341 (375)
51 PF02055 Glyco_hydro_30: O-Gly 34.5 6.5E+02 0.014 28.0 13.1 88 88-176 166-277 (496)
52 PF14488 DUF4434: Domain of un 34.0 3.1E+02 0.0066 25.8 9.1 80 81-168 69-152 (166)
53 PRK09311 bifunctional 3,4-dihy 33.6 57 0.0012 35.3 4.6 34 61-94 338-371 (402)
54 PLN02831 Bifunctional GTP cycl 33.4 56 0.0012 35.8 4.6 36 62-97 373-408 (450)
55 PRK09319 bifunctional 3,4-dihy 33.1 59 0.0013 36.6 4.7 37 62-98 343-379 (555)
56 cd04743 NPD_PKS 2-Nitropropane 32.9 2.9E+02 0.0062 29.0 9.5 58 41-99 55-112 (320)
57 COG1433 Uncharacterized conser 32.6 95 0.0021 27.9 5.1 39 60-98 56-94 (121)
58 PF14587 Glyco_hydr_30_2: O-Gl 32.0 2.7E+02 0.0058 30.0 9.2 97 81-180 108-227 (384)
59 TIGR03628 arch_S11P archaeal r 30.8 1.2E+02 0.0026 27.1 5.4 37 59-95 53-102 (114)
60 smart00636 Glyco_18 Glycosyl h 30.2 1.6E+02 0.0034 30.2 7.2 80 83-167 57-142 (334)
61 COG1671 Uncharacterized protei 28.7 98 0.0021 28.9 4.7 89 74-169 3-119 (150)
62 PRK09852 cryptic 6-phospho-bet 28.7 1.2E+02 0.0025 33.5 6.1 46 59-104 74-139 (474)
63 PF14871 GHL6: Hypothetical gl 28.5 1.4E+02 0.0031 27.0 5.7 44 57-100 1-67 (132)
64 PRK14332 (dimethylallyl)adenos 28.3 6E+02 0.013 27.7 11.5 192 56-286 183-396 (449)
65 PRK13347 coproporphyrinogen II 28.0 1.8E+02 0.0039 31.6 7.4 54 59-112 152-228 (453)
66 CHL00041 rps11 ribosomal prote 27.4 1.5E+02 0.0032 26.3 5.5 35 60-94 64-103 (116)
67 PF00411 Ribosomal_S11: Riboso 27.4 1.1E+02 0.0024 26.8 4.6 35 61-95 52-91 (110)
68 PRK14328 (dimethylallyl)adenos 26.8 8.3E+02 0.018 26.4 12.4 23 57-79 177-202 (439)
69 TIGR01233 lacG 6-phospho-beta- 26.6 1.3E+02 0.0028 33.1 6.0 46 59-104 56-120 (467)
70 PRK09607 rps11p 30S ribosomal 26.5 1.5E+02 0.0033 27.1 5.4 37 59-95 60-109 (132)
71 COG4213 XylF ABC-type xylose t 26.5 1.7E+02 0.0037 30.7 6.4 76 80-178 175-250 (341)
72 cd01543 PBP1_XylR Ligand-bindi 25.9 5.9E+02 0.013 24.4 11.2 129 58-211 97-238 (265)
73 cd02873 GH18_IDGF The IDGF's ( 25.7 5.6E+02 0.012 27.5 10.6 165 83-283 65-270 (413)
74 PRK06552 keto-hydroxyglutarate 25.6 6.4E+02 0.014 24.7 10.2 89 56-165 117-210 (213)
75 PRK07198 hypothetical protein; 25.6 62 0.0013 34.9 3.1 37 62-98 338-375 (418)
76 PF01055 Glyco_hydro_31: Glyco 25.4 3.1E+02 0.0068 29.3 8.6 132 150-331 42-178 (441)
77 PRK05309 30S ribosomal protein 24.7 1.8E+02 0.0038 26.4 5.5 35 60-94 68-107 (128)
78 PLN03059 beta-galactosidase; P 23.1 1.3E+03 0.029 27.5 16.0 158 14-180 3-223 (840)
79 PRK15412 thiol:disulfide inter 23.0 5.3E+02 0.011 24.1 8.8 44 69-119 69-119 (185)
80 COG0621 MiaB 2-methylthioadeni 22.2 5.2E+02 0.011 28.3 9.5 47 43-89 195-251 (437)
81 PRK14330 (dimethylallyl)adenos 22.0 1E+03 0.022 25.6 12.5 78 131-228 250-332 (434)
82 KOG0078 GTP-binding protein SE 21.6 2.1E+02 0.0046 28.1 5.8 61 71-141 61-128 (207)
83 cd06545 GH18_3CO4_chitinase Th 21.4 2.4E+02 0.0052 27.9 6.4 81 81-169 50-133 (253)
84 COG0807 RibA GTP cyclohydrolas 21.4 1.7E+02 0.0036 28.6 4.9 39 62-100 133-171 (193)
85 PF02811 PHP: PHP domain; Int 21.2 1.9E+02 0.004 26.0 5.2 44 56-99 16-64 (175)
86 TIGR03234 OH-pyruv-isom hydrox 20.1 2.5E+02 0.0054 27.4 6.2 51 44-95 3-57 (254)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=5.5e-83 Score=651.28 Aligned_cols=308 Identities=47% Similarity=0.809 Sum_probs=251.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHHHhhcccc
Q 010789 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSH 123 (501)
Q Consensus 44 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~v~~y 123 (501)
+|||||+.++|+|+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|++++++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCccccchhHHH
Q 010789 124 VSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDL 203 (501)
Q Consensus 124 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~~ 203 (501)
+|. ++|++|+||||++... ....|+|+|+++|++|++.||+++|||+|++.++++..+|| ||+|.|++++.++
T Consensus 81 ~~~--~~i~~i~VGnEv~~~~----~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~P-PS~g~F~~~~~~~ 153 (310)
T PF00332_consen 81 LPA--VNIRYIAVGNEVLTGT----DNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFP-PSAGVFRSDIASV 153 (310)
T ss_dssp TTT--SEEEEEEEEES-TCCS----GGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SS-GGG-EESHHHHHH
T ss_pred Ccc--cceeeeecccccccCc----cceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCC-CccCcccccchhh
Confidence 997 9999999999999642 12279999999999999999998999999999999999999 9999999999899
Q ss_pred HHHHHHHHhhcCCCceeecCCCcccCCCCC-CCcccccccCCCCcccCCCccchhhHHhhhhHHHHHHHHcCCCCccEEE
Q 010789 204 MLQILKFLSDNGGPFTVNIYPFISLYNDPS-FPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIV 282 (501)
Q Consensus 204 l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~-i~ld~Alf~~~~~~~~d~~~~Y~nlfdaqvdav~~al~k~g~~~~~VvV 282 (501)
|.++++||..|+||||+|+||||++..+|. ++||||+|+++...+ |++++|+||||+|+|++++||+++|+++++|+|
T Consensus 154 ~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv 232 (310)
T PF00332_consen 154 MDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVV 232 (310)
T ss_dssp HHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEE
T ss_pred hhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEE
Confidence 999999999999999999999999999976 999999999998766 778999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC-CccEEEEeccccccccCCCCCcceeeEeeecCCCeeeee
Q 010789 283 GEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSG-AIDAYLFSLIDEDAKSIQPGNFERHWGLLYFDGQPKYQL 361 (501)
Q Consensus 283 sETGWPS~G~~~AS~~Na~~y~~~li~~~~s~~Gtp~rp~-~i~~y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~~ky~l 361 (501)
+||||||+|+..|+++||+.|++++++|+. .|||+||+ .+++||||||||+||+ +..+|||||||++||++||+|
T Consensus 233 ~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~--~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 233 GETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKP--GPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSS--SSGGGGG--SB-TTSSBSS--
T ss_pred eccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCC--CCcccceeeeECCCCCeecCC
Confidence 999999999988999999999999999997 58999998 8999999999999996 234999999999999999999
Q ss_pred cc
Q 010789 362 SL 363 (501)
Q Consensus 362 ~~ 363 (501)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=329.92 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=195.1
Q ss_pred cceeeEEecCCCCC--CCCHHHHHHHH---HhCCCCEEEEecCC----hHHHHHHHhCCCEEEEecCCcchhhHHhhHHH
Q 010789 41 VSGIGVNWGTQATH--PLPPSTVVRML---KDNGIDRVKLFDAD----SKYLNALANSGIQVMVGIPNEMLSTLASSVQA 111 (501)
Q Consensus 41 ~~~~GvnYg~~~~n--lps~~~vv~ll---k~~~i~~VRiY~~d----~~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~ 111 (501)
-+..+|+||++.++ ||+.+|+..+| ++.+ ..||+|.+| .+|++|+...|++|+||||..+..+-+.+. +
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~-t 120 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEK-T 120 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHH-H
Confidence 35789999999876 89999996654 4443 399999877 579999999999999999986532222121 1
Q ss_pred HHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCC
Q 010789 112 AENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLP 191 (501)
Q Consensus 112 A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~P 191 (501)
+..++.++.. ++.|++|+||||+|++ +.-.+++|+.+|.++|.+|+++|++ .||+|++.+.++.+ .|
T Consensus 121 ----il~ay~~~~~--~d~v~~v~VGnEal~r--~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-np-- 187 (305)
T COG5309 121 ----ILSAYLPYNG--WDDVTTVTVGNEALNR--NDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-NP-- 187 (305)
T ss_pred ----HHHHHhccCC--CCceEEEEechhhhhc--CCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC-Ch--
Confidence 4445677764 4899999999999986 3445899999999999999999996 57999999988876 22
Q ss_pred CCccccchhHHHHHHHHHHHhhcCCCceeecCCCcccCCCCCCCcccccccCCCCcccCCCccchhhHHhhhhHHHHHHH
Q 010789 192 SEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISLYNDPSFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQ 271 (501)
Q Consensus 192 S~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~i~ld~Alf~~~~~~~~d~~~~Y~nlfdaqvdav~~al~ 271 (501)
.+++..||+ |+|.||||+.+... ++. + .++--|++-++.+.
T Consensus 188 -----------~l~~~SDfi-------a~N~~aYwd~~~~a----------------~~~---~-~f~~~q~e~vqsa~- 228 (305)
T COG5309 188 -----------ELCQASDFI-------AANAHAYWDGQTVA----------------NAA---G-TFLLEQLERVQSAC- 228 (305)
T ss_pred -----------HHhhhhhhh-------hcccchhccccchh----------------hhh---h-HHHHHHHHHHHHhc-
Confidence 577788987 57999999975432 111 1 34545677666552
Q ss_pred HcCCCCccEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEeccccccccCCCCCccee
Q 010789 272 KNGFGNLSIIVGEIGWPTDGDKN----ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDEDAKSIQPGNFERH 347 (501)
Q Consensus 272 k~g~~~~~VvVsETGWPS~G~~~----AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE~wK~~~~g~~E~~ 347 (501)
| .+|+++|+||||||+|... ||++||+.|++++++.+++. ++++|+||+|||+||....-.+|+|
T Consensus 229 --g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~--------G~d~fvfeAFdd~WK~~~~y~VEky 297 (305)
T COG5309 229 --G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC--------GYDVFVFEAFDDDWKADGSYGVEKY 297 (305)
T ss_pred --C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc--------CccEEEeeeccccccCccccchhhc
Confidence 3 3499999999999999875 99999999999998776542 7899999999999998433269999
Q ss_pred eEeeecCC
Q 010789 348 WGLLYFDG 355 (501)
Q Consensus 348 wGlf~~d~ 355 (501)
||++..|+
T Consensus 298 wGv~~s~~ 305 (305)
T COG5309 298 WGVLSSDR 305 (305)
T ss_pred eeeeccCC
Confidence 99998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=1.8e-27 Score=199.30 Aligned_cols=83 Identities=48% Similarity=0.923 Sum_probs=80.7
Q ss_pred eeEEecCCCCCChHHHHHHhhcccCc-ccccccCCCCCCCC-CCcchhhhHHHHHHHhhcCCCCCCCCCCCceEEEecCC
Q 010789 382 KWCVMSPSASLDDPQVAASVSYACGN-ADCTSLGYGTSCGN-LDSRGNISYAFNSYYQINNQLDSACRFPNLSAVTTTNP 459 (501)
Q Consensus 382 ~~CV~k~~~~~~~~~l~~~ldyaCg~-~dC~~I~~~g~c~~-~~~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~~~~~~p 459 (501)
+|||+|+++ ++++|+++|||||++ +||++|++||+||+ |++++|||||||+|||+++++.++|||+|+|+++++||
T Consensus 1 ~wCv~~~~~--~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~p 78 (85)
T smart00768 1 LWCVAKPDA--DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDP 78 (85)
T ss_pred CccccCCCC--CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCC
Confidence 599999999 999999999999999 99999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCeee
Q 010789 460 STGDCLF 466 (501)
Q Consensus 460 s~~~C~~ 466 (501)
|+++|+|
T Consensus 79 s~~~C~~ 85 (85)
T smart00768 79 STGSCKF 85 (85)
T ss_pred CCCccCC
Confidence 9999976
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.84 E-value=2.3e-21 Score=159.65 Aligned_cols=70 Identities=37% Similarity=0.767 Sum_probs=60.3
Q ss_pred eeEEecCCCCCChHHHHHHhhcccCc--ccccccCCCCCC-----CC-CCcchhhhHHHHHHHhhcCCCCCCCCCCCceE
Q 010789 382 KWCVMSPSASLDDPQVAASVSYACGN--ADCTSLGYGTSC-----GN-LDSRGNISYAFNSYYQINNQLDSACRFPNLSA 453 (501)
Q Consensus 382 ~~CV~k~~~~~~~~~l~~~ldyaCg~--~dC~~I~~~g~c-----~~-~~~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~ 453 (501)
+|||+++++ ++++|+++|||||++ +||++|++||+. |+ |+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~--~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA--DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS---HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC--CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 999999999999999 999999999995 34 88999999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.39 E-value=4.9e-12 Score=128.21 Aligned_cols=134 Identities=19% Similarity=0.307 Sum_probs=78.8
Q ss_pred eeeEEecCCCC-------CCCCHHHH----HHHHHhCCCCEEEEecCCh-----HHHHHHHhCCCEEEEecCCcchhhHH
Q 010789 43 GIGVNWGTQAT-------HPLPPSTV----VRMLKDNGIDRVKLFDADS-----KYLNALANSGIQVMVGIPNEMLSTLA 106 (501)
Q Consensus 43 ~~GvnYg~~~~-------nlps~~~v----v~llk~~~i~~VRiY~~d~-----~vL~A~a~tgi~V~lGv~n~~~~~~a 106 (501)
..||.|-|-++ |+.+-.++ +.+||++|++.||+|..|| .+|++|++.||.|++.|.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 47999999766 32222233 5689999999999998883 699999999999999998762 2343
Q ss_pred hhHHHHHHHH-------HhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEccc
Q 010789 107 SSVQAAENWV-------AKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPL 179 (501)
Q Consensus 107 ~~~~~A~~Wv-------~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~ 179 (501)
++. -+..|- ..-|..+. +.+|+.+..+|||+++...+...++.+-.++|++|+.+++.++ ++|||+.+-
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa--~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa 183 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFA--KYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA 183 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHT--T-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhc--cCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc
Confidence 221 122341 22233332 2389999999999997643344578999999999999999998 679999875
Q ss_pred cc
Q 010789 180 NA 181 (501)
Q Consensus 180 ~~ 181 (501)
+.
T Consensus 184 aD 185 (314)
T PF03198_consen 184 AD 185 (314)
T ss_dssp --
T ss_pred cC
Confidence 43
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.83 E-value=4.5e-07 Score=94.03 Aligned_cols=246 Identities=18% Similarity=0.240 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCCEEEE--e-cC------C-h---HHHHHHHhCCCEEEEecCCcch---------h------hHHhhH
Q 010789 58 PSTVVRMLKDNGIDRVKL--F-DA------D-S---KYLNALANSGIQVMVGIPNEML---------S------TLASSV 109 (501)
Q Consensus 58 ~~~vv~llk~~~i~~VRi--Y-~~------d-~---~vL~A~a~tgi~V~lGv~n~~~---------~------~~a~~~ 109 (501)
..++.++||..|++.||+ | ++ | . ...+.+++.|++|+|..--+|- + ++++=.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999987766 3 11 2 2 3445567899999998875421 0 111111
Q ss_pred HHHHHHHHhhccccccCCCeeeEEEEeeccccCC--C--CCCCchHhHHHHHHHHHHHHHHcCCCCceEEEccccccccc
Q 010789 110 QAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLP--T--FNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQ 185 (501)
Q Consensus 110 ~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~--~--~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~ 185 (501)
.+..++.++-+... ...+..++.|-||||.-.. + .+..-.+.+...++...+++|+..- ++||-.-. .
T Consensus 106 ~~v~~yT~~vl~~l-~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~-----~ 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQAL-KAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHL-----A 177 (332)
T ss_dssp HHHHHHHHHHHHHH-HHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEE-----S
T ss_pred HHHHHHHHHHHHHH-HHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEE-----C
Confidence 23334444333332 2235778899999997432 1 0112246677777777788887554 35543211 1
Q ss_pred ccCCCCCCccccchhHHHHHHHHHHHhhc---CCCceeecCCCcccCCCCCCCcccccccCCCCcccCCCccchhhHHhh
Q 010789 186 SQSNLPSEGDFRTDIHDLMLQILKFLSDN---GGPFTVNIYPFISLYNDPSFPIDFAFFDSNSSPINDNGRVYENVFDAN 262 (501)
Q Consensus 186 ~s~p~PS~g~F~~~~~~~l~~~ldfL~~~---~sp~~vNiyPyf~~~~~~~i~ld~Alf~~~~~~~~d~~~~Y~nlfdaq 262 (501)
+ |... +.+.-..|-|... =+.+.++.||||.... +-+...
T Consensus 178 ~----~~~~-------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l--------------------------~~l~~~ 220 (332)
T PF07745_consen 178 N----GGDN-------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL--------------------------EDLKNN 220 (332)
T ss_dssp -----TTSH-------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H--------------------------HHHHHH
T ss_pred C----CCch-------HHHHHHHHHHHhcCCCcceEEEecCCCCcchH--------------------------HHHHHH
Confidence 0 1110 0111222222222 3567899999997510 122223
Q ss_pred hhHHHHHHHHcCCCCccEEEcccccCCCCCC-----------------CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 010789 263 YDTLVWALQKNGFGNLSIIVGEIGWPTDGDK-----------------NANLKFAQRFNQGFMSRVNAGKGTPMRSGAID 325 (501)
Q Consensus 263 vdav~~al~k~g~~~~~VvVsETGWPS~G~~-----------------~AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~ 325 (501)
++.+ .++ | +|+|+|.|||||..-.. .+|++.|++|++++++.+.+-.+. +++-
T Consensus 221 l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~----~g~G 290 (332)
T PF07745_consen 221 LNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNG----GGLG 290 (332)
T ss_dssp HHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--T----TEEE
T ss_pred HHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccC----CeEE
Confidence 3322 233 3 48999999999998111 168999999999999998763110 1445
Q ss_pred EEEEec-cccc---cccCCCC-CcceeeEeeecCCCeeee
Q 010789 326 AYLFSL-IDED---AKSIQPG-NFERHWGLLYFDGQPKYQ 360 (501)
Q Consensus 326 ~y~F~~-FDE~---wK~~~~g-~~E~~wGlf~~d~~~ky~ 360 (501)
+|+-|. .-.. |+.. .| ..|.. +||+.+|++--.
T Consensus 291 vfYWeP~w~~~~~~~~~~-~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWG-GGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEEE-TT-GGGTTHHHHT-TTSSSSBG-SSB-TTSBB-GG
T ss_pred EEeeccccccCCcccccC-CCCCcccc-ccCCCCCCCchH
Confidence 555442 2211 1111 22 33433 788888876433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=8.1e-06 Score=82.25 Aligned_cols=207 Identities=17% Similarity=0.261 Sum_probs=110.8
Q ss_pred CHHHHHHHHHhCCCCEEEE--e----cCC--------h------HHHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHH
Q 010789 57 PPSTVVRMLKDNGIDRVKL--F----DAD--------S------KYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWV 116 (501)
Q Consensus 57 s~~~vv~llk~~~i~~VRi--Y----~~d--------~------~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv 116 (501)
-..++.+.||.+|++.||+ | |.| . .+-+.+++.||||++..--+|-=+-...+..-.+|.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 3567889999999987665 4 444 1 234455689999999876653210000111112242
Q ss_pred -------Hhhcccc-------ccCCCeeeEEEEeeccccCC--CCCCCc--hHhHHHHHHHHHHHHHHcCCCCceEEEcc
Q 010789 117 -------AKNVSSH-------VSSNGVDIRYVAVGNEPFLP--TFNGTF--IGTTLPALQNIQAALIKAGLGTRIKVTVP 178 (501)
Q Consensus 117 -------~~~v~~y-------~p~~~~~I~~I~VGNEvl~~--~~~~~~--~~~Ll~am~nv~~aL~~~gl~~~IkVsT~ 178 (501)
+..|-.| ....+..+..|-||||.-.. +..++. ...+...++.-.+++|... ..|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE
Confidence 1222111 11234678889999997532 111221 2333344444444555433 34665432
Q ss_pred cccccccccCCCCCCccccchhHHHHHHHHHHHhhcC---CCceeecCCCcccCCCCCCCcccccccCCCCcccCCCccc
Q 010789 179 LNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNG---GPFTVNIYPFISLYNDPSFPIDFAFFDSNSSPINDNGRVY 255 (501)
Q Consensus 179 ~~~~vl~~s~p~PS~g~F~~~~~~~l~~~ldfL~~~~---sp~~vNiyPyf~~~~~~~i~ld~Alf~~~~~~~~d~~~~Y 255 (501)
+.+ | -..+.|+- +.|=|...+ +.|.+-.||||.+.-+. +++
T Consensus 222 -----la~--g-~~n~~y~~--------~fd~ltk~nvdfDVig~SyYpyWhgtl~n--------------------L~~ 265 (403)
T COG3867 222 -----LAE--G-ENNSLYRW--------IFDELTKRNVDFDVIGSSYYPYWHGTLNN--------------------LTT 265 (403)
T ss_pred -----ecC--C-CCCchhhH--------HHHHHHHcCCCceEEeeeccccccCcHHH--------------------HHh
Confidence 221 1 12233431 122223222 34567889999873221 111
Q ss_pred hhhHHhhhhHHHHHHHHcCCCCccEEEccccc--------------CCCCCC---CCCHHHHHHHHHHHHHHHHh
Q 010789 256 ENVFDANYDTLVWALQKNGFGNLSIIVGEIGW--------------PTDGDK---NANLKFAQRFNQGFMSRVNA 313 (501)
Q Consensus 256 ~nlfdaqvdav~~al~k~g~~~~~VvVsETGW--------------PS~G~~---~AS~~Na~~y~~~li~~~~s 313 (501)
| ++.+. . -| +|.|+|.||+. |+.+.. ..+++.|++|.+++|+.+..
T Consensus 266 -n-----l~dia---~--rY-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 266 -N-----LNDIA---S--RY-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred -H-----HHHHH---H--Hh-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 1 22221 1 12 58999999998 666543 27889999999999999875
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.03 E-value=0.00067 Score=76.01 Aligned_cols=256 Identities=16% Similarity=0.113 Sum_probs=137.8
Q ss_pred eeeEEecCCC---CCCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCcc-------------
Q 010789 43 GIGVNWGTQA---THPLPPSTV---VRMLKDNGIDRVKLFD--ADSKYLNALANSGIQVMVGIPNEM------------- 101 (501)
Q Consensus 43 ~~GvnYg~~~---~nlps~~~v---v~llk~~~i~~VRiY~--~d~~vL~A~a~tgi~V~lGv~n~~------------- 101 (501)
..|+|+=... ..-++.+.. +++||+.|++.||+-. .++..+.++-..||-|+.=++...
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 4588764321 112344443 5678999999999942 357899999999999986553210
Q ss_pred --hhhHH------hhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCce
Q 010789 102 --LSTLA------SSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRI 173 (501)
Q Consensus 102 --~~~~a------~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~I 173 (501)
..... +..+...+-+++.|..+... ..|..=.+|||.-.. . +.....++.+.+.+++..=.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH--PSIi~Ws~gNE~~~~---~---~~~~~~~~~l~~~~k~~DptR-- 443 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNH--PSVVMWSIANEPASR---E---QGAREYFAPLAELTRKLDPTR-- 443 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCC--ceEEEEeeccCCCcc---c---hhHHHHHHHHHHHHHhhCCCC--
Confidence 00010 01112222245556655432 567788999996421 1 123344555556666555333
Q ss_pred EEEcccccccccccCCCCCCccccchhHHHHHHHHHHHhhcCCCceeecCC-CcccCCCCCCCcccccccCCCCcccCCC
Q 010789 174 KVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYP-FISLYNDPSFPIDFAFFDSNSSPINDNG 252 (501)
Q Consensus 174 kVsT~~~~~vl~~s~p~PS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyP-yf~~~~~~~i~ld~Alf~~~~~~~~d~~ 252 (501)
+|+.+..+. . . |... .+.+.+|+++ .|.|+ |+....+ .+
T Consensus 444 ~vt~~~~~~---~-~--~~~~--------~~~~~~Dv~~-------~N~Y~~wy~~~~~------~~------------- 483 (604)
T PRK10150 444 PVTCVNVMF---A-T--PDTD--------TVSDLVDVLC-------LNRYYGWYVDSGD------LE------------- 483 (604)
T ss_pred ceEEEeccc---C-C--cccc--------cccCcccEEE-------EcccceecCCCCC------HH-------------
Confidence 355543211 0 1 1111 1223467664 58764 2221100 00
Q ss_pred ccchhhHHhhhhHHHHHHHHcCCCCccEEEcccccCCCC------CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccE
Q 010789 253 RVYENVFDANYDTLVWALQKNGFGNLSIIVGEIGWPTDG------DKNANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDA 326 (501)
Q Consensus 253 ~~Y~nlfdaqvdav~~al~k~g~~~~~VvVsETGWPS~G------~~~AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~ 326 (501)
.....++..++.. .++ + ++|++++|.|+.+.- ...-|.+.|..|++...+.+.+ +|.-.-.
T Consensus 484 -~~~~~~~~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~~~G~ 550 (604)
T PRK10150 484 -TAEKVLEKELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPAVVGE 550 (604)
T ss_pred -HHHHHHHHHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCceEEE
Confidence 0112223233211 111 3 799999999976531 1225688888888877666543 3445668
Q ss_pred EEEeccccccccCCCCCcceeeEeeecCCCeeeee
Q 010789 327 YLFSLIDEDAKSIQPGNFERHWGLLYFDGQPKYQL 361 (501)
Q Consensus 327 y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~~ky~l 361 (501)
|+..+||-.........-..+.||++.||+||-..
T Consensus 551 ~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 551 QVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred EEEeeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 88999995544211001124789999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.86 E-value=0.0029 Score=62.70 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=80.1
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHHHhCCCEEEEecCCcc-
Q 010789 43 GIGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDA-------------D-------SKYLNALANSGIQVMVGIPNEM- 101 (501)
Q Consensus 43 ~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~-------------d-------~~vL~A~a~tgi~V~lGv~n~~- 101 (501)
..|+|-. ..++. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566665 22112 6788899999999999999721 1 2578888999999999987630
Q ss_pred ---hhhHHhhHHHHHHHHHh---hccccccCCCeeeEEEEeeccccCCCCCCC----chHhHHHHHHHHHHHHHHcCCCC
Q 010789 102 ---LSTLASSVQAAENWVAK---NVSSHVSSNGVDIRYVAVGNEPFLPTFNGT----FIGTTLPALQNIQAALIKAGLGT 171 (501)
Q Consensus 102 ---~~~~a~~~~~A~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~----~~~~Ll~am~nv~~aL~~~gl~~ 171 (501)
............+|+++ .+...+.. ...|.++=+.||+........ ....+.+.++.+.+++++.+-..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKD-NPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT-TTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCC-CCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 01111111222223222 23333321 246789999999986421100 13567889999999999998764
Q ss_pred ceEEE
Q 010789 172 RIKVT 176 (501)
Q Consensus 172 ~IkVs 176 (501)
.|-|+
T Consensus 167 ~i~~~ 171 (281)
T PF00150_consen 167 LIIVG 171 (281)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 44344
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.40 E-value=0.022 Score=56.94 Aligned_cols=78 Identities=15% Similarity=0.007 Sum_probs=52.4
Q ss_pred HHHHHHcCCCCccEEEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecccc-ccccCCCCCcc
Q 010789 267 VWALQKNGFGNLSIIVGEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDE-DAKSIQPGNFE 345 (501)
Q Consensus 267 ~~al~k~g~~~~~VvVsETGWPS~G~~~AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~g~~E 345 (501)
...|++.+--+++|.|||.+-|..+ +.+.|+.+++++++.+.+. |.....++..+.|. .|.+ +
T Consensus 172 ~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~v~gi~~Wg~~d~~~W~~------~ 235 (254)
T smart00633 172 RAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PAVTGVTVWGVTDKYSWLD------G 235 (254)
T ss_pred HHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CCeeEEEEeCCccCCcccC------C
Confidence 3444444434799999999998753 4488899999999888763 22233445555553 3542 2
Q ss_pred eeeEeeecCCCeeee
Q 010789 346 RHWGLLYFDGQPKYQ 360 (501)
Q Consensus 346 ~~wGlf~~d~~~ky~ 360 (501)
.+-|||+.|++||-.
T Consensus 236 ~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 GAPLLFDANYQPKPA 250 (254)
T ss_pred CCceeECCCCCCChh
Confidence 467999999988853
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.25 E-value=0.21 Score=49.70 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=46.5
Q ss_pred ccEEEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEeccccccccCCCCCcceeeEeeecCCCe
Q 010789 278 LSIIVGEIGWPTDGDKNANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDEDAKSIQPGNFERHWGLLYFDGQP 357 (501)
Q Consensus 278 ~~VvVsETGWPS~G~~~AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~~ 357 (501)
+||+|||.|+.. +....+.+.++.|.+..+..+.+. +.--.++||. |...+. ....+-.|++.+|++
T Consensus 166 kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~VeryawF~-~~~~~~-----~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 166 KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PYVERYAWFG-FMNDGS-----GVNPNSALLDADGSL 232 (239)
T ss_pred CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CCeeEEEecc-cccccC-----CCccccccccCCCCc
Confidence 899999999876 334488999999999999888753 2234577887 333322 245555677777653
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=94.75 E-value=7.5 Score=42.08 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=43.6
Q ss_pred CCCccEEEcccccCCCCCC-C--CCHHHHHHHHHHHHHHHHh--CCCCCCCCCCccEEEEecccc-ccccCCCCCcceee
Q 010789 275 FGNLSIIVGEIGWPTDGDK-N--ANLKFAQRFNQGFMSRVNA--GKGTPMRSGAIDAYLFSLIDE-DAKSIQPGNFERHW 348 (501)
Q Consensus 275 ~~~~~VvVsETGWPS~G~~-~--AS~~Na~~y~~~li~~~~s--~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~g~~E~~w 348 (501)
|++.||+|||.|+...... . -.-+.-..|++.-++.+.. ..|.+.+ -++.-++.|- .|.. +..+.|
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~----GY~~Wsl~Dn~ew~~----gy~~rf 406 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVR----GYFVWSLLDNFEWAE----GYSKRF 406 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEE----EEEecccccccchhc----cccccc
Confidence 5556899999999753211 0 1111223344444443332 2366544 4777778774 2542 378999
Q ss_pred EeeecCCC
Q 010789 349 GLLYFDGQ 356 (501)
Q Consensus 349 Glf~~d~~ 356 (501)
||++.|.+
T Consensus 407 Gl~~VD~~ 414 (427)
T TIGR03356 407 GLVHVDYE 414 (427)
T ss_pred ceEEECCC
Confidence 99998865
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.13 E-value=4 Score=41.51 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=54.0
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCcch---hhH------
Q 010789 43 GIGVNWGTQATH---PLPPSTV---VRMLKDNGIDRVKLFD--ADSKYLNALANSGIQVMVGIPNEML---STL------ 105 (501)
Q Consensus 43 ~~GvnYg~~~~n---lps~~~v---v~llk~~~i~~VRiY~--~d~~vL~A~a~tgi~V~lGv~n~~~---~~~------ 105 (501)
..|||+...... .++.+++ ++++|+.|++.||+.. .++..+.++-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 569998875322 3455554 4578999999999964 3478999999999999987765110 000
Q ss_pred ---HhhHHHHHHHHHhhccccccCCCeeeEEEEeeccc
Q 010789 106 ---ASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEP 140 (501)
Q Consensus 106 ---a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEv 140 (501)
....+.+.+-+++.|..+... ..|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NH--PSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNH--PSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCc--CchheeecCccC
Confidence 011122223345555555422 457678899998
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=87.90 E-value=28 Score=42.04 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=56.8
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEecC--ChHHHHHHHhCCCEEEEecCCcch--------hhHH
Q 010789 43 GIGVNWGTQAT---HPLPPSTV---VRMLKDNGIDRVKLFDA--DSKYLNALANSGIQVMVGIPNEML--------STLA 106 (501)
Q Consensus 43 ~~GvnYg~~~~---nlps~~~v---v~llk~~~i~~VRiY~~--d~~vL~A~a~tgi~V~lGv~n~~~--------~~~a 106 (501)
..|+|+-.... ...+++++ ++++|+.|++.||+-.- ++..+.++-+.||-|+--+..+.. ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 46888654321 12345544 56789999999998632 367899999999999875432100 0011
Q ss_pred hhH---HHHHHHHHhhccccccCCCeeeEEEEeecccc
Q 010789 107 SSV---QAAENWVAKNVSSHVSSNGVDIRYVAVGNEPF 141 (501)
Q Consensus 107 ~~~---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 141 (501)
.++ .+..+-+++.|.+.... ..|..-++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNH--PSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNH--PSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCC--CEEEEEECccCcc
Confidence 111 11122244555555322 5677888999974
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=80.21 E-value=5.4 Score=42.09 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCEEEEecC-------C---------hHHHHHHHhCCCEEEEecCCcchhhH-----------------
Q 010789 59 STVVRMLKDNGIDRVKLFDA-------D---------SKYLNALANSGIQVMVGIPNEMLSTL----------------- 105 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRiY~~-------d---------~~vL~A~a~tgi~V~lGv~n~~~~~~----------------- 105 (501)
++.++++|..|++.|||-.. . ..+|..+++.||+|+|+++....+..
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 45677889999999998422 1 35888889999999999975311110
Q ss_pred ---------H-hh---HHHHHHHHHhhccccccCCCeeeEEEEeeccccC
Q 010789 106 ---------A-SS---VQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFL 142 (501)
Q Consensus 106 ---------a-~~---~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~ 142 (501)
. .+ ...+.+.++..+..|-. ...|.++.|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~--~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGD--HPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccc--cceEEEEEeccccCc
Confidence 0 01 22345555554455532 257899999999764
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=79.64 E-value=1.3 Score=48.20 Aligned_cols=117 Identities=20% Similarity=0.283 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCCEEEEe--------c-----CC-------hHHHHHHHhCCCEEEEecCCcchhhHHh------hHHHH
Q 010789 59 STVVRMLKDNGIDRVKLF--------D-----AD-------SKYLNALANSGIQVMVGIPNEMLSTLAS------SVQAA 112 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRiY--------~-----~d-------~~vL~A~a~tgi~V~lGv~n~~~~~~a~------~~~~A 112 (501)
++-+++||++|++.-|.= + .| .+++..|.+.||+.+|.+.--+++..-. +...+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 456889999999999874 1 12 3689999999999999998655544211 11111
Q ss_pred HHHHH---hhccccccCCCeeeEEEEeeccccCCC---C------CC-Cc-------hHhHHHHHHHHHHHHHHcCCCCc
Q 010789 113 ENWVA---KNVSSHVSSNGVDIRYVAVGNEPFLPT---F------NG-TF-------IGTTLPALQNIQAALIKAGLGTR 172 (501)
Q Consensus 113 ~~Wv~---~~v~~y~p~~~~~I~~I~VGNEvl~~~---~------~~-~~-------~~~Ll~am~nv~~aL~~~gl~~~ 172 (501)
.|.. +.|...+ ++.|+.-+.=||...-. | .+ .. ...++-|-..+.+++++..-.
T Consensus 141 -~~F~~Ya~~~~~~~---gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~-- 214 (455)
T PF00232_consen 141 -DWFARYAEFVFERF---GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD-- 214 (455)
T ss_dssp -HHHHHHHHHHHHHH---TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--
T ss_pred -HHHHHHHHHHHHHh---CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--
Confidence 1211 1122222 25788888889975321 0 11 11 223555555566677776643
Q ss_pred eEEEccccc
Q 010789 173 IKVTVPLNA 181 (501)
Q Consensus 173 IkVsT~~~~ 181 (501)
.+|+..++.
T Consensus 215 ~~IGi~~~~ 223 (455)
T PF00232_consen 215 GKIGIALNF 223 (455)
T ss_dssp SEEEEEEEE
T ss_pred eEEeccccc
Confidence 456665544
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=78.46 E-value=14 Score=39.03 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCCEEEEec-CChHHHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCC
Q 010789 69 GIDRVKLFD-ADSKYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNG 147 (501)
Q Consensus 69 ~i~~VRiY~-~d~~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~ 147 (501)
.+++|-+|+ .|++++..+...|++|++..-.. .. ..+++..-.+|+++. ..+... -...+|-+==|-.... ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~si-v~~~~~--~gfDGIdIDwE~p~~~-~~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQK-VELAKS--QFMDGINIDIEQPITK-GS 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHH-HHHHHH--hCCCeEEEcccCCCCC-Cc
Confidence 478888885 46899999999999999864322 12 223444444454443 222221 2334444444433211 11
Q ss_pred CchHhHHHHHHHHHHHHHHcCC
Q 010789 148 TFIGTTLPALQNIQAALIKAGL 169 (501)
Q Consensus 148 ~~~~~Ll~am~nv~~aL~~~gl 169 (501)
.-...+..-|+++|++|++.+.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENP 150 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCC
Confidence 1135678889999999998754
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=75.28 E-value=11 Score=39.47 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHHHhh---ccccccCCCeeeEEEEeeccccCCCCCCCc-hHhHHHHH
Q 010789 82 YLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKN---VSSHVSSNGVDIRYVAVGNEPFLPTFNGTF-IGTTLPAL 157 (501)
Q Consensus 82 vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~---v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~Ll~am 157 (501)
+-+-+..+|.+|+.|+---.-.....+...--.|--+| +.+|.-.++-+|.+-=.|||.--.+..... +.++....
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 33444579999999986321111111223345676666 455543334468888899996532111111 56777777
Q ss_pred HHHHHHHHHc
Q 010789 158 QNIQAALIKA 167 (501)
Q Consensus 158 ~nv~~aL~~~ 167 (501)
..+|+.|++.
T Consensus 194 ~~Lr~il~~i 203 (319)
T PF03662_consen 194 IQLRKILNEI 203 (319)
T ss_dssp ---HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778877653
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=73.70 E-value=1.5e+02 Score=32.65 Aligned_cols=249 Identities=17% Similarity=0.231 Sum_probs=106.3
Q ss_pred HHHHHhCCCCEEEEecC---C--------------------hHHHHHHHhCCCEEEEecCC--cchh-----hH------
Q 010789 62 VRMLKDNGIDRVKLFDA---D--------------------SKYLNALANSGIQVMVGIPN--EMLS-----TL------ 105 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~---d--------------------~~vL~A~a~tgi~V~lGv~n--~~~~-----~~------ 105 (501)
..+.+..||+.||+... | ..++..+.+.||+-+|-+.- ..+. .+
T Consensus 46 ~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 46 RELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp HHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-
T ss_pred HHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCc
Confidence 33445679999998732 1 25888899999997665532 1110 00
Q ss_pred --HhhHHHH----HHHHHhhccccccCCCeeeE--EEEeeccccCCCC-CCCchHhHHHHHHHHHHHHHHcCCCCceEEE
Q 010789 106 --ASSVQAA----ENWVAKNVSSHVSSNGVDIR--YVAVGNEPFLPTF-NGTFIGTTLPALQNIQAALIKAGLGTRIKVT 176 (501)
Q Consensus 106 --a~~~~~A----~~Wv~~~v~~y~p~~~~~I~--~I~VGNEvl~~~~-~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVs 176 (501)
..+...- .++++.-+.+|-- ..|+ ..=|=||+=.... ......+-....+.+.++|++.. ..+||+
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG~---~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vG 200 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYGI---EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVG 200 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHHH---HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcCC---ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCccc
Confidence 0111221 2223322333311 1121 4557899643311 11123455667777888888875 458898
Q ss_pred cccccccccccCCCCCCccccchhHHHHHHHHHHHhhcCCCc---eeecCCCcccCCCCCCCcccccccCCCCcccCCCc
Q 010789 177 VPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPF---TVNIYPFISLYNDPSFPIDFAFFDSNSSPINDNGR 253 (501)
Q Consensus 177 T~~~~~vl~~s~p~PS~g~F~~~~~~~l~~~ldfL~~~~sp~---~vNiyPyf~~~~~~~i~ld~Alf~~~~~~~~d~~~ 253 (501)
-|... +. . ...+...++|+...+.|+ -.|.||+=...... .. ....-.
T Consensus 201 Gp~~~--~~--~------------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~------------~~-~~~~~~ 251 (486)
T PF01229_consen 201 GPAFA--WA--Y------------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN------------EN-MYERIE 251 (486)
T ss_dssp EEEEE--TT---------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S------------S--EEEEB-
T ss_pred Ccccc--cc--H------------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccc------------hh-HHhhhh
Confidence 77110 00 0 123555667776654433 23444432110000 00 000000
Q ss_pred cchhhHHhhhhHHHHHHHHcCCCCccEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE-
Q 010789 254 VYENVFDANYDTLVWALQKNGFGNLSIIVGEIGWPTDGDKN----ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYL- 328 (501)
Q Consensus 254 ~Y~nlfdaqvdav~~al~k~g~~~~~VvVsETGWPS~G~~~----AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~- 328 (501)
....+++ ++..+...+...+.|++++.++| |.+.-... -|.-+|+-..+++++.... .++.|-
T Consensus 252 ~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~---------~l~~~sy 319 (486)
T PF01229_consen 252 DSRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA---------FLDSFSY 319 (486)
T ss_dssp -HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG---------T-SEEEE
T ss_pred hHHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh---------hhhhhhc
Confidence 0111222 22233344555678999999999 87764432 5555665555555555432 123321
Q ss_pred --E-eccccccccCCCCCcceeeEeeecCCCee
Q 010789 329 --F-SLIDEDAKSIQPGNFERHWGLLYFDGQPK 358 (501)
Q Consensus 329 --F-~~FDE~wK~~~~g~~E~~wGlf~~d~~~k 358 (501)
| ..|.|+--+ ...+-.-|||+..+|-+|
T Consensus 320 wt~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 1 123333221 113556699999998555
No 20
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=66.84 E-value=6.5 Score=37.07 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEec
Q 010789 61 VVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGI 97 (501)
Q Consensus 61 vv~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv 97 (501)
-+|+|+.+|+++||+.+.+|.=+.++.+.||+|.=-+
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 3788999999999999999999999999999987444
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=64.76 E-value=12 Score=40.98 Aligned_cols=46 Identities=7% Similarity=0.264 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCEEEE-------e--c---CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------F--D---AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y--~---~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
+|-++|||++|++.-|. + + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 56688999998877765 2 1 13 3689999999999999998766654
No 22
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.03 E-value=22 Score=37.86 Aligned_cols=57 Identities=11% Similarity=0.352 Sum_probs=39.9
Q ss_pred chhhHHhhhhHHHHHHHHcCCCCccEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHhC
Q 010789 255 YENVFDANYDTLVWALQKNGFGNLSIIVGEIGWPTDGDKN------ANLKFAQRFNQGFMSRVNAG 314 (501)
Q Consensus 255 Y~nlfdaqvdav~~al~k~g~~~~~VvVsETGWPS~G~~~------AS~~Na~~y~~~li~~~~s~ 314 (501)
|.|-|++-+.-........|++..+|+.| |||.|.-- .|..-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 66667655544434455678888999987 99999851 66666677777788877654
No 23
>PLN02814 beta-glucosidase
Probab=62.52 E-value=15 Score=40.74 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=43.7
Q ss_pred CCCccEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecccc-ccccCCCCCcceeeE
Q 010789 275 FGNLSIIVGEIGWPTDGDKN----ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDE-DAKSIQPGNFERHWG 349 (501)
Q Consensus 275 ~~~~~VvVsETGWPS~G~~~----AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~g~~E~~wG 349 (501)
|++.||+|||-|++...+.. --++--+.+++.+.+.+. .|.|.+ -+|.-++.|- .|.. +.++.||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V~----GY~~WSllDnfEW~~----Gy~~RfG 454 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDTR----GYFVWSMIDLYELLG----GYTTSFG 454 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCccc
Confidence 55668999999997542211 122223344444434442 366654 4777778773 3542 3799999
Q ss_pred eeecCCC
Q 010789 350 LLYFDGQ 356 (501)
Q Consensus 350 lf~~d~~ 356 (501)
|++.|..
T Consensus 455 LvyVD~~ 461 (504)
T PLN02814 455 MYYVNFS 461 (504)
T ss_pred eEEECCC
Confidence 9998765
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=60.69 E-value=30 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhCCCEEEEecCC
Q 010789 56 LPPSTVVRMLKDNGIDRVKLFDAD-----SKYLNALANSGIQVMVGIPN 99 (501)
Q Consensus 56 ps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~a~tgi~V~lGv~n 99 (501)
-+++++++..+++|++.|=+=|-+ +...+.+++.||+++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468899999999999999887666 45566667899999999854
No 25
>PRK09936 hypothetical protein; Provisional
Probab=56.02 E-value=93 Score=32.21 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=43.9
Q ss_pred ceeeEEecCCCCC-CCCHHHHHH---HHHhCCCCEEEE-e----cCC--------hHHHHHHHhCCCEEEEecCCcc
Q 010789 42 SGIGVNWGTQATH-PLPPSTVVR---MLKDNGIDRVKL-F----DAD--------SKYLNALANSGIQVMVGIPNEM 101 (501)
Q Consensus 42 ~~~GvnYg~~~~n-lps~~~vv~---llk~~~i~~VRi-Y----~~d--------~~vL~A~a~tgi~V~lGv~n~~ 101 (501)
+..|+=|-|...| --++++--+ .++..|++.+=+ | +.| ...|.++.+.||+|.||++-|.
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 4567889999877 456766554 566788876644 2 223 4688888999999999999874
No 26
>PLN02849 beta-glucosidase
Probab=55.18 E-value=21 Score=39.63 Aligned_cols=72 Identities=19% Similarity=0.415 Sum_probs=43.7
Q ss_pred CCCccEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecccc-ccccCCCCCccee
Q 010789 275 FGNLSIIVGEIGWPTDGDKN------ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDE-DAKSIQPGNFERH 347 (501)
Q Consensus 275 ~~~~~VvVsETGWPS~G~~~------AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~g~~E~~ 347 (501)
|++.||+|||-|++...... --++--+.+++.+.+.+. .|.+.+ -+|.-++.|- .|.. +.++.
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V~----GY~~WSl~DnfEW~~----Gy~~R 452 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDTR----GYFVWSFMDLYELLK----GYEFS 452 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCc
Confidence 55568999999998643211 122233344444444442 366554 4777777773 2442 37899
Q ss_pred eEeeecCCC
Q 010789 348 WGLLYFDGQ 356 (501)
Q Consensus 348 wGlf~~d~~ 356 (501)
|||++.|..
T Consensus 453 fGLi~VD~~ 461 (503)
T PLN02849 453 FGLYSVNFS 461 (503)
T ss_pred cceEEECCC
Confidence 999998765
No 27
>PLN02998 beta-glucosidase
Probab=55.01 E-value=18 Score=40.08 Aligned_cols=72 Identities=25% Similarity=0.488 Sum_probs=44.1
Q ss_pred CCCccEEEcccccCCCCCC--C--CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecccc-ccccCCCCCcceeeE
Q 010789 275 FGNLSIIVGEIGWPTDGDK--N--ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDE-DAKSIQPGNFERHWG 349 (501)
Q Consensus 275 ~~~~~VvVsETGWPS~G~~--~--AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~g~~E~~wG 349 (501)
|++.+|+|||-|+....+. . --++--+.+++.+.+.+. .|.+.+ -+|.-++.|- .|.. +.++.||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V~----GY~~WSl~DnfEW~~----Gy~~RfG 459 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDVK----GYFQWSLMDVFELFG----GYERSFG 459 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCccc
Confidence 5555899999999875311 0 222233444444444443 466544 4777777773 3542 3789999
Q ss_pred eeecCCC
Q 010789 350 LLYFDGQ 356 (501)
Q Consensus 350 lf~~d~~ 356 (501)
|++.|.+
T Consensus 460 Lv~VD~~ 466 (497)
T PLN02998 460 LLYVDFK 466 (497)
T ss_pred eEEECCC
Confidence 9998765
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=54.46 E-value=85 Score=38.06 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=57.7
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCcch-----hhHHhhH
Q 010789 43 GIGVNWGTQAT---HPLPPSTV---VRMLKDNGIDRVKLFD--ADSKYLNALANSGIQVMVGIPNEML-----STLASSV 109 (501)
Q Consensus 43 ~~GvnYg~~~~---nlps~~~v---v~llk~~~i~~VRiY~--~d~~vL~A~a~tgi~V~lGv~n~~~-----~~~a~~~ 109 (501)
..|+|+-.... .-.+++++ ++++|+.|++.||+-. .++..+..+-..||-|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 45888754321 22455554 5678999999999943 2478899999999999877543210 0011111
Q ss_pred ---HHHHHHHHhhccccccCCCeeeEEEEeecccc
Q 010789 110 ---QAAENWVAKNVSSHVSSNGVDIRYVAVGNEPF 141 (501)
Q Consensus 110 ---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 141 (501)
.+..+-+++.|.+.... ..|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNH--PSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNH--PSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCC--CEEEEEeCccCCC
Confidence 11122234445554322 5677889999963
No 29
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=53.72 E-value=21 Score=34.41 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=30.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVM 94 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 94 (501)
.|+|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999987
No 30
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.22 E-value=21 Score=34.55 Aligned_cols=33 Identities=33% Similarity=0.648 Sum_probs=30.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVM 94 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 94 (501)
+|+|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999997
No 31
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=53.01 E-value=35 Score=34.92 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=49.4
Q ss_pred hHHHHHHHhCCCEEEEecCCcc--------hhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchH
Q 010789 80 SKYLNALANSGIQVMVGIPNEM--------LSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIG 151 (501)
Q Consensus 80 ~~vL~A~a~tgi~V~lGv~n~~--------~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~ 151 (501)
+.++.++++.++||++.|.+.+ ...+.+++..-.++++ ++..+... -.+.+|-+-=|.+. .+...
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~--~~~DGidiDwE~~~----~~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKK--YGYDGVNIDFENVP----PEDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHH--hCCCcEEEecccCC----HHHHH
Confidence 5788888888999998887532 1234444433333333 33333321 13445555556552 12245
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 010789 152 TTLPALQNIQAALIKAGL 169 (501)
Q Consensus 152 ~Ll~am~nv~~aL~~~gl 169 (501)
....-|+.+|++|.+.++
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 688889999999987775
No 32
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=49.24 E-value=40 Score=31.78 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=44.9
Q ss_pred HHHHHHHhC--CCEEEEecCCcchh---hHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHH
Q 010789 81 KYLNALANS--GIQVMVGIPNEMLS---TLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLP 155 (501)
Q Consensus 81 ~vL~A~a~t--gi~V~lGv~n~~~~---~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~ 155 (501)
.-++.+++. |+||++.+...... .+..+....+++++ ++..+... -++.+|-+==|..... .......++.
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~--~~~DGidiD~E~~~~~-~~~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKT--YGFDGVDIDWEYPGAA-DNSDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHH--cCCCceEEeeeCCCCc-CccHHHHHHH
Confidence 445666654 99999888764322 13344443333332 23333221 2334444433543211 1012467899
Q ss_pred HHHHHHHHHHHcCC
Q 010789 156 ALQNIQAALIKAGL 169 (501)
Q Consensus 156 am~nv~~aL~~~gl 169 (501)
.|+.+|++|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987654
No 33
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=47.99 E-value=1.9e+02 Score=30.10 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCCEEEEecC--Cc---chhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCC-CCCCCchHhHHHHHHHHHH
Q 010789 89 SGIQVMVGIP--NE---MLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLP-TFNGTFIGTTLPALQNIQA 162 (501)
Q Consensus 89 tgi~V~lGv~--n~---~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~-~~~~~~~~~Ll~am~nv~~ 162 (501)
.++||++.|- .. ....+.+++..-.+++++ +..+... -.+.+|-+==|.... +...+....++..|+.+|+
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~--~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRK--YGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHH--cCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH
Confidence 5899887774 22 223344444443444333 2222221 123334333333211 0011124568889999999
Q ss_pred HHHHc
Q 010789 163 ALIKA 167 (501)
Q Consensus 163 aL~~~ 167 (501)
+|++.
T Consensus 146 ~l~~~ 150 (362)
T cd02872 146 AFEPE 150 (362)
T ss_pred HHHhh
Confidence 99987
No 34
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=47.97 E-value=43 Score=36.92 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------FD------AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
++-++|||++|++.-|. +- .| .+++.+|.+.||+-+|.++--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 56688999998877764 31 23 3688999999999999998766654
No 35
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.57 E-value=52 Score=32.49 Aligned_cols=41 Identities=22% Similarity=0.491 Sum_probs=25.4
Q ss_pred HHHcCCCCccEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHh
Q 010789 270 LQKNGFGNLSIIVGEIGWPTDGDKN------ANLKFAQRFNQGFMSRVNA 313 (501)
Q Consensus 270 l~k~g~~~~~VvVsETGWPS~G~~~------AS~~Na~~y~~~li~~~~s 313 (501)
...+++++.+|+. .|||.|... .+...++..+.++++.+..
T Consensus 42 ~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3456777766655 599999752 4444445555666666654
No 36
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=46.43 E-value=3.6e+02 Score=28.80 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcCCCceeecCCCccc
Q 010789 202 DLMLQILKFLSDNGGPFTVNIYPFISL 228 (501)
Q Consensus 202 ~~l~~~ldfL~~~~sp~~vNiyPyf~~ 228 (501)
+.+...++|+.+.+ +-.+++|||--.
T Consensus 305 ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 305 EDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 45677889988765 445787776544
No 37
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=43.01 E-value=37 Score=32.64 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=30.4
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVM 94 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 94 (501)
.|+|+.+|+++||+.+..+.=+.+|.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999997
No 38
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=41.36 E-value=46 Score=36.72 Aligned_cols=46 Identities=9% Similarity=0.284 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------FD------AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
++-++|||++|++.-|+ +- .| .+++.++.+.||+.+|.+.=-+++.
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~ 137 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPL 137 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 56688999988777664 31 23 3689999999999999996545443
No 39
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.05 E-value=32 Score=36.67 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVM 94 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 94 (501)
.|+|+.+|+++||+. .+|.=+.+|.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 789999999999999 67888889999999987
No 40
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=40.63 E-value=3.6e+02 Score=26.38 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHHHhCCCEEEEecCCcc---h--hhHHhhHHHHHHHHHhh
Q 010789 56 LPPSTVVRMLKDNGIDRVKLFDAD-----------SKYLNALANSGIQVMVGIPNEM---L--STLASSVQAAENWVAKN 119 (501)
Q Consensus 56 ps~~~vv~llk~~~i~~VRiY~~d-----------~~vL~A~a~tgi~V~lGv~n~~---~--~~~a~~~~~A~~Wv~~~ 119 (501)
|++ ...+.||+.++..|=.|=.+ +.=++.+...|++|+. |++.. . ...+.-...|.+=++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 554 55677788888777777332 3457778889998765 44422 1 11222333443334444
Q ss_pred ccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCC
Q 010789 120 VSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLG 170 (501)
Q Consensus 120 v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~ 170 (501)
..--.|. ..+.++.|=.... ..+....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~--gs~IYfavD~d~~----~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPP--GTIIYFAVDFDAL----DDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCC--CCEEEEEeecCCC----cchhHHHHHHHHHHHHHHHHhcCCc
Confidence 4334554 3455777766554 2334578999999999999999873
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=40.27 E-value=67 Score=35.39 Aligned_cols=46 Identities=11% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------FD------AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
++-++|||++|++.-|. +- .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 45688999988877764 31 23 3689999999999999998766654
No 42
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=39.42 E-value=58 Score=31.49 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCccccchhHHHHHHHHHHHhhcCCCceeecC-CCcccCCCC
Q 010789 154 LPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIY-PFISLYNDP 232 (501)
Q Consensus 154 l~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiy-Pyf~~~~~~ 232 (501)
-.+++.+.+.+...|+.+ |++....... + |.. .....++.+.+.+.+-|+++|+- +.+..
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~-----~--~~~-------~~~~~~~~~~~~~~~~pv~~H~g~~~~~~---- 144 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGF-----D--PDD-------PRLDDPIFEAAEELGLPVLIHTGMTGFPD---- 144 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTC-----C--TTS-------GHCHHHHHHHHHHHT-EEEEEESHTHHHH----
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcc-----c--ccc-------HHHHHHHHHHHHhhccceeeeccccchhh----
Confidence 357788888888888865 7766533211 1 111 11224788889988988888843 11100
Q ss_pred CCCcccccccCCCCcccCCCccchhhHHhhhhHHHHHHHHcCCCCccEEEcccccC
Q 010789 233 SFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSIIVGEIGWP 288 (501)
Q Consensus 233 ~i~ld~Alf~~~~~~~~d~~~~Y~nlfdaqvdav~~al~k~g~~~~~VvVsETGWP 288 (501)
+ ..-..+...+...+++ +|+++|++.+.|+|
T Consensus 145 ----------------------~-~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 145 ----------------------A-PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp ----------------------H-HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred ----------------------h-hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 0 0011112222233444 89999999999999
No 43
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=38.55 E-value=38 Score=36.16 Aligned_cols=33 Identities=18% Similarity=0.522 Sum_probs=30.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEE
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMV 95 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~l 95 (501)
.|+|+.+|+++||+.. +|.=+.+|.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 7899999999999999 88888999999999973
No 44
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=38.25 E-value=2.6e+02 Score=28.62 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=43.8
Q ss_pred hHHHHHHHh--CCCEEE--E--ecCCcc-hhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEee-ccccCCCCCCCchH
Q 010789 80 SKYLNALAN--SGIQVM--V--GIPNEM-LSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVG-NEPFLPTFNGTFIG 151 (501)
Q Consensus 80 ~~vL~A~a~--tgi~V~--l--Gv~n~~-~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VG-NEvl~~~~~~~~~~ 151 (501)
...+.+++. .++||+ + |=|... ...+++++..-.+++++ +..+... -.+.+|-+= =|........+...
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~--~~~DGidiD~we~p~~~~~~~d~~ 130 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKK--NHFDGIVLEVWSQLAAYGVPDKRK 130 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHH--cCCCcEEEechhhhcccCCHHHHH
Confidence 344556654 578988 4 445432 34455665554555443 3333322 123344332 11111000011235
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 010789 152 TTLPALQNIQAALIKAGL 169 (501)
Q Consensus 152 ~Ll~am~nv~~aL~~~gl 169 (501)
.++..|+.+|++|.+.|+
T Consensus 131 ~~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 131 ELIQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 678889999999988775
No 45
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=37.82 E-value=79 Score=27.70 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEEE
Q 010789 60 TVVRMLKDNGIDRVKLFD--AD---SKYLNALANSGIQVMV 95 (501)
Q Consensus 60 ~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~tgi~V~l 95 (501)
++.+.++++|++.|+++- .. ..+|++|+..|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345667789999999983 33 5799999999998653
No 46
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=35.93 E-value=80 Score=35.22 Aligned_cols=73 Identities=21% Similarity=0.457 Sum_probs=48.5
Q ss_pred cCCCCccEEEcccccCCCCCCC----------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecccc-ccccCCC
Q 010789 273 NGFGNLSIIVGEIGWPTDGDKN----------ANLKFAQRFNQGFMSRVNAGKGTPMRSGAIDAYLFSLIDE-DAKSIQP 341 (501)
Q Consensus 273 ~g~~~~~VvVsETGWPS~G~~~----------AS~~Na~~y~~~li~~~~s~~Gtp~rp~~i~~y~F~~FDE-~wK~~~~ 341 (501)
..|+|.+|.|+|-|-+...+.. .-++..+.|++.+.+.+.. .|+- -.-+|..++-|- .|..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn----v~GYf~WSLmDnfEw~~--- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN----VKGYFVWSLLDNFEWLD--- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc----eeeEEEeEcccchhhhc---
Confidence 4588999999999998865432 3344556666666665542 2442 235888888873 3653
Q ss_pred CCcceeeEeeecC
Q 010789 342 GNFERHWGLLYFD 354 (501)
Q Consensus 342 g~~E~~wGlf~~d 354 (501)
+..-.||||+.|
T Consensus 475 -Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 -GYKVRFGLYYVD 486 (524)
T ss_pred -CcccccccEEEe
Confidence 367889999864
No 47
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.72 E-value=48 Score=34.99 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCEEEEecCC-hHHHHHHHhCCCEEE
Q 010789 61 VVRMLKDNGIDRVKLFDAD-SKYLNALANSGIQVM 94 (501)
Q Consensus 61 vv~llk~~~i~~VRiY~~d-~~vL~A~a~tgi~V~ 94 (501)
..++|+.+|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3789999999999999999 888889999999986
No 48
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=35.22 E-value=1.6e+02 Score=25.41 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhhc-cccceeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Q 010789 23 LLFYFYGGVLLIMDCV-VVVSGIGVNWGTQATHPLPPSTVVRMLKDNGIDRVKL 75 (501)
Q Consensus 23 ~~~~~~~g~~~~~~~~-~~~~~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRi 75 (501)
+++...+|.+.++.-+ .-...+-|.-...+.+.++.+++.+.|++.||..-++
T Consensus 12 il~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 12 ILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred HHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 3344445655555543 3356677777766667888889999999998865444
No 49
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.16 E-value=53 Score=35.31 Aligned_cols=37 Identities=32% Similarity=0.620 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIP 98 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~ 98 (501)
.|+|+.+|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888999999999984444
No 50
>PRK08815 GTP cyclohydrolase; Provisional
Probab=34.71 E-value=54 Score=35.10 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=32.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIP 98 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~ 98 (501)
.|+|+.+|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999974343
No 51
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=34.51 E-value=6.5e+02 Score=28.03 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=49.3
Q ss_pred hCCCEEEEecCCc--------ch---hhHH----hh-HHHHHHHHHhhccccccCCCeeeEEEEeeccccCC-----CCC
Q 010789 88 NSGIQVMVGIPNE--------ML---STLA----SS-VQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLP-----TFN 146 (501)
Q Consensus 88 ~tgi~V~lGv~n~--------~~---~~~a----~~-~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~-----~~~ 146 (501)
+.+|+|+...|-. .. ..+. .+ .++=.+.+.+-|..|- +.+..|.+|.+.||+... .+.
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~ 244 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWP 244 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCC
Confidence 4569999999852 11 1111 01 1222334455566664 346899999999999852 111
Q ss_pred CC-c-hHhHHHHHHH-HHHHHHHcCCCCceEEE
Q 010789 147 GT-F-IGTTLPALQN-IQAALIKAGLGTRIKVT 176 (501)
Q Consensus 147 ~~-~-~~~Ll~am~n-v~~aL~~~gl~~~IkVs 176 (501)
.. + +.+....|++ +.-+|++.++..++|+=
T Consensus 245 s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 245 SMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp --B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 11 1 5566777776 89999999985567763
No 52
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=34.01 E-value=3.1e+02 Score=25.77 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCEEEEecCCcch----hhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHH
Q 010789 81 KYLNALANSGIQVMVGIPNEML----STLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPA 156 (501)
Q Consensus 81 ~vL~A~a~tgi~V~lGv~n~~~----~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~a 156 (501)
.+|+++.+.||+|++|++.+.. .+.+.+...... +.+.+..-+.. ...+.+--+-.|+=... ....++
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~-h~sf~GWYip~E~~~~~------~~~~~~ 140 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGH-HPSFYGWYIPYEIDDYN------WNAPER 140 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcC-CCCCceEEEecccCCcc------cchHHH
Confidence 5788889999999999996521 111111111111 22223222222 24677878888875321 223566
Q ss_pred HHHHHHHHHHcC
Q 010789 157 LQNIQAALIKAG 168 (501)
Q Consensus 157 m~nv~~aL~~~g 168 (501)
.+.+.+.|++..
T Consensus 141 ~~~l~~~lk~~s 152 (166)
T PF14488_consen 141 FALLGKYLKQIS 152 (166)
T ss_pred HHHHHHHHHHhC
Confidence 666666666543
No 53
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.65 E-value=57 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 010789 61 VVRMLKDNGIDRVKLFDADSKYLNALANSGIQVM 94 (501)
Q Consensus 61 vv~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 94 (501)
..++|+.+|+++||+...+|.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3788999999999999999988889999999997
No 54
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.38 E-value=56 Score=35.81 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=32.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEec
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGI 97 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv 97 (501)
.++|+.+|+++||+...+|.=+.++.+.||+|.=-+
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 789999999999999999988899999999997333
No 55
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.06 E-value=59 Score=36.55 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=32.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIP 98 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~ 98 (501)
.++|+.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7889999999999999999999999999999874444
No 56
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.93 E-value=2.9e+02 Score=29.04 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=40.5
Q ss_pred cceeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCC
Q 010789 41 VSGIGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPN 99 (501)
Q Consensus 41 ~~~~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~n 99 (501)
...+|||.-...++ |..++.++.+.+.+.+.|=+..-+|...+.+++.||+|+.-|+.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 34688888554333 33455677776677777766555566679999999999988874
No 57
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=95 Score=27.94 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 010789 60 TVVRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIP 98 (501)
Q Consensus 60 ~vv~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~ 98 (501)
.+.++|+.+|++.|=+...-+..+++|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999988889999999999999999977
No 58
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=32.03 E-value=2.7e+02 Score=30.04 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCEEEEecCCcchhh----------------HHhh-HHHHHHHHHhhccccccCCCeeeEEEEeeccccCC
Q 010789 81 KYLNALANSGIQVMVGIPNEMLST----------------LASS-VQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLP 143 (501)
Q Consensus 81 ~vL~A~a~tgi~V~lGv~n~~~~~----------------~a~~-~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~ 143 (501)
..|+++++.|++.+++..|+..-- +..+ .++-...+.+ |..++...+.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 488999999999999888752111 1111 1222233443 333334446899999999999866
Q ss_pred CCC--CC----chHhHHHHHHHHHHHHHHcCCCCceEEEcccc
Q 010789 144 TFN--GT----FIGTTLPALQNIQAALIKAGLGTRIKVTVPLN 180 (501)
Q Consensus 144 ~~~--~~----~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~ 180 (501)
+.. .+ ...+....|+.++++|+++||..+| +.+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I--~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKI--SACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EE--EEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceE--Eecch
Confidence 411 11 2567788899999999999997654 44444
No 59
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=30.79 E-value=1.2e+02 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHHhCCCEEEE
Q 010789 59 STVVRMLKDNGIDRVKLF--D--------AD---SKYLNALANSGIQVMV 95 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRiY--~--------~d---~~vL~A~a~tgi~V~l 95 (501)
+++.+..+++|++.|+++ . +. ..+|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999999888 3 33 5799999999999753
No 60
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=30.24 E-value=1.6e+02 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHh--CCCEEEEecCC----cchhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHH
Q 010789 83 LNALAN--SGIQVMVGIPN----EMLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPA 156 (501)
Q Consensus 83 L~A~a~--tgi~V~lGv~n----~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~a 156 (501)
+.++++ .++||++.|.. +....+..+...-+++++ +|..+... -...+|-+==|.... .++....++..
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~--~~~DGidiDwE~~~~--~~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKK--YGFDGIDIDWEYPGA--RGDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHH--cCCCeEEECCcCCCC--CccHHHHHHHH
Confidence 455655 48999987765 123344444433333333 23333221 234555554444321 11123467888
Q ss_pred HHHHHHHHHHc
Q 010789 157 LQNIQAALIKA 167 (501)
Q Consensus 157 m~nv~~aL~~~ 167 (501)
|+.+|+.|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 61
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=98 Score=28.93 Aligned_cols=89 Identities=19% Similarity=0.351 Sum_probs=47.4
Q ss_pred EEe-cCC-----hHHHHHHHhCCCEEEEecCCcchh----------hHHhhHHHHHHHHHhhccccccCCCeeeEE--EE
Q 010789 74 KLF-DAD-----SKYLNALANSGIQVMVGIPNEMLS----------TLASSVQAAENWVAKNVSSHVSSNGVDIRY--VA 135 (501)
Q Consensus 74 RiY-~~d-----~~vL~A~a~tgi~V~lGv~n~~~~----------~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~--I~ 135 (501)
+|| |+| ..+.+++..+|++|++ |.|..+. -+.+..++|+.|+.....++ +.|.+ |-
T Consensus 3 ~I~VDADACPVk~~i~r~A~r~~~~v~~-Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-----DlVVT~Di~ 76 (150)
T COG1671 3 TIWVDADACPVKDEIYRVAERMGLKVTF-VANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-----DLVVTADIP 76 (150)
T ss_pred eEEEeCCCCchHHHHHHHHHHhCCeEEE-EeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-----CEEEECchH
Confidence 455 666 3566666778887766 2332211 12345678899987765543 33222 11
Q ss_pred e-------eccccCCC---CCCCchHhHHHHHHHHHHHHHHcCC
Q 010789 136 V-------GNEPFLPT---FNGTFIGTTLPALQNIQAALIKAGL 169 (501)
Q Consensus 136 V-------GNEvl~~~---~~~~~~~~Ll~am~nv~~aL~~~gl 169 (501)
. |--++... |+.+.... .-+|+++...|++.|.
T Consensus 77 LA~~ll~kg~~v~~prGr~y~~~nI~~-~L~~R~~~~~lR~~G~ 119 (150)
T COG1671 77 LASLLLDKGAAVLNPRGRLYTEENIGE-RLAMRDFMAKLRRQGK 119 (150)
T ss_pred HHHHHHhcCCEEECCCCcccCHhHHHH-HHHHHHHHHHHHHhcc
Confidence 1 22222210 22222333 3468999999998885
No 62
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.67 E-value=1.2e+02 Score=33.55 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------FD------AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
++-+++|+++|++..|+ +- .| ..++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 45678999988777764 31 23 3689999999999999998766654
No 63
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.52 E-value=1.4e+02 Score=27.03 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHHhCCCEEEEecCCc
Q 010789 57 PPSTVVRMLKDNGIDRVKLFDA---------------------D--SKYLNALANSGIQVMVGIPNE 100 (501)
Q Consensus 57 s~~~vv~llk~~~i~~VRiY~~---------------------d--~~vL~A~a~tgi~V~lGv~n~ 100 (501)
.|+++++.||..+++.|-+|.- | .++++|+.+.||+|++-+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678888898888888888643 1 367889999999998876543
No 64
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.32 E-value=6e+02 Score=27.72 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=88.5
Q ss_pred CCHHHHHHH---HHhCCCCEEEEecCC-----------hHHHHHHHh-CCC-EEEEecCCcchhhHHhhHHHHHHHHHhh
Q 010789 56 LPPSTVVRM---LKDNGIDRVKLFDAD-----------SKYLNALAN-SGI-QVMVGIPNEMLSTLASSVQAAENWVAKN 119 (501)
Q Consensus 56 ps~~~vv~l---lk~~~i~~VRiY~~d-----------~~vL~A~a~-tgi-~V~lGv~n~~~~~~a~~~~~A~~Wv~~~ 119 (501)
-++++|++. |...|++.|.+.+.| ...|+++.+ .++ .+-++..+.. .+..+.-. .+++
T Consensus 183 r~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~~ell~---~m~~- 256 (449)
T PRK14332 183 RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DFPDHLLS---LMAK- 256 (449)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cCCHHHHH---HHHh-
Confidence 457777654 445689999888654 245555543 232 2433333211 12111111 1111
Q ss_pred ccccccCCCeeeEEEEeecc-----ccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCc
Q 010789 120 VSSHVSSNGVDIRYVAVGNE-----PFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEG 194 (501)
Q Consensus 120 v~~y~p~~~~~I~~I~VGNE-----vl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g 194 (501)
. + .....|.+|=| +|-.-.++....+...+++.+|++. ..+.++|. ++- .|| |
T Consensus 257 ---~-~---~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~------p~i~i~td----~Iv-GfP----g 314 (449)
T PRK14332 257 ---N-P---RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIV------PDVGITTD----IIV-GFP----N 314 (449)
T ss_pred ---C-C---CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhC------CCCEEEEE----EEe-eCC----C
Confidence 1 1 12346677733 3321123334567777777777652 12445542 222 155 1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCceeecCCCcccCCCCCCCcccccccCCCCccc-CCCccchhhHHhhhhHHHHHHHHc
Q 010789 195 DFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISLYNDPSFPIDFAFFDSNSSPIN-DNGRVYENVFDANYDTLVWALQKN 273 (501)
Q Consensus 195 ~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~i~ld~Alf~~~~~~~~-d~~~~Y~nlfdaqvdav~~al~k~ 273 (501)
|-.+.+...++|+...+- =.+++|+|--....+ .+..+... +.. ....++..+.+-|-+-.....++.
T Consensus 315 ----ET~edf~~tl~~v~~l~~-~~~~~f~ys~~~GT~----a~~~~~~~--v~~~~~~~R~~~l~~~~~~~~~~~~~~~ 383 (449)
T PRK14332 315 ----ETEEEFEDTLAVVREVQF-DMAFMFKYSEREGTM----AKRKLPDN--VPEEVKSARLTKLVDLQTSISHEQNRAR 383 (449)
T ss_pred ----CCHHHHHHHHHHHHhCCC-CEEEEEEecCCCCCh----hHHhCcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223356677888876553 346777765433222 11112111 111 122345455444443333333333
Q ss_pred CCCCccEEEcccc
Q 010789 274 GFGNLSIIVGEIG 286 (501)
Q Consensus 274 g~~~~~VvVsETG 286 (501)
=....+|+|.|.+
T Consensus 384 vG~~~~vlve~~~ 396 (449)
T PRK14332 384 IGRVYSILIENTS 396 (449)
T ss_pred cCCEEEEEEEecc
Confidence 3356888886543
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.03 E-value=1.8e+02 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.411 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCEEEEe--cCC-------------hH---HHHHHHhCCC-----EEEEecCCcchhhHHhhHHHH
Q 010789 59 STVVRMLKDNGIDRVKLF--DAD-------------SK---YLNALANSGI-----QVMVGIPNEMLSTLASSVQAA 112 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRiY--~~d-------------~~---vL~A~a~tgi-----~V~lGv~n~~~~~~a~~~~~A 112 (501)
++.+++|+..|+++|-+= +.+ .. .++.+++.|+ .++.|++.+...++..+...+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 228 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKV 228 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 467888888888876542 112 12 3344455555 478899988777766655443
No 66
>CHL00041 rps11 ribosomal protein S11
Probab=27.37 E-value=1.5e+02 Score=26.35 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEE
Q 010789 60 TVVRMLKDNGIDRVKLFD--AD---SKYLNALANSGIQVM 94 (501)
Q Consensus 60 ~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~tgi~V~ 94 (501)
.+.+.++++|++.|+++= .. ..++++|+..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345567778999999983 32 579999999999875
No 67
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.36 E-value=1.1e+02 Score=26.77 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCEEEEe--cCC---hHHHHHHHhCCCEEEE
Q 010789 61 VVRMLKDNGIDRVKLF--DAD---SKYLNALANSGIQVMV 95 (501)
Q Consensus 61 vv~llk~~~i~~VRiY--~~d---~~vL~A~a~tgi~V~l 95 (501)
+.+.++++|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 52 ~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 52 IAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 4556777899999988 333 5799999999998654
No 68
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.79 E-value=8.3e+02 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=15.3
Q ss_pred CHHHHHHH---HHhCCCCEEEEecCC
Q 010789 57 PPSTVVRM---LKDNGIDRVKLFDAD 79 (501)
Q Consensus 57 s~~~vv~l---lk~~~i~~VRiY~~d 79 (501)
++++|++. |...|+..|.+.+.|
T Consensus 177 ~~e~Iv~Ei~~l~~~G~~ei~l~~~~ 202 (439)
T PRK14328 177 KPEDIIAEIKELVSEGYKEVTLLGQN 202 (439)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 56777654 334688888886543
No 69
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.55 E-value=1.3e+02 Score=33.08 Aligned_cols=46 Identities=9% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CC-------hHHHHHHHhCCCEEEEecCCcchhh
Q 010789 59 STVVRMLKDNGIDRVKL-------FD-----AD-------SKYLNALANSGIQVMVGIPNEMLST 104 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vL~A~a~tgi~V~lGv~n~~~~~ 104 (501)
++-++||+++|++.-|+ +- .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 45688999988777664 31 12 3689999999999999999766654
No 70
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.53 E-value=1.5e+02 Score=27.13 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHHhCCCEEEE
Q 010789 59 STVVRMLKDNGIDRVKLF--D--------AD---SKYLNALANSGIQVMV 95 (501)
Q Consensus 59 ~~vv~llk~~~i~~VRiY--~--------~d---~~vL~A~a~tgi~V~l 95 (501)
+++.+.++++|++.|+++ + +. ..+|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 345667778999999988 3 33 4799999999999753
No 71
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.46 E-value=1.7e+02 Score=30.74 Aligned_cols=76 Identities=25% Similarity=0.213 Sum_probs=50.4
Q ss_pred hHHHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHH
Q 010789 80 SKYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQN 159 (501)
Q Consensus 80 ~~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~n 159 (501)
..||+++..+|-.+.+|=.- .+ .-.++.|..|+...+..++ ++|.+|+.-|.-+. ..+|
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d--~W~ps~Aq~~men~lta~~----~~vdaVvA~nDgta-----------gGaI-- 233 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TD--GWLPSNAQQIMENLLTANY----NDIDAVVAPNDGTA-----------GGAI-- 233 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cc--ccCHHHHHHHHHHHHhccc----CceeEEEcCCCchh-----------HHHH--
Confidence 36899988887444466322 12 2356778888888787765 56888887776331 2233
Q ss_pred HHHHHHHcCCCCceEEEcc
Q 010789 160 IQAALIKAGLGTRIKVTVP 178 (501)
Q Consensus 160 v~~aL~~~gl~~~IkVsT~ 178 (501)
++|++.||.+++|||--
T Consensus 234 --~aL~a~Gl~g~vpVsGQ 250 (341)
T COG4213 234 --AALKAQGLAGKVPVSGQ 250 (341)
T ss_pred --HHHHhcccCCCCcccCc
Confidence 46778899989987743
No 72
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.93 E-value=5.9e+02 Score=24.36 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCCCEEEEecCC---------hHHHHHHHhCCCEEEE--ecCCcchhhHHhhHHHHHHHHHhhccccccC
Q 010789 58 PSTVVRMLKDNGIDRVKLFDAD---------SKYLNALANSGIQVMV--GIPNEMLSTLASSVQAAENWVAKNVSSHVSS 126 (501)
Q Consensus 58 ~~~vv~llk~~~i~~VRiY~~d---------~~vL~A~a~tgi~V~l--Gv~n~~~~~~a~~~~~A~~Wv~~~v~~y~p~ 126 (501)
-..+++.|.+.|.++|=+.... .....+++..|+++.+ ..+.....+.......+.+|++++
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 169 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------- 169 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------
Confidence 3455666777787777665432 1234556678877621 111111112222234555665432
Q ss_pred CCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCC--CCceEEEcccccccccccCCCCCCccccchhHHHH
Q 010789 127 NGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGL--GTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLM 204 (501)
Q Consensus 127 ~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl--~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~~l 204 (501)
..+++|++.|+.+. ...+ ++|++.|+ .++|.|.+-+.......-.. |...+...+....-
T Consensus 170 --~~~~ai~~~~d~~a-----------~g~~----~~l~~~g~~vp~di~vigfd~~~~~~~~~~-~~ltti~~~~~~~g 231 (265)
T cd01543 170 --PKPVGIFACTDARA-----------RQLL----EACRRAGIAVPEEVAVLGVDNDELICELSR-PPLSSVEQNAERIG 231 (265)
T ss_pred --CCCcEEEecChHHH-----------HHHH----HHHHHhCCCCCCceEEEeeCCchhhhccCC-CCCceeecCHHHHH
Confidence 13557777777652 2222 34455565 34566655444332211111 33444444443333
Q ss_pred HHHHHHH
Q 010789 205 LQILKFL 211 (501)
Q Consensus 205 ~~~ldfL 211 (501)
...++.|
T Consensus 232 ~~a~~~l 238 (265)
T cd01543 232 YEAAKLL 238 (265)
T ss_pred HHHHHHH
Confidence 4444444
No 73
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=25.66 E-value=5.6e+02 Score=27.52 Aligned_cols=165 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHh--CCCEEEEecC----------CcchhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEe--------------
Q 010789 83 LNALAN--SGIQVMVGIP----------NEMLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAV-------------- 136 (501)
Q Consensus 83 L~A~a~--tgi~V~lGv~----------n~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~V-------------- 136 (501)
+.++++ .++||++.|- ......+++++..-.+++++ +..++.. -.+.+|-+
T Consensus 65 ~~~lk~~~p~lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~s-iv~~l~~--~~fDGidiDWEyP~~~~~~~~g 141 (413)
T cd02873 65 ITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINS-AHSLLKT--YGFDGLDLAWQFPKNKPKKVRG 141 (413)
T ss_pred HHHHHhhCCCCeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHH-HHHHHHH--cCCCCeEeeeeCCCCccccccc
Q ss_pred --------------eccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCccccchhHH
Q 010789 137 --------------GNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHD 202 (501)
Q Consensus 137 --------------GNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~ 202 (501)
|+..+... ..+....++.-|+.+|++|++.++ .+-++.+........ |+ .+
T Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~-~~~d~~nf~~Ll~elr~~l~~~~~--~ls~av~~~~~~~~~-~d-----------~~ 206 (413)
T cd02873 142 TFGSAWHSFKKLFTGDSVVDEK-AAEHKEQFTALVRELKNALRPDGL--LLTLTVLPHVNSTWY-FD-----------VP 206 (413)
T ss_pred ccchhhhhhhcccccccccCCC-ChhHHHHHHHHHHHHHHHhcccCc--EEEEEecCCchhccc-cC-----------HH
Q ss_pred HHHHHHHHHhhcCCCceeecCCCcccCCCCC-CCcccccccCCCCcccCCCccchhhHHhhhhHHHHHHHHcCCCCccEE
Q 010789 203 LMLQILKFLSDNGGPFTVNIYPFISLYNDPS-FPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGFGNLSII 281 (501)
Q Consensus 203 ~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~-i~ld~Alf~~~~~~~~d~~~~Y~nlfdaqvdav~~al~k~g~~~~~Vv 281 (501)
.|.+.+||+. |-.|=|+....++. ....-.++.......... ++.......+.|.|.-+|+
T Consensus 207 ~l~~~vD~in-------lMtYD~~g~~~~~~~~~~~apL~~~~~~~~~~~-----------v~~~v~~~~~~gvp~~Klv 268 (413)
T cd02873 207 AIANNVDFVN-------LATFDFLTPERNPEEADYTAPIYELYERNPHHN-----------VDYQVKYWLNQGTPASKLN 268 (413)
T ss_pred HHhhcCCEEE-------EEEecccCCCCCCCccCcCCccCCCcccccccc-----------HHHHHHHHHHcCCCHHHeE
Q ss_pred Ec
Q 010789 282 VG 283 (501)
Q Consensus 282 Vs 283 (501)
++
T Consensus 269 lG 270 (413)
T cd02873 269 LG 270 (413)
T ss_pred EE
No 74
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.64 E-value=6.4e+02 Score=24.65 Aligned_cols=89 Identities=20% Similarity=0.367 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHh--CCCEEEEecCCcchhhHHhhHHHHHHHHHhhccccccCCCee
Q 010789 56 LPPSTVVRMLKDNGIDRVKLFDAD---SKYLNALAN--SGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSHVSSNGVD 130 (501)
Q Consensus 56 ps~~~vv~llk~~~i~~VRiY~~d---~~vL~A~a~--tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~ 130 (501)
-+++|+.+.+ +.|.+.|++|-++ ++-++++++ .+++++. ...+. .+++.+|++ ..
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI~-----~~N~~~~l~-----------aG 176 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGVN-----LDNVKDWFA-----------AG 176 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCCC-----HHHHHHHHH-----------CC
Confidence 3678887776 4789999999655 577787775 3466553 12222 234445544 24
Q ss_pred eEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHH
Q 010789 131 IRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALI 165 (501)
Q Consensus 131 I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~ 165 (501)
+.++.||...+.....++ ++.+-...++++++++
T Consensus 177 a~~vavgs~l~~~~~~~~-~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 177 ADAVGIGGELNKLASQGD-FDLITEKAKKYMSSLR 210 (213)
T ss_pred CcEEEEchHHhCccccCC-HHHHHHHHHHHHHHHH
Confidence 457888988764311222 3456666666655554
No 75
>PRK07198 hypothetical protein; Validated
Probab=25.57 E-value=62 Score=34.88 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHHhCCCEEEEecC
Q 010789 62 VRMLKDNGIDRV-KLFDADSKYLNALANSGIQVMVGIP 98 (501)
Q Consensus 62 v~llk~~~i~~V-RiY~~d~~vL~A~a~tgi~V~lGv~ 98 (501)
.|+|+.+|+++| |+.+.++.=+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 678999999999 9999999888999999999985554
No 76
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=25.42 E-value=3.1e+02 Score=29.35 Aligned_cols=132 Identities=17% Similarity=0.290 Sum_probs=67.7
Q ss_pred hHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCccccchhHHHHHHHHHHHhhcCCCceeecCCCcccC
Q 010789 150 IGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLMLQILKFLSDNGGPFTVNIYPFISLY 229 (501)
Q Consensus 150 ~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~ 229 (501)
.+++...++++|+ ..||+.+-...+-+...+. .=.|.++.-+-++.+++.|.+.|--++++++|+....
T Consensus 42 ~~~v~~~i~~~~~--------~~iP~d~~~iD~~~~~~~~---~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 42 QDEVREVIDRYRS--------NGIPLDVIWIDDDYQDGYG---DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp HHHHHHHHHHHHH--------TT--EEEEEE-GGGSBTTB---TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred HHHHHHHHHHHHH--------cCCCccceecccccccccc---ccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 4556666666655 2477776554333433221 1112222223578889999999999999999987653
Q ss_pred CCCCCCcccccccCCCCcccCCCccchhhHHhhhhHHHHHHHHcCC----CCccEEEcccccCCCCC-CCCCHHHHHHHH
Q 010789 230 NDPSFPIDFAFFDSNSSPINDNGRVYENVFDANYDTLVWALQKNGF----GNLSIIVGEIGWPTDGD-KNANLKFAQRFN 304 (501)
Q Consensus 230 ~~~~i~ld~Alf~~~~~~~~d~~~~Y~nlfdaqvdav~~al~k~g~----~~~~VvVsETGWPS~G~-~~AS~~Na~~y~ 304 (501)
.. + | ..++ .+++.|+ ++-...+++. ||-.+. .+-+-.+++.++
T Consensus 111 ~~-----~-----------------~-~~~~--------~~~~~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~w~ 158 (441)
T PF01055_consen 111 SP-----D-----------------Y-ENYD--------EAKEKGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARDWW 158 (441)
T ss_dssp TT-----B-------------------HHHH--------HHHHTT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHHHH
T ss_pred CC-----c-----------------c-hhhh--------hHhhcCceeecccCCcccccc-cCCcccccCCCChhHHHHH
Confidence 21 1 1 1111 1112221 2224566666 883322 234555688888
Q ss_pred HHHHHHHHhCCCCCCCCCCccEEEEec
Q 010789 305 QGFMSRVNAGKGTPMRSGAIDAYLFSL 331 (501)
Q Consensus 305 ~~li~~~~s~~Gtp~rp~~i~~y~F~~ 331 (501)
.+.++.+.+.. +++.++..+
T Consensus 159 ~~~~~~~~~~~-------Gvdg~w~D~ 178 (441)
T PF01055_consen 159 KEQLKELLDDY-------GVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHTTS-------T-SEEEEES
T ss_pred HHHHHHHHhcc-------CCceEEeec
Confidence 77777766532 567877654
No 77
>PRK05309 30S ribosomal protein S11; Validated
Probab=24.66 E-value=1.8e+02 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEE
Q 010789 60 TVVRMLKDNGIDRVKLFD--AD---SKYLNALANSGIQVM 94 (501)
Q Consensus 60 ~vv~llk~~~i~~VRiY~--~d---~~vL~A~a~tgi~V~ 94 (501)
.+.+.++++|++.|+++- .. ..+|++|+..|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345567789999999993 33 579999999999865
No 78
>PLN03059 beta-galactosidase; Provisional
Probab=23.09 E-value=1.3e+03 Score=27.49 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=90.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhccccceeeEEecCC-------------CC-CC--CCHH---HHHHHHHhCCCCEEE
Q 010789 14 RRKLLVGLLLLFYFYGGVLLIMDCVVVVSGIGVNWGTQ-------------AT-HP--LPPS---TVVRMLKDNGIDRVK 74 (501)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GvnYg~~-------------~~-nl--ps~~---~vv~llk~~~i~~VR 74 (501)
|-.|.|.|+|.+.|+....+..+. ...|.|... |. +. .+|+ +.++.+|..|++.|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~ 77 (840)
T PLN03059 3 RGSLVVFLLLFLLFLLSSSWVSHG-----SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQ 77 (840)
T ss_pred ccceehhhHHHHHHHhhhhhhccc-----eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEE
Confidence 445566666666666655544443 225666632 11 11 2344 456677889999999
Q ss_pred EecC-----------C-------hHHHHHHHhCCCEEEEec---------------CCcchhh--H----HhhHHHHHHH
Q 010789 75 LFDA-----------D-------SKYLNALANSGIQVMVGI---------------PNEMLST--L----ASSVQAAENW 115 (501)
Q Consensus 75 iY~~-----------d-------~~vL~A~a~tgi~V~lGv---------------~n~~~~~--~----a~~~~~A~~W 115 (501)
+|-. | ..-|+.+++.|+.|+|=. |.-..+. + ..-.++.++|
T Consensus 78 tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~ 157 (840)
T PLN03059 78 TYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKF 157 (840)
T ss_pred EEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHH
Confidence 9932 1 346777889999998843 2111111 1 1112455677
Q ss_pred HHhhcc-----ccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccc
Q 010789 116 VAKNVS-----SHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLN 180 (501)
Q Consensus 116 v~~~v~-----~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~ 180 (501)
+..-+. ++.-..+..|..+=|=||.=. +..+....-..+|+.+++.++++|++ ||.-|.+.
T Consensus 158 ~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs--~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~dg 223 (840)
T PLN03059 158 TEKIVDMMKSEKLFEPQGGPIILSQIENEYGP--VEWEIGAPGKAYTKWAADMAVKLGTG--VPWVMCKQ 223 (840)
T ss_pred HHHHHHHHhhcceeecCCCcEEEEEecccccc--eecccCcchHHHHHHHHHHHHHcCCC--cceEECCC
Confidence 654322 221123457889999999632 21111112367899999999999974 66655543
No 79
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=22.96 E-value=5.3e+02 Score=24.10 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=26.1
Q ss_pred CCCEEEEecCC-------hHHHHHHHhCCCEEEEecCCcchhhHHhhHHHHHHHHHhh
Q 010789 69 GIDRVKLFDAD-------SKYLNALANSGIQVMVGIPNEMLSTLASSVQAAENWVAKN 119 (501)
Q Consensus 69 ~i~~VRiY~~d-------~~vL~A~a~tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~ 119 (501)
....|-.|.+. ...|..+++.|++| +||..++ +..++.+|++++
T Consensus 69 k~vvv~FwatwC~~C~~e~p~l~~l~~~~~~v-i~v~~~~------~~~~~~~~~~~~ 119 (185)
T PRK15412 69 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRV-VGMNYKD------DRQKAISWLKEL 119 (185)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHcCCEE-EEEECCC------CHHHHHHHHHHc
Confidence 35566677655 12456677778875 6786443 234555677664
No 80
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.16 E-value=5.2e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=26.4
Q ss_pred eeeEEecCCCCCCCC----HHHHHHHHHh-CCCCEEEEecCCh-----HHHHHHHhC
Q 010789 43 GIGVNWGTQATHPLP----PSTVVRMLKD-NGIDRVKLFDADS-----KYLNALANS 89 (501)
Q Consensus 43 ~~GvnYg~~~~nlps----~~~vv~llk~-~~i~~VRiY~~d~-----~vL~A~a~t 89 (501)
.+|.|=+.||.+++. -.+.++.|.+ .|+.+||+=..+| +++.+++++
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~ 251 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAET 251 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcC
Confidence 457777777766642 2333333322 4567777765553 566666653
No 81
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.05 E-value=1e+03 Score=25.64 Aligned_cols=78 Identities=4% Similarity=0.001 Sum_probs=39.9
Q ss_pred eEEEEeeccccCC----C-CCCCchHhHHHHHHHHHHHHHHcCCCCceEEEcccccccccccCCCCCCccccchhHHHHH
Q 010789 131 IRYVAVGNEPFLP----T-FNGTFIGTTLPALQNIQAALIKAGLGTRIKVTVPLNADVYQSQSNLPSEGDFRTDIHDLML 205 (501)
Q Consensus 131 I~~I~VGNEvl~~----~-~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~PS~g~F~~~~~~~l~ 205 (501)
...+.+|=|-... . .++........+++.+|+.+ ..+.|++..-. .|| | |-.+.+.
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----GfP----g----ET~edf~ 310 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDIIV-----GFP----T----ETEEDFM 310 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC----C----CCHHHHH
Confidence 3456666655422 1 12223455666666666541 12556654321 254 1 2234567
Q ss_pred HHHHHHhhcCCCceeecCCCccc
Q 010789 206 QILKFLSDNGGPFTVNIYPFISL 228 (501)
Q Consensus 206 ~~ldfL~~~~sp~~vNiyPyf~~ 228 (501)
..++|+.+.+- -.+++++|-..
T Consensus 311 ~tl~fi~~~~~-~~~~~~~~sp~ 332 (434)
T PRK14330 311 ETVDLVEKAQF-ERLNLAIYSPR 332 (434)
T ss_pred HHHHHHHhcCC-CEEeeeeccCC
Confidence 78899887653 34566665543
No 82
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.65 E-value=2.1e+02 Score=28.15 Aligned_cols=61 Identities=26% Similarity=0.467 Sum_probs=38.0
Q ss_pred CEEEEecCC-----hHHHHHHHh--CCCEEEEecCCcchhhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeecccc
Q 010789 71 DRVKLFDAD-----SKYLNALAN--SGIQVMVGIPNEMLSTLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPF 141 (501)
Q Consensus 71 ~~VRiY~~d-----~~vL~A~a~--tgi~V~lGv~n~~~~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 141 (501)
-+.+|||+- ..+..+... .|+=++..|-|+ .++ .....|++ +|..+.+ ..+.-|.|||-.=
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne--~Sf----eni~~W~~-~I~e~a~---~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE--KSF----ENIRNWIK-NIDEHAS---DDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch--HHH----HHHHHHHH-HHHhhCC---CCCcEEEeecccc
Confidence 466788875 356666654 344444444443 233 44556876 4777765 4778899999864
No 83
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=21.42 E-value=2.4e+02 Score=27.86 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCEEEEecCCcch---hhHHhhHHHHHHHHHhhccccccCCCeeeEEEEeeccccCCCCCCCchHhHHHHH
Q 010789 81 KYLNALANSGIQVMVGIPNEML---STLASSVQAAENWVAKNVSSHVSSNGVDIRYVAVGNEPFLPTFNGTFIGTTLPAL 157 (501)
Q Consensus 81 ~vL~A~a~tgi~V~lGv~n~~~---~~~a~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Ll~am 157 (501)
..+++++..|+||++.|..... ..+.+++...++++++ +..+... -.+.+|-+==|-... . .......+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~--~~~DGIdiDwE~~~~----~-~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVS--YNLDGIDVDLEGPDV----T-FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHH--hCCCceeEEeeccCc----c-HhHHHHHH
Confidence 4566777789999988765422 2233444444444443 3333221 123444444454321 1 24567789
Q ss_pred HHHHHHHHHcCC
Q 010789 158 QNIQAALIKAGL 169 (501)
Q Consensus 158 ~nv~~aL~~~gl 169 (501)
+++|++|++.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987664
No 84
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=21.42 E-value=1.7e+02 Score=28.58 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=34.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCCc
Q 010789 62 VRMLKDNGIDRVKLFDADSKYLNALANSGIQVMVGIPNE 100 (501)
Q Consensus 62 v~llk~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGv~n~ 100 (501)
.++|+..||++||+-..+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 678999999999999999988899999999998887764
No 85
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.24 E-value=1.9e+02 Score=25.98 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhCCCEEEEecCC
Q 010789 56 LPPSTVVRMLKDNGIDRVKLFDAD-----SKYLNALANSGIQVMVGIPN 99 (501)
Q Consensus 56 ps~~~vv~llk~~~i~~VRiY~~d-----~~vL~A~a~tgi~V~lGv~n 99 (501)
.+++++++..++.|++.|=+=|-+ +...+.++..||+|++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 488999999999999988886654 35566667799999999965
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.11 E-value=2.5e+02 Score=27.39 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=38.4
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC---C-hHHHHHHHhCCCEEEE
Q 010789 44 IGVNWGTQATHPLPPSTVVRMLKDNGIDRVKLFDA---D-SKYLNALANSGIQVMV 95 (501)
Q Consensus 44 ~GvnYg~~~~nlps~~~vv~llk~~~i~~VRiY~~---d-~~vL~A~a~tgi~V~l 95 (501)
+.||++..-.++ +.++.++.+++.|++.|-++.. + ..+.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567777555444 6788999999999999999742 2 3567777899999763
Done!