Query 010790
Match_columns 501
No_of_seqs 439 out of 2710
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.8E-36 8.2E-41 338.7 23.0 281 19-320 467-755 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 2.7E-35 5.9E-40 333.6 19.8 281 23-321 253-591 (857)
3 PLN03081 pentatricopeptide (PP 100.0 6.7E-35 1.4E-39 323.2 18.9 281 24-321 124-428 (697)
4 PLN03218 maturation of RBCL 1; 100.0 6.6E-34 1.4E-38 320.7 24.9 280 21-321 435-721 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 1E-34 2.2E-39 328.8 15.2 280 23-320 152-490 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.9E-31 8.4E-36 293.2 26.5 259 24-311 260-521 (697)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.9 1.4E-26 2.9E-31 207.4 7.3 135 318-460 4-147 (155)
8 PF13041 PPR_2: PPR repeat fam 99.4 5.4E-13 1.2E-17 95.6 6.5 49 135-183 1-49 (50)
9 PF13041 PPR_2: PPR repeat fam 99.4 1.1E-12 2.5E-17 93.9 6.0 50 99-149 1-50 (50)
10 PRK11788 tetratricopeptide rep 99.3 1.4E-09 3E-14 112.3 26.5 183 24-217 70-259 (389)
11 KOG4422 Uncharacterized conser 99.3 4E-10 8.7E-15 111.5 20.5 184 23-219 207-445 (625)
12 PRK11788 tetratricopeptide rep 99.3 1.3E-09 2.8E-14 112.5 24.4 178 24-217 142-325 (389)
13 KOG4422 Uncharacterized conser 99.1 7.7E-09 1.7E-13 102.6 18.8 180 25-217 118-322 (625)
14 TIGR02917 PEP_TPR_lipo putativ 98.8 1.5E-06 3.2E-11 98.5 27.7 179 24-217 568-746 (899)
15 TIGR02917 PEP_TPR_lipo putativ 98.8 1.8E-06 3.9E-11 97.8 28.4 266 23-316 533-802 (899)
16 PF12854 PPR_1: PPR repeat 98.8 3.9E-09 8.5E-14 68.7 3.8 32 132-163 2-33 (34)
17 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.4E-13 66.6 4.3 33 95-127 1-33 (34)
18 KOG4318 Bicoid mRNA stability 98.6 5.5E-07 1.2E-11 96.7 12.3 186 18-217 19-282 (1088)
19 TIGR02521 type_IV_pilW type IV 98.5 7.3E-05 1.6E-09 70.0 25.6 166 24-201 32-198 (234)
20 KOG3777 Uncharacterized conser 98.4 1.4E-07 3.1E-12 95.7 2.7 105 316-427 12-124 (443)
21 TIGR02521 type_IV_pilW type IV 98.3 0.00022 4.7E-09 66.7 22.8 165 24-200 66-231 (234)
22 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 56.4 4.7 33 139-171 2-34 (35)
23 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6E-11 55.1 4.5 34 25-58 2-35 (35)
24 PRK15174 Vi polysaccharide exp 98.2 0.0015 3.3E-08 72.3 28.6 162 25-200 112-278 (656)
25 PRK15174 Vi polysaccharide exp 98.2 0.0008 1.7E-08 74.6 26.1 162 26-201 79-241 (656)
26 PF13429 TPR_15: Tetratricopep 98.1 4.6E-05 9.9E-10 75.2 14.2 177 24-217 79-258 (280)
27 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 54.3 4.4 32 139-170 3-34 (34)
28 KOG4318 Bicoid mRNA stability 98.1 1.7E-05 3.6E-10 85.6 11.0 45 169-213 201-245 (1088)
29 PF13812 PPR_3: Pentatricopept 98.1 6.3E-06 1.4E-10 53.2 4.5 33 24-56 2-34 (34)
30 PF13429 TPR_15: Tetratricopep 98.1 4.8E-05 1E-09 75.0 12.6 164 25-202 46-210 (280)
31 TIGR00990 3a0801s09 mitochondr 98.0 0.0019 4.1E-08 71.2 26.1 161 25-200 333-495 (615)
32 PF01535 PPR: PPR repeat; Int 98.0 8.5E-06 1.8E-10 51.4 3.6 29 139-167 2-30 (31)
33 PF08579 RPM2: Mitochondrial r 98.0 9.5E-05 2.1E-09 61.1 10.6 87 27-113 29-116 (120)
34 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.1E-09 74.0 13.9 132 45-185 50-186 (429)
35 TIGR00990 3a0801s09 mitochondr 97.9 0.002 4.4E-08 70.9 22.7 166 24-201 366-537 (615)
36 PRK12370 invasion protein regu 97.8 0.0031 6.6E-08 68.6 22.1 160 35-210 316-477 (553)
37 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.6E-10 49.1 3.6 30 25-54 2-31 (31)
38 PRK09782 bacteriophage N4 rece 97.8 0.0033 7.2E-08 72.2 22.6 151 34-199 520-670 (987)
39 PRK12370 invasion protein regu 97.8 0.0034 7.3E-08 68.2 21.5 160 25-200 340-501 (553)
40 PRK10049 pgaA outer membrane p 97.7 0.0066 1.4E-07 68.6 24.3 175 29-217 278-470 (765)
41 PRK09782 bacteriophage N4 rece 97.7 0.0076 1.7E-07 69.3 24.2 166 25-210 479-645 (987)
42 PF10037 MRP-S27: Mitochondria 97.7 0.00074 1.6E-08 69.7 13.5 132 88-220 50-186 (429)
43 TIGR03302 OM_YfiO outer membra 97.6 0.014 2.9E-07 55.8 21.3 168 22-201 32-232 (235)
44 PRK10747 putative protoheme IX 97.5 0.016 3.4E-07 60.3 21.9 179 24-220 188-374 (398)
45 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.4E-08 54.0 11.1 79 105-184 29-116 (120)
46 PRK10747 putative protoheme IX 97.5 0.018 3.8E-07 59.9 21.4 35 171-207 262-296 (398)
47 KOG1129 TPR repeat-containing 97.5 0.0046 1E-07 60.4 15.2 167 27-207 227-393 (478)
48 PRK14574 hmsH outer membrane p 97.4 0.025 5.5E-07 63.8 22.4 170 29-212 298-488 (822)
49 PRK11447 cellulose synthase su 97.4 0.017 3.8E-07 68.3 22.3 160 28-204 578-744 (1157)
50 COG2956 Predicted N-acetylgluc 97.4 0.015 3.2E-07 56.9 17.6 168 29-208 113-285 (389)
51 TIGR00540 hemY_coli hemY prote 97.4 0.02 4.3E-07 59.8 20.0 183 24-220 188-383 (409)
52 PF06239 ECSIT: Evolutionarily 97.4 0.0016 3.5E-08 60.4 10.2 103 97-219 43-150 (228)
53 PRK14574 hmsH outer membrane p 97.3 0.023 5E-07 64.1 21.3 164 22-201 34-198 (822)
54 PRK10049 pgaA outer membrane p 97.3 0.039 8.5E-07 62.4 23.0 161 25-199 17-177 (765)
55 KOG2003 TPR repeat-containing 97.2 0.028 6.2E-07 57.1 18.2 118 100-222 591-709 (840)
56 PRK11447 cellulose synthase su 97.2 0.056 1.2E-06 64.1 23.7 162 26-200 464-665 (1157)
57 TIGR00540 hemY_coli hemY prote 97.2 0.047 1E-06 57.0 20.4 50 81-132 168-217 (409)
58 PF06239 ECSIT: Evolutionarily 97.1 0.0065 1.4E-07 56.4 11.6 109 56-187 45-153 (228)
59 PF05843 Suf: Suppressor of fo 97.1 0.0066 1.4E-07 59.9 12.5 127 25-164 3-134 (280)
60 cd05804 StaR_like StaR_like; a 97.1 0.057 1.2E-06 54.8 19.9 161 29-200 49-214 (355)
61 PRK11189 lipoprotein NlpI; Pro 97.1 0.25 5.4E-06 49.1 23.8 162 25-201 66-265 (296)
62 PF04733 Coatomer_E: Coatomer 97.1 0.0045 9.8E-08 61.3 11.1 153 28-199 70-228 (290)
63 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.026 5.7E-07 58.1 16.5 124 60-199 171-295 (395)
64 KOG1070 rRNA processing protei 97.0 0.027 5.9E-07 64.4 17.5 178 25-207 1460-1669(1710)
65 COG3063 PilF Tfp pilus assembl 97.0 0.2 4.4E-06 47.0 20.0 173 25-210 37-210 (250)
66 PF04733 Coatomer_E: Coatomer 97.0 0.015 3.2E-07 57.6 13.6 82 109-200 110-195 (290)
67 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.023 5E-07 58.5 14.3 126 25-166 171-297 (395)
68 COG3071 HemY Uncharacterized e 96.8 0.18 3.9E-06 50.8 19.5 181 22-220 186-374 (400)
69 KOG4626 O-linked N-acetylgluco 96.8 0.033 7.2E-07 58.9 14.8 115 78-199 298-415 (966)
70 KOG1126 DNA-binding cell divis 96.8 0.041 8.8E-07 58.6 15.6 170 23-212 421-595 (638)
71 KOG1840 Kinesin light chain [C 96.8 0.081 1.8E-06 56.2 18.0 167 25-199 285-477 (508)
72 KOG1840 Kinesin light chain [C 96.8 0.088 1.9E-06 55.9 18.2 172 19-200 193-395 (508)
73 PRK11189 lipoprotein NlpI; Pro 96.8 0.66 1.4E-05 46.1 24.2 149 37-199 40-192 (296)
74 COG2956 Predicted N-acetylgluc 96.8 0.17 3.6E-06 49.8 18.2 235 24-274 142-378 (389)
75 PF09976 TPR_21: Tetratricopep 96.8 0.099 2.2E-06 45.9 15.9 125 25-162 14-143 (145)
76 PF12921 ATP13: Mitochondrial 96.8 0.019 4E-07 49.4 10.7 98 100-218 1-99 (126)
77 PF05843 Suf: Suppressor of fo 96.7 0.068 1.5E-06 52.7 15.6 145 59-217 2-150 (280)
78 KOG3081 Vesicle coat complex C 96.5 0.13 2.9E-06 49.2 15.5 85 112-201 148-236 (299)
79 PF09976 TPR_21: Tetratricopep 96.5 0.13 2.9E-06 45.1 14.6 126 60-197 14-143 (145)
80 PRK15359 type III secretion sy 96.4 0.13 2.7E-06 45.3 14.2 103 103-210 26-128 (144)
81 cd00189 TPR Tetratricopeptide 96.4 0.066 1.4E-06 41.1 11.2 94 104-200 3-96 (100)
82 KOG4626 O-linked N-acetylgluco 96.3 0.37 8E-06 51.3 18.6 160 24-200 321-484 (966)
83 COG4783 Putative Zn-dependent 96.2 0.29 6.2E-06 50.7 17.0 149 20-201 304-454 (484)
84 KOG2076 RNA polymerase III tra 96.2 0.34 7.4E-06 53.5 18.5 178 25-208 142-352 (895)
85 PRK10370 formate-dependent nit 96.2 0.4 8.7E-06 44.7 16.9 127 81-213 54-184 (198)
86 PRK15359 type III secretion sy 96.2 0.11 2.3E-06 45.8 12.3 82 81-165 39-120 (144)
87 TIGR02552 LcrH_SycD type III s 96.1 0.21 4.5E-06 42.9 13.9 106 100-210 16-121 (135)
88 cd05804 StaR_like StaR_like; a 96.1 0.81 1.7E-05 46.3 20.3 165 27-202 118-294 (355)
89 COG3071 HemY Uncharacterized e 96.1 1.9 4E-05 43.7 21.7 166 30-206 125-297 (400)
90 KOG3081 Vesicle coat complex C 96.1 0.45 9.8E-06 45.7 16.5 116 79-200 150-270 (299)
91 PF12921 ATP13: Mitochondrial 96.1 0.083 1.8E-06 45.4 10.7 56 130-185 45-101 (126)
92 KOG2003 TPR repeat-containing 96.1 0.69 1.5E-05 47.4 18.4 128 57-198 591-719 (840)
93 KOG1129 TPR repeat-containing 96.0 0.24 5.3E-06 48.7 14.3 169 20-201 253-424 (478)
94 TIGR02552 LcrH_SycD type III s 96.0 0.32 7E-06 41.6 14.2 82 81-165 32-113 (135)
95 KOG1070 rRNA processing protei 95.9 0.33 7.2E-06 56.0 17.0 142 46-201 1447-1593(1710)
96 PRK10370 formate-dependent nit 95.8 0.59 1.3E-05 43.5 15.9 131 37-181 53-186 (198)
97 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.29 6.3E-06 40.5 12.6 96 103-201 4-105 (119)
98 cd00189 TPR Tetratricopeptide 95.6 0.26 5.5E-06 37.7 11.4 91 27-127 4-94 (100)
99 PF12569 NARP1: NMDA receptor- 95.6 1.2 2.6E-05 47.8 19.5 111 103-217 196-307 (517)
100 KOG1914 mRNA cleavage and poly 95.6 0.36 7.7E-06 50.6 14.6 149 39-200 347-500 (656)
101 PRK15179 Vi polysaccharide bio 95.4 2.2 4.8E-05 47.5 21.3 114 81-200 101-216 (694)
102 COG5107 RNA14 Pre-mRNA 3'-end 95.4 0.42 9.2E-06 49.0 14.0 144 59-217 398-545 (660)
103 smart00299 CLH Clathrin heavy 95.3 1.2 2.7E-05 38.6 15.7 128 25-184 9-137 (140)
104 KOG1155 Anaphase-promoting com 95.3 1.8 4E-05 44.7 18.2 187 27-218 265-477 (559)
105 KOG2002 TPR-containing nuclear 95.3 0.67 1.4E-05 51.8 16.2 183 32-217 573-761 (1018)
106 KOG1914 mRNA cleavage and poly 95.3 1 2.3E-05 47.3 16.6 168 39-216 309-481 (656)
107 PF12569 NARP1: NMDA receptor- 95.3 1.9 4.1E-05 46.3 19.5 162 25-198 145-331 (517)
108 TIGR03302 OM_YfiO outer membra 95.1 1.7 3.6E-05 41.2 17.2 141 25-166 72-232 (235)
109 COG5010 TadD Flp pilus assembl 95.1 1.4 3E-05 42.2 15.7 155 30-197 73-227 (257)
110 TIGR02795 tol_pal_ybgF tol-pal 95.0 0.88 1.9E-05 37.5 13.2 95 25-127 4-102 (119)
111 KOG2002 TPR-containing nuclear 94.9 0.6 1.3E-05 52.1 14.6 171 37-217 626-815 (1018)
112 PF03704 BTAD: Bacterial trans 94.9 0.24 5.3E-06 43.3 10.0 74 139-213 64-142 (146)
113 KOG1915 Cell cycle control pro 94.9 2 4.2E-05 44.6 17.0 157 29-201 113-273 (677)
114 PF14559 TPR_19: Tetratricopep 94.8 0.12 2.7E-06 38.5 6.7 22 106-127 30-51 (68)
115 PF12895 Apc3: Anaphase-promot 94.6 0.095 2.1E-06 41.2 5.9 20 143-162 31-50 (84)
116 PRK15179 Vi polysaccharide bio 94.6 3.6 7.7E-05 45.9 20.0 142 24-180 87-230 (694)
117 KOG4340 Uncharacterized conser 94.6 0.81 1.8E-05 44.6 12.9 155 32-198 153-336 (459)
118 KOG1126 DNA-binding cell divis 94.5 1.5 3.2E-05 47.1 15.8 163 25-201 457-620 (638)
119 COG5010 TadD Flp pilus assembl 94.4 1.6 3.5E-05 41.8 14.5 106 99-207 98-203 (257)
120 KOG1128 Uncharacterized conser 94.4 0.86 1.9E-05 49.5 14.0 169 25-200 426-615 (777)
121 PRK02603 photosystem I assembl 94.4 1.8 3.9E-05 39.0 14.5 115 100-220 34-164 (172)
122 KOG3941 Intermediate in Toll s 94.4 0.24 5.2E-06 47.8 8.8 101 99-219 65-170 (406)
123 KOG1155 Anaphase-promoting com 94.3 4.2 9.1E-05 42.2 17.9 161 26-200 333-494 (559)
124 PF13170 DUF4003: Protein of u 94.2 2.4 5.2E-05 42.2 16.0 134 40-178 79-223 (297)
125 KOG3785 Uncharacterized conser 94.2 0.59 1.3E-05 46.6 11.3 170 21-199 284-455 (557)
126 PF14559 TPR_19: Tetratricopep 94.2 0.23 5E-06 37.0 7.0 61 113-178 3-64 (68)
127 KOG2076 RNA polymerase III tra 94.2 2.4 5.2E-05 47.1 17.0 169 21-199 314-510 (895)
128 KOG3941 Intermediate in Toll s 94.2 0.5 1.1E-05 45.7 10.5 100 79-198 85-185 (406)
129 KOG0547 Translocase of outer m 94.1 3.6 7.7E-05 43.0 17.1 115 81-201 443-566 (606)
130 PF12895 Apc3: Anaphase-promot 94.0 0.13 2.8E-06 40.5 5.4 79 80-162 3-83 (84)
131 PF03704 BTAD: Bacterial trans 93.9 0.43 9.4E-06 41.7 9.2 70 103-174 64-138 (146)
132 PRK02603 photosystem I assembl 93.9 3.8 8.2E-05 36.9 15.6 82 60-152 37-121 (172)
133 CHL00033 ycf3 photosystem I as 93.8 1.7 3.8E-05 38.9 13.3 93 25-126 37-138 (168)
134 PF05991 NYN_YacP: YacP-like N 93.8 0.068 1.5E-06 48.3 3.8 114 319-440 1-130 (166)
135 PLN03088 SGT1, suppressor of 93.6 1.6 3.5E-05 44.6 14.0 83 79-165 15-98 (356)
136 PF13170 DUF4003: Protein of u 93.1 1.3 2.9E-05 43.9 12.1 131 81-213 77-223 (297)
137 PLN03088 SGT1, suppressor of 93.1 1.6 3.5E-05 44.6 13.0 105 108-217 9-113 (356)
138 PF13929 mRNA_stabil: mRNA sta 93.1 9.2 0.0002 37.5 17.2 139 81-219 143-290 (292)
139 PRK10153 DNA-binding transcrip 93.1 8.1 0.00018 41.6 18.8 151 52-212 331-491 (517)
140 KOG1915 Cell cycle control pro 93.0 5.8 0.00013 41.3 16.4 159 34-201 377-536 (677)
141 PF12688 TPR_5: Tetratrico pep 93.0 4.3 9.4E-05 34.5 13.4 104 32-149 10-118 (120)
142 PRK10153 DNA-binding transcrip 92.8 7 0.00015 42.1 17.9 147 21-175 335-489 (517)
143 COG5107 RNA14 Pre-mRNA 3'-end 92.8 3 6.5E-05 43.1 13.9 144 25-184 399-547 (660)
144 PRK10803 tol-pal system protei 92.7 3.7 8E-05 40.1 14.3 105 101-210 143-253 (263)
145 PF04840 Vps16_C: Vps16, C-ter 92.5 4.9 0.00011 40.4 15.2 95 81-196 192-286 (319)
146 CHL00033 ycf3 photosystem I as 92.4 3.7 8.1E-05 36.7 13.2 96 100-197 34-138 (168)
147 PF13432 TPR_16: Tetratricopep 92.1 0.85 1.8E-05 33.6 7.2 53 146-199 6-58 (65)
148 KOG3616 Selective LIM binding 92.0 1 2.2E-05 48.9 9.8 106 33-160 742-847 (1636)
149 KOG0495 HAT repeat protein [RN 91.8 22 0.00049 38.7 19.3 164 24-201 517-680 (913)
150 PRK10866 outer membrane biogen 91.7 13 0.00028 35.8 20.9 168 20-200 30-240 (243)
151 KOG3060 Uncharacterized conser 91.5 14 0.0003 35.6 17.8 158 36-208 25-188 (289)
152 COG4783 Putative Zn-dependent 91.5 20 0.00044 37.5 19.9 128 59-200 308-436 (484)
153 PRK15363 pathogenicity island 91.4 7.8 0.00017 34.5 13.4 89 107-199 41-130 (157)
154 PF04053 Coatomer_WDAD: Coatom 91.0 4 8.7E-05 43.0 13.2 135 21-197 293-427 (443)
155 PRK04841 transcriptional regul 90.9 10 0.00022 43.8 17.8 162 31-200 460-640 (903)
156 KOG2047 mRNA splicing factor [ 90.9 13 0.00029 40.2 16.5 164 31-207 110-283 (835)
157 KOG0547 Translocase of outer m 90.8 24 0.00052 37.1 18.6 152 34-200 337-490 (606)
158 PF14938 SNAP: Soluble NSF att 90.7 18 0.00039 35.5 17.4 183 25-219 37-247 (282)
159 KOG1128 Uncharacterized conser 90.7 1.3 2.8E-05 48.2 9.2 166 103-314 400-583 (777)
160 KOG0495 HAT repeat protein [RN 90.1 32 0.0007 37.5 20.0 159 25-199 586-746 (913)
161 PF13371 TPR_9: Tetratricopept 90.1 2.5 5.3E-05 31.8 8.2 63 145-210 3-65 (73)
162 PRK14720 transcript cleavage f 89.8 8.9 0.00019 43.8 15.3 136 24-166 32-178 (906)
163 PF14938 SNAP: Soluble NSF att 89.7 8.2 0.00018 37.9 13.7 106 81-188 130-250 (282)
164 PF13432 TPR_16: Tetratricopep 89.6 1.8 3.9E-05 31.8 6.9 56 107-165 3-59 (65)
165 PF07035 Mic1: Colon cancer-as 89.2 16 0.00035 32.9 14.5 133 44-201 15-149 (167)
166 KOG3616 Selective LIM binding 88.4 4.7 0.0001 44.1 11.1 71 81-163 747-817 (1636)
167 KOG2376 Signal recognition par 88.4 40 0.00086 36.3 21.6 124 24-169 13-142 (652)
168 PF13424 TPR_12: Tetratricopep 88.4 2.5 5.3E-05 32.3 7.2 60 103-162 7-71 (78)
169 KOG2796 Uncharacterized conser 88.3 16 0.00035 35.4 13.5 161 29-210 155-322 (366)
170 PF12688 TPR_5: Tetratrico pep 88.1 12 0.00026 31.8 11.7 87 109-198 9-101 (120)
171 PF08631 SPO22: Meiosis protei 88.1 28 0.0006 34.1 16.3 172 34-208 4-193 (278)
172 PRK04841 transcriptional regul 88.1 27 0.00058 40.3 18.5 167 25-200 533-719 (903)
173 smart00299 CLH Clathrin heavy 87.5 17 0.00038 31.2 15.6 124 62-217 11-135 (140)
174 COG3629 DnrI DNA-binding trans 87.4 6.2 0.00013 38.7 10.6 81 138-219 154-239 (280)
175 PRK10803 tol-pal system protei 87.2 14 0.0003 36.1 13.1 98 58-166 143-246 (263)
176 COG3629 DnrI DNA-binding trans 87.1 5.7 0.00012 38.9 10.2 79 102-182 154-237 (280)
177 KOG3785 Uncharacterized conser 87.1 36 0.00079 34.4 16.1 157 27-200 327-489 (557)
178 PRK14720 transcript cleavage f 86.9 32 0.00069 39.5 17.2 118 80-202 130-253 (906)
179 KOG1173 Anaphase-promoting com 86.9 38 0.00082 36.3 16.5 132 81-217 395-532 (611)
180 KOG1173 Anaphase-promoting com 86.3 19 0.0004 38.5 13.9 100 81-184 429-534 (611)
181 PF13424 TPR_12: Tetratricopep 86.0 2.2 4.8E-05 32.6 5.7 62 138-199 6-73 (78)
182 PF13929 mRNA_stabil: mRNA sta 85.9 20 0.00042 35.3 13.1 140 36-182 141-288 (292)
183 PLN02789 farnesyltranstransfer 85.4 43 0.00094 33.6 19.4 148 25-185 39-189 (320)
184 KOG1156 N-terminal acetyltrans 85.4 61 0.0013 35.3 17.5 165 27-201 223-434 (700)
185 PLN03098 LPA1 LOW PSII ACCUMUL 85.4 11 0.00025 39.3 11.8 65 99-166 73-141 (453)
186 KOG2053 Mitochondrial inherita 84.8 62 0.0013 36.6 17.5 89 20-119 38-128 (932)
187 KOG2796 Uncharacterized conser 84.6 25 0.00055 34.1 12.7 110 83-200 166-280 (366)
188 PF13414 TPR_11: TPR repeat; P 84.5 5.4 0.00012 29.5 7.0 58 102-162 4-63 (69)
189 KOG2053 Mitochondrial inherita 84.4 26 0.00056 39.4 14.5 103 81-190 24-128 (932)
190 KOG3617 WD40 and TPR repeat-co 84.2 14 0.0003 41.2 12.2 42 25-72 728-771 (1416)
191 PF14626 RNase_Zc3h12a_2: Zc3h 84.1 4.6 0.0001 33.8 6.7 84 339-424 8-97 (122)
192 PF04840 Vps16_C: Vps16, C-ter 83.4 29 0.00063 34.9 13.6 109 25-162 179-287 (319)
193 KOG0985 Vesicle coat protein c 83.2 57 0.0012 37.6 16.4 156 23-217 1104-1259(1666)
194 KOG0985 Vesicle coat protein c 82.6 1E+02 0.0022 35.7 18.4 164 24-208 985-1169(1666)
195 KOG4340 Uncharacterized conser 82.5 54 0.0012 32.5 17.0 172 20-204 7-210 (459)
196 PF13414 TPR_11: TPR repeat; P 82.2 7.4 0.00016 28.7 7.0 63 137-200 3-66 (69)
197 KOG1538 Uncharacterized conser 81.9 14 0.0003 40.0 10.9 90 100-201 746-846 (1081)
198 PF10602 RPN7: 26S proteasome 81.0 27 0.00058 31.8 11.4 33 25-57 38-70 (177)
199 COG3063 PilF Tfp pilus assembl 80.6 54 0.0012 31.2 20.8 162 24-200 70-235 (250)
200 PLN03098 LPA1 LOW PSII ACCUMUL 80.3 49 0.0011 34.7 14.0 63 57-130 74-140 (453)
201 PRK15363 pathogenicity island 80.0 44 0.00094 29.8 14.4 83 81-166 50-132 (157)
202 PF13281 DUF4071: Domain of un 79.7 78 0.0017 32.5 19.4 169 25-202 144-335 (374)
203 PF13371 TPR_9: Tetratricopept 79.0 16 0.00034 27.2 8.0 55 109-166 3-58 (73)
204 KOG1125 TPR repeat-containing 78.2 65 0.0014 34.6 14.3 141 38-191 409-561 (579)
205 KOG4570 Uncharacterized conser 78.2 9.2 0.0002 37.9 7.6 105 51-166 57-164 (418)
206 PRK11906 transcriptional regul 77.6 99 0.0021 32.6 15.4 162 27-197 257-432 (458)
207 KOG1127 TPR repeat-containing 77.0 54 0.0012 37.6 13.8 147 39-198 474-622 (1238)
208 KOG2376 Signal recognition par 76.8 1.1E+02 0.0024 33.1 15.5 152 59-220 340-505 (652)
209 KOG4570 Uncharacterized conser 75.2 18 0.00039 35.9 8.7 114 94-210 57-173 (418)
210 PLN02789 farnesyltranstransfer 74.4 1E+02 0.0022 31.0 20.6 181 25-217 73-265 (320)
211 PF10300 DUF3808: Protein of u 74.1 1.3E+02 0.0027 32.1 17.3 163 29-199 194-374 (468)
212 TIGR02561 HrpB1_HrpK type III 73.7 64 0.0014 28.5 11.4 71 81-157 25-96 (153)
213 PF13176 TPR_7: Tetratricopept 72.8 6.6 0.00014 25.2 3.7 23 104-126 2-24 (36)
214 KOG2297 Predicted translation 72.6 31 0.00068 34.1 9.5 70 116-191 270-340 (412)
215 PF04053 Coatomer_WDAD: Coatom 72.5 42 0.0009 35.4 11.5 132 33-202 271-403 (443)
216 COG4235 Cytochrome c biogenesi 72.5 83 0.0018 31.0 12.6 95 24-127 157-253 (287)
217 KOG3617 WD40 and TPR repeat-co 72.4 76 0.0016 35.8 13.3 118 21-162 755-883 (1416)
218 KOG0553 TPR repeat-containing 72.3 30 0.00066 34.0 9.5 100 111-217 91-192 (304)
219 PF10602 RPN7: 26S proteasome 71.1 47 0.001 30.2 10.2 94 102-198 37-139 (177)
220 PF11207 DUF2989: Protein of u 70.4 42 0.0009 31.2 9.5 82 66-157 115-198 (203)
221 PF10300 DUF3808: Protein of u 70.0 62 0.0013 34.4 12.3 128 25-164 231-374 (468)
222 COG4235 Cytochrome c biogenesi 69.8 64 0.0014 31.8 11.2 100 99-201 154-256 (287)
223 PF02284 COX5A: Cytochrome c o 69.8 17 0.00037 29.9 6.0 59 85-145 29-87 (108)
224 KOG4162 Predicted calmodulin-b 69.3 1.3E+02 0.0029 33.5 14.4 156 33-207 237-392 (799)
225 cd00923 Cyt_c_Oxidase_Va Cytoc 69.1 23 0.00049 28.8 6.5 43 85-127 26-68 (103)
226 PF11663 Toxin_YhaV: Toxin wit 68.9 4.2 9.1E-05 35.0 2.5 32 149-182 107-138 (140)
227 KOG0553 TPR repeat-containing 68.3 68 0.0015 31.6 11.0 96 77-178 92-188 (304)
228 PF13525 YfiO: Outer membrane 68.3 1E+02 0.0022 28.5 15.6 79 25-112 8-88 (203)
229 KOG1125 TPR repeat-containing 67.7 1.8E+02 0.004 31.3 16.4 83 33-127 295-379 (579)
230 PF13762 MNE1: Mitochondrial s 67.7 70 0.0015 28.1 10.0 93 49-150 28-128 (145)
231 TIGR00305 probable toxin-antit 67.6 13 0.00028 30.9 5.4 26 396-423 85-111 (114)
232 KOG1156 N-terminal acetyltrans 67.6 2E+02 0.0043 31.6 17.6 116 98-217 366-484 (700)
233 PF11663 Toxin_YhaV: Toxin wit 67.5 4.5 9.9E-05 34.8 2.5 34 76-111 105-138 (140)
234 PF13176 TPR_7: Tetratricopept 67.5 10 0.00022 24.3 3.7 25 174-198 1-25 (36)
235 PF09205 DUF1955: Domain of un 67.5 71 0.0015 27.8 9.5 61 141-202 90-150 (161)
236 KOG3060 Uncharacterized conser 67.3 1.3E+02 0.0027 29.3 19.9 162 25-201 54-220 (289)
237 PF04184 ST7: ST7 protein; In 67.2 1.4E+02 0.0031 31.7 13.5 58 107-164 265-322 (539)
238 COG4649 Uncharacterized protei 66.8 1E+02 0.0022 28.1 12.6 20 35-54 70-89 (221)
239 COG3118 Thioredoxin domain-con 66.3 1.4E+02 0.0031 29.5 13.0 136 81-221 149-286 (304)
240 KOG2047 mRNA splicing factor [ 64.8 2.3E+02 0.0049 31.3 19.4 167 19-200 383-578 (835)
241 PF09613 HrpB1_HrpK: Bacterial 64.2 1.1E+02 0.0023 27.4 11.7 67 111-184 20-89 (160)
242 COG1569 Predicted nucleic acid 63.4 17 0.00037 31.5 5.1 41 379-419 65-113 (142)
243 KOG1585 Protein required for f 63.0 1.5E+02 0.0033 28.7 13.0 91 104-195 153-250 (308)
244 PF11848 DUF3368: Domain of un 62.8 26 0.00056 24.4 5.2 32 183-214 13-44 (48)
245 KOG0543 FKBP-type peptidyl-pro 62.4 1.9E+02 0.0042 29.8 14.7 96 101-200 257-354 (397)
246 cd00923 Cyt_c_Oxidase_Va Cytoc 61.8 50 0.0011 26.9 7.2 63 116-180 22-84 (103)
247 KOG4162 Predicted calmodulin-b 61.4 2.8E+02 0.006 31.2 16.9 109 90-200 312-422 (799)
248 PF02284 COX5A: Cytochrome c o 61.0 46 0.00099 27.4 6.9 60 119-180 28-87 (108)
249 PF13374 TPR_10: Tetratricopep 61.0 18 0.00039 23.3 4.1 26 102-127 3-28 (42)
250 KOG2280 Vacuolar assembly/sort 60.9 90 0.002 34.7 11.2 96 81-196 699-794 (829)
251 PF13762 MNE1: Mitochondrial s 60.8 1.2E+02 0.0025 26.7 12.5 102 88-190 24-133 (145)
252 PF09613 HrpB1_HrpK: Bacterial 60.7 1.3E+02 0.0027 27.0 11.4 91 59-160 8-99 (160)
253 PF13512 TPR_18: Tetratricopep 60.3 1.2E+02 0.0026 26.6 11.3 81 24-114 12-95 (142)
254 PF13428 TPR_14: Tetratricopep 59.9 33 0.00073 22.9 5.3 26 175-200 4-29 (44)
255 COG4956 Integral membrane prot 59.5 30 0.00065 34.1 6.7 97 317-425 167-270 (356)
256 KOG1127 TPR repeat-containing 57.9 2.1E+02 0.0046 33.2 13.5 84 77-165 573-658 (1238)
257 PF13428 TPR_14: Tetratricopep 57.5 42 0.00091 22.4 5.5 25 103-127 3-27 (44)
258 PF09205 DUF1955: Domain of un 57.4 1.3E+02 0.0029 26.2 13.6 130 81-238 17-149 (161)
259 PF11848 DUF3368: Domain of un 57.2 36 0.00079 23.6 5.2 38 30-67 9-46 (48)
260 PF07035 Mic1: Colon cancer-as 57.1 1.5E+02 0.0032 26.8 15.1 125 20-167 26-150 (167)
261 KOG0276 Vesicle coat complex C 56.4 2.4E+02 0.0051 30.9 13.0 139 23-207 614-753 (794)
262 TIGR02508 type_III_yscG type I 56.4 1.1E+02 0.0023 25.3 8.2 49 148-202 50-98 (115)
263 TIGR03504 FimV_Cterm FimV C-te 56.3 24 0.00052 24.1 4.0 20 145-164 7-26 (44)
264 KOG3165 Predicted nucleic-acid 56.3 28 0.00061 30.8 5.4 30 389-418 128-158 (195)
265 PF13374 TPR_10: Tetratricopep 55.3 31 0.00067 22.1 4.5 27 173-199 3-29 (42)
266 PF00637 Clathrin: Region in C 55.1 3.4 7.4E-05 35.8 -0.4 75 81-163 22-96 (143)
267 PRK15331 chaperone protein Sic 55.1 1E+02 0.0023 27.7 8.9 86 112-200 48-133 (165)
268 KOG2041 WD40 repeat protein [G 54.5 2.1E+02 0.0045 31.9 12.3 156 22-197 735-903 (1189)
269 COG1729 Uncharacterized protei 53.9 2.2E+02 0.0048 27.7 12.1 105 101-210 142-251 (262)
270 PRK10564 maltose regulon perip 53.1 30 0.00065 34.2 5.6 38 24-61 258-295 (303)
271 PF00637 Clathrin: Region in C 52.9 3.7 8.1E-05 35.6 -0.6 129 28-187 12-140 (143)
272 PF07163 Pex26: Pex26 protein; 52.0 1.6E+02 0.0034 29.0 10.1 89 105-195 87-181 (309)
273 COG4700 Uncharacterized protei 51.9 2E+02 0.0044 26.7 14.6 160 27-201 60-226 (251)
274 PHA02875 ankyrin repeat protei 51.5 63 0.0014 33.4 8.3 13 28-40 37-49 (413)
275 KOG1174 Anaphase-promoting com 50.4 3.2E+02 0.0069 28.6 15.0 50 146-197 447-496 (564)
276 KOG1174 Anaphase-promoting com 47.4 3.6E+02 0.0077 28.2 16.8 48 147-196 344-392 (564)
277 PF11846 DUF3366: Domain of un 47.0 85 0.0018 28.7 7.6 31 169-199 141-171 (193)
278 PF11207 DUF2989: Protein of u 45.6 1.8E+02 0.0039 27.1 9.2 73 118-192 123-198 (203)
279 PF07721 TPR_4: Tetratricopept 45.5 35 0.00075 20.0 3.1 21 105-125 5-25 (26)
280 PF13281 DUF4071: Domain of un 44.9 3.7E+02 0.008 27.7 14.0 130 35-166 194-334 (374)
281 PRK14956 DNA polymerase III su 43.9 4.3E+02 0.0094 28.2 13.9 103 85-212 185-288 (484)
282 PHA02875 ankyrin repeat protei 43.8 1.2E+02 0.0026 31.3 9.0 145 29-195 5-155 (413)
283 PF12796 Ank_2: Ankyrin repeat 42.9 84 0.0018 24.1 6.0 9 109-117 31-39 (89)
284 COG1747 Uncharacterized N-term 42.7 4.6E+02 0.01 28.2 13.7 98 98-201 63-160 (711)
285 KOG0414 Chromosome condensatio 42.7 6.5E+02 0.014 29.9 15.3 170 25-205 525-709 (1251)
286 PF06844 DUF1244: Protein of u 42.6 16 0.00035 27.1 1.5 37 403-443 20-56 (68)
287 COG1729 Uncharacterized protei 41.8 3.4E+02 0.0074 26.4 11.7 61 137-200 142-206 (262)
288 PF13470 PIN_3: PIN domain 41.4 22 0.00048 29.5 2.5 23 397-419 95-118 (119)
289 COG5108 RPO41 Mitochondrial DN 41.3 3.3E+02 0.0072 30.2 11.4 89 63-163 33-129 (1117)
290 COG1609 PurR Transcriptional r 40.5 2.2E+02 0.0048 28.6 10.0 112 305-425 127-253 (333)
291 TIGR03504 FimV_Cterm FimV C-te 40.3 62 0.0013 22.1 4.0 21 107-127 5-25 (44)
292 KOG3040 Predicted sugar phosph 39.5 37 0.00079 31.7 3.6 131 277-423 65-212 (262)
293 KOG1550 Extracellular protein 39.2 5.4E+02 0.012 28.0 15.9 169 33-213 259-438 (552)
294 PF11838 ERAP1_C: ERAP1-like C 39.0 3.9E+02 0.0083 26.2 13.3 83 81-167 145-231 (324)
295 COG3898 Uncharacterized membra 36.9 5E+02 0.011 27.0 16.5 171 25-213 190-368 (531)
296 PRK10564 maltose regulon perip 36.7 66 0.0014 31.9 5.1 35 135-169 254-289 (303)
297 TIGR02561 HrpB1_HrpK type III 36.3 3.1E+02 0.0067 24.3 10.9 51 112-167 21-74 (153)
298 KOG0276 Vesicle coat complex C 36.0 5.7E+02 0.012 28.1 12.1 135 33-207 647-781 (794)
299 COG0457 NrfG FOG: TPR repeat [ 35.5 2.9E+02 0.0063 23.8 20.5 164 25-200 61-230 (291)
300 PF12926 MOZART2: Mitotic-spin 35.4 1.5E+02 0.0032 23.6 5.9 60 25-94 12-71 (88)
301 PF13174 TPR_6: Tetratricopept 35.4 40 0.00088 20.3 2.4 21 107-127 6-26 (33)
302 PF10366 Vps39_1: Vacuolar sor 35.3 1.3E+02 0.0028 24.9 6.1 27 174-200 41-67 (108)
303 COG4700 Uncharacterized protei 34.8 3.8E+02 0.0082 24.9 15.9 119 97-220 85-206 (251)
304 KOG0548 Molecular co-chaperone 34.7 3E+02 0.0064 29.5 9.8 98 80-182 16-114 (539)
305 KOG2114 Vacuolar assembly/sort 34.3 4.1E+02 0.009 30.2 11.1 105 81-198 412-516 (933)
306 PF10366 Vps39_1: Vacuolar sor 34.2 2.6E+02 0.0056 23.1 7.7 28 138-165 40-67 (108)
307 KOG4567 GTPase-activating prot 34.0 1.7E+02 0.0038 29.1 7.4 72 86-163 263-344 (370)
308 smart00544 MA3 Domain in DAP-5 33.9 2.6E+02 0.0056 22.8 8.3 23 105-127 6-28 (113)
309 COG4455 ImpE Protein of avirul 33.5 2.9E+02 0.0063 26.3 8.5 77 103-181 3-81 (273)
310 COG0735 Fur Fe2+/Zn2+ uptake r 33.4 1.8E+02 0.004 25.4 7.1 61 159-220 8-68 (145)
311 COG4649 Uncharacterized protei 33.1 3.9E+02 0.0084 24.6 15.4 125 81-207 73-202 (221)
312 PF11846 DUF3366: Domain of un 33.1 1.7E+02 0.0036 26.7 7.2 62 105-166 112-173 (193)
313 PRK08691 DNA polymerase III su 33.0 6.3E+02 0.014 28.4 12.5 43 83-127 181-224 (709)
314 PF13431 TPR_17: Tetratricopep 32.5 47 0.001 21.0 2.4 23 99-121 11-33 (34)
315 TIGR03586 PseI pseudaminic aci 32.5 1.9E+02 0.0041 29.2 7.8 96 338-441 144-251 (327)
316 TIGR00028 Mtu_PIN_fam Mycobact 32.0 1.3E+02 0.0027 25.5 5.9 26 394-419 101-126 (142)
317 PF00515 TPR_1: Tetratricopept 31.6 1.2E+02 0.0027 18.3 4.5 27 174-200 3-29 (34)
318 PF10130 PIN_2: PIN domain; I 31.6 38 0.00082 29.3 2.4 27 393-419 87-113 (133)
319 PRK12798 chemotaxis protein; R 31.4 6.2E+02 0.014 26.4 12.2 123 60-197 84-210 (421)
320 PRK07003 DNA polymerase III su 31.3 6.6E+02 0.014 28.7 12.2 44 171-215 245-288 (830)
321 KOG3360 Acylphosphatase [Energ 31.1 34 0.00074 27.6 1.8 28 302-329 57-84 (98)
322 PF10579 Rapsyn_N: Rapsyn N-te 31.1 1.2E+02 0.0025 23.8 4.7 46 113-158 18-64 (80)
323 KOG0543 FKBP-type peptidyl-pro 30.7 5.7E+02 0.012 26.4 10.8 105 110-217 217-334 (397)
324 TIGR03569 NeuB_NnaB N-acetylne 30.6 2.3E+02 0.005 28.6 8.1 97 338-440 143-251 (329)
325 PF12796 Ank_2: Ankyrin repeat 30.4 97 0.0021 23.8 4.5 83 31-137 2-87 (89)
326 COG4105 ComL DNA uptake lipopr 30.3 5.1E+02 0.011 25.1 22.1 170 19-200 30-232 (254)
327 KOG4077 Cytochrome c oxidase, 30.1 2.3E+02 0.005 24.4 6.6 34 94-127 77-110 (149)
328 KOG1550 Extracellular protein 30.0 7.5E+02 0.016 26.9 14.4 153 38-202 227-394 (552)
329 smart00670 PINc Large family o 29.5 53 0.0011 26.6 2.9 24 396-419 83-107 (111)
330 PRK07003 DNA polymerase III su 29.4 9.1E+02 0.02 27.7 13.0 84 82-170 180-278 (830)
331 PF04184 ST7: ST7 protein; In 29.1 7.4E+02 0.016 26.6 15.6 72 79-152 272-346 (539)
332 COG1412 Uncharacterized protei 29.1 51 0.0011 28.6 2.7 24 396-419 83-107 (136)
333 PRK08691 DNA polymerase III su 28.7 7.9E+02 0.017 27.7 12.3 89 118-209 181-282 (709)
334 PF03102 NeuB: NeuB family; I 28.7 79 0.0017 30.4 4.3 97 335-439 120-228 (241)
335 COG2178 Predicted RNA-binding 28.3 4.9E+02 0.011 24.2 10.6 108 82-200 19-149 (204)
336 PF14689 SPOB_a: Sensor_kinase 28.1 86 0.0019 23.0 3.5 25 176-200 27-51 (62)
337 KOG4077 Cytochrome c oxidase, 27.7 3.6E+02 0.0078 23.3 7.4 47 119-166 67-113 (149)
338 KOG2908 26S proteasome regulat 27.7 5.8E+02 0.013 25.9 9.9 47 81-127 90-141 (380)
339 PF07079 DUF1347: Protein of u 27.0 7.8E+02 0.017 26.1 13.2 130 79-213 19-173 (549)
340 PF02847 MA3: MA3 domain; Int 26.9 1.4E+02 0.003 24.4 5.0 23 105-127 6-28 (113)
341 COG3947 Response regulator con 26.4 3.3E+02 0.0071 27.1 7.8 70 139-209 281-355 (361)
342 KOG0481 DNA replication licens 26.4 2.3E+02 0.0051 30.4 7.3 143 18-166 546-713 (729)
343 cd06594 GH31_glucosidase_YihQ 26.2 3.3E+02 0.0072 27.2 8.5 84 305-396 27-118 (317)
344 PRK15117 ABC transporter perip 26.1 19 0.00042 33.8 -0.4 44 316-362 163-207 (211)
345 PF09454 Vps23_core: Vps23 cor 25.8 1.1E+02 0.0024 22.8 3.7 51 55-114 5-55 (65)
346 COG3898 Uncharacterized membra 25.8 7.8E+02 0.017 25.7 15.0 26 102-127 189-214 (531)
347 PF07079 DUF1347: Protein of u 25.5 8.3E+02 0.018 25.9 18.5 174 35-220 18-236 (549)
348 PF11817 Foie-gras_1: Foie gra 25.1 5.3E+02 0.011 24.6 9.4 57 143-199 184-245 (247)
349 PRK14951 DNA polymerase III su 25.0 9.7E+02 0.021 26.5 12.4 85 129-217 197-294 (618)
350 smart00638 LPD_N Lipoprotein N 24.9 9.1E+02 0.02 26.2 16.0 116 56-186 308-432 (574)
351 PRK14136 recX recombination re 24.7 7.1E+02 0.015 24.9 18.0 128 24-187 163-290 (309)
352 PF11817 Foie-gras_1: Foie gra 24.6 2.9E+02 0.0062 26.4 7.4 61 104-164 181-245 (247)
353 PF02847 MA3: MA3 domain; Int 24.6 2.9E+02 0.0063 22.4 6.6 74 141-216 6-81 (113)
354 cd08819 CARD_MDA5_2 Caspase ac 24.4 3.7E+02 0.008 21.5 7.4 67 85-158 21-87 (88)
355 PRK15331 chaperone protein Sic 24.3 5.3E+02 0.011 23.2 13.6 83 81-166 52-134 (165)
356 COG5210 GTPase-activating prot 24.2 5.6E+02 0.012 27.4 10.3 154 39-207 319-481 (496)
357 PRK07764 DNA polymerase III su 24.1 1.1E+03 0.023 27.2 12.8 43 174-218 250-292 (824)
358 KOG1538 Uncharacterized conser 24.0 4.1E+02 0.0088 29.5 8.6 118 30-167 710-847 (1081)
359 PHA02874 ankyrin repeat protei 23.4 3.5E+02 0.0076 28.1 8.4 56 142-205 126-183 (434)
360 PF12813 XPG_I_2: XPG domain c 23.3 1.1E+02 0.0024 29.5 4.2 41 379-423 8-52 (246)
361 PF14689 SPOB_a: Sensor_kinase 23.3 1.2E+02 0.0027 22.2 3.6 28 138-165 24-51 (62)
362 PF09797 NatB_MDM20: N-acetylt 23.1 3.2E+02 0.0069 27.8 7.9 55 82-138 199-253 (365)
363 KOG4555 TPR repeat-containing 23.0 5.1E+02 0.011 22.6 11.7 85 81-167 58-145 (175)
364 PF13181 TPR_8: Tetratricopept 23.0 1.8E+02 0.004 17.4 4.4 26 174-199 3-28 (34)
365 PF12926 MOZART2: Mitotic-spin 22.6 4E+02 0.0087 21.2 7.9 44 158-201 29-72 (88)
366 PRK14951 DNA polymerase III su 22.5 1.1E+03 0.023 26.2 13.0 85 83-171 186-284 (618)
367 PRK10866 outer membrane biogen 22.4 6.8E+02 0.015 23.8 15.5 137 28-164 74-239 (243)
368 PRK11906 transcriptional regul 22.4 9.4E+02 0.02 25.5 12.2 111 37-162 318-432 (458)
369 cd08819 CARD_MDA5_2 Caspase ac 22.1 4.1E+02 0.009 21.2 7.1 66 120-192 21-86 (88)
370 smart00386 HAT HAT (Half-A-TPR 22.0 1.8E+02 0.0039 16.9 4.0 28 151-179 1-28 (33)
371 COG3688 Predicted RNA-binding 22.0 2.1E+02 0.0045 25.6 5.1 79 356-442 48-135 (173)
372 cd00008 53EXOc 5'-3' exonuclea 21.8 6.1E+02 0.013 24.1 9.1 38 382-419 92-134 (240)
373 KOG0624 dsRNA-activated protei 21.5 8.8E+02 0.019 24.8 20.4 237 32-312 115-369 (504)
374 COG2454 Uncharacterized conser 21.3 1.2E+02 0.0027 28.0 3.8 79 316-396 66-168 (211)
375 COG4003 Uncharacterized protei 21.1 3.1E+02 0.0067 21.6 5.3 38 177-215 36-73 (98)
376 KOG0403 Neoplastic transformat 21.1 4.9E+02 0.011 27.5 8.3 64 141-205 513-576 (645)
377 smart00804 TAP_C C-terminal do 21.1 90 0.0019 23.2 2.4 23 37-59 39-62 (63)
378 cd00280 TRFH Telomeric Repeat 20.9 5.9E+02 0.013 23.5 7.9 68 81-152 84-158 (200)
379 KOG0548 Molecular co-chaperone 20.6 1.1E+03 0.023 25.5 15.5 44 113-158 370-413 (539)
380 COG3947 Response regulator con 20.2 6.5E+02 0.014 25.1 8.6 43 175-218 282-324 (361)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-36 Score=338.74 Aligned_cols=281 Identities=12% Similarity=0.137 Sum_probs=238.4
Q ss_pred CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC
Q 010790 19 NPNPE-TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (501)
Q Consensus 19 ~~~p~-~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~ 97 (501)
...|+ .+||+||.+|++.|++++|+++|++|.+.|+.||.+||++||.+|++.+ ++++|+++|++|.+.|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------QVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------CHHHHHHHHHHHHHcCC
Confidence 33444 5888888888888888888888888888888888888888888888887 89999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhh--cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010790 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNE--FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (501)
Q Consensus 98 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~--~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~ 175 (501)
.||..|||+||.+|++.|++++|+++|++| .. .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM-~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999 65 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceE
Q 010790 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 255 (501)
Q Consensus 176 ~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~ 255 (501)
|+||.+|++.|+.++|.++|++|...|+.||..|+.+++..|...+ ..-.+..+.+.+.+.|.... ..
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G---~~eeA~~l~~eM~k~G~~pd---------~~ 685 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG---DLDKAFEILQDARKQGIKLG---------TV 685 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCC---------HH
Confidence 9999999999999999999999999999999999999999885543 11234445555555443222 23
Q ss_pred EEEeeecCCCCCCCCCCcccccC-CC----HHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCCccEE
Q 010790 256 VKRGSVDESGKCCSCGDQLACVD-ID----DAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAI 320 (501)
Q Consensus 256 v~~~~v~~~gkCg~~~~al~~~~-l~----~~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~~D~v 320 (501)
+-+++|++|.+||....++.+|+ |. ..+...|+.+|.+++..|+..++++.|++|.+.+..||.+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 45689999999999999998875 31 2578899999999999999999999999999988777754
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-35 Score=333.57 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=207.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---------------------------CCC
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA---------------------------TDP 75 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~---------------------------~~~ 75 (501)
..+||+||.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.+ +++
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 35899999999999999999999999999999999999999998887764 122
Q ss_pred -------------------------------CCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010790 76 -------------------------------SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLI 124 (501)
Q Consensus 76 -------------------------------~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~ 124 (501)
|++.|.+++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555
Q ss_pred HHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 010790 125 KRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC 204 (501)
Q Consensus 125 ~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~ 204 (501)
+.| .+.|+.|+..+||+||.+|+++|++++|.++|++|.+ +|.++||+||.+|+++|+.++|+.+|++|.. ++.
T Consensus 413 ~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 413 ELA-ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHH-HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 555 5555555555556666666666666666666666643 3555677777777777777777777777765 589
Q ss_pred CCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEEEeeecCCCCCCCCCCcccccCCCHHHH
Q 010790 205 VNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAET 284 (501)
Q Consensus 205 p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~~~~v~~~gkCg~~~~al~~~~l~~~e~ 284 (501)
||..|+.+++.+|+..+.- -....++..+.+.|-..+ -.+.+++|++|++||..+.++.+|+..+.+.
T Consensus 487 pd~~t~~~lL~a~~~~g~l---~~~~~i~~~~~~~g~~~~---------~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 487 PNSVTLIAALSACARIGAL---MCGKEIHAHVLRTGIGFD---------GFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred CCHhHHHHHHHHHhhhchH---HHhHHHHHHHHHhCCCcc---------ceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 9999999999999765421 134556666666664433 3678899999999999999999987558899
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCCccEEE
Q 010790 285 ERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIV 321 (501)
Q Consensus 285 ~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~~D~v~ 321 (501)
.+|+.+|.+++.+|+..++++.|++|.+.+..||.+.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999999999998888765
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=323.25 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-----------------------CCCCCChh
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA-----------------------TDPSSKDS 80 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~-----------------------~~~~~k~~ 80 (501)
.+|+++|.+|++.++++.|..++..|.+.|+.||..+||.||.+|++.+ +.++++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 4666666666666666666666666666666666666666666665555 12233334
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
++++|+++|++|.+.|+.||..||+++|++|++.|+.+.+.+++..| .+.|+.||..+||+||++|+++|++++|.++|
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~-~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV-LKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH-HHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777 67788888889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcC
Q 010790 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNG 240 (501)
Q Consensus 161 ~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g 240 (501)
++|.. +|.++||+||.+|++.|+.++|+++|++|...|+.|+..|+.+++.+|+..+. .-.+..+.+.+.+.|
T Consensus 283 ~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~---~~~a~~i~~~m~~~g 355 (697)
T PLN03081 283 DGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL---LEHAKQAHAGLIRTG 355 (697)
T ss_pred HhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc---hHHHHHHHHHHHHhC
Confidence 99964 68899999999999999999999999999999999999999999999966542 123456666666655
Q ss_pred CcccCCccccCCceEEEEeeecCCCCCCCCCCcccccC-CCHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCCccE
Q 010790 241 GGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVD-IDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEA 319 (501)
Q Consensus 241 ~~~~g~g~~~~~~w~v~~~~v~~~gkCg~~~~al~~~~-l~~~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~~D~ 319 (501)
-. .+..+.+++|++|++||..+.|+++|+ +...+..+|+.+|.+++.+|+..++++.|++|++.+..||.
T Consensus 356 ~~---------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 356 FP---------LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred CC---------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 32 244678899999999999999999986 66689999999999999999999999999999999988886
Q ss_pred EE
Q 010790 320 IV 321 (501)
Q Consensus 320 v~ 321 (501)
+.
T Consensus 427 ~T 428 (697)
T PLN03081 427 VT 428 (697)
T ss_pred HH
Confidence 55
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-34 Score=320.67 Aligned_cols=280 Identities=16% Similarity=0.169 Sum_probs=246.7
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
+...+||.+|.+|++.|++++|+++|++|.+.|+.||.++||+||.+|++.+ ++++|.++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--------~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--------KVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--------CHHHHHHHHHHHHHcCCCCC
Confidence 4446999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL--MGLSLEQQEIAAL 178 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~--~gv~pd~~t~~~L 178 (501)
..|||+||.+|++.|++++|+++|++| ...|+.||.+|||+||.+|++.|++++|+++|++|.. .|+.||..+|++|
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEEE
Q 010790 179 LKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKR 258 (501)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~~ 258 (501)
|.+|++.|+.++|.++|++|.+.++.|+..++..++..|...+ ....+..+.+.+.+.|-..+ ...-+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G---~~deAl~lf~eM~~~Gv~PD---------~~Tyn 653 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG---DWDFALSIYDDMKKKGVKPD---------EVFFS 653 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC---------HHHHH
Confidence 9999999999999999999999999999999999999996543 12234444444555442221 12235
Q ss_pred eeecCCCCCCCCCCcccccCCCH-----HHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCCccEEE
Q 010790 259 GSVDESGKCCSCGDQLACVDIDD-----AETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIV 321 (501)
Q Consensus 259 ~~v~~~gkCg~~~~al~~~~l~~-----~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~~D~v~ 321 (501)
++|+.++++|....++.+++... .+...++..|..++..|+..++++.|++|.+.+..||++.
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 78888999999988888765322 3567899999999999999999999999998888887644
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-34 Score=328.85 Aligned_cols=280 Identities=13% Similarity=0.090 Sum_probs=231.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC------------------------------
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA------------------------------ 72 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~------------------------------ 72 (501)
..+||++|.+|++.|++++|+++|++|...|+.||.+||+++|.+|+..+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 35999999999999999999999999999999999999998888876432
Q ss_pred ----------------------------CCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010790 73 ----------------------------TDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLI 124 (501)
Q Consensus 73 ----------------------------~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~ 124 (501)
+.+|++.|.+++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.+++
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 1234456666777777777777788888888888888888888888888888
Q ss_pred HHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 010790 125 KRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC 204 (501)
Q Consensus 125 ~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~ 204 (501)
..| .+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 312 ~~~-~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 312 GYV-VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHH-HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 888 777888888888888888888888888888888886 467889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEEEeeecCCCCCCCCCCcccccC-CCHHH
Q 010790 205 VNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVD-IDDAE 283 (501)
Q Consensus 205 p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~~~~v~~~gkCg~~~~al~~~~-l~~~e 283 (501)
|+..|+.+++.+|...+. .-.+..+.+.+.+.|.. .+..+.+++|++|++||..+.++++|+ +..++
T Consensus 387 Pd~~t~~~ll~a~~~~g~---~~~a~~l~~~~~~~g~~---------~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 387 PDEITIASVLSACACLGD---LDVGVKLHELAERKGLI---------SYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred CCceeHHHHHHHHhccch---HHHHHHHHHHHHHhCCC---------cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 999999999999965531 12344555566665432 233566889999999999999999986 67789
Q ss_pred HHHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCCccEE
Q 010790 284 TERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAI 320 (501)
Q Consensus 284 ~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~~D~v 320 (501)
..+|+.+|.+++.+|...++++.|++|+. +.+||.+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 99999999999999999999999999986 3555544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=3.9e-31 Score=293.21 Aligned_cols=259 Identities=9% Similarity=-0.011 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.+||+||++|+++|++++|.++|++|.. +|.++||+||.+|.+.| +.++|+++|++|.+.|+.||..|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g--------~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHG--------YSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCCCCHHH
Confidence 4888888888888888888888888864 46688888888888888 88888888888888888888888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
|+++|++|++.|++++|.+++.+| .+.|+.||..+||+||++|+++|++++|.++|++|.+ ||..+||+||.+|+
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 888888888888888888888888 8888888888888888888888888888888888863 67788888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHH-hcCCcccCCccccCCceEEEEeeec
Q 010790 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVL-KNGGGWHGLGWIGQGKWVVKRGSVD 262 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~-~~g~~~~g~g~~~~~~w~v~~~~v~ 262 (501)
+.|+.++|+++|++|.+.|+.||..|+..++.+|...+.- -.+..+.+.+. ..|-.. +...-+.+|+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~---~~a~~~f~~m~~~~g~~p---------~~~~y~~li~ 470 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS---EQGWEIFQSMSENHRIKP---------RAMHYACMIE 470 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHhcCCCC---------CccchHhHHH
Confidence 8888888888888888888888888888888888654311 11222333332 223211 1123356778
Q ss_pred CCCCCCCCCCcccccCCCH--HHHHHHHHHHHHHHHhhhHHhhHHHHHHHH
Q 010790 263 ESGKCCSCGDQLACVDIDD--AETERFAQSVAALAMEREVKANFSEFQDWL 311 (501)
Q Consensus 263 ~~gkCg~~~~al~~~~l~~--~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l 311 (501)
.++++|...+|++.++-.+ .+...|++++.++..+|+...+...+++++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 8888888888877754221 345567777776666665544444444443
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.93 E-value=1.4e-26 Score=207.36 Aligned_cols=135 Identities=30% Similarity=0.526 Sum_probs=101.8
Q ss_pred cEEEeCccccccccccCCCCcCchhHHHHHHHHHHhcCCcceEEEeccccc-CCCCCCcchHHHHHHHHhcCeEEeCCCC
Q 010790 318 EAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRL-RSLWENPSHRNLVEEWNEKGVLYMTPHG 396 (501)
Q Consensus 318 D~v~Dg~Nv~~~~~~~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 396 (501)
-|||||+|||+.+++ ...|++++|..+|++|+++ |+++++|++..+. .......++++.|++|.+.+.+++||++
T Consensus 4 ~VVIDG~NVA~~~~~--~~~f~~~~i~~~v~~~~~r--G~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~ 79 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGN--QKFFSVRGIQIAVEYFKSR--GHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSG 79 (155)
T ss_dssp -EEEEHHHHHHHHTT--TTSEEHHHHHHHHHHHHHT--T---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EE
T ss_pred EEEEeCHHHHhhcCC--CCCcCHHHHHHHHHHHHHc--CCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCC
Confidence 389999999986544 3349999999999999999 6677777765553 2234567788999999999999999999
Q ss_pred CC--------CcHHHHHHHHhcCceEEeccchhhhHhhhcCchhHHHhhhccEEEEEEecCeeeeeCCCCcc
Q 010790 397 SN--------DDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQVHYTFVKGNLKLQMPPPYS 460 (501)
Q Consensus 397 ~~--------DD~~~l~aa~~~~~~~vsnD~~Rdh~~~~~~~~~f~rW~~~hq~~~~~~~~~~~~~~p~~~~ 460 (501)
++ ||+|||++|.+.+|+|||||+||||.+ +...|.+|.++|+|.|+|.++.+.+... |+-
T Consensus 80 ~~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~~~~d-~~~ 147 (155)
T PF11977_consen 80 SNYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFMPPPD-PLG 147 (155)
T ss_dssp EETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE--SS-TTT
T ss_pred CCCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEEcCCC-ccC
Confidence 86 999999999999999999999999999 7789999999999999999888877554 554
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=5.4e-13 Score=95.63 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=32.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 135 PRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 135 P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
||.+|||++|.+|++.|++++|+++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.1e-12 Score=93.93 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH
Q 010790 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~ 149 (501)
||+++||+||++|++.|++++|.++|++| .+.|+.||..||+.||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999 999999999999999999985
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=1.4e-09 Score=112.28 Aligned_cols=183 Identities=10% Similarity=0.003 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~---~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
..+..+...|.+.|++++|..+++.+...+..++ ...+..|...+...+ ++++|..+|+++.+. ..++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g--------~~~~A~~~~~~~l~~-~~~~ 140 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG--------LLDRAEELFLQLVDE-GDFA 140 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcC-Ccch
Confidence 4677788888888888888888888877543322 234566666666666 788888888888764 2346
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~ 176 (501)
..+++.++..+.+.|++++|.++++.+ .+.+-.+. ...|..+...+.+.|+.++|..+|+++.+.. ..+...+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 218 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASI 218 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHH
Confidence 778888888888888888888888888 54432221 1234566667778888888888888887643 22355777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
.+...|.+.|+.++|.++|+++....-.....++..+...+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 77788888888888888888887652221123344444444
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=4e-10 Score=111.51 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=149.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
+++|.+||.+.||-...+.|.++|.+......+.+..+||.||.+-+... ..++..+|....+.||..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------------~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------------GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------------cHHHHHHHHHhhcCCchH
Confidence 46999999999999999999999999999999999999999998655443 478999999999999999
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHH-HHHHHHHHH----HCCCCC---
Q 010790 103 SVTSVARLAASKNDGDY----AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEK-AYEVEEHMG----LMGLSL--- 170 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~----A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~-A~~lf~~M~----~~gv~p--- 170 (501)
|||++++..++.|+++. |.+++.+| ++.|+.|.+.+|..+|.-+++-+|..+ |..+..++. .+.++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999998764 67889999 999999999999999999998888643 222222222 112222
Q ss_pred ----------------------------------------C---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 171 ----------------------------------------E---QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 171 ----------------------------------------d---~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
+ ..-|.-+....|+....+.-+.++..|.-+-..|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 1 123455566666777778889999999999999999
Q ss_pred HHHHHHHHHhcc
Q 010790 208 ETGKIIEDWFSG 219 (501)
Q Consensus 208 ~t~~~i~~~f~~ 219 (501)
.+...|+++...
T Consensus 434 ~~m~~~lrA~~v 445 (625)
T KOG4422|consen 434 QTMIHLLRALDV 445 (625)
T ss_pred hhHHHHHHHHhh
Confidence 999999987643
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.26 E-value=1.3e-09 Score=112.52 Aligned_cols=178 Identities=14% Similarity=0.081 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~----~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p 99 (501)
..++.++..|.+.|+.++|+++|+.+.+.+-.+.. ..|..+...+...+ ++++|..+|+++.+.. +.
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~ 212 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG--------DLDAARALLKKALAAD-PQ 212 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHhHC-cC
Confidence 35566666666666666666666666554322211 11222333334444 7888888888887643 22
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
+..++..+...|.+.|++++|.++|+++ .... |+ ..+++.+..+|++.|+.++|..+++.+... .|+...+..
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 287 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERV-EEQD--PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLA 287 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHH
Confidence 4557777888888999999999999988 4432 33 356788888999999999999999888765 466667788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+...+.+.|+.++|..+|.++.+. .|+..++..++..+
T Consensus 288 la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 288 LAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 888999999999999999888765 68887776665554
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=7.7e-09 Score=102.59 Aligned_cols=180 Identities=15% Similarity=0.087 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCC--------------------CCCCCChhhHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSA--------------------TDPSSKDSALR 83 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~--------------------~~~~~k~~~~~ 83 (501)
+=|.|+.+-+ .|.+.++.-+|+.|+..|+..++..=-.|+. .|-... .+..=|.|++.
T Consensus 118 ~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 5577776654 5789999999999999999888888777777 333222 11122445543
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 010790 84 HGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (501)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M 163 (501)
+ ++-+. .+-...||.+||+|.|+--..+.|.+++++- .....+.+..+||.+|.+-.-.- ..++..+|
T Consensus 197 d---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 197 D---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred H---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 3 33332 2345679999999999999999999999999 78888889999999998754322 27899999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 164 GLMGLSLEQQEIAALLKVSAETGRVEK----VYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 164 ~~~gv~pd~~t~~~Li~~~~~~g~~~~----a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
....+.||..|+|+++++.++.|+++. |++++.+|++-|+.|+-++|..|+.-|
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 999999999999999999999997765 578999999999999999998888877
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.83 E-value=1.5e-06 Score=98.48 Aligned_cols=179 Identities=11% Similarity=-0.006 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
..+..+...|.+.|++++|+.+++.+.+.. +.+..+|..+...+...+ ++++|...|+.+.+.. +.+...
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG--------DLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCChHH
Confidence 467889999999999999999999988643 456778888888888877 8999999999988753 335677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
+..+...+...|++++|..+|+++ ... .+.+..++..+...+...|+.+.|..+++.|.... ..+...+..+...+.
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRA-LEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-Hhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 889999999999999999999998 432 23457889999999999999999999999998775 346778888889999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+.|+.++|...|..+.... |+..++..+...+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 9999999999999988764 5445554555554
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.83 E-value=1.8e-06 Score=97.77 Aligned_cols=266 Identities=9% Similarity=0.021 Sum_probs=180.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
...+..+...|.+.|+.++|..+|+++.+.+ +.+...+..+...+...+ ++++|..+++.+... .+.+..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~-~~~~~~ 602 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG--------QLKKALAILNEAADA-APDSPE 602 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC--------CHHHHHHHHHHHHHc-CCCCHH
Confidence 4588899999999999999999999998764 245566777777888777 899999999999764 345788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
+|..+...|...|++++|...|+++ .... +.+...+..+...|.+.|+.++|..+|+.+.... +.+..+|..+...+
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKL-LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 9999999999999999999999999 4432 2356788899999999999999999999998653 33578999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEEEeeec
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVD 262 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~~~~v~ 262 (501)
...|+.++|..+++.+.... ..+...+..+...+...+ .-.-.....+.++..... . .+...+..
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~-----------~-~~~~~l~~ 744 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK--DYPAAIQAYRKALKRAPS-----------S-QNAIKLHR 744 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCC-----------c-hHHHHHHH
Confidence 99999999999999998775 233334444433332211 111111222333222110 0 00001112
Q ss_pred CCCCCCCCCCcccc----cCCCHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHcCC
Q 010790 263 ESGKCCSCGDQLAC----VDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNAN 316 (501)
Q Consensus 263 ~~gkCg~~~~al~~----~~l~~~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~~~ 316 (501)
.+...|....+... +...+.+...+.....-+...|+..+++..|++.++..+.
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 22223333333322 1222333333333333444567778899999999886543
No 16
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=3.9e-09 Score=68.73 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=16.3
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 010790 132 NVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (501)
Q Consensus 132 gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M 163 (501)
|+.||.+|||+||.+||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 17
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.1e-08 Score=66.58 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 95 NNVIPNEASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 95 ~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
+|+.||.+|||+||++||+.|++++|+++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 489999999999999999999999999999999
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.56 E-value=5.5e-07 Score=96.65 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=125.9
Q ss_pred CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHHHHHhCC
Q 010790 18 TNPNPE-TNFLINLQSCTKSKDLTTAISLYESAHSQNL------------------------RLSLHHFNALLYLCSDSA 72 (501)
Q Consensus 18 ~~~~p~-~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv------------------------~p~~~ty~~LL~~c~~~~ 72 (501)
.+.-|+ .+|.++|.-||..||.+.|- +|.-|+-+.. .|.+-||..|+.+|...|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 334454 59999999999999999998 7777763322 355667777777777776
Q ss_pred -CCCCCChhhHHHHHHHHHHHHh----CCC-----------------CCCHHHHHHHHHHHHhCCCHHHHHH--------
Q 010790 73 -TDPSSKDSALRHGFRVFDQMLS----NNV-----------------IPNEASVTSVARLAASKNDGDYAFV-------- 122 (501)
Q Consensus 73 -~~~~~k~~~~~~a~~lf~~M~~----~g~-----------------~pd~~t~~~li~~~~~~g~~~~A~~-------- 122 (501)
+. .++.+.+.+..... .|+ -||..+ +|....-.|-++.+.+
T Consensus 98 Dli------~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 98 DLI------LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred chH------HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcc
Confidence 11 13334442222221 222 134332 2222222333333332
Q ss_pred ----------------------HHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 123 ----------------------LIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 123 ----------------------l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
+.+.. +...-.|+..+|.+++.+-.-+|+++.|..+..+|.++|+..+..-|-.||-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 22333 2222258999999999999999999999999999999999999887777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHh
Q 010790 181 VSAETGRVEKVYQYLQKLRSTVRCVNEETGKI-IEDWF 217 (501)
Q Consensus 181 ~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~-i~~~f 217 (501)
+ .+...-+..+++-|++.|+.|+.+|+.. ++..+
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 7 7788888999999999999999999844 34444
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.54 E-value=7.3e-05 Score=70.00 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
..+..+...|.+.|+.++|...|+++.+.. +.+...+..+...+...+ +.++|.+.|++..+... .+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~~-~~~~~ 101 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG--------ELEKAEDSFRRALTLNP-NNGDV 101 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCC-CCHHH
Confidence 477888899999999999999999987653 234556666666777777 89999999999877543 35667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
+..+...+...|++++|...+.+. ..... ......+..+-..|...|+.++|...|++.....- .+...+..+...+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHH
Confidence 888899999999999999999998 54322 22345667777888999999999999999876532 2456788899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 010790 183 AETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~ 201 (501)
...|+.++|..++++....
T Consensus 180 ~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998776
No 20
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.4e-07 Score=95.75 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=84.8
Q ss_pred CccEEEeCccccccccccCCCCcCchhHHHHHHHHHHhcCCcceEEEecccccCCCCCCcchHHHHHHHHhcCeEEeCCC
Q 010790 316 NYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYMTPH 395 (501)
Q Consensus 316 ~~D~v~Dg~Nv~~~~~~~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 395 (501)
-.-+||||.|||+.++| +..|+++.+...++++.++++ +.+-+++...+.... .+ ..++.++.++..+.|||+
T Consensus 12 ~~P~~i~~~~~~ls~G~--~~~f~~r~~~v~~~~~~~~~~-rd~tv~~~~~r~e~~--~p--~~~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGN--EEVFSCRGILVSVDWFLQRGH-RDITVLVPSWRKEAT--RP--DAILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccc--hhheecccceeehhhhhhhcc-cCcchhchhhhhcCC--ch--HHHHHHHHhccccccCCC
Confidence 45689999999999887 668999999999999999877 444444443332221 12 238899999999999999
Q ss_pred C--------CCCcHHHHHHHHhcCceEEeccchhhhHhhh
Q 010790 396 G--------SNDDWYWLYAAVKLRCLLVTNDEMRDHIFEL 427 (501)
Q Consensus 396 ~--------~~DD~~~l~aa~~~~~~~vsnD~~Rdh~~~~ 427 (501)
. ++||+|++..|++++++|++||.+||.+-+.
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 8 8999999999999999999999999986643
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.32 E-value=0.00022 Score=66.73 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC-CCHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEA 102 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~-pd~~ 102 (501)
..+..+...|...|+.++|.+.|++..+..- .+...+..+-..+...+ ++++|.+.|+........ ....
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhccccccchH
Confidence 4677788899999999999999999887542 24455656656666666 899999999998874322 2345
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
.+..+...+...|+.++|...+++. .... +.+...+..+...+...|+.++|...+++.... ...+...+..+...+
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRA-LQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 6777888899999999999999998 4432 224567888888999999999999999998776 344667777888888
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010790 183 AETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~ 200 (501)
...|+.++|..+.+.+..
T Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 899999999998887754
No 22
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.5e-06 Score=56.36 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010790 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (501)
Q Consensus 139 ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd 171 (501)
|||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 23
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=2.8e-06 Score=55.09 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL 58 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~ 58 (501)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999983
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.17 E-value=0.0015 Score=72.30 Aligned_cols=162 Identities=14% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.+..+-..+.+.|+.++|+..|+++... .| +...+..+..++...+ +.++|...++.+......+.. .
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g--------~~~eA~~~~~~~~~~~P~~~~-a 180 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMD--------KELQAISLARTQAQEVPPRGD-M 180 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHhCCCCHH-H
Confidence 4555556666666666666666666543 23 2344455555555555 566666666655443322222 2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
+..+ ..+...|++++|..+++.+ ....-.++...+..+...+.+.|+.++|...|+...... ..+...+..|-..|.
T Consensus 181 ~~~~-~~l~~~g~~~eA~~~~~~~-l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 181 IATC-LSFLNKSRLPEDHDLARAL-LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHH-HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 2122 2355566666666666665 332211223333444455556666666666666655432 123445555555555
Q ss_pred hcCChHH----HHHHHHHHHh
Q 010790 184 ETGRVEK----VYQYLQKLRS 200 (501)
Q Consensus 184 ~~g~~~~----a~~ll~~M~~ 200 (501)
+.|+.++ |...|++...
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHh
Confidence 5555553 4555555443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.16 E-value=0.0008 Score=74.56 Aligned_cols=162 Identities=9% Similarity=-0.037 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 26 ~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
+..+...+...|++++|+..|+++... .|+ ...+..+-..+...+ +.++|...|++..... +.+...+
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g--------~~~~Ai~~l~~Al~l~-P~~~~a~ 147 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK--------QYATVADLAEQAWLAF-SGNSQIF 147 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCcHHHH
Confidence 334445555678888888888777654 232 334444444555566 7888888888776631 2245667
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~ 184 (501)
..+...+...|+.++|...+..+ ... .|+.......+..+...|+.++|..+++.+....-.++...+..+...+.+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~-~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQ-AQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHH-HHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 77788888888888888888777 332 133322222233467788888888888877665333344455555677778
Q ss_pred cCChHHHHHHHHHHHhC
Q 010790 185 TGRVEKVYQYLQKLRST 201 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~~~ 201 (501)
.|+.++|...|++....
T Consensus 225 ~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 225 VGKYQEAIQTGESALAR 241 (656)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 88888888888887754
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.13 E-value=4.6e-05 Score=75.17 Aligned_cols=177 Identities=14% Similarity=0.057 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC-CCCCCHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-NVIPNEA 102 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~-g~~pd~~ 102 (501)
..+..++.. ...+++++|..++...-+.. +++..+..++..+...+ ..+++.++++..... ....+..
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~ 147 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG--------DYDEAEELLEKLEELPAAPDSAR 147 (280)
T ss_dssp ------------------------------------------H-HHHTT---------HHHHHHHHHHHHH-T---T-HH
T ss_pred ccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh--------HHHHHHHHHHHHHhccCCCCCHH
Confidence 356666666 67788888888777654433 44556666777666666 777888888876643 2345677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
.|..+...+.+.|+.++|++.+++..+. .|+ ....+.++..+...|+.+++.+++....... ..|...|..+..+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 7777888888888888888888877322 354 5667777777878888888777777765543 3344567778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHh
Q 010790 182 SAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 217 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~~~~~~p~-~~t~~~i~~~f 217 (501)
|...|+.++|+.+|++.... .|+ +.+...+....
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHH
T ss_pred hccccccccccccccccccc--ccccccccccccccc
Confidence 88888888888888876653 443 33334444444
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=3.8e-06 Score=54.30 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010790 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (501)
Q Consensus 139 ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p 170 (501)
|||.+|.+|++.|+++.|+++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.12 E-value=1.7e-05 Score=85.62 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (501)
Q Consensus 169 ~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i 213 (501)
.|+..+|.+++.+-..+|+.+.|..++.+|++.|+...+.-|--+
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 478899999999999999999999999999999999988755333
No 29
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=6.3e-06 Score=53.25 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRL 56 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p 56 (501)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999999999999999987
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.06 E-value=4.8e-05 Score=75.00 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.|..+-..+-..++.+.|+..|+++...+.. ++..+..++.. ...+ ++++|.+++...-+.. ++...+
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~--------~~~~A~~~~~~~~~~~--~~~~~l 113 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG--------DPEEALKLAEKAYERD--GDPRYL 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccc-cccc--------cccccccccccccccc--cccchh
Confidence 4444444555667777777777777765432 34455566555 3333 5777777766654432 455566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~~ 183 (501)
..++..+.+.++++++..++++........++...|..+-..+.+.|+.++|.++|+...+. .| |....+.++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 67777777777787777777776222233456666777777777777778887777777654 34 3566777777777
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 010790 184 ETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~ 202 (501)
..|+.+++.+++.......
T Consensus 192 ~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-
T ss_pred HCCChHHHHHHHHHHHHHC
Confidence 7777777777777665553
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.05 E-value=0.0019 Score=71.17 Aligned_cols=161 Identities=6% Similarity=-0.109 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.|+.+-..+...|++++|+..|++..+. .|+ ..+|..+-..+...+ ++++|...|++..+.. +-+..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~~~-p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELG--------DPDKAEEDFDKALKLN-SEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCCHHH
Confidence 3444445555566666666666665543 222 234444444444444 5666666666655432 123455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
|..+...+...|++++|...|++. ... .| +...+..+-..|.+.|+.++|...|++..... .-+...|+.+-..+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~ka-l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKS-IDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 666666666666666666666665 222 23 23444555555666666666666666655431 12345566666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010790 183 AETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~ 200 (501)
...|++++|...|++...
T Consensus 478 ~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 666666666666666543
No 32
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=8.5e-06 Score=51.38 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 139 TYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 139 ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 55555555555555555555555555544
No 33
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=9.5e-05 Score=61.13 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNL-RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv-~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~ 105 (501)
...|..|...+++.....+|..+++.|+ .|+..+|+.+|....+...+...-...+-..+.+|..|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 5567778888999999999999999999 999999999999777766666555557778999999999999999999999
Q ss_pred HHHHHHHh
Q 010790 106 SVARLAAS 113 (501)
Q Consensus 106 ~li~~~~~ 113 (501)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988754
No 34
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00019 Score=74.04 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=99.1
Q ss_pred HHHHHH---hCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHHH
Q 010790 45 LYESAH---SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN--NVIPNEASVTSVARLAASKNDGDY 119 (501)
Q Consensus 45 lf~~m~---~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~--g~~pd~~t~~~li~~~~~~g~~~~ 119 (501)
++..|. .++.+.+.+....+++.|.... .++++..++-..... ....-..|..++|+.|...|..+.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~--------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~ 121 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD--------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDE 121 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh--------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHH
Confidence 555554 3456667778888888777766 788888877777654 222233455688999999998899
Q ss_pred HHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010790 120 AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (501)
Q Consensus 120 A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~ 185 (501)
|+++++.= ...|+-||.+|||.||+.+.+.|++..|.+|..+|..++...+..|+.--+.+|.+-
T Consensus 122 ~l~~L~n~-~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 122 LLELLKNR-LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhCh-hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888887 788888999999999999999999988888888888887776777766666665554
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.88 E-value=0.002 Score=70.93 Aligned_cols=166 Identities=8% Similarity=-0.055 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
..|..+-..+...|++++|+..|+++.+.. +-+...|..+-..+...+ ++++|...|++..... +.+...
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKG--------EFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcC-ccCHHH
Confidence 467777777888889999999888877653 224566666666666666 7888888888877643 235666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCH-HHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS-----LEQ-QEIAA 177 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~-----pd~-~t~~~ 177 (501)
+..+...+.+.|+.++|+..|++. ... .+-+...|+.+-..|...|++++|.+.|+......-. .+. ..++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~a-l~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRC-KKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 777778888888888888888887 332 2223567777778888888888888888886654211 111 12222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
.+..+...|++++|..++.+....
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc
Confidence 233344468888888888876543
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=97.81 E-value=0.0031 Score=68.57 Aligned_cols=160 Identities=9% Similarity=-0.032 Sum_probs=111.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 010790 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (501)
Q Consensus 35 k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~ 114 (501)
..++.++|...++++.+.. +-+...+..+-.++...+ ++++|...|++..+.. +-+...+..+-..+...
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS--------EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMA 385 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 4567889999998887653 224555655544566666 7889999999887753 22455677788888899
Q ss_pred CCHHHHHHHHHHhHhhcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010790 115 NDGDYAFVLIKRMNNEFNVVPRLR-TYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~-ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~~~~g~~~~a~ 192 (501)
|++++|...+++. .+ +.|+.. .+..++..+...|+.++|...+++..... .| +...+..+-..+...|+.++|.
T Consensus 386 G~~~eAi~~~~~A-l~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 386 GQLEEALQTINEC-LK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred CCHHHHHHHHHHH-Hh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999888 33 235532 23344445667888999999988876553 23 3445666777788899999999
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 010790 193 QYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 193 ~ll~~M~~~~~~p~~~t~ 210 (501)
..+.++... .|+..+.
T Consensus 462 ~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 462 KLTKEISTQ--EITGLIA 477 (553)
T ss_pred HHHHHhhhc--cchhHHH
Confidence 998886544 4444443
No 37
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.6e-05 Score=49.08 Aligned_cols=30 Identities=7% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL 54 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv 54 (501)
+||++|++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999885
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.78 E-value=0.0033 Score=72.18 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010790 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (501)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~ 113 (501)
.+.|+.++|...|+++... +|+...+..+..++...| ++++|...|+...... +.+...+..+.....+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G--------d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG--------NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 3556666666666654332 222222333333334444 4555555555544432 1111111122222223
Q ss_pred CCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010790 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193 (501)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ 193 (501)
.|++++|...+++. . .+.|+...|..+-..+.+.|+.++|...|++..... +-+...++.|-..+...|+.++|+.
T Consensus 589 ~Gr~~eAl~~~~~A-L--~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 589 PGQPELALNDLTRS-L--NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCCHHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544 2 122444445555555555555555555555544331 1122334444444555555555555
Q ss_pred HHHHHH
Q 010790 194 YLQKLR 199 (501)
Q Consensus 194 ll~~M~ 199 (501)
+|++..
T Consensus 665 ~l~~AL 670 (987)
T PRK09782 665 MLERAH 670 (987)
T ss_pred HHHHHH
Confidence 554443
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=97.76 E-value=0.0034 Score=68.23 Aligned_cols=160 Identities=9% Similarity=0.015 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.+..+-..+...|++++|...|+++.+.+ +-+...+..+-..+...| +.++|...+++..+....+ ...+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~P~~-~~~~ 409 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAG--------QLEEALQTINECLKLDPTR-AAAG 409 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCCC-hhhH
Confidence 44555555666777777777777766543 122334444444555566 6777777777766643221 1122
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE-QQEIAALLKVS 182 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd-~~t~~~Li~~~ 182 (501)
..++..+...|+.++|...+.+. .... .|+. ..+..+-..|...|+.++|...+.++... .|+ ...++.|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~-l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDEL-RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHH-HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 23344455567777777777766 3321 2333 23444555666777777777777665433 222 33344444455
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010790 183 AETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~ 200 (501)
+..| ++|...++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNS--ERALPTIREFLE 501 (553)
T ss_pred hccH--HHHHHHHHHHHH
Confidence 5555 466666665543
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.75 E-value=0.0066 Score=68.64 Aligned_cols=175 Identities=10% Similarity=-0.034 Sum_probs=128.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC--------
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-------- 97 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p---~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~-------- 97 (501)
+-..|.+.|++++|+.+|+++....-.. .......|..++...+ ++++|.++++.+.....
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g--------~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE--------NYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc--------cHHHHHHHHHHHhhcCCceEeecCC
Confidence 4557788888888888888876533111 1233444444555666 89999999999987521
Q ss_pred ---CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010790 98 ---IPN---EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (501)
Q Consensus 98 ---~pd---~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd 171 (501)
.|| ...+..+...+...|+.++|+++++++ ... .+-+...+..+...+...|+.++|++++++.... .|+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a-l~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd 425 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL-AYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPR 425 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC
Confidence 134 235567788899999999999999998 332 3345677888888999999999999999988775 354
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 172 -QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 172 -~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
...+-.+...+.+.|++++|..+++++.+. .|+......+....
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 556677777888999999999999999874 77777665554444
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.71 E-value=0.0076 Score=69.29 Aligned_cols=166 Identities=8% Similarity=-0.051 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.|..+-..+.. +++.+|+..|.+..... |+....-.+...+...+ ++++|...|+.+... .|+...+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G--------r~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE--------DYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC--------CHHHHHHHHHHHhcc--CCCcHHH
Confidence 44444444444 56666777666655332 44332111122333444 677777777665432 3333445
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
..+..++.+.|+.++|...+++. .... |+. ..+..+.....+.|+.++|...|++.... .|+...|..+-..+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qA-L~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQA-EQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 55556666677777777777666 3332 332 22222222333447777777777666543 355666666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 184 ETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
+.|+.++|...|++.... .|+...+
T Consensus 621 ~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 621 QRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 777777777777665544 4544433
No 42
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00074 Score=69.74 Aligned_cols=132 Identities=9% Similarity=-0.031 Sum_probs=112.0
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 88 VFDQMLS---NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 88 lf~~M~~---~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~--gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
++..|.. .+..-+......++..+....+++++..++-.. +.. ...-...|..++|..|.+.|..+.|..+...
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~-R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKF-RHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHH-HcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 5566554 455567888999999999999999999999888 544 2222335667999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 163 MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 163 M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
=...|+-||..|+|.||+.+.+.|++..|.++...|.......++.|....+..|...
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999988777777544
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.63 E-value=0.014 Score=55.76 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=116.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC
Q 010790 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (501)
Q Consensus 22 p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~---~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~ 98 (501)
....+-.+...+.+.|+.++|...|+++....- .+. ..+..+-..+...+ ++++|...|+.+.+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~--------~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSG--------DYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcC
Confidence 334677777789999999999999999876431 122 23333444555556 899999999999875432
Q ss_pred CCHH--HHHHHHHHHHhC--------CCHHHHHHHHHHhHhhcCCCCChh-hHH-----------------HHHHHHHHc
Q 010790 99 PNEA--SVTSVARLAASK--------NDGDYAFVLIKRMNNEFNVVPRLR-TYD-----------------PALFCFCEN 150 (501)
Q Consensus 99 pd~~--t~~~li~~~~~~--------g~~~~A~~l~~~M~~~~gi~P~~~-ty~-----------------~lI~~~~~~ 150 (501)
.... ++..+-..+... |+.++|.+.|+.+ ... .|+.. .+. .+-..|.+.
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2221 333444444443 7889999999998 332 25432 221 233457788
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 151 LEAEKAYEVEEHMGLMG--LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 151 g~~~~A~~lf~~M~~~g--v~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
|+.++|...|+...... -......+..+..++.+.|+.++|..+++.+...
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999987652 1223568899999999999999999999988754
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.54 E-value=0.016 Score=60.33 Aligned_cols=179 Identities=9% Similarity=-0.070 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL-------HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~-------~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g 96 (501)
..+..+...|.+.|++++|.+++..+.+.+..++. .+|..++..-.... ..+...++++.+.+.
T Consensus 188 ~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--------~~~~l~~~w~~lp~~- 258 (398)
T PRK10747 188 EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--------GSEGLKRWWKNQSRK- 258 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHhCCHH-
Confidence 46788888899999999999999999887754322 12333333222222 244455555554322
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 010790 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEI 175 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~ 175 (501)
.+.+......+.+++...|+.++|..++++. .+. .|+. --.++.+.+..++.+++.+..+...++ .| |...+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~-l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~ 331 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDG-LKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLW 331 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHH
Confidence 2357778889999999999999999999888 442 3444 122445555679999999999988765 34 45567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 176 ~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
.++-..|.+.+++++|.+.|+...+. .|+..++..+...+...
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRL 374 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc
Confidence 78888999999999999999998865 68888876666666443
No 45
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0016 Score=54.02 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCC-CCChhhHHHHHHHHHHcC----C----HHHHHHHHHHHHHCCCCCCHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTYDPALFCFCENL----E----AEKAYEVEEHMGLMGLSLEQQEI 175 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty~~lI~~~~~~g----~----~~~A~~lf~~M~~~gv~pd~~t~ 175 (501)
...|.-+...++......+|..+ ++.|+ .|++.+|+.+|.+.++.. + +-..+.+|+.|...+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 45566666678888888888888 78888 788888888888877643 2 33456778888888888888888
Q ss_pred HHHHHHHHh
Q 010790 176 AALLKVSAE 184 (501)
Q Consensus 176 ~~Li~~~~~ 184 (501)
+.+|..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.48 E-value=0.018 Score=59.92 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 171 d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
+.....++...+...|+.++|..++.+..+. .|++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~ 296 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE 296 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 4445555666677777777777777776553 4444
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0046 Score=60.37 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~ 106 (501)
+.|=.+|.+.|.+.+|.+.|.....+--- +-||-.|-..|.+.. .++.|+.+|.+-.+. ++-|+.-..-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~rid--------QP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRID--------QPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhc--------cHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 77888999999999999999987766443 456766666898888 899999999987664 3334444567
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG 186 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g 186 (501)
+.+.+-..++.++|.++++...+...+ ++.....+-.+|.-.++.+.|+..|.++...|+. +...|+.+--+|.-.+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 888899999999999999998333322 6666667777888899999999999999999987 6778888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCH
Q 010790 187 RVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 187 ~~~~a~~ll~~M~~~~~~p~~ 207 (501)
.+|-++.-|.+-......|+.
T Consensus 373 Q~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred chhhhHHHHHHHHhhccCcch
Confidence 999999988888777666655
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.39 E-value=0.025 Score=63.79 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=132.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCC-----CCCCHHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-----VIPNEAS 103 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g-----~~pd~~t 103 (501)
.|-++.+.|+..++++.|+.|...|.+.-.+.=-++-.+|...+ .+++|..+|..+.... ..++...
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~--------~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR--------LPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhhccccccCCCcchHH
Confidence 45567888999999999999999997656677777888888777 8999999999986632 2334555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC---------------Chh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP---------------RLR-TYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P---------------~~~-ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
...|.-+|...+++++|..+++.+ ... .| |-. .+..++..+.-.|++.+|++.++++....
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~-~~~--~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNY-SEQ--TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHH-Hhc--CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 678999999999999999999999 652 23 112 23345667888999999999999996652
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 168 LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKI 212 (501)
Q Consensus 168 v~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~ 212 (501)
+-|...+..+-+.+...|.+.+|.++++..... .|+......
T Consensus 447 -P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 447 -PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 347788899999999999999999999655433 666554433
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.39 E-value=0.017 Score=68.31 Aligned_cols=160 Identities=9% Similarity=0.023 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSV 107 (501)
Q Consensus 28 ~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~l 107 (501)
.+...+...|+.++|+.+++. .+.+...+..|-..+...+ +.++|++.|+...+.. +-|...+..+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g--------~~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG--------DYAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456678899999999999872 2334445555555677777 8999999999988753 3367889999
Q ss_pred HHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHH
Q 010790 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGL--SL---EQQEIAALLKV 181 (501)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv--~p---d~~t~~~Li~~ 181 (501)
+..|...|+.++|++.++.. .. ..|+ ..++..+-..+...|+.++|.++|+.+....- .| +...+..+...
T Consensus 644 a~~~~~~g~~~eA~~~l~~l-l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKL-PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHH-hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999988 43 2344 34556667788899999999999999876532 22 22456666778
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCC
Q 010790 182 SAETGRVEKVYQYLQKLR-STVRC 204 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~-~~~~~ 204 (501)
+.+.|+.++|+..|+... ..++.
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCC
Confidence 889999999999998764 34454
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.015 Score=56.91 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH----HHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE----ASV 104 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~----~t~ 104 (501)
|-.-|.++|-++.|..+|..+.+.+. .-...-..||..|-... .+++|+++=+++.+.+-.+.. .-|
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tr--------eW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATR--------EWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 44456666777777777777666553 11233444556666665 677777777776665544432 234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL-FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI-~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
.-|...+....+.+.|+.++... -.. .|+.+--+.++ ..+...|+.++|.+.++...+.+..--..+...|..+|.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kA-lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKA-LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH-Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 45555555566777777777766 222 24444444443 346678999999999999888865545567888899999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH
Q 010790 184 ETGRVEKVYQYLQKLRSTVRCVNEE 208 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~~~p~~~ 208 (501)
+-|+.++....+.++.+....++..
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccHH
Confidence 9999999999999887765555443
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.36 E-value=0.02 Score=59.76 Aligned_cols=183 Identities=14% Similarity=0.031 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH---HhCCCCCCCChhhHHHHHHHHHHHHhCCC--
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALL-YLC---SDSATDPSSKDSALRHGFRVFDQMLSNNV-- 97 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL-~~c---~~~~~~~~~k~~~~~~a~~lf~~M~~~g~-- 97 (501)
..+..+...|.+.|++++|.+++..+.+.++. +...+..+- .+. ...+ ..+.+.+.+..+...-.
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~--------~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA--------MADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH--------HHhcCHHHHHHHHHHCCHH
Confidence 35667777888888888888888888877653 222232111 111 1111 11222334444433221
Q ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHH-HHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCH-
Q 010790 98 -IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD-PALFC--FCENLEAEKAYEVEEHMGLMGLSLEQ- 172 (501)
Q Consensus 98 -~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~lI~~--~~~~g~~~~A~~lf~~M~~~gv~pd~- 172 (501)
+.+...+..+...+...|+.++|.+++++. .+. .||...-. .++.. ....++.+.+.+.++...+. .|+.
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~-l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~ 333 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDG-LKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKP 333 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHH-Hhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCCh
Confidence 137888899999999999999999999998 332 25654310 13333 34457888888888877654 3443
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 173 --QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 173 --~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
....+|-..+.+.|++++|.+.|+.-......|+...+..+...+...
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 456688888999999999999999766666689998877776666444
No 52
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0016 Score=60.38 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010790 97 VIPNEASVTSVARLAASK-----NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~~-----g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd 171 (501)
-..|..+|..+|..|.+. |..+-....+..| .+.|+.-|+.+|+.||+.+=+ |.+- |
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p- 104 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPK-GKFV---------------P- 104 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCC-CCcc---------------c-
Confidence 345666777777776653 5555566666666 666776777777777666533 1111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 010790 172 QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 219 (501)
Q Consensus 172 ~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~ 219 (501)
...+.++.--| ..+.+-|+.+|+.|..+|+.||.+|...++..|..
T Consensus 105 ~n~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 105 RNFFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred ccHHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 11111121112 22356788888888888888888888888888843
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.34 E-value=0.023 Score=64.12 Aligned_cols=164 Identities=11% Similarity=0.029 Sum_probs=82.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 22 p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
|+..|...|- ..+.|+.+.|+..|.+..+..-.-....+ .++.++...+ ..++|+.++++... -...+.
T Consensus 34 ~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G--------~~~~A~~~~eka~~-p~n~~~ 102 (822)
T PRK14574 34 ADTQYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG--------RDQEVIDVYERYQS-SMNISS 102 (822)
T ss_pred hhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC--------CcHHHHHHHHHhcc-CCCCCH
Confidence 3344444443 34566777777777766544321101122 4455444545 56666666666541 111122
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
....++...|...|++++|.++|+++ .+. .|+ ...+..++..|...++.++|++.++.+... .|+...+-.++.
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~ka-L~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~lay 177 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSS-LKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSY 177 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-Hhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHH
Confidence 23333344566666666666666666 221 122 334445555666666666666666666543 344444433322
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 010790 181 VSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 181 ~~~~~g~~~~a~~ll~~M~~~ 201 (501)
.+...+...+|++.+++|.+.
T Consensus 178 L~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHh
Confidence 232344444466666666555
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.31 E-value=0.039 Score=62.41 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
...-.+......|+.++|++++.+..... +.+...+..+-.++...+ ++++|.++|++..... +.+...+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g--------~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK--------QWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCCHHHH
Confidence 44555666778899999999999987622 334556777777777777 8999999999977642 2346667
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~ 184 (501)
..+...+...|+.++|...+++. ... .|+...+..+-..+...|+.++|...++++....-. +...+..+...+..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~-l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQL-VSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 78889999999999999999999 433 354433778888889999999999999999876322 45566778888888
Q ss_pred cCChHHHHHHHHHHH
Q 010790 185 TGRVEKVYQYLQKLR 199 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~ 199 (501)
.|..++|++.++...
T Consensus 163 ~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 163 NRLSAPALGAIDDAN 177 (765)
T ss_pred CCChHHHHHHHHhCC
Confidence 999999998887544
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.028 Score=57.09 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
|....+-|...|-+.|+-..|++.+-+- - +-++-+..|..=|-.-|....-.++|...|+... =+.|+.+-|..||
T Consensus 591 dp~ilskl~dlydqegdksqafq~~yds-y-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmi 666 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDS-Y-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMI 666 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhc-c-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHH
Confidence 4555566666666666666666654433 1 1232344444444444555555677777776643 3689999999999
Q ss_pred HHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcC
Q 010790 180 KVSAE-TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV 222 (501)
Q Consensus 180 ~~~~~-~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~ 222 (501)
..|.+ .|++.+|+++++..... +.-+..-...+.+.+..++.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88775 89999999999987544 34445555677777766543
No 56
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.21 E-value=0.056 Score=64.13 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 26 ~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
+..+...+...|+.++|++.|++..+.. | +...+..+-..+...+ +.++|..+|++....... +...+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G--------~~~~A~~~l~~al~~~P~-~~~~~ 532 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG--------QRSQADALMRRLAQQKPN-DPEQV 532 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCC-CHHHH
Confidence 3445566778899999999998887643 3 3444555555677777 788888888887664221 22223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcC---------------------------------------CCCChhhHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFN---------------------------------------VVPRLRTYDPALF 145 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g---------------------------------------i~P~~~ty~~lI~ 145 (501)
-.+...+...|+.++|...++.+ .... .+++...+..+-.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l-~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTL-PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhC-CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 23333344455555555555443 2111 1123345556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 146 CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 146 ~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.|.+.|+.++|.++|+...... +.+...+..|...|...|+.++|...|+....
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7778888888888888887653 22567888888888888888888888887654
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.18 E-value=0.047 Score=56.97 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcC
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFN 132 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (501)
+.+.|.+.++.+.+... -+......+...|.+.|++++|.+++... .+.+
T Consensus 168 ~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l-~k~~ 217 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNM-AKAG 217 (409)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHcC
Confidence 45555555555544421 13334445555555555555555555555 4443
No 58
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.0065 Score=56.45 Aligned_cols=109 Identities=9% Similarity=0.075 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC
Q 010790 56 LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (501)
Q Consensus 56 p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (501)
-+-.+|..+|..+.+.. ..+.|.++-...-+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|+.|
T Consensus 45 k~K~~F~~~V~~f~~~~---~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRD---VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcC---CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH--------
Confidence 34577888888776553 23455788888889999999999999999999998775 3221 12222222
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010790 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (501)
Q Consensus 136 ~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~ 187 (501)
-.-| -.+-+-|.+|++.|...|+.||..++..|++.+.+.+.
T Consensus 112 --------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 --------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0001 22345566666666666666666666666666655543
No 59
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.0066 Score=59.93 Aligned_cols=127 Identities=12% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~g-v~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.|-.++...-|.+.+++|..+|.+.++.+ +....+...++|..+... +.+.|..||+...+. +..+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~---------d~~~A~~Ife~glk~-f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK---------DPKRARKIFERGLKK-FPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----------HHHHHHHHHHHHHH-HTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHH-CCCCHHH
Confidence 34555555555555666666666655433 233344444444332222 244456666555443 3334455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMG 164 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~lI~~~~~~g~~~~A~~lf~~M~ 164 (501)
|...|..+...++.+.|+.+|+.. ... + |.. ..|...|.-=.+.|+++.+..|.+.+.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~-i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERA-ISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-CCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHH-HHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555666666665555 221 2 222 244444444444555555555444443
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.11 E-value=0.057 Score=54.80 Aligned_cols=161 Identities=14% Similarity=-0.040 Sum_probs=106.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSV 107 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd-~~t~~~l 107 (501)
.-..+...|++++|..++++..+.. +-+...++. ...+...+. ..+....+.+.++. .....|+ ......+
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~----~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~ 120 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGD----FSGMRDHVARVLPL--WAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcc----cccCchhHHHHHhc--cCcCCCCcHHHHHHH
Confidence 3445667899999999999987653 233434442 111111110 01134455555544 2223344 3344556
Q ss_pred HHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 010790 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGL-SLEQ--QEIAALLKVSA 183 (501)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv-~pd~--~t~~~Li~~~~ 183 (501)
...+...|++++|...+++. ... .|+ ...+..+-..|...|++++|...++......- .|+. ..|..+...+.
T Consensus 121 a~~~~~~G~~~~A~~~~~~a-l~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRA-LEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHH-Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 67888999999999999998 443 344 45667777788999999999999988765421 2333 34667888899
Q ss_pred hcCChHHHHHHHHHHHh
Q 010790 184 ETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~ 200 (501)
..|+.++|..+|++...
T Consensus 198 ~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 198 ERGDYEAALAIYDTHIA 214 (355)
T ss_pred HCCCHHHHHHHHHHHhc
Confidence 99999999999999854
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.10 E-value=0.25 Score=49.11 Aligned_cols=162 Identities=11% Similarity=-0.046 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC-CHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p-d~~t 103 (501)
.|..+-..|.+.|+.++|...|++..+.. +-+...|+.+-..+...+ ++++|.+.|+...+. .| +..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l--~P~~~~a 134 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAG--------NFDAAYEAFDSVLEL--DPTYNYA 134 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHh--CCCCHHH
Confidence 35555556778888888888888877643 224567777766777777 788888888887763 33 3566
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------------
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE------------ 171 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd------------ 171 (501)
|..+...+...|+.++|.+.|+.. .. ..|+..........+...++.++|...|+...... .|+
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~a-l~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~lg 210 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAF-YQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWNIVEFYLG 210 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHHHHHHHcc
Confidence 777777778888888888888877 33 23544322222222334566777777775433211 111
Q ss_pred -------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 172 -------------------------QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 172 -------------------------~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
...|..|-..+.+.|+.++|...|++-...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 124555555666777777777777776644
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.09 E-value=0.0045 Score=61.31 Aligned_cols=153 Identities=11% Similarity=0.066 Sum_probs=89.8
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 010790 28 INLQSCTKS-KDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (501)
Q Consensus 28 ~lI~~~~k~-g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~ 105 (501)
.++..|.+. .+-+.++.-+++.......++..++..+.. .+...+ .+++|++++..- -+.....
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~--------~~~~AL~~l~~~------~~lE~~a 135 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG--------DYEEALKLLHKG------GSLELLA 135 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC--------HHHHHHCCCTTT------TCHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC--------CHHHHHHHHHcc------CcccHHH
Confidence 444555554 444455554444333333322233333322 333344 788888776532 4556667
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~----~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
..+..|.+.++++.|.+.++.| ++. ..|. +-.-+..++.. ...+.+|+.+|++|..+ ..++..+.|.+..+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~-~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNM-QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 7788888888888888888888 543 2343 33334444332 23578888888887654 45677788888888
Q ss_pred HHhcCChHHHHHHHHHHH
Q 010790 182 SAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~ 199 (501)
+...|++++|.+++.+-.
T Consensus 211 ~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHCT-HHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 888888888888887754
No 63
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.05 E-value=0.026 Score=58.09 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhh
Q 010790 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT 139 (501)
Q Consensus 60 ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (501)
-..+|+..+...+ +++.|..+|+++.+.. |+.. ..|++.+...++-.+|.+++.+..... +-+...
T Consensus 171 Lv~~Ll~~l~~t~--------~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~L 236 (395)
T PF09295_consen 171 LVDTLLKYLSLTQ--------RYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN--PQDSEL 236 (395)
T ss_pred HHHHHHHHHhhcc--------cHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 3444555666565 7999999999998865 6644 468888888999999999998883322 124344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 140 y~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~-~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
...-...+.+.++.+.|.++.+++... .|+. .+|..|..+|.+.|+++.|+..++-|.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 444445577899999999999998865 5655 499999999999999999999988774
No 64
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.05 E-value=0.027 Score=64.37 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHHHhCC-------------------------CCC
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHS-QNLRLS---LHHFNALLYLCSDSA-------------------------TDP 75 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~-~gv~p~---~~ty~~LL~~c~~~~-------------------------~~~ 75 (501)
.|-.-|.-..+.++.++|.++++++.. -+.+-. .-.|.++|++-...| ..-
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 677778888888888888888888652 222211 134555555333333 001
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC---hhhHHHHHHHHHHcCC
Q 010790 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLE 152 (501)
Q Consensus 76 ~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~lI~~~~~~g~ 152 (501)
|.+....++|-++|+.|.+..- -....|...+..+.+..+-++|..++.+. .+ +-|. .....-.+..-.++||
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rA-L~--~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRA-LK--SLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHH-Hh--hcchhhhHHHHHHHHHHHhhcCC
Confidence 1122244555555555554321 23334555555555555555555555444 11 1233 1111222233346777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 153 AEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 153 ~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
.+.++.+|+.....- +--...|+.+|+.=.+.|+.+.+..+|++....++.|-.
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 777777777766542 224568999999999999999999999999998888765
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.00 E-value=0.2 Score=47.04 Aligned_cols=173 Identities=11% Similarity=0.001 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
..-.|=-+|.+.|+...|..-+++..+.. +-+.-+|.++-..|.+.| ..+.|.+-|+.-.+.... |--+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~G--------e~~~A~e~YrkAlsl~p~-~GdVL 106 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLG--------ENDLADESYRKALSLAPN-NGDVL 106 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------ChhhHHHHHHHHHhcCCC-ccchh
Confidence 44556668999999999999999988764 223557777777888888 899999999987664221 34456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEF-NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
|..=..+|..|++++|...|++. ... ...--..||..+--+..+.|+.+.|.+.|..-....-. ...+.-.|.....
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~A-l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~ 184 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHY 184 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHH-HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHH
Confidence 66777789999999999999988 443 11112367777777778999999999999998776422 3346778888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 184 ETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
+.|+.-.|...+++....+. ++..+.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL 210 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESL 210 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHH
Confidence 99999999999999887766 665544
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.97 E-value=0.015 Score=57.64 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE---- 184 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~---- 184 (501)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|...+ +..+..-|..+++.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhC
Confidence 3444456666666555432 244455556666666666666666666665432 22333334333332
Q ss_pred cCChHHHHHHHHHHHh
Q 010790 185 TGRVEKVYQYLQKLRS 200 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~~ 200 (501)
.....+|+.+|++|.+
T Consensus 180 ~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD 195 (290)
T ss_dssp TTCCCHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHh
Confidence 2245666666666544
No 67
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.88 E-value=0.023 Score=58.49 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.-.+|+..+...++++.|+.+|+++.+.. |+.. ..|...+...+ .-.+|.+++.+.... .+-|....
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~--------~E~~AI~ll~~aL~~-~p~d~~LL 237 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMN--------EEVEAIRLLNEALKE-NPQDSELL 237 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcC--------cHHHHHHHHHHHHHh-CCCCHHHH
Confidence 33667777788899999999999999876 5432 23445555555 567888888887754 23366677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
..-.+.+.+.++.+.|+.+.++++ .+.|+. .+|..|..+|.+.|+++.|....+.|+..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 777788999999999999999993 345776 59999999999999999999999988743
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.82 E-value=0.18 Score=50.83 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=116.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh
Q 010790 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-------LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (501)
Q Consensus 22 p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~-------~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~ 94 (501)
+....+.....|.+.|+..+...+...|.+.|+--+ ..+|+.+|.-+...+ ..+.-..-++....
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~--------~~~gL~~~W~~~pr 257 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN--------GSEGLKTWWKNQPR 257 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc--------cchHHHHHHHhccH
Confidence 445789999999999999999999999999986433 346777777444433 12222334443322
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHH
Q 010790 95 NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG-LMGLSLEQQ 173 (501)
Q Consensus 95 ~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~-~~gv~pd~~ 173 (501)
..+-+...-.+++.-+.++|+-++|.++..+- -+.+..|.+.++ -.+.+-++.+.=.+..++-. ..+..| -
T Consensus 258 -~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 258 -KLRNDPELVVAYAERLIRLGDHDEAQEIIEDA-LKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred -HhhcChhHHHHHHHHHHHcCChHHHHHHHHHH-HHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 12233445557778888888888888888887 566665553322 23345566555554444433 334444 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
.+.+|-..|.+++.+.+|.+.|+. .....|+.+++..+...|...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQL 374 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHc
Confidence 666777777777777777777773 344567777777777777544
No 69
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.82 E-value=0.033 Score=58.87 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHH
Q 010790 78 KDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEK 155 (501)
Q Consensus 78 k~~~~~~a~~lf~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~ 155 (501)
..|.++-|++.|++-.+. .|+ ...|+.|..++-..|+..+|...+++. ... -|+ .-+.+.|=..|...|.++.
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka-L~l--~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA-LRL--CPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH-HHh--CCccHHHHHHHHHHHHHhccchH
Confidence 344788888888887663 444 457888888888889999999888887 332 233 3567778888888888888
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 156 AYEVEEHMGLMGLSLEQ-QEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 156 A~~lf~~M~~~gv~pd~-~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
|..+|..-.+- .|+- ...|.|-..|-+.|+.++|+..+++-.
T Consensus 373 A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 373 ATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 88888776543 4433 467888888888899999888887754
No 70
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.041 Score=58.59 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=123.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
+++|-++=+.|+-.++.+.|++.|.+...-. | ..++|+.+=+=..... .+|.|..-|..- +..|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~e--------e~d~a~~~fr~A----l~~~~ 486 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATE--------EFDKAMKSFRKA----LGVDP 486 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhH--------HHHhHHHHHHhh----hcCCc
Confidence 3589999999999999999999999877533 3 3567766544333333 688899888876 34566
Q ss_pred HHHHH---HHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 102 ASVTS---VARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 102 ~t~~~---li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
..||+ |--.|.+.++.+.|+-.|... . .+-|. .+.-..+-..+-+.|+.|+|+.+|++....+-. |.-+---
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKA-V--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhh-h--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 66666 455788999999999999887 3 34454 455556666677899999999999988765432 3333334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKI 212 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~ 212 (501)
.+..+...++.++|+..|+++++- .|++.+.-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~ 595 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFA 595 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHH
Confidence 455566688899999999999765 788877633
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.80 E-value=0.081 Score=56.17 Aligned_cols=167 Identities=13% Similarity=0.011 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C--CC-CCCHHH-HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh---
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHS---Q--NL-RLSLHH-FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS--- 94 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~---~--gv-~p~~~t-y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~--- 94 (501)
+++.|=..|.+.|++++|...+++..+ . |. .|...+ ++.+...|...+ .+++|..++..-.+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~--------~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN--------EYEEAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHHH
Confidence 778888899999999999999888652 2 22 223333 333334555555 68888888876544
Q ss_pred CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc---C--CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHH-
Q 010790 95 NNVIPN----EASVTSVARLAASKNDGDYAFVLIKRMNNEF---N--VVPR-LRTYDPALFCFCENLEAEKAYEVEEHM- 163 (501)
Q Consensus 95 ~g~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~---g--i~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M- 163 (501)
.-+.++ ..+++.|-..|-..|+.++|.++|++..... + ..+. -..++.|=..|.+.+..+.|..+|.+-
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 112232 3579999999999999999999999763221 1 1122 356677788899999999999999874
Q ss_pred ---HHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 164 ---GLMGL-SL-EQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 164 ---~~~gv-~p-d~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
+..|. .| ...+|..|...|.+.|+.++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33332 22 34689999999999999999999988764
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.79 E-value=0.088 Score=55.90 Aligned_cols=172 Identities=14% Similarity=0.105 Sum_probs=118.4
Q ss_pred CCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHH----HHHhCCCCCCCChhhHHHHHH
Q 010790 19 NPNPE--TNFLINLQSCTKSKDLTTAISLYESAHSQ-----NLRLSLHHFNALLY----LCSDSATDPSSKDSALRHGFR 87 (501)
Q Consensus 19 ~~~p~--~~~n~lI~~~~k~g~~~~A~~lf~~m~~~-----gv~p~~~ty~~LL~----~c~~~~~~~~~k~~~~~~a~~ 87 (501)
...|. .+...+-..|...|+++.|..+|....+. | .+.-...+++. .+...+ .+++|..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G--~~hl~va~~l~~~a~~y~~~~--------k~~eAv~ 262 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG--LKHLVVASMLNILALVYRSLG--------KYDEAVN 262 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC--ccCHHHHHHHHHHHHHHHHhc--------cHHHHHH
Confidence 34444 47777999999999999999999987654 3 12222333332 444455 7888999
Q ss_pred HHHHHHh-----CCC-CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhHh--h--cC-CCCCh-hhHHHHHHHHHHcCCHH
Q 010790 88 VFDQMLS-----NNV-IP-NEASVTSVARLAASKNDGDYAFVLIKRMNN--E--FN-VVPRL-RTYDPALFCFCENLEAE 154 (501)
Q Consensus 88 lf~~M~~-----~g~-~p-d~~t~~~li~~~~~~g~~~~A~~l~~~M~~--~--~g-i~P~~-~ty~~lI~~~~~~g~~~ 154 (501)
+|+++.. .|- .| -..|++.|-.+|.+.|++++|...++.... + .+ ..|.+ .-++.+...|+..++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 9988865 121 12 245677777889999999999888876421 1 11 22344 33456667788899999
Q ss_pred HHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 155 KAYEVEEHMGLM---GLSLE----QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 155 ~A~~lf~~M~~~---gv~pd----~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.|..++....+. -+.++ .-+++.|-..|-..|++++|.+++++...
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999998765432 12222 24799999999999999999999988643
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.78 E-value=0.66 Score=46.08 Aligned_cols=149 Identities=10% Similarity=-0.064 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010790 37 KDLTTAISLYESAHSQN-LRLSL--HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (501)
Q Consensus 37 g~~~~A~~lf~~m~~~g-v~p~~--~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~ 113 (501)
+..+.++.-+.++.... ..|+. ..|..+=..+...| ..++|...|++..+... -+...|+.+-..+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--------~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--------LRALARNDFSQALALRP-DMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34566777777777543 33322 22333333555555 78889999988877532 357788999999999
Q ss_pred CCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 114 KNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
.|++++|...|+.. .+ +.|+ ..+|..+-..+...|+.++|.+.|+..... .|+..........+...++.++|.
T Consensus 111 ~g~~~~A~~~~~~A-l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 111 AGNFDAAYEAFDSV-LE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred CCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHH
Confidence 99999999999888 33 3454 466777777788899999999999887764 444332222222334567789999
Q ss_pred HHHHHHH
Q 010790 193 QYLQKLR 199 (501)
Q Consensus 193 ~ll~~M~ 199 (501)
..|.+..
T Consensus 186 ~~l~~~~ 192 (296)
T PRK11189 186 ENLKQRY 192 (296)
T ss_pred HHHHHHH
Confidence 9987654
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.17 Score=49.85 Aligned_cols=235 Identities=11% Similarity=0.039 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
.....|+.-|-+..++++|+++-+++...+- .+|+..|. .|+.-. ..+.-..+++.|..++..-...... ++-
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~----q~~~~eIAqfyCELA-q~~~~~~~~d~A~~~l~kAlqa~~~-cvR 215 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGG----QTYRVEIAQFYCELA-QQALASSDVDRARELLKKALQADKK-CVR 215 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC----ccchhHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhhCcc-cee
Confidence 4667789999999999999999998887665 34444444 221110 0000111688899998887664322 222
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
.--.+=+.+...|+.+.|.+.++.. .+.+-.--..+-..|..+|...|+.++....+..+.+....++ .-..|-+..
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~li 292 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLI 292 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHH
Confidence 2224556788899999999999999 6654333346778899999999999999999888876533222 233333333
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-ccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEEEeee
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF-SGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSV 261 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f-~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~~~~v 261 (501)
....-.+.|-..+.+-... +|+...+..++..- +...-|-..-+...+++.+-+.-..-..+- .-..+...-
T Consensus 293 e~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR-----C~~CGF~a~ 365 (389)
T COG2956 293 ELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR-----CQNCGFTAH 365 (389)
T ss_pred HHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce-----ecccCCcce
Confidence 3333345566665554433 68888777776665 332222222344445444332111000000 001122333
Q ss_pred cCCCCCCCCCCcc
Q 010790 262 DESGKCCSCGDQL 274 (501)
Q Consensus 262 ~~~gkCg~~~~al 274 (501)
..|-.|++|...-
T Consensus 366 ~l~W~CPsC~~W~ 378 (389)
T COG2956 366 TLYWHCPSCRAWE 378 (389)
T ss_pred eeeeeCCCccccc
Confidence 4567899997653
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.77 E-value=0.099 Score=45.94 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH--HHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHH-FNALL--YLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~t-y~~LL--~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
.|..++..+. .++...+...++.+....- -+.+. ...|. ..+...+ ++++|...|+........|+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g--------~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQG--------DYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCHHH
Confidence 5666666664 6777777777777776532 11122 22222 1344444 677788888777776533322
Q ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 102 --ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 102 --~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
...-.|...+...|++++|+..++.. ..... ....+...=+.|.+.|+.++|...|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQI-PDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23334566677777777777777665 43332 223344444566777777777777754
No 76
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.76 E-value=0.019 Score=49.42 Aligned_cols=98 Identities=9% Similarity=0.048 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
|+.++.++|-++++.|+++....+++.. -|+.++... ..++ --....+.|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHH
Confidence 5677888888888888888888888665 444332210 0000 112335677777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHhc
Q 010790 180 KVSAETGRVEKVYQYLQKLRS-TVRCVNEETGKIIEDWFS 218 (501)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~M~~-~~~~p~~~t~~~i~~~f~ 218 (501)
.+|+.+|+...|+.+++...+ -++..+..++..++.|+.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777776543 456667777777777773
No 77
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.67 E-value=0.068 Score=52.74 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh
Q 010790 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (501)
Q Consensus 59 ~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (501)
.+|..++..+.+.+ .++.|+.+|.+-.+.+ +...+....++|. |...++.+.|..+|+...+.. .-+.
T Consensus 2 ~v~i~~m~~~~r~~--------g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~ 70 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--------GIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCH
Confidence 57888888877776 6999999999988643 2344444444443 333577888999999984443 3466
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ---QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~---~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~ 214 (501)
.-|..-|+.+.+.++.+.|+.||+..... +.++. ..|..+|+-=.+.|+.+.+..+..++.+. .|+......+.
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 77888889999999999999999998765 33222 48999999999999999999999999875 55544444444
Q ss_pred HHh
Q 010790 215 DWF 217 (501)
Q Consensus 215 ~~f 217 (501)
.-|
T Consensus 148 ~ry 150 (280)
T PF05843_consen 148 DRY 150 (280)
T ss_dssp CCT
T ss_pred HHh
Confidence 433
No 78
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.13 Score=49.22 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=44.1
Q ss_pred HhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010790 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (501)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~----~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~ 187 (501)
.+..+.+.|...++.| ..- -+-.|.+-|-.++.+ .+.+..|+-+|++|.++ ..|+..+.|-+..++...|+
T Consensus 148 lk~~r~d~A~~~lk~m-q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKM-QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHH-Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 3445556666666666 332 233444433333332 33455566666666432 34555555555556666666
Q ss_pred hHHHHHHHHHHHhC
Q 010790 188 VEKVYQYLQKLRST 201 (501)
Q Consensus 188 ~~~a~~ll~~M~~~ 201 (501)
+++|..++++....
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555443
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.45 E-value=0.13 Score=45.11 Aligned_cols=126 Identities=11% Similarity=0.022 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh
Q 010790 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (501)
Q Consensus 60 ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (501)
.|..++...... ....+...++.+...+..-. ....-.+...+...|++++|...|+.. ....-.|..
T Consensus 14 ~y~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~-~~~~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQAG---------DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKA-LANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHCC---------CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCHHH
Confidence 455555555433 57888888999887533221 222333457788899999999999999 665432332
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010790 138 --RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (501)
Q Consensus 138 --~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~ 197 (501)
...-.|-..+...|+.++|...++....... ....+..+-+.|.+.|+.++|...|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2333456677789999999999977544333 334566677789999999999998875
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.43 E-value=0.13 Score=45.34 Aligned_cols=103 Identities=9% Similarity=-0.087 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
.+..+-..+...|++++|...|... .... +.+...|..+-..+.+.|++++|...|+.....+ ..+...|..+-.++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWL-VMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3556778889999999999999998 4332 2466788888888999999999999999998753 33778899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
.+.|+.++|...|+..... .|+...+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 9999999999999987654 4555443
No 81
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.39 E-value=0.066 Score=41.13 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
+..+...+...|++++|..++.+. .+.. +.+...+..+-..|...|+.++|.++|+......- .+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKA-LELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHH-HhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 456677778889999999999888 4321 12336677777888888999999999988776532 24467888888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 010790 184 ETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~ 200 (501)
..|+.++|...+.....
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 89999999888877654
No 82
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=0.37 Score=51.31 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-H
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-E 101 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd-~ 101 (501)
..||.|-.++-..|++.+|...|.....-. |+ .-+.+.|-..+...+ .+++|..+|..-.+- -|. .
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~--------~~e~A~~ly~~al~v--~p~~a 388 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQG--------KIEEATRLYLKALEV--FPEFA 388 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhc--------cchHHHHHHHHHHhh--Chhhh
Confidence 477778888888888888888887766532 22 344555556666666 788888888776553 233 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE-QQEIAALL 179 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd-~~t~~~Li 179 (501)
...|.|...|-+.|++++|..-+++. ..|.|.- -+|+.+=..|-..|+++.|...+.+...- .|. ....+.|-
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykea---lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLa 463 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEA---LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLA 463 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHH---HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHH
Confidence 46778888888888888888888877 3455654 56777777788888888888888776543 333 24678888
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 010790 180 KVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~M~~ 200 (501)
+.|..+|+..+|+.-++.-.+
T Consensus 464 si~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHc
Confidence 888889999998888877543
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.23 E-value=0.29 Score=50.70 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC
Q 010790 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~ 98 (501)
..+...|..-|..| ..|+.++|+..++.+... .|+..-|..+.. .+...+ +..+|.+.++.+... .
T Consensus 304 ~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l--~ 370 (484)
T COG4783 304 GGLAAQYGRALQTY-LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL--D 370 (484)
T ss_pred cchHHHHHHHHHHH-HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc--C
Confidence 44445565555444 456777777777775543 455555555544 666666 677777777777653 3
Q ss_pred CC-HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 99 PN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 99 pd-~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
|+ ....-.+-.+|.+.|++.+|..+++.. . ...+-|...|..|-.+|...|+..+|..-..|+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~-~-~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------- 434 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRY-L-FNDPEDPNGWDLLAQAYAELGNRAEALLARAEG-------------- 434 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHH-h-hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH--------------
Confidence 44 445556667777788888887777776 2 233446677788888888888777776665554
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
|.-.|.++.|+..+....+.
T Consensus 435 ----~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ----YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----HHhCCCHHHHHHHHHHHHHh
Confidence 34467777777777666554
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.22 E-value=0.34 Score=53.52 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--------------C------------CCCCC
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA--------------T------------DPSSK 78 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~--------------~------------~~~~k 78 (501)
.+..--..+++ |+.++|.+++.+..+..- .+...|-+|=..+-..| + +...+
T Consensus 142 ll~eAN~lfar-g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFAR-GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 44444555666 999999999999887642 34566777655555554 0 11223
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC--Ch----hhHHHHHHHHHHcCC
Q 010790 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP--RL----RTYDPALFCFCENLE 152 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P--~~----~ty~~lI~~~~~~g~ 152 (501)
.|.+++|.-.|.+..... ++|...+---+..|-+.|+...|++-|.+| -.. .| |. -+--.++..|-..++
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l-~~~--~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQL-LQL--DPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHH-Hhh--CCchhHHHHHHHHHHHHHHHHHhhH
Confidence 445666666666665532 234444444556677788888888888777 322 23 11 222233455666777
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 010790 153 AEKAYEVEEHMGLMG-LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (501)
Q Consensus 153 ~~~A~~lf~~M~~~g-v~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~ 208 (501)
-+.|.+.++.-...+ -.-+...++.++..|.+....+.|.....++......++++
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 777877777665531 22355577888888888888888888888887744444443
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.19 E-value=0.4 Score=44.67 Aligned_cols=127 Identities=9% Similarity=0.092 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHH-HHHcCC--HHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFC-FCENLE--AEKA 156 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~-~~~~g~--~~~A 156 (501)
..+++...+....... +.|...|..|-..|...|+.++|...|+.. .. +.| +...+..+-.+ |...|+ .++|
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~A-l~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQA-LQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5677777777655542 457889999999999999999999999988 43 235 45566665555 467777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 157 YEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (501)
Q Consensus 157 ~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i 213 (501)
.+++++....+-. +...+..|-..+.+.|++++|...++++.+. ..|+..-..+|
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence 9999999887533 6678888889999999999999999998664 34455555554
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.17 E-value=0.11 Score=45.81 Aligned_cols=82 Identities=9% Similarity=-0.127 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
++++|...|+...... +.+...|..+-.++.+.|++++|...|+.. ... -+.+...+..+-.++.+.|+.++|...|
T Consensus 39 ~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A-l~l-~p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHA-LML-DASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-Hhc-CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666655432 225556666666666666666666666666 332 1124455555556666666666666666
Q ss_pred HHHHH
Q 010790 161 EHMGL 165 (501)
Q Consensus 161 ~~M~~ 165 (501)
+....
T Consensus 116 ~~Al~ 120 (144)
T PRK15359 116 QTAIK 120 (144)
T ss_pred HHHHH
Confidence 66554
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.15 E-value=0.21 Score=42.86 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
+......+...+...|+.++|.+.|+.. ...+ +.+...|..+-..|.+.|+.+.|..+|+.....+ ..+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLL-AAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 3445667778888999999999999998 4432 2466788888888999999999999999877654 33567787788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
..|...|+.++|...|.+..+. .|+...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 8899999999999999887664 4555443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.12 E-value=0.81 Score=46.29 Aligned_cols=165 Identities=8% Similarity=-0.029 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC-CCCH--HH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-IPNE--AS 103 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~-~pd~--~t 103 (501)
..+-..+...|++++|...|++..+.. +.+...+..+-..+...+ ++++|...+++...... .|+. ..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g--------~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG--------RFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC--------CHHHHHHHHHhhhhccCCCcchhHHH
Confidence 344457788999999999999988754 233455556655777777 89999999998776432 2332 34
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCC-CCChhhH-H--HHHHHHHHcCCHHHHHHH---HHHHHHCCCCCCHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTY-D--PALFCFCENLEAEKAYEV---EEHMGLMGLSLEQQEIA 176 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty-~--~lI~~~~~~g~~~~A~~l---f~~M~~~gv~pd~~t~~ 176 (501)
|..+...+...|+.++|..++++. ..... .+..... + .++.-+-..|..+.+.+. ...-... .......++
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~-~~~~~~~~~ 266 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTH-IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH-FPDHGLAFN 266 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh-cCcccchHH
Confidence 567888999999999999999997 43221 1222211 2 223333344543333332 2221111 110112222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhCC
Q 010790 177 --ALLKVSAETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 177 --~Li~~~~~~g~~~~a~~ll~~M~~~~ 202 (501)
....++...|+.++|..++..+....
T Consensus 267 ~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 267 DLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666777899999999999987643
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.11 E-value=1.9 Score=43.74 Aligned_cols=166 Identities=8% Similarity=-0.023 Sum_probs=93.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010790 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (501)
Q Consensus 30 I~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~ 109 (501)
..+--+.||.+.|-....+..+.--.++...+-+.-......+ +...|..-.+++.+.+.. +........+
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~pr-~~~vlrLa~r 195 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMTPR-HPEVLRLALR 195 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhCcC-ChHHHHHHHH
Confidence 3334444555555555555443322222222222222333333 455555555555554333 4455667777
Q ss_pred HHHhCCCHHHHHHHHHHhHhhcCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 110 LAASKNDGDYAFVLIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~gi~P~~-------~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
.|.+.|++.....++.+| .+.|+--+. .+|+.+++-....++.+.-..-++..+.+ ..-+...-.+++.-+
T Consensus 196 ~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~l 273 (400)
T COG3071 196 AYIRLGAWQALLAILPKL-RKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERL 273 (400)
T ss_pred HHHHhccHHHHHHHHHHH-HHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHH
Confidence 777777777777777777 566554333 45666666655555555544444444432 222444556677778
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVN 206 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~ 206 (501)
.+.|+.++|.++..+-.+.+..|+
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh
Confidence 888999999999888877776666
No 90
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.45 Score=45.66 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHH
Q 010790 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAA----SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~----~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~ 154 (501)
..+++-|....+.|+.- -+..|.|-|..++. -.+...+|+-+|++| . .+..|+.-+-|-+..++...|+++
T Consensus 150 ~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~-s-~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-S-EKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-h-cccCCChHHHccHHHHHHHhcCHH
Confidence 33566677777777642 46667775555554 466899999999999 3 346789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 010790 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK-VYQYLQKLRS 200 (501)
Q Consensus 155 ~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~-a~~ll~~M~~ 200 (501)
+|..++++...+.-. +..+...||-.....|...+ ..+.+..++.
T Consensus 225 eAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 225 EAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999887543 56677777776666665433 3444455543
No 91
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.08 E-value=0.083 Score=45.42 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=48.4
Q ss_pred hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 010790 130 EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAET 185 (501)
Q Consensus 130 ~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~-gv~pd~~t~~~Li~~~~~~ 185 (501)
...+.|+.++-.+++.+|+.+|++..|.++.+..... ++..+..+|..|+.-+...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3457799999999999999999999999999887655 8888899999999876553
No 92
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.69 Score=47.42 Aligned_cols=128 Identities=11% Similarity=0.128 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC
Q 010790 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (501)
Q Consensus 57 ~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (501)
|+...+-|-.+|-+.| +-..|++.+-+- -+.++-|..|..-|..-|....-++.|...|+.. .-++|+
T Consensus 591 dp~ilskl~dlydqeg--------dksqafq~~yds-yryfp~nie~iewl~ayyidtqf~ekai~y~eka---aliqp~ 658 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEG--------DKSQAFQCHYDS-YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA---ALIQPN 658 (840)
T ss_pred CHHHHHHHHHHhhccc--------chhhhhhhhhhc-ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcCcc
Confidence 3444444444554444 777777766543 2346678889888999999999999999999987 457799
Q ss_pred hhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010790 137 LRTYDPALFCFCE-NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 137 ~~ty~~lI~~~~~-~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
..-|..||..|.+ .|+..+|+++|....++ +.-|..+.--|++.+...|.. ++.+.-+++
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 9999999987764 79999999999998654 555888888899988877753 343333333
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.24 Score=48.74 Aligned_cols=169 Identities=8% Similarity=-0.006 Sum_probs=116.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC
Q 010790 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~ 98 (501)
++-..||-.|-..|.+-.++..|+.+|.+-.+. .|-.+||-.=+. .....+ ..++|.++|....+. ..
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~--------~~~~a~~lYk~vlk~-~~ 321 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME--------QQEDALQLYKLVLKL-HP 321 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH--------hHHHHHHHHHHHHhc-CC
Confidence 344568999999999999999999999876543 566677644332 332233 577888888887664 23
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 010790 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ--QEIA 176 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~--~t~~ 176 (501)
-|+.....+..+|.-.++++.|+..+..+ ...|+ -+..-|+.+=-+|.-.+++|.++.-|++....--.|+. ..|-
T Consensus 322 ~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 322 INVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred ccceeeeeeeeccccCCChHHHHHHHHHH-HHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 45666667777888889999999999998 77887 46667777766677778888888888776654333333 2455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
.|--..+..|+...|.+.|+--..+
T Consensus 400 Nlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 400 NLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred ccceeEEeccchHHHHHHHHHHhcc
Confidence 5544555566666666666554433
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.95 E-value=0.32 Score=41.63 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
+.++|.+.|+.....+ +.+...+..+...+...|++++|..++++. .... +.+..++..+-..|...|+.++|...|
T Consensus 32 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 32 RYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA-AALD-PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555555554432 224445555555555555555555555555 2221 123344444444555555555555555
Q ss_pred HHHHH
Q 010790 161 EHMGL 165 (501)
Q Consensus 161 ~~M~~ 165 (501)
+....
T Consensus 109 ~~al~ 113 (135)
T TIGR02552 109 DLAIE 113 (135)
T ss_pred HHHHH
Confidence 55544
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.91 E-value=0.33 Score=56.02 Aligned_cols=142 Identities=8% Similarity=0.014 Sum_probs=105.2
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhCCCHHHH
Q 010790 46 YESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-NVI---PNEASVTSVARLAASKNDGDYA 120 (501)
Q Consensus 46 f~~m~~~gv~p~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~-g~~---pd~~t~~~li~~~~~~g~~~~A 120 (501)
|++..... || ...|-.-|...-..+ .++.|++++++.... ++. --...|.++++.-...|.-+..
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~Lels--------EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELS--------EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhh--------hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 44444442 33 334544455444444 799999999987763 221 1234789999999999999999
Q ss_pred HHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 121 FVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 121 ~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.++|++. .+. + --...|..|..-|.+.+..++|-++++.|..+= .-....|..++..+.+..+.+.|.+++.+-.+
T Consensus 1517 ~kVFeRA-cqy-c-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1517 KKVFERA-CQY-C-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHH-HHh-c-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999998 443 2 135778999999999999999999999998762 13567899999999999999999999987655
Q ss_pred C
Q 010790 201 T 201 (501)
Q Consensus 201 ~ 201 (501)
.
T Consensus 1593 ~ 1593 (1710)
T KOG1070|consen 1593 S 1593 (1710)
T ss_pred h
Confidence 4
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.75 E-value=0.59 Score=43.54 Aligned_cols=131 Identities=8% Similarity=-0.003 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCC
Q 010790 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARL-AASKN 115 (501)
Q Consensus 37 g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~-~~~~g 115 (501)
++.++++..+....+.+ +.|...|..|-..+...+ ++++|...|+....... -|...+..+..+ +...|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g--------~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN--------DYDNALLAYRQALQLRG-ENAELYAALATVLYYQAG 122 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 34455555555544332 345667777766777777 89999999998877543 266777777775 46777
Q ss_pred C--HHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 116 D--GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 116 ~--~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
+ .++|.+++++. .+..- -+...+..+-..+.+.|++++|...|+.+.... .|+..- ..+|..
T Consensus 123 ~~~~~~A~~~l~~a-l~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r-~~~i~~ 186 (198)
T PRK10370 123 QHMTPQTREMIDKA-LALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR-TQLVES 186 (198)
T ss_pred CCCcHHHHHHHHHH-HHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH-HHHHHH
Confidence 7 59999999999 44321 256788888888999999999999999997653 344433 445444
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.71 E-value=0.29 Score=40.48 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLMG--LSLEQQEIA 176 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g--v~pd~~t~~ 176 (501)
++-.+...+.+.|+.++|...|..+ ... .|+ ...+..+-..+.+.|+.+.|...|+.+.... -......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAF-LKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4556777788899999999999998 432 133 2355567888899999999999999987642 111245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
.+...+.+.|+.++|...++++...
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888888999999999999998876
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.65 E-value=0.26 Score=37.69 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~ 106 (501)
..+...+.+.|++++|+.+|+++.+..- .+...+..+-..+...+ ++++|.+.|+....... .+..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~-~~~~~~~~ 73 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLG--------KYEEALEDYEKALELDP-DNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC-cchhHHHH
Confidence 3344445555666666666655544321 11122322222333333 45555555555444321 12234455
Q ss_pred HHHHHHhCCCHHHHHHHHHHh
Q 010790 107 VARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M 127 (501)
+...+...|+.+.|...+...
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 555555555555555555544
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.64 E-value=1.2 Score=47.82 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
++.-+...|-..|+.++|++.+++. ... .|. +..|..--..|-+.|++.+|.+..++....+.. |-..=+--...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~a-I~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKA-IEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-Hhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHH
Confidence 4455577788999999999999987 443 355 456666667788999999999999998877654 55555666778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 182 SAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+.++|+.++|.+++......+..|-......-..||
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 889999999999999998887777777777778888
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.60 E-value=0.36 Score=50.61 Aligned_cols=149 Identities=10% Similarity=0.122 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCC
Q 010790 39 LTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKND 116 (501)
Q Consensus 39 ~~~A~~lf~~m~~~-gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p-d~~t~~~li~~~~~~g~ 116 (501)
.+.....++++... .+.|+ .+|..+|+.-.+.. -+..|+.+|.+..+.+..+ +++.++++|.-|| .++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~e--------GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAE--------GLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhh--------hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCC
Confidence 33444555554432 24444 45666666444433 3677777888777776666 7777777777666 466
Q ss_pred HHHHHHHHHHhHhhcCCCCChhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 010790 117 GDYAFVLIKRMNNEFNVVPRLRT-YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ--QEIAALLKVSAETGRVEKVYQ 193 (501)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~~t-y~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~--~t~~~Li~~~~~~g~~~~a~~ 193 (501)
..-|.++|+-=.+..| |.-. -..-++-+...++-..|..||+.....++.||. ..|..||+.=+.-|+.+.+++
T Consensus 417 ~~~AfrIFeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred hhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 7777777765324443 3322 345566666777777788888877777665544 468888877777788777777
Q ss_pred HHHHHHh
Q 010790 194 YLQKLRS 200 (501)
Q Consensus 194 ll~~M~~ 200 (501)
+-+++..
T Consensus 494 lekR~~~ 500 (656)
T KOG1914|consen 494 LEKRRFT 500 (656)
T ss_pred HHHHHHH
Confidence 7766643
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.42 E-value=2.2 Score=47.53 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHH-HHHHHHHHcCCHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD-PALFCFCENLEAEKAYE 158 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~lI~~~~~~g~~~~A~~ 158 (501)
.+++|..+++...+. .| +......+...+.+.+++++|+..+++. .. ..|+..+.- .+=.++.+.|+.++|.+
T Consensus 101 ~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~-l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 101 RSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELY-FS--GGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred CcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH-hh--cCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 788888888887763 34 4667778888888899999999888888 33 236654444 44445667889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 159 lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
+|++....+ .-+...|..+-.++...|+.++|...|++-.+
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998888732 22467788888888888888888888877644
No 102
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.38 E-value=0.42 Score=49.02 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh
Q 010790 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (501)
Q Consensus 59 ~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (501)
+.|..+|+...+.. -++.|+.+|-+..+.| +.+++..++++|.-++ .|+..-|..+|+-=.+.. ||.
T Consensus 398 ~v~C~~~N~v~r~~--------Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKR--------GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDS 465 (660)
T ss_pred hHHHHHHHHHHHHh--------hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCc
Confidence 56777787554443 3899999999999998 5699999999999887 578888999997541443 666
Q ss_pred hhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010790 138 RTY-DPALFCFCENLEAEKAYEVEEHMGLMGLSLE--QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (501)
Q Consensus 138 ~ty-~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd--~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~ 214 (501)
-.| +--+.-+.+.+|-+.|..+|+.-..+ +..+ ...|..||+.=..-|+...|+.+=++|... .|.+.+..+..
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 555 45666777899999999999944332 1112 357999999999999999999999999865 89999988888
Q ss_pred HHh
Q 010790 215 DWF 217 (501)
Q Consensus 215 ~~f 217 (501)
+-+
T Consensus 543 Sry 545 (660)
T COG5107 543 SRY 545 (660)
T ss_pred HHH
Confidence 887
No 103
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=1.2 Score=38.56 Aligned_cols=128 Identities=20% Similarity=0.128 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
....+|..+.+.+.+......++.+...+. .+....|.||.++++.. ..+..+.+.. ..+....
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~---------~~~ll~~l~~------~~~~yd~ 72 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD---------PQKEIERLDN------KSNHYDI 72 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC---------HHHHHHHHHh------ccccCCH
Confidence 456788888888999999999999888773 67778999999888765 4445555442 1233445
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCEN-LEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~-g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
..+++.|-+.+.++++..++..+ .. |...+..+... ++.+.|.+.+.+- -+...|..++..+.
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~-~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD-GN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh-cC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 56899999999999999999888 32 34455555555 8899998887752 25668888887775
Q ss_pred h
Q 010790 184 E 184 (501)
Q Consensus 184 ~ 184 (501)
.
T Consensus 137 ~ 137 (140)
T smart00299 137 D 137 (140)
T ss_pred c
Confidence 4
No 104
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=1.8 Score=44.73 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=134.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHH---HhCC--------CCC------------CCChh
Q 010790 27 LINLQSCT-KSKDLTTAISLYESAHSQN-LRL-SLHHFNALLYLC---SDSA--------TDP------------SSKDS 80 (501)
Q Consensus 27 n~lI~~~~-k~g~~~~A~~lf~~m~~~g-v~p-~~~ty~~LL~~c---~~~~--------~~~------------~~k~~ 80 (501)
-+.+.++. ...|+++|+++|+++.+.. .+. |..+|+.+|..- ++.+ ++- |+-.+
T Consensus 265 ~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 265 KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHH
Confidence 33443333 3579999999999999774 232 567888877532 2211 111 22345
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
..++|...|..-.+.+.. -...||.|=+-|....+...|.+-++.. .+. .+.|-+.|-.|=++|.-.+...-|+-.|
T Consensus 345 eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA-vdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA-VDI-NPRDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred hHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH-Hhc-CchhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 788899999988765433 4567999999999999999999999988 332 3457889999999999988888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 010790 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (501)
Q Consensus 161 ~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~ 218 (501)
++...-. +-|...|.+|-.+|.+.++.++|...|.+-..-+-. +...+..+...+.
T Consensus 422 qkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye 477 (559)
T KOG1155|consen 422 QKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYE 477 (559)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 8876431 337889999999999999999999999988776544 2333344444443
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.67 Score=51.78 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=124.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 32 SCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSA----TDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (501)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g-v~p~~~ty~~LL~~c~~~~----~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~ 106 (501)
.|.+.....-|.+-|....+.- ..+|+++--+|=+.|-... .+.....+..++|+++|.+..... +-|...-|-
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccc
Confidence 4555555555555454443322 2345444444433332221 122222346788999999987753 458888888
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAET 185 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~-gv~pd~~t~~~Li~~~~~~ 185 (501)
+--.++..|++.+|..+|.+. ++... -..-+|-.+-.+|...|++..|.++|+....+ .-.-+......|-+++-++
T Consensus 652 IgiVLA~kg~~~~A~dIFsqV-rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQV-REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHH-HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999 76644 24457888899999999999999999886554 4445677888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 186 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 186 g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
|.+.+|.+.+..-+.....-....|...+-.+
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 99999998887766553332333445555554
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.26 E-value=1 Score=47.29 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCH
Q 010790 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-NVIPNEASVTSVARLAASKNDG 117 (501)
Q Consensus 39 ~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~-g~~pd~~t~~~li~~~~~~g~~ 117 (501)
.++|.++++...+.-.+-+..+|..+-. +..+..+.- ..+....+++..... ...|+ .+|..+|+..-+..-+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~-~eE~~~~~n----~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALAD-YEESRYDDN----KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGL 382 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHhcccc----hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhH
Confidence 6899999998776655557778877754 222221100 255566777776653 33454 5788899999999999
Q ss_pred HHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010790 118 DYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEH-MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (501)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~-M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll 195 (501)
..|+.+|.+. ++.+..+ +++.++++|.-|| .+|-+-|+++|+- |+..|-. ..--...++-+..-++-..+..+|
T Consensus 383 kaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 383 KAARKIFKKA-REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred HHHHHHHHHH-hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHH
Confidence 9999999999 8888777 8899999999886 5788999999975 4444433 334467788888889889999999
Q ss_pred HHHHhCCCCCCHH--HHHHHHHH
Q 010790 196 QKLRSTVRCVNEE--TGKIIEDW 216 (501)
Q Consensus 196 ~~M~~~~~~p~~~--t~~~i~~~ 216 (501)
++....++.|+.+ .+...++.
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHH
Confidence 9999886666543 44444433
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.26 E-value=1.9 Score=46.29 Aligned_cols=162 Identities=9% Similarity=-0.003 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHHHHHHHH--HHHHhCCCCCCCChhhHHHHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----N----------LRLSLHHFNALL--YLCSDSATDPSSKDSALRHGFRV 88 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~----g----------v~p~~~ty~~LL--~~c~~~~~~~~~k~~~~~~a~~l 88 (501)
.|+.+-..|.......-...++...... + -.|+...|...+ ..+...| +.++|+++
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g--------~~~~Al~~ 216 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG--------DYEKALEY 216 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 4555555555444455555666665432 1 234444444332 2555666 89999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 89 FDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 89 f~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
.+.-.+. .|+ +-.|.+-.+.+-+.|++.+|.+.++.. +.... -|...=+-....+.++|++++|.+++......+
T Consensus 217 Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~A-r~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 217 IDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEA-RELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9987764 354 667888999999999999999999999 66554 466666777788889999999999999988776
Q ss_pred CCCCHH------HH--HHHHHHHHhcCChHHHHHHHHHH
Q 010790 168 LSLEQQ------EI--AALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 168 v~pd~~------t~--~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
..|-.. .| ..--.+|.+.|+...|+..|+..
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 544221 12 33356788889888887666654
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.12 E-value=1.7 Score=41.20 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR-LSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~-p~~-~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
.+..+-..|.+.|++++|+..|+++.+..-. |.. .++..+-..+.......+...+..++|.+.|+.+....... ..
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~ 150 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EY 150 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hh
Confidence 5566778899999999999999999865421 211 12222222333221223334457899999999987753321 11
Q ss_pred HH-----------------HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010790 103 SV-----------------TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (501)
Q Consensus 103 t~-----------------~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~ 164 (501)
.+ -.+...|.+.|+.++|...+.+......-.| ....+..+..+|.+.|+.++|...++.+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1345668889999999999999833321112 34688899999999999999999998886
Q ss_pred HC
Q 010790 165 LM 166 (501)
Q Consensus 165 ~~ 166 (501)
..
T Consensus 231 ~~ 232 (235)
T TIGR03302 231 AN 232 (235)
T ss_pred hh
Confidence 54
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.06 E-value=1.4 Score=42.19 Aligned_cols=155 Identities=8% Similarity=-0.075 Sum_probs=99.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010790 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (501)
Q Consensus 30 I~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~ 109 (501)
=..+--.|+-+.+..+....... -+-|...-+.+...-.+.| ++..|...|.+...- -++|-.+||.+--
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g--------~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNG--------NFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhc--------chHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 34445556666666555443321 1123333444555555555 688888888876542 4567788888888
Q ss_pred HHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010790 110 LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189 (501)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~ 189 (501)
+|.+.|+.++|..-|.+. .+... -+...+|.|--.|.-.||.+.|..++..-...+-. |...-..|.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qA-l~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQA-LELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHH-HHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 888888888888888777 33221 23456677777777788888888888777665433 5555666666777788888
Q ss_pred HHHHHHHH
Q 010790 190 KVYQYLQK 197 (501)
Q Consensus 190 ~a~~ll~~ 197 (501)
+|..+-..
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 88776654
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.00 E-value=0.88 Score=37.51 Aligned_cols=95 Identities=8% Similarity=0.025 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC--CC
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR-L-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI--PN 100 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~-p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~--pd 100 (501)
.+-.+...+.+.|+.++|.+.|..+.+..-. + ....+..+-..+...+ ++++|...|+.+...... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCCcc
Confidence 3444555556667777777777666543210 1 1122222333444444 566666666666543211 11
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
..++..+...+.+.|+.++|...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 334555556666666666666666666
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.6 Score=52.11 Aligned_cols=171 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 010790 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND 116 (501)
Q Consensus 37 g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~ 116 (501)
+..+.|+.+|.+..+..- -|.+.-|-+=..++..+ ++.+|.+||.++.+.... +.-+|-.+.+.|...|+
T Consensus 626 k~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg--------~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKG--------RFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhcc--------CchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHH
Confidence 345678888887665432 23333333322333334 899999999999987652 23367789999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------
Q 010790 117 GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA------------- 183 (501)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~------------- 183 (501)
+..|.++|+...++..-.-+....+.|-.++-++|.+.+|.+..-.-...-..-..+-+|..+-..-
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 9999999987746665555777788888899999999999887655444332223344554443211
Q ss_pred -----hcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHh
Q 010790 184 -----ETGRVEKVYQYLQKLRSTVRC-VNEETGKIIEDWF 217 (501)
Q Consensus 184 -----~~g~~~~a~~ll~~M~~~~~~-p~~~t~~~i~~~f 217 (501)
..+..+.|.++|.+|...+-. .+......=...|
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c 815 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDKRISKTVIAQEAQLC 815 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 124567889999999887665 4444444434444
No 112
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.93 E-value=0.24 Score=43.34 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 010790 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR-----STVRCVNEETGKII 213 (501)
Q Consensus 139 ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~-----~~~~~p~~~t~~~i 213 (501)
+...++..+...|+.+.|..+...+.... +-++..|..||.+|...|+...|.+.|+++. +-|+.|++.|....
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 44555666667777777777777776553 2367777777888888887777777777663 34788888775443
No 113
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=2 Score=44.65 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=104.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVA 108 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li 108 (501)
-+.+=.|+..+..|..++++....=-+.|..=|-- +.+=-. .|.+.-|.++|+.-.+ .+|+...|.+.|
T Consensus 113 Yae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~--------LgNi~gaRqiferW~~--w~P~eqaW~sfI 181 (677)
T KOG1915|consen 113 YAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEM--------LGNIAGARQIFERWME--WEPDEQAWLSFI 181 (677)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHH--------hcccHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 34444555566666666665554322233222211 111111 2267778888887543 679999999999
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE---- 184 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~---- 184 (501)
+.=.+-..++.|..+++..+ -+.|++.+|--...-=.++|.+..|..||+...+. .-|...=..|+-+++.
T Consensus 182 ~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983 34599999988888888999999999999887653 1233334444445443
Q ss_pred cCChHHHHHHHHHHHhC
Q 010790 185 TGRVEKVYQYLQKLRST 201 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~~~ 201 (501)
....+.|.-+|..-.++
T Consensus 257 qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55677777777766554
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.78 E-value=0.12 Score=38.49 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=8.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHh
Q 010790 106 SVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M 127 (501)
.+..+|.+.|++++|..+++++
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444433
No 115
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.63 E-value=0.095 Score=41.25 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 010790 143 ALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 143 lI~~~~~~g~~~~A~~lf~~ 162 (501)
+-.+|.+.|+.++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44445555555555555544
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.60 E-value=3.6 Score=45.92 Aligned_cols=142 Identities=9% Similarity=0.003 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHH-FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~t-y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
..+-.|-....+.|..++|..+++...+ +.|+... ...+...+.+.+ .+++|+..+++...... -+..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~--------~~eeA~~~~~~~l~~~p-~~~~ 155 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQ--------GIEAGRAEIELYFSGGS-SSAR 155 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhc--------cHHHHHHHHHHHhhcCC-CCHH
Confidence 4566677778889999999999999875 4565443 444455777777 89999999999877532 2556
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
....+-.++.+.|+.++|..+|++. ... .|+ ..++..+=.++-+.|+.++|...|+.....- .|...-|+.++.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~-~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERL-SRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHH-Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 6778888999999999999999999 542 244 5677777778889999999999999886542 234445555543
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.81 Score=44.65 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=107.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC------------
Q 010790 32 SCTKSKDLTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI------------ 98 (501)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~-gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~------------ 98 (501)
..-|.|+.++|.+-|....+- |..| ...||.-|..+.+. +.+.|+++..++.++|++
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~---------qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSR---------QYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhh---------hHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 345889999999999997764 4555 47899999888877 488899999999998864
Q ss_pred -CCHH---------------HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 99 -PNEA---------------SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 99 -pd~~---------------t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
||+. .||.-...+.+.|+.+.|.+-+-.|..+..-..|.+|...+--.= -.++.....+-+..
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHH
Confidence 2321 123333345678999999999999944444455777766543332 23444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010790 163 MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 163 M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
+...+-- -..|+..|+-.||++..++.|..++.+=
T Consensus 302 LL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 302 LLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 5444322 2458999999999999999998887663
No 118
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=1.5 Score=47.10 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.|+-+=.-+.....++.|..-|+.. +.+|+..||++-- |. .-|.|.+.++.|.-.|..-.+-+. -|.+..
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYG-lG----~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~ 526 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYG-LG----TVYLKQEKLEFAEFHFQKAVEINP-SNSVIL 526 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHh-hh----hheeccchhhHHHHHHHhhhcCCc-cchhHH
Confidence 4555555566777788888888654 5677799999854 11 123344489999988887765332 266677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ-EIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~-t~~~Li~~~~ 183 (501)
..+-..+-+.|+.++|++++++. -...- -|..+--.....+...++.++|+.+++++++ +.|++. .|-.|-..|.
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A-~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKA-IHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK 602 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHH-HhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 77788888999999999999988 33221 1222223334445567999999999999986 477665 5666677899
Q ss_pred hcCChHHHHHHHHHHHhC
Q 010790 184 ETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~ 201 (501)
+-|..+.|+.-|.-+.+.
T Consensus 603 ~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHccchHHHHhhHHHhcC
Confidence 999999998877766554
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.45 E-value=1.6 Score=41.79 Aligned_cols=106 Identities=7% Similarity=-0.061 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010790 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
-|.....+.++...+.|++.+|...|.+. . ..-+||...||.+=.+|.+.|+.+.|..-|....+--.. +...+|.|
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~-~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNl 174 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKA-A-RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNL 174 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHH-h-ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhH
Confidence 45556677999999999999999999998 3 455689999999999999999999999998877654221 44567888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 179 LKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
.-.|.-.|+.+.|..++..-...+...+.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888899999999999998777544433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.43 E-value=0.86 Score=49.48 Aligned_cols=169 Identities=9% Similarity=0.006 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---------------C-----CCCCChhhHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA---------------T-----DPSSKDSALRH 84 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~---------------~-----~~~~k~~~~~~ 84 (501)
.|.-.|.+|+..|+..+|..+..+-.+ -+|++.-|..|.+..-... . ....+.+++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 466788889999988888888777665 4677777777754322222 0 00111234455
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 010790 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHM 163 (501)
Q Consensus 85 a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M 163 (501)
+.+.|+.-.+-. ..-..||=.+=.++-+.+++..|.+-|... ..+.||. ..||.+=.+|.+.|+-.+|+..+.+-
T Consensus 504 ~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc---vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 504 ADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC---VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH---hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 555544422211 112334544445556678899998888877 2344655 78999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 164 ~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.+-+ .-+...|...+-...+.|.+++|++.+++|.+
T Consensus 580 lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 580 LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8877 44667888888899999999999999988755
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.36 E-value=1.8 Score=39.04 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
....+..+...+...|+.++|...|++. ....-.|. ...+..+-..|.+.|+.++|...+.+.....- -+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEA-LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 3445777777888899999999999988 44322121 35777888888899999999999988776421 14455666
Q ss_pred HHHHHHhcCC-------h-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 178 LLKVSAETGR-------V-------EKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 178 Li~~~~~~g~-------~-------~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
+...|...|+ . ++|.+++.+... .++..+..+..|.+..
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhc
Confidence 6666666555 3 445555544433 2333466666676543
No 122
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.36 E-value=0.24 Score=47.83 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhC-----CCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010790 99 PNEASVTSVARLAASK-----NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (501)
Q Consensus 99 pd~~t~~~li~~~~~~-----g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~ 173 (501)
.|-.+|-+++.-+... +..+-....++.| ++.|+.-|+.+|+.||..+=+..- .|. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 4555555555555442 3444444555566 566666666666666655432111 111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 219 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~ 219 (501)
.+...+-.|- ...+-+..+|+.|..+|+.||.++-..++..|..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 1122222222 2235678999999999999999999999999944
No 123
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=4.2 Score=42.18 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 010790 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (501)
Q Consensus 26 ~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~ 105 (501)
.-.+-+-|+-.++.+.|...|.+..+-+-+ ....|+.|=+=|.... .-..|.+-|+.-.+- .+.|-..|=
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmK--------Nt~AAi~sYRrAvdi-~p~DyRAWY 402 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMK--------NTHAAIESYRRAVDI-NPRDYRAWY 402 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhc--------ccHHHHHHHHHHHhc-CchhHHHHh
Confidence 334556677889999999999998865421 2345666655666655 566788888876653 345888899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010790 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (501)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~ 184 (501)
.|=.+|.-.+...-|+-.|++. . .+.| |.+.|.+|=.+|.+.+.+++|.+.|......|-. +...|..|-+.|-+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA-~--~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~ 478 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKA-L--ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEE 478 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHH-H--hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 9999999999999999999988 3 3344 7799999999999999999999999998877644 66789999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 010790 185 TGRVEKVYQYLQKLRS 200 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~~ 200 (501)
-++.++|...|.+-.+
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999988877654
No 124
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=2.4 Score=42.15 Aligned_cols=134 Identities=10% Similarity=0.206 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC
Q 010790 40 TTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV---IPNEASVTSVARLAASKND 116 (501)
Q Consensus 40 ~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~---~pd~~t~~~li~~~~~~g~ 116 (501)
++.+.+++.|.+.|.+-+.++|-+.+...... +.........+|..+|+.|++.-. .++-.++.+|+.. ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~--~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEE--EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34567899999999998888887655443331 111122257889999999998543 3677888888776 4444
Q ss_pred H----HHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010790 117 G----DYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLE---AEKAYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 117 ~----~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~---~~~A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
. +.+...|+.+ ...|+..+- .-+-+-|-+++..-+ +..+.++++.+.+.|+++....|.++
T Consensus 155 ~e~l~~~~E~~Y~~L-~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKL-ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHH-HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4 4577788888 777775433 222233333332221 45678899999999998877776654
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.59 Score=46.57 Aligned_cols=170 Identities=9% Similarity=0.048 Sum_probs=112.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
.|+.-.|. |-.|.+.+|+.+|..+..++. -+.|-.+..-.+..+ ..|...- ....+.-|.+.|.-.-+++.+-|
T Consensus 284 IPEARlNL-~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~a--alGQe~g-SreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 IPEARLNL-IIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFA--ALGQETG-SREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred ChHhhhhh-eeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHH--HhhhhcC-cHHHHHHHHHHHHHhcccccccc
Confidence 45555554 446788999999999886643 233434433333331 1121111 11246668888776666666544
Q ss_pred HHH-HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 101 EAS-VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 101 ~~t-~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
+.. --++.+.+.-.-.+++.+..++.+ +..=..-|.+.|| +-++++..|...+|+++|-.+....+. |..+|-+++
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 332 234666666677899999999988 6655545666666 467889999999999999777655554 566776655
Q ss_pred -HHHHhcCChHHHHHHHHHHH
Q 010790 180 -KVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 180 -~~~~~~g~~~~a~~ll~~M~ 199 (501)
++|.+++.++.|++++-++.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC
Confidence 67889999999999887764
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.20 E-value=0.23 Score=36.99 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=31.3
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
..|++++|.++|+++.... | +...+-.+..+|.+.|++++|..+++.+... .|+...|..|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4556666666666652221 3 4444455555666666666666666655544 3443444433
No 127
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.20 E-value=2.4 Score=47.14 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=115.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----------------------HHHH-H--HHHhCCCCC
Q 010790 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHF----------------------NALL-Y--LCSDSATDP 75 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty----------------------~~LL-~--~c~~~~~~~ 75 (501)
....++|+++..|.+....+.|......+...-..+|..-| ..=+ + .|--+-
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L--- 390 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL--- 390 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc---
Confidence 33458889999999999999999888888773333333322 1111 2 121111
Q ss_pred CCChhhHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCH
Q 010790 76 SSKDSALRHGFRVFDQMLSNN--VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (501)
Q Consensus 76 ~~k~~~~~~a~~lf~~M~~~g--~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~ 153 (501)
+ ..+....+...+.... +.-+.-.|.-+..+|...|++.+|+.+|..+ ...-..-+...|-.+-.+|...|..
T Consensus 391 --~--~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 391 --K--ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred --c--ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHHHHHHHhhH
Confidence 1 1222233333344444 3445677899999999999999999999999 5554444567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 154 EKAYEVEEHMGLMGLSLE-QQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 154 ~~A~~lf~~M~~~gv~pd-~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
+.|.+.|+..... .|+ ...--+|-..+-+.|+.|+|++.+..|.
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999998764 332 2233445556778999999999999864
No 128
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.19 E-value=0.5 Score=45.70 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 010790 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~ 158 (501)
.+.++-...-+..|.+-|+..|..+|+.||..+-+ ..+.|..+ +-.+.-.|= .+-+-|..
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----------------gkfiP~nv-fQ~~F~HYP--~QQ~C~I~ 144 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----------------GKFIPQNV-FQKVFLHYP--QQQNCAIK 144 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----------------cccccHHH-HHHHHhhCc--hhhhHHHH
Confidence 34445455556667777777777777777665443 33333321 122222222 22345778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 010790 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRV-EKVYQYLQKL 198 (501)
Q Consensus 159 lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~-~~a~~ll~~M 198 (501)
|+++|...|+.||-.+-..||.++.+.+.. .+..+++--|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 999999999999999999999999987764 3444554444
No 129
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=3.6 Score=42.98 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh----hhHHHHH-----HHHHHcC
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPAL-----FCFCENL 151 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~lI-----~~~~~~g 151 (501)
.++++...|++.+++. +--...||-....+...++++.|.+.|+.. .+ +.|+. +.-.++| ..- -.+
T Consensus 443 k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~a-i~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKA-IE--LEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHH-Hh--hccccccccccchhhhhhhHhhhc-hhh
Confidence 5777777777776653 334456777777777777888888877765 32 22331 1111111 111 237
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 152 EAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 152 ~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
|+..|..+.....+.+-. .+..|.+|-..-.+.|+.++|+++|++-..-
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777777776654322 4567888888889999999999999886543
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.02 E-value=0.13 Score=40.48 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhH-HHHHHHHHHcCCHHHHH
Q 010790 80 SALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY-DPALFCFCENLEAEKAY 157 (501)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty-~~lI~~~~~~g~~~~A~ 157 (501)
+.++.|+.+|+.+.+.... ++...+-.+..+|.+.|+.++|..+++.. +.. |+.... -.+-.+|.+.|+.++|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~---~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLD---PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THH---HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCC---CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4789999999999885442 24555556899999999999999999774 333 333222 23345678899999999
Q ss_pred HHHHH
Q 010790 158 EVEEH 162 (501)
Q Consensus 158 ~lf~~ 162 (501)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 131
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.91 E-value=0.43 Score=41.73 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL-----MGLSLEQQE 174 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~-----~gv~pd~~t 174 (501)
+...++..+...|++++|..+...+ ... -+-|...|-.+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~-l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRA-LAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH-Hhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 5667888888999999999999998 332 123678999999999999999999999998853 488888764
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.87 E-value=3.8 Score=36.92 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-
Q 010790 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR- 136 (501)
Q Consensus 60 ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~- 136 (501)
.|..+-..+...+ ++++|...|++..+....++ ...+..+...+.+.|+.++|...+.+. ... .|+
T Consensus 37 ~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~--~p~~ 105 (172)
T PRK02603 37 VYYRDGMSAQADG--------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-LEL--NPKQ 105 (172)
T ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--Cccc
Confidence 3444444566666 89999999999887543332 467889999999999999999999988 432 343
Q ss_pred hhhHHHHHHHHHHcCC
Q 010790 137 LRTYDPALFCFCENLE 152 (501)
Q Consensus 137 ~~ty~~lI~~~~~~g~ 152 (501)
...+..+-..|...|+
T Consensus 106 ~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4555555556666665
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.83 E-value=1.7 Score=38.92 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS--LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~--~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
.|..+...+...|++++|+..|++.......+. ..+|..+-..+...+ ..++|+..|+...... +....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~Al~~~-~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--------EHTKALEYYFQALERN-PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCcHH
Confidence 667778888889999999999999876533221 245666555667777 8999999999887642 22345
Q ss_pred HHHHHHHHHH-------hCCCHHHHHHHHHH
Q 010790 103 SVTSVARLAA-------SKNDGDYAFVLIKR 126 (501)
Q Consensus 103 t~~~li~~~~-------~~g~~~~A~~l~~~ 126 (501)
++..+...+. +.|+.++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5666666666 66666655555443
No 134
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=93.77 E-value=0.068 Score=48.34 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=62.6
Q ss_pred EEEeCccccccccccCCC--CcCch----hHHHHHHHHHHhcCCcceEEEecccccCCCCCCcchHHHHHHHHhcCeEEe
Q 010790 319 AIVDGANIGLYQQNFTEG--GFSVP----QLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYM 392 (501)
Q Consensus 319 ~v~Dg~Nv~~~~~~~~~~--~~~~~----~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
+||||.||.+.-..+..- ..++. +|...+..+... .+..++||---.+..+....... ...-.++|
T Consensus 1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~~-~~~~v~VVFDa~~~~~~~~~~~~-------~~gi~Vvf 72 (166)
T PF05991_consen 1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQF-SGYEVIVVFDAYKVPGGSEEREE-------YGGIEVVF 72 (166)
T ss_pred CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhcc-cCCEEEEEEeCCcCCCCCceeee-------eCceEEEE
Confidence 489999999873222111 11222 333333343332 24677777644433332211100 13457899
Q ss_pred CCCCCCCcHHHHHHHHhc-----CceEEeccch-hhhHhh----hcCchhHHHhhhcc
Q 010790 393 TPHGSNDDWYWLYAAVKL-----RCLLVTNDEM-RDHIFE----LLGSNFFLKWKERH 440 (501)
Q Consensus 393 t~~~~~DD~~~l~aa~~~-----~~~~vsnD~~-Rdh~~~----~~~~~~f~rW~~~h 440 (501)
|+.+...|-|+.-.+-.. .+.|||+|.. +.+.+. -++.+.|.+|....
T Consensus 73 t~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~~ 130 (166)
T PF05991_consen 73 TKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELKAA 130 (166)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHHHH
Confidence 999877777776665543 5799999976 444432 22346676665544
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.60 E-value=1.6 Score=44.59 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHH
Q 010790 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAY 157 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~ 157 (501)
.+++++|+++|++..+... -+...|..+..+|.+.|++++|+..++.. ... .| +...|..+-.+|...|+++.|.
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l--~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKA-IEL--DPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--CcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3456666666666655322 24455556666666666666666666665 222 23 3345555555566666666666
Q ss_pred HHHHHHHH
Q 010790 158 EVEEHMGL 165 (501)
Q Consensus 158 ~lf~~M~~ 165 (501)
..|++...
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66666554
No 136
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.12 E-value=1.3 Score=43.93 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC----CHHHHHHHHHHhHhhcC--CCCChhhHHHHHHHHHHcCC
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS--KN----DGDYAFVLIKRMNNEFN--VVPRLRTYDPALFCFCENLE 152 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~--~g----~~~~A~~l~~~M~~~~g--i~P~~~ty~~lI~~~~~~g~ 152 (501)
.+++...+++.|.+.|+.-+..+|-+..-.... .. ....|..+|+.|.+.+. ..++-.++.+||.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 578899999999999999998877664433333 22 34579999999933333 23666888888877 3343
Q ss_pred ----HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 153 ----AEKAYEVEEHMGLMGLSLEQ--QEIAALLKVSAETGR--VEKVYQYLQKLRSTVRCVNEETGKII 213 (501)
Q Consensus 153 ----~~~A~~lf~~M~~~gv~pd~--~t~~~Li~~~~~~g~--~~~a~~ll~~M~~~~~~p~~~t~~~i 213 (501)
++.++.+|+.+...|+..+- ...+.+|..+-.... ..++.++++.+.++++++....+..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45678899999988876533 333434433322222 45789999999999999888776443
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.07 E-value=1.6 Score=44.59 Aligned_cols=105 Identities=10% Similarity=-0.095 Sum_probs=82.4
Q ss_pred HHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010790 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (501)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~ 187 (501)
...+...|++++|.++|++. .... +-+...|..+-.+|.+.|+++.|...++......- .+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~A-l~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQA-IDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 34566789999999999998 4432 13456777778889999999999999999987532 256688888889999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 188 VEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 188 ~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+++|+..|++.... .|+...+...+..|
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999998764 57766666666665
No 138
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.07 E-value=9.2 Score=37.50 Aligned_cols=139 Identities=12% Similarity=0.167 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-CC-CHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 010790 81 ALRHGFRVFDQMLS-NNVIPNEASVTSVARLAAS-KN-DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY 157 (501)
Q Consensus 81 ~~~~a~~lf~~M~~-~g~~pd~~t~~~li~~~~~-~g-~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~ 157 (501)
.+.+|+.+|+...- ..+--|..+...+++.... .+ ....--++.+-++...+-.++.-+...+|..+++.+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45667777774332 3356788888888888777 22 344445666666445556688889999999999999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHhcc
Q 010790 158 EVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQK-----LRSTVRCVNEETGKIIEDWFSG 219 (501)
Q Consensus 158 ~lf~~M~~~-gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~-----M~~~~~~p~~~t~~~i~~~f~~ 219 (501)
++++.-... +..-|..-|..+|+...+.|+..-...+..+ +...++..++.....+...|..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 998877655 4556888999999999999998766665553 3556778888888888888853
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.05 E-value=8.1 Score=41.61 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=98.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCC--------CHHHHHH
Q 010790 52 QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAASKN--------DGDYAFV 122 (501)
Q Consensus 52 ~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd-~~t~~~li~~~~~~g--------~~~~A~~ 122 (501)
...+.|...|...+.+..... . ...+...+|.++|++..+. .|| ...|..+..+|.... ++..+.+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~--~-~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLN--S-GDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHh--c-CCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445677889999988543321 0 0122578899999998774 455 334444333332221 2233344
Q ss_pred HHHHhHhhc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 123 LIKRMNNEF-NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 123 l~~~M~~~~-gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
..... ... ....+...|.++-..+...|+.++|...+++....+ |+...|..+-..|...|+.++|.+.+.+-..
T Consensus 406 ~~~~a-~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~- 481 (517)
T PRK10153 406 ELDNI-VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN- 481 (517)
T ss_pred HHHHh-hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 44333 121 233345777777556667899999999999998765 7888999999999999999999999987643
Q ss_pred CCCCCHHHHHH
Q 010790 202 VRCVNEETGKI 212 (501)
Q Consensus 202 ~~~p~~~t~~~ 212 (501)
+.|...|+-.
T Consensus 482 -L~P~~pt~~~ 491 (517)
T PRK10153 482 -LRPGENTLYW 491 (517)
T ss_pred -cCCCCchHHH
Confidence 3566556543
No 140
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.05 E-value=5.8 Score=41.31 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=123.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010790 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (501)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~ 113 (501)
.-..|++.+.++|....+ =|+-..+||.-+=-+++.-. .++.++..|.+++..- -|.-|-.-+|-..|..=.+
T Consensus 377 le~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~fe----IRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFE----IRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHH----HHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHH
Confidence 356889999999998887 35556789988866666532 1222678899998865 4677888999999999999
Q ss_pred CCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-LSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g-v~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
.++++.+..+++.. ...+ +-+..+|.-.-.-=-..||.|.|..+|+-..+.. +..-+..|-+.|+-=...|..++|.
T Consensus 450 L~efDRcRkLYEkf-le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 450 LREFDRCRKLYEKF-LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HhhHHHHHHHHHHH-HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 99999999999998 5543 1355677665555567899999999999887763 3334567888888888899999999
Q ss_pred HHHHHHHhC
Q 010790 193 QYLQKLRST 201 (501)
Q Consensus 193 ~ll~~M~~~ 201 (501)
.+++++.+.
T Consensus 528 ~LYerlL~r 536 (677)
T KOG1915|consen 528 ALYERLLDR 536 (677)
T ss_pred HHHHHHHHh
Confidence 999998765
No 141
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.97 E-value=4.3 Score=34.46 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=68.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 010790 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSNNVI--PNEASVTS 106 (501)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~---~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~--pd~~t~~~ 106 (501)
++-..|+.++|+.+|++....|.... ..-.++|. .+...| ++++|..+|++....... .+......
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 45567899999999999988887544 33344444 445555 899999999987764321 12222223
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~ 149 (501)
+.-++...|+.++|+.++-.. .. +++..|.--|..|+.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~-la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEA-LA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HH----HHHHHHHHHHHHHHh
Confidence 334667789999999888665 22 344577777777754
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.80 E-value=7 Score=42.08 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=95.5
Q ss_pred CCHhHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhCCCCCCCChhhHHHHHHHHHHHH
Q 010790 21 NPETNFLINLQSCTK--SK---DLTTAISLYESAHSQNLRLS-LHHFNALLYLC-SDSATDPSSKDSALRHGFRVFDQML 93 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k--~g---~~~~A~~lf~~m~~~gv~p~-~~ty~~LL~~c-~~~~~~~~~k~~~~~~a~~lf~~M~ 93 (501)
.....|...+.+... .+ +...|..+|++..+.. |+ ...|..|..++ ...+.+. .....+..+.+......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~-~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQP-LDEKQLAALSTELDNIV 411 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhh
Confidence 334577777777543 22 3779999999988653 43 34455442222 2222221 11223445555555433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010790 94 SN-NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172 (501)
Q Consensus 94 ~~-g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~ 172 (501)
.. ....+...|.++.-.+...|++++|...+++. ... .|+...|..+-..|...|+.++|.+.|++-... .|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 32 23345567877766777789999999999999 544 378889999999999999999999999886543 4444
Q ss_pred HHH
Q 010790 173 QEI 175 (501)
Q Consensus 173 ~t~ 175 (501)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
No 143
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.79 E-value=3 Score=43.05 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH-HHhCCCCCCHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQ-MLSNNVIPNEA 102 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~g-v~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~-M~~~g~~pd~~ 102 (501)
.|-..|+.-.|..-++.|..+|-+..+.| +.++.+.++++|..++... ..-|..+|+- |+. -||..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d---------~~ta~~ifelGl~~---f~d~~ 466 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD---------RATAYNIFELGLLK---FPDST 466 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC---------cchHHHHHHHHHHh---CCCch
Confidence 56778888888899999999999999999 6889999999999766664 5568888875 332 24443
Q ss_pred H-HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 103 S-VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 103 t-~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
. -+-.+..+.+.++-+.|..+|+.-+.+ +.-+ ...|..||+-=...|++..|..+-+.|... .|-+.+-..+.
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 3 466778888999999999999965221 2223 478999999999999999999998888764 67766666666
Q ss_pred HHHHh
Q 010790 180 KVSAE 184 (501)
Q Consensus 180 ~~~~~ 184 (501)
+-|.-
T Consensus 543 Sry~i 547 (660)
T COG5107 543 SRYAI 547 (660)
T ss_pred HHHhh
Confidence 66654
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.72 E-value=3.7 Score=40.07 Aligned_cols=105 Identities=10% Similarity=0.000 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLMG--LSLEQQE 174 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g--v~pd~~t 174 (501)
...|...+..+.+.|++++|...|+.+.... |+. ..+--+-..|...|+.++|...|+.+...- -......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777777677899999999999994333 654 355566678889999999999999997641 1112334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 175 ~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
+--+...+...|+.++|..+|+.+.+. .|+....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHH
Confidence 444566677899999999999998776 5665543
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.46 E-value=4.9 Score=40.36 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
....|.++-.+. -.||..-|-..|++++..++|++-..+... + -+..-|-+.+.+|.+.|....|..+.
T Consensus 192 ~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s--k-----KsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 192 QEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS--K-----KSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred CHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C-----CCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 455555553333 457777777778888888887765554221 1 13467777888887877777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010790 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196 (501)
Q Consensus 161 ~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~ 196 (501)
..+ ++..-+..|.+.|++.+|.+.-.
T Consensus 261 ~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 261 PKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 552 23566677777777777755433
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.42 E-value=3.7 Score=36.73 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP--RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P--~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
....|..+...+...|++++|...|.+. ....-.| ...+|..+=..|...|+.++|...++...... .....++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEA-MRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3556677778888899999999999988 4332112 12477888888999999999999998887642 223455666
Q ss_pred HHHHHH-------hcCChHHHHHHHHH
Q 010790 178 LLKVSA-------ETGRVEKVYQYLQK 197 (501)
Q Consensus 178 Li~~~~-------~~g~~~~a~~ll~~ 197 (501)
+...+. +.|+.+.|...+.+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 666666 77787766666654
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.09 E-value=0.85 Score=33.59 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 146 CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 146 ~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
.+.+.|++++|.++|+...... .-+...|..+-..+.+.|+.++|..+|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666666665543 1144455555556666666666666666654
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.00 E-value=1 Score=48.90 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=59.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010790 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAA 112 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~ 112 (501)
..++..+..|+.+.+.+.++.+.. .-|..+-..|+..+ +++.|.++|-+- -.++-.|.+|.
T Consensus 742 ai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~--------dfe~ae~lf~e~---------~~~~dai~my~ 802 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKG--------DFEIAEELFTEA---------DLFKDAIDMYG 802 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccch--------hHHHHHHHHHhc---------chhHHHHHHHh
Confidence 344455566666666666655421 12333333555555 788888887653 13566778888
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
+.|+|+.|.++-.+. .|-......|-+--.-.-+.|.+.+|.++|
T Consensus 803 k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888888888876665 232233344444333344455555554443
No 149
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.82 E-value=22 Score=38.68 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.+|+.--+.|.+.+.++-|..+|....+. .+-+...|.....+=...| -.+....+|.+.... ++-.+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg--------t~Esl~Allqkav~~-~pkae~l 586 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG--------TRESLEALLQKAVEQ-CPKAEIL 586 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHh-CCcchhH
Confidence 37777777888888888888888776653 2234455655555444444 567777777776654 3345666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
|-...+-+-..|+...|+.++.+. -...- -+...|-+.+.--..+.+++.|+.+|..... ..|++..|.--+..--
T Consensus 587 wlM~ake~w~agdv~~ar~il~~a-f~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQA-FEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHH-HHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHH
Confidence 777777777788888888888887 33321 2456777777778888888888888887655 4566666665555555
Q ss_pred hcCChHHHHHHHHHHHhC
Q 010790 184 ETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 184 ~~g~~~~a~~ll~~M~~~ 201 (501)
-.++.++|++++++-.+.
T Consensus 663 ~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS 680 (913)
T ss_pred HhhhHHHHHHHHHHHHHh
Confidence 567788888888776543
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.72 E-value=13 Score=35.75 Aligned_cols=168 Identities=10% Similarity=0.001 Sum_probs=106.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhCCCCCCCChhhHHHHHHHHHHHHhCC
Q 010790 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~---~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g 96 (501)
.+++..|..-.. +.+.|+.++|.+.|+++...--.+ ...-.+++. ++-+.+ +.++|...|++..+..
T Consensus 30 ~~~~~~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~--------~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 30 NPPSEIYATAQQ-KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLN 99 (243)
T ss_pred CCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC
Confidence 344456665544 456899999999999998754322 444444433 445555 7999999999998865
Q ss_pred CCCCHHHHHHHHHHHHh--C---------------CC---HHHHHHHHHHhHhhcCCCCChhhH------H---------
Q 010790 97 VIPNEASVTSVARLAAS--K---------------ND---GDYAFVLIKRMNNEFNVVPRLRTY------D--------- 141 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~--~---------------g~---~~~A~~l~~~M~~~~gi~P~~~ty------~--------- 141 (501)
..-...-|.-.+.+.+. . .+ ...|+..|++++... |+..-. -
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHH
Confidence 55444566666666542 1 12 235666676663333 544211 1
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 142 ---PALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 142 ---~lI~~~~~~g~~~~A~~lf~~M~~~--gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.+-.-|.+.|....|..=|+.+.+. +-.......-.|+.+|...|..++|......+..
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1122377888888888888888765 3444556777788888888888888777766543
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=14 Score=35.61 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 010790 36 SKDLTTAISLYESAHS---QN-LRLSLHH-FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVAR 109 (501)
Q Consensus 36 ~g~~~~A~~lf~~m~~---~g-v~p~~~t-y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~-pd~~t~~~li~ 109 (501)
..+.++.++++.+|.. .| ..++..+ |--++.+....+ +.+.|...++.+...... +-+.-+.+|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~--------~~~lAq~C~~~L~~~fp~S~RV~~lkam-- 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTG--------RDDLAQKCINQLRDRFPGSKRVGKLKAM-- 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHhCCCChhHHHHHHH--
Confidence 3467777777777762 34 5566555 333333333334 577788888887766421 112222222
Q ss_pred HHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010790 110 LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189 (501)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~ 189 (501)
.+-..|+.++|.++++.. .+.. +.|.++|--=|...-..|.--.|.+-..+..+. +..|...|--|-..|...|+++
T Consensus 95 ~lEa~~~~~~A~e~y~~l-L~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESL-LEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHhhchhhHHHHHHHH-hccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 234478888888888888 4433 456677765555555566655666655555443 3458888888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 010790 190 KVYQYLQKLRSTVRCVNEE 208 (501)
Q Consensus 190 ~a~~ll~~M~~~~~~p~~~ 208 (501)
+|.-.+++|... .|-..
T Consensus 172 kA~fClEE~ll~--~P~n~ 188 (289)
T KOG3060|consen 172 KAAFCLEELLLI--QPFNP 188 (289)
T ss_pred HHHHHHHHHHHc--CCCcH
Confidence 888888888754 45443
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.45 E-value=20 Score=37.49 Aligned_cols=128 Identities=9% Similarity=0.021 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-
Q 010790 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL- 137 (501)
Q Consensus 59 ~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~- 137 (501)
.-|..-|..+-.. .+++|+..++.+... .+-|..-+......+.+.++..+|.+.++.++ ...|+.
T Consensus 308 a~YG~A~~~~~~~---------~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~ 374 (484)
T COG4783 308 AQYGRALQTYLAG---------QYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSP 374 (484)
T ss_pred HHHHHHHHHHHhc---------ccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCcc
Confidence 4455555544443 588899999997764 33466667777888999999999999999993 234763
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
...-.+=.+|.+.|+..+|..+++.-... .+-|...|..|-.+|...|+..++..-.-++-.
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44455567889999999999999887654 344788999999999999999988877766644
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.42 E-value=7.8 Score=34.53 Aligned_cols=89 Identities=11% Similarity=-0.153 Sum_probs=52.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF-CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~-~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~ 185 (501)
+-..+...|++++|..+|... -. +.|....|--=+.++ -..|++++|...|........ -|...+-.+-.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L-~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLL-TI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 333445577777777777766 22 234444443333333 345777777777777665553 2556666666677777
Q ss_pred CChHHHHHHHHHHH
Q 010790 186 GRVEKVYQYLQKLR 199 (501)
Q Consensus 186 g~~~~a~~ll~~M~ 199 (501)
|+.+.|.+-|+.-.
T Consensus 117 G~~~~A~~aF~~Ai 130 (157)
T PRK15363 117 DNVCYAIKALKAVV 130 (157)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777776665443
No 154
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.98 E-value=4 Score=42.97 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=86.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
.|+...+.++..+-+.|-++.|+.+-..-. .-| .+..+.| +++.|.++-.+. .+
T Consensus 293 i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg--------~L~~A~~~a~~~------~~ 346 (443)
T PF04053_consen 293 IPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLG--------NLDIALEIAKEL------DD 346 (443)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT---------HHHHHHHCCCC------ST
T ss_pred CChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcC--------CHHHHHHHHHhc------Cc
Confidence 345566777777777777777776654322 112 2333334 677777664443 47
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
...|..|-..+.+.|+++.|.+.|... + -|..|+--|.-.|+.++-.++-+.-..+| -+|..+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA-K---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh-c---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 778888888888888888888888887 3 35677777888888888777776666655 3666666
Q ss_pred HHHhcCChHHHHHHHHH
Q 010790 181 VSAETGRVEKVYQYLQK 197 (501)
Q Consensus 181 ~~~~~g~~~~a~~ll~~ 197 (501)
++.-.|+.++..++|.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 77777877777766654
No 155
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.89 E-value=10 Score=43.80 Aligned_cols=162 Identities=15% Similarity=0.052 Sum_probs=101.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC----CCC-CCH
Q 010790 31 QSCTKSKDLTTAISLYESAHSQNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----NVI-PNE 101 (501)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~gv~p~~----~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~----g~~-pd~ 101 (501)
..+...|++++|...+++..+.--..+. ...+.+-..+...| ++++|...+.+.... |-. +-.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--------~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--------ELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3456789999999999987753111121 12222222444455 799999998887642 111 123
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHh---hcCCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--C
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVV--P-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSL--E 171 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~--P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~--gv~p--d 171 (501)
.+++.+...+...|++++|...+++... ..+.. | ....+..+-..+...|+++.|...+++.... ...+ .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 4556667778889999999999887621 12221 1 1233444445566789999999998876542 1112 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 172 QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 172 ~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
...+..+...+...|+.+.|.+.+.....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555677789999999999888754
No 156
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.85 E-value=13 Score=40.22 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=92.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010790 31 QSCTKSKDLTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (501)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~-gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~ 109 (501)
....+.|++......|+..... -+.--.-.|...|.-....+ .++-+..+|+.-.+ .+...-+-.|.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~--------lPets~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG--------LPETSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC--------ChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 3445667777777777775543 22222234666666555555 56678888887654 33344677888
Q ss_pred HHHhCCCHHHHHHHHHHhHhhc-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH--HHHHHHHH
Q 010790 110 LAASKNDGDYAFVLIKRMNNEF-----NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL--SLEQ--QEIAALLK 180 (501)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~-----gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv--~pd~--~t~~~Li~ 180 (501)
-++..+++++|.+.+...+... .-+.+.--|.-+-+-.+++-+.-.-..+-.-| ..|+ -+|. ..|++|.+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii-R~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII-RGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH-HhhcccCcHHHHHHHHHHHH
Confidence 8888899998888888763110 11122333444433333333322222222111 2222 2333 36777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 181 VSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 181 ~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
.|.+.|.+++|..+|.+-.........
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrD 283 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRD 283 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhh
Confidence 777777777777777776665555444
No 157
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=24 Score=37.12 Aligned_cols=152 Identities=9% Similarity=0.007 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010790 34 TKSKDLTTAISLYESAHSQNLRLSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAA 112 (501)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~gv~p~~-~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~ 112 (501)
.-.|+..+|...|+......-.++. +.+-++ +|.... +.++....|+.-...... |.-+|-.--.++.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~--~y~d~~--------~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAA--AYADEN--------QSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRF 405 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHH--HHhhhh--------ccHHHHHHHHHHHhcCCC-CCchhHhHHHHHH
Confidence 3468888999999988876544443 333333 444444 667788888877664433 3345555566666
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a 191 (501)
-.++.++|..=|++. .. +.|. ...|--+-.+.-|.+.+++++..|++.+.+ ++-....||-.-..+...+++++|
T Consensus 406 lL~q~e~A~aDF~Ka-i~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKA-IS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHH-hh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 678899999999887 43 3343 344444444455788999999999998775 333556888888999999999999
Q ss_pred HHHHHHHHh
Q 010790 192 YQYLQKLRS 200 (501)
Q Consensus 192 ~~ll~~M~~ 200 (501)
.+.|+.-++
T Consensus 482 ~k~YD~ai~ 490 (606)
T KOG0547|consen 482 VKQYDKAIE 490 (606)
T ss_pred HHHHHHHHh
Confidence 999987654
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=90.69 E-value=18 Score=35.51 Aligned_cols=183 Identities=11% Similarity=0.095 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh----C
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----N 95 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~----gv~p~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~----~ 95 (501)
.|+..-..|-..|++++|.+.|....+- +-+.. ...|......+.+. ++++|.+.|++-.. .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---------~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---------DPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHHHhc
Confidence 7888888899999999999999886532 21111 12233333344444 47777777776554 2
Q ss_pred CCCCC--HHHHHHHHHHHHhC-CCHHHHHHHHHHhHh---hcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 96 NVIPN--EASVTSVARLAASK-NDGDYAFVLIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 96 g~~pd--~~t~~~li~~~~~~-g~~~~A~~l~~~M~~---~~gi~P~--~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
| .|+ ..++..+-..|-.. |+++.|.+.|.+... ..+ .+. ..++.-+...+.+.|++++|.++|++....-
T Consensus 108 G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 G-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred C-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 2 222 23566777778777 899999999987621 122 111 2455677778999999999999999987653
Q ss_pred CC-----CCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHhcc
Q 010790 168 LS-----LEQQ--EIAALLKVSAETGRVEKVYQYLQKLRST--VRCVNE--ETGKIIEDWFSG 219 (501)
Q Consensus 168 v~-----pd~~--t~~~Li~~~~~~g~~~~a~~ll~~M~~~--~~~p~~--~t~~~i~~~f~~ 219 (501)
+. .+.. .+.++| ++...|+...|...|++.... ++..+. .+...|+.+|..
T Consensus 186 l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 32 1222 223333 555689999999999998654 343343 344666666644
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=90.67 E-value=1.3 Score=48.16 Aligned_cols=166 Identities=15% Similarity=0.152 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
.--.+...+...|-...|..+|+.. ..|-.+|.+|+..|+..+|.++.....++ .||..-|..|.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3455677888899999999999888 36889999999999999999988777763 78999999999998
Q ss_pred HhcCChHHHHHHHHHHHhC-CC-----CCCHHHHHHHHHHh-ccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceE
Q 010790 183 AETGRVEKVYQYLQKLRST-VR-----CVNEETGKIIEDWF-SGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 255 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~-~~-----~p~~~t~~~i~~~f-~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~ 255 (501)
-.--.+++|.+++++-... .. ..+..-++.....+ .++ .
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl----------------------------------~ 513 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSL----------------------------------E 513 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHh----------------------------------h
Confidence 8888899999999864322 11 11111222222222 111 1
Q ss_pred EEEeeecCCCCCCCCCCc-------ccc----cCCCHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHc
Q 010790 256 VKRGSVDESGKCCSCGDQ-------LAC----VDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (501)
Q Consensus 256 v~~~~v~~~gkCg~~~~a-------l~~----~~l~~~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~~~ 314 (501)
..+-.+..+-.||+|.-+ ... ..+.|..+..|++.=..+...+..++++..|++=++.+
T Consensus 514 ~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 514 INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 111122222233443322 222 35677888899999999999999999999999988853
No 160
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.08 E-value=32 Score=37.51 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
.|--....+-.+||+.+|..++++.-+.+-. +.-.|-+-+.+-.... .+++|+.+|.+-.. ..|++..|
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~--------e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFEND--------ELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccc--------cHHHHHHHHHHHhc--cCCcchhh
Confidence 3344444555678888888888877665432 4455555555555555 78888888887654 56777777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT-YDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVS 182 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t-y~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~ 182 (501)
.--++.---.+..++|.+++++..+.. |+-.- |-.+=+-+-+.++++.|.+.|..=.. .-| ....|-.|-+.=
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLE 729 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHH
Confidence 777777777888888888887763322 44322 22222223334444444444322111 112 222344444443
Q ss_pred HhcCChHHHHHHHHHHH
Q 010790 183 AETGRVEKVYQYLQKLR 199 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~ 199 (501)
-+.|.+-+|..+|++-+
T Consensus 730 Ek~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRAR 746 (913)
T ss_pred HHhcchhhHHHHHHHHH
Confidence 44445555555555443
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.07 E-value=2.5 Score=31.76 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 145 FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 145 ~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
..|.+.+++++|.++++.+...+- .+...|...-..+.+.|++++|.+.|+...+. .|+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 346666777777777777665421 14445555666666777777777777766643 4444443
No 162
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.82 E-value=8.9 Score=43.77 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCC----------CCCCCChhhHHHHHHHHHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSA----------TDPSSKDSALRHGFRVFDQM 92 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~g-v~p~~~ty~~LL~~c~~~~----------~~~~~k~~~~~~a~~lf~~M 92 (501)
..+-.||..|...+++++|..+.++..+.. -.+..+-|..+| +.+.+ ++...+.....-+..++..|
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l--~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGIL--SLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHH--HHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 488999999999999999999999655432 233334444442 33322 11111122232233333344
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 93 LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 93 ~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
... .-+...+-.+..+|-+.|+.++|..+++++ .+.. +-|...-|.+-..|+.. ++++|.+++......
T Consensus 110 ~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~-L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 110 LLY--GENKLALRTLAEAYAKLNENKKLKGVWERL-VKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHH-HhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 332 123345566777777778888888888877 5554 24556667777777777 788887777665543
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.69 E-value=8.2 Score=37.93 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCC-----CChh-hHHHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLS----NNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV-----PRLR-TYDPALFCFCE 149 (501)
Q Consensus 81 ~~~~a~~lf~~M~~----~g~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~-----P~~~-ty~~lI~~~~~ 149 (501)
++++|++.|.+-.+ .|.. --..++..+...+++.|++++|.++|+++ ...-+. .+.. .|-..+-++..
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~-~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV-AKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-HHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHHH
Confidence 78889988887554 2311 11345678888999999999999999998 543322 2222 22233446667
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCh
Q 010790 150 NLEAEKAYEVEEHMGLM--GLSL--EQQEIAALLKVSAETGRV 188 (501)
Q Consensus 150 ~g~~~~A~~lf~~M~~~--gv~p--d~~t~~~Li~~~~~~g~~ 188 (501)
.||...|.+.|+..... ++.. .......||.+|- .|+.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~ 250 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDV 250 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-C
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCH
Confidence 89999999999998754 2322 2345556666663 3443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.58 E-value=1.8 Score=31.80 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=36.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~ 165 (501)
+...+...|++++|...|++. .+.. | +...+..+=..+...|+.++|..+|++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~-l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA-LKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH-HCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777888877777 3332 4 335555555667777778777777777654
No 165
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.24 E-value=16 Score=32.89 Aligned_cols=133 Identities=13% Similarity=0.219 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Q 010790 44 SLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKN--DGDYAF 121 (501)
Q Consensus 44 ~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g--~~~~A~ 121 (501)
+..+.+.+.+++|+...|..||.++.+.+ . ...+.++...++-+|.......+-.+.... -...|+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~--------~----~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~l 82 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG--------Q----FSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------C----HHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHH
Confidence 44555667889999999999999888887 3 455566677777777766665554333321 123444
Q ss_pred HHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 122 VLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
+++.++ . ..+..++..+...|++-+|.++-...... +...-.-++.+-.+.++...-..+|+.....
T Consensus 83 DMLkRL-~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 83 DMLKRL-G--------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHh-h--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444 2 15677788888899999998887664322 2223355677777777766666666655543
No 166
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.43 E-value=4.7 Score=44.07 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
.+.+|+.+++.++..... ..-|..+..-|+..|+++.|.++|.+- . -++-.|.+|.++|.++.|+++-
T Consensus 747 ew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~-~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA-D---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc-c---------hhHHHHHHHhccccHHHHHHHH
Confidence 678899999988765332 224667888999999999999999877 2 3578899999999999999987
Q ss_pred HHH
Q 010790 161 EHM 163 (501)
Q Consensus 161 ~~M 163 (501)
++.
T Consensus 815 ~e~ 817 (1636)
T KOG3616|consen 815 EEC 817 (1636)
T ss_pred HHh
Confidence 664
No 167
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=40 Score=36.30 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H-HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLH-H-FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~-t-y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
..+=+-|+.+.+.|++++|......+...+ ||.. . +.-++. ..+.+ .+++|+.+.+. .+. .
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvVa-lIq~~--------ky~~ALk~ikk---~~~---~ 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVA-LIQLD--------KYEDALKLIKK---NGA---L 75 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhh-hhhhh--------HHHHHHHHHHh---cch---h
Confidence 455567888999999999999999998776 4322 2 222222 22223 68888855432 211 1
Q ss_pred HHHHH--HHHHHH--hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010790 102 ASVTS--VARLAA--SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (501)
Q Consensus 102 ~t~~~--li~~~~--~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~ 169 (501)
.+++. +=++|| +.+..++|+..++.. ... +..+-..=-.-+-+.|++++|+.+|+++.+.+..
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGL-DRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcc-ccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 22222 356666 488999999888855 221 1112222233456899999999999999877543
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.41 E-value=2.5 Score=32.33 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhh---cC-CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNE---FN-VVPR-LRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~---~g-i~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
+|+.+-..|...|++++|+..|++.... .| -.|+ ..+++.+=..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666666666666666655111 11 0011 23444444444455555555554443
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=16 Score=35.37 Aligned_cols=161 Identities=7% Similarity=-0.007 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVA 108 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li 108 (501)
.|.-+-...-.+..+++++.=.. ...+.++...-..+ .+.-...++.++.+...+-+.+....|.
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~k--------Ey~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMK--------EYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcch--------hhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 34444444444666667664322 22333333222222 4555677888888877677888888999
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHH
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC-----FCENLEAEKAYEVEEHMGLMGLSLEQQEIA--ALLKV 181 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~-----~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~--~Li~~ 181 (501)
+.-.+.||.+.|...|+.. .+..-..|-.+++.++.. |.-..+.-.|...|.+++..+-. |...-| +|+-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~v-ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcll 297 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLL 297 (366)
T ss_pred HHHHhcccHHHHHHHHHHH-HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHH
Confidence 9999999999999999977 433222455566555443 34456777888888888766422 333333 34444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 182 SAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
| .|+..+|++.+..|... .|...+-
T Consensus 298 Y--lg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 298 Y--LGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred H--HHHHHHHHHHHHHHhcc--CCccchh
Confidence 4 67788888888888765 4444443
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.13 E-value=12 Score=31.77 Aligned_cols=87 Identities=13% Similarity=-0.007 Sum_probs=46.4
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhcCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHH-HHHHHH
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE---QQEIA-ALLKVS 182 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd---~~t~~-~Li~~~ 182 (501)
.++-..|+.++|..+|++- ...|+.... ..+-.+=..|-..|+.++|..++++.... .|+ ..... .+--++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~A-l~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRA-LAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445566777777777766 555654332 33334444555667777777777665543 122 11111 112244
Q ss_pred HhcCChHHHHHHHHHH
Q 010790 183 AETGRVEKVYQYLQKL 198 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M 198 (501)
...|+.++|++++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5567777776666543
No 171
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.12 E-value=28 Score=34.14 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCCh-------hhHHHHHHHHHH---HHhCCCC---CC
Q 010790 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKD-------SALRHGFRVFDQ---MLSNNVI---PN 100 (501)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~-------~~~~~a~~lf~~---M~~~g~~---pd 100 (501)
.+.||.+.|..+|.+....-...++...-.|-..|-..|.+.+.+. .-+++|.++++. |...+.. .-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4679999999999987754312222222222222222221111111 124556666644 3222111 22
Q ss_pred HHHHHHHHHHHHhCCCHH---HHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 101 EASVTSVARLAASKNDGD---YAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~---~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
..+...++++|...+..+ +|..+++.+..+.+-+ ..+|---|..+.+.++.+.+.+++.+|...- .-.+..+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 456778888888877655 5677777773333322 3455455666666899999999999998762 213456666
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHhCCCCCCHH
Q 010790 178 LLKVSAE--TGRVEKVYQYLQKLRSTVRCVNEE 208 (501)
Q Consensus 178 Li~~~~~--~g~~~~a~~ll~~M~~~~~~p~~~ 208 (501)
.+..+-+ ......|...+.++....+.|++.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 6666532 233467888888888877787775
No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.09 E-value=27 Score=40.28 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC--
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLR--L-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-- 95 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~----~gv~--p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~-- 95 (501)
.++.+-..+...|++++|...+++..+ .+.. + ....+..+-......| ++++|...+++....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G--------~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA--------RLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHhHHhhh
Confidence 334455567788999999998887653 2221 1 1222333322333335 789998888876542
Q ss_pred CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc-CCCCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 96 NVIP--NEASVTSVARLAASKNDGDYAFVLIKRMNNEF-NVVPRLRTY-----DPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 96 g~~p--d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P~~~ty-----~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
...+ ...++..+...+...|+.++|...+.+. ... .-......+ ...+..+...|+.+.|..++.......
T Consensus 605 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 605 NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL-ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 1112 2344555677888899999999998887 432 110111111 112244556899999999877654322
Q ss_pred CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 168 LSLE---QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 168 v~pd---~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
.... ...+..+..++...|+.++|..++.+...
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 11244566678889999999999988755
No 173
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.53 E-value=17 Score=31.17 Aligned_cols=124 Identities=17% Similarity=0.075 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHH
Q 010790 62 NALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141 (501)
Q Consensus 62 ~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~ 141 (501)
..++..+...+ .......+++.+...+. .+....|.+|..|++.. ....++.+..- ++.....
T Consensus 11 ~~vv~~~~~~~--------~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~~-------~~~yd~~ 73 (140)
T smart00299 11 SEVVELFEKRN--------LLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDNK-------SNHYDIE 73 (140)
T ss_pred HHHHHHHHhCC--------cHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHhc-------cccCCHH
Confidence 34566666555 68888999999888764 67889999999999864 34444444421 3455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET-GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 142 ~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~-g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
.++..|-+.+-.+.|..++..+.. |...++.+... ++.+.|.+.+.+ .-++..+..++..+
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~ 135 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHH
Confidence 788888888888888888887732 34444555554 778888887775 12455665555544
No 174
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.36 E-value=6.2 Score=38.71 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS-----TVRCVNEETGKI 212 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~-----~~~~p~~~t~~~ 212 (501)
.++..++..+...|+.+.+.+.++++....- -++..|..||.+|.++|+...|+..|+.|.. -|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4667788889999999999999999887643 3888999999999999999999999988755 689999988877
Q ss_pred HHHHhcc
Q 010790 213 IEDWFSG 219 (501)
Q Consensus 213 i~~~f~~ 219 (501)
....++.
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 7776543
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.19 E-value=14 Score=36.07 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC
Q 010790 58 LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (501)
Q Consensus 58 ~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (501)
...|..-+.+....+ ++++|...|+.+........ ...+--+-..|...|+.++|...|..+.... |
T Consensus 143 ~~~Y~~A~~l~~~~~--------~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P 211 (263)
T PRK10803 143 NTDYNAAIALVQDKS--------RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---P 211 (263)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---C
Confidence 345666666544445 79999999999987543211 2355677888999999999999999994333 4
Q ss_pred Ch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 136 RL----RTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 136 ~~----~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
+. ..+--+...|...|+.++|..+|+.....
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 22333344567899999999999888764
No 176
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.10 E-value=5.7 Score=38.92 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL-----MGLSLEQQEIA 176 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~-----~gv~pd~~t~~ 176 (501)
.+++.++..+...|+.+.+.+.+++. .... +-+...|-.+|.+|.+.|+...|...|+.+.. .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~L-i~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERL-IELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH-HhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35678889999999999999999998 4432 24789999999999999999999999998865 48999988888
Q ss_pred HHHHHH
Q 010790 177 ALLKVS 182 (501)
Q Consensus 177 ~Li~~~ 182 (501)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777663
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=36 Score=34.37 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNL----RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv----~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
.++=.-......+.-|...|.-.-+++. -|...+..+-+-++. .+++++-.+..+..-...-|.+
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~-----------qFddVl~YlnSi~sYF~NdD~F 395 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF-----------QFDDVLTYLNSIESYFTNDDDF 395 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCcchh
Confidence 3333334444455666666655444443 344444444333322 4777777777776665566666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF-CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL-K 180 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~-~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li-~ 180 (501)
.|| +..+++..|+..+|+++|-.+ ....+ -|..+|-.++. +|.+++..+.|+.+|-.|.. ..+..+.--|| .
T Consensus 396 n~N-~AQAk~atgny~eaEelf~~i-s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 396 NLN-LAQAKLATGNYVEAEELFIRI-SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIAN 469 (557)
T ss_pred hhH-HHHHHHHhcChHHHHHHHhhh-cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHH
Confidence 665 677888888888888888777 44333 35667766664 77888888888887755532 22333333333 3
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 010790 181 VSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 181 ~~~~~g~~~~a~~ll~~M~~ 200 (501)
-|-+.+.+--|.+.|+.+..
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHc
Confidence 45556665555555555543
No 178
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=86.93 E-value=32 Score=39.49 Aligned_cols=118 Identities=11% Similarity=0.037 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHH---HHHHc--CCHH
Q 010790 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF---CFCEN--LEAE 154 (501)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~---~~~~~--g~~~ 154 (501)
|..++|.++|+++.+.. .-|..+.|-+.-.|+.. ++++|++++... ...-+ +..-|+.+.. -+|.+ -+++
T Consensus 130 g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-V~~~i--~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 130 NENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-IYRFI--KKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-HHHHH--hhhcchHHHHHHHHHHhcCcccch
Confidence 38899999999998876 45788899999999999 999999998887 33211 2223333322 11111 1222
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010790 155 KAYEVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 155 ~A~~lf~~M~~~-gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~ 202 (501)
.-..+.+.+... |..--..++-.|-..|-...+++++..+|+...+..
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 223333333322 323334456666677778888888888888877653
No 179
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.88 E-value=38 Score=36.26 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhHh-hcCCCCChhh----HHHHHHHHHHcCCHH
Q 010790 81 ALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNN-EFNVVPRLRT----YDPALFCFCENLEAE 154 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~M~~-~~gi~P~~~t----y~~lI~~~~~~g~~~ 154 (501)
.++.|.+.|.+-.. +-| |....+-+--.+...+.+.+|..+|..... ...+.+...+ ++.|=.+|-+.+..+
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 57778888876543 444 566666666666678899999999987621 1112222223 455556788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 155 ~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+|...|+.-.... +-+..++.++--.|...|+++.|.+.|++-. .+.|+..+...++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999998877653 3378899999999999999999999999854 6688887776666544
No 180
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=19 Score=38.48 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHH
Q 010790 81 ALRHGFRVFDQMLSN----N--VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~----g--~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~ 154 (501)
.+.+|..+|..-... + ...-+.+++.|=.+|-+.+..++|...|+.. .. -.+-+..||.++=-.|...|.++
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a-L~-l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA-LL-LSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH-HH-cCCCchhHHHHHHHHHHHhcChH
Confidence 577888888876521 1 1124557889999999999999999999987 32 23347788888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010790 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (501)
Q Consensus 155 ~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~ 184 (501)
.|.+.|..-. .+.|+..+-..|+..+..
T Consensus 507 ~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 507 KAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 9999998865 468888888888876544
No 181
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.96 E-value=2.2 Score=32.55 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGLM----GL-SLE-QQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~~----gv-~pd-~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
.+|+.+=..|...|+.++|...|++.... |- .|+ ..+++.|-..|...|+.++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788888999999999999999887643 21 122 4578888889999999999999998753
No 182
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.94 E-value=20 Score=35.26 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=97.0
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 010790 36 SKDLTTAISLYESAHS-QNLRLSLHHFNALLYLCSD-SATDPSSKDSALRHGFRVFDQMLS-NNVIPNEASVTSVARLAA 112 (501)
Q Consensus 36 ~g~~~~A~~lf~~m~~-~gv~p~~~ty~~LL~~c~~-~~~~~~~k~~~~~~a~~lf~~M~~-~g~~pd~~t~~~li~~~~ 112 (501)
+..+.+|+.+|+...- ..+--|...-..||+.... ..- .+..-.++.+.+.. .|..++..+...+|..++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-------~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-------KLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-------chhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 3456788888884332 3466677777778875544 221 23334455555543 456788888999999999
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH-----MGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~-----M~~~gv~pd~~t~~~Li~~~ 182 (501)
..++|..-+++++.-....+-.-|.+-|...|..-...||..-...+.++ +.+.++..+...-.+|-+.+
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999999999988722324556889999999999999999988877655 34456665655444444333
No 183
>PLN02789 farnesyltranstransferase
Probab=85.41 E-value=43 Score=33.65 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLH-HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~-ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.+..+-..+.+.+..++|+.+++++.+.+ |+.. .|+.-=..+...+ ..++++++.++.+.....+ +..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~-------~~l~eeL~~~~~~i~~npk-nyqa 108 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALD-------ADLEEELDFAEDVAEDNPK-NYQI 108 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcc-------hhHHHHHHHHHHHHHHCCc-chHH
Confidence 55666677788899999999999987643 3322 2222211222221 0478899999998876443 4456
Q ss_pred HHHHHHHHHhCCCH--HHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDG--DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 104 ~~~li~~~~~~g~~--~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
|+..--.+.+.|+. ++++.+++.| ....- -|..+|+.---.+.+.|+.++|.+.++.+.+.+.. +...|+-..-.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~ka-l~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~v 185 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKI-LSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFV 185 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHH-HHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHH
Confidence 77655555666653 6788888888 44322 35677887777888889999999999999988755 66678777666
Q ss_pred HHhc
Q 010790 182 SAET 185 (501)
Q Consensus 182 ~~~~ 185 (501)
+.+.
T Consensus 186 l~~~ 189 (320)
T PLN02789 186 ITRS 189 (320)
T ss_pred HHhc
Confidence 5544
No 184
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=85.40 E-value=61 Score=35.34 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-C--C----------------------------CCC
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD-S--A----------------------------TDP 75 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~-~--~----------------------------~~~ 75 (501)
-+.-+.+.+.+++++|..+|..+...+ ||.+-|.-.+..|.. . + +.+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc
Confidence 445566888999999999999998764 787887777664331 1 1 011
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhH---hhcC----------CCCChh--hH
Q 010790 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN---NEFN----------VVPRLR--TY 140 (501)
Q Consensus 76 ~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~---~~~g----------i~P~~~--ty 140 (501)
....+..-.++..+.+.|+++ ++..+.+.|-.-...+--.++.-++. ...| -+|... |+
T Consensus 301 ---eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 301 ---EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred ---chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 112233445566666777764 45555555544333332223333321 1111 134443 44
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE-IAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 141 ~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t-~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
--++..|-+.|+++.|.+..+.-..+ .|+.+. |-+=-+.+..+|+.++|..++.+-++-
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 56777888999999999999887754 565543 333347788899999999999887653
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.39 E-value=11 Score=39.25 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR----TYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~----ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
.+...++.+-.+|.+.|++++|+..|++. . .+.|+.. +|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rA-L--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETA-L--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-H--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778899999999999999999999986 2 3347753 5899999999999999999999887764
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.76 E-value=62 Score=36.59 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC
Q 010790 20 PNPETNFLINLQSCT--KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~--k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~ 97 (501)
..|+..|...+.+++ |.|+.++|..+.+.....+.. |..|..+|-..|...+ ..++|..+|++... .
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~--------~~d~~~~~Ye~~~~--~ 106 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG--------KLDEAVHLYERANQ--K 106 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh--------hhhHHHHHHHHHHh--h
Confidence 345556666666654 567777777777665544443 6666666666666666 67777777776543 3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH
Q 010790 98 IPNEASVTSVARLAASKNDGDY 119 (501)
Q Consensus 98 ~pd~~t~~~li~~~~~~g~~~~ 119 (501)
-|++.....+..+|++-++..+
T Consensus 107 ~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777665543
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=25 Score=34.09 Aligned_cols=110 Identities=5% Similarity=-0.008 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 83 RHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
+.-++++++=. ..+.+.+++..--.|.+.-.+.++.+. .+..-+-+..--..|...-.+.||++.|...|+.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44566666532 345667777777788888888888888 6654445667777777888888999999988887
Q ss_pred HHHCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHh
Q 010790 163 MGLMGLSLEQQEIAALLK-----VSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 163 M~~~gv~pd~~t~~~Li~-----~~~~~g~~~~a~~ll~~M~~ 200 (501)
.....-..|..+.+.++. .|.-..++..|...+.+...
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 665433344444544443 34446677777777766644
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.47 E-value=5.4 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcC-CHHHHHHHHHH
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENL-EAEKAYEVEEH 162 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g-~~~~A~~lf~~ 162 (501)
.+|..+-..+...|++++|+..|++. .+. .| +...|..+=.+|.+.| +.++|.+.|+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKA-IEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH-HHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444444455555555555555444 221 12 2233333333444444 34444444443
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.40 E-value=26 Score=39.42 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLA--ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~--~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~ 158 (501)
.+..|....+.+.+. .||. .|..+++++ .+.|+.++|..+++.. ...+.. |..|-..+-..|-+.|..++|..
T Consensus 24 qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 578888888887664 3553 455666665 4699999999999998 655553 88999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 010790 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190 (501)
Q Consensus 159 lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~ 190 (501)
+|++.... .|++.-...+..+|++.+.+.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 99998765 6788888899999999776544
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.25 E-value=14 Score=41.17 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 010790 25 NFLINLQ--SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA 72 (501)
Q Consensus 25 ~~n~lI~--~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~ 72 (501)
|-.+|++ .|.--|++++|++-..-++.. ..|..|-++|.+..
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~ 771 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTR 771 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhc
Confidence 4444554 366778888888777665543 56777777887765
No 191
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=84.10 E-value=4.6 Score=33.82 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHhcCCcceEEEecccccCC----CCCCcchHHHHHHHHhcCeEEeCCCCCCCcHH--HHHHHHhcCc
Q 010790 339 SVPQLDAVVKKLYERSGNKWPLVILHNKRLRS----LWENPSHRNLVEEWNEKGVLYMTPHGSNDDWY--WLYAAVKLRC 412 (501)
Q Consensus 339 ~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~t~~~~~DD~~--~l~aa~~~~~ 412 (501)
..+-|-+++=+|.-+ |++++|.||.-.... ....-++...++.|.+.+.+=|......-+|+ .+..|-+.++
T Consensus 8 pVk~L~eIll~Filr--GHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~G 85 (122)
T PF14626_consen 8 PVKALVEILLHFILR--GHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHG 85 (122)
T ss_pred cHHHHHHHHHHHHhc--cCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCc
Confidence 345566666666667 679999998766542 12234567788999999999888877777764 4566667899
Q ss_pred eEEeccchhhhH
Q 010790 413 LLVTNDEMRDHI 424 (501)
Q Consensus 413 ~~vsnD~~Rdh~ 424 (501)
++|||.++|--.
T Consensus 86 I~VSs~E~~~~~ 97 (122)
T PF14626_consen 86 IFVSSSEYRRRN 97 (122)
T ss_pred EEECCHHHhccc
Confidence 999999987543
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.38 E-value=29 Score=34.88 Aligned_cols=109 Identities=6% Similarity=-0.035 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
+.+..|.-+...|+...|.++-.+. .| |+..-|-..|.+++..+ ++++-.++-. +.-+| +-|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~--------~w~eL~~fa~----skKsP--IGy 240 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENK--------DWDELEKFAK----SKKSP--IGY 240 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcC--------CHHHHHHHHh----CCCCC--CCh
Confidence 5677788888899999888886554 34 67777878888888888 7876555422 22233 678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
-.++..|.+.|+..+|..++..+ ++..-+..|.++|++.+|-+.--+
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999999999887776 346778999999999998876433
No 193
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=57 Score=37.58 Aligned_cols=156 Identities=12% Similarity=-0.029 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
+..|..+-.+-.+.|.+.+|++-|-+. -|+..|.-++..+++.+ .+++-.+.+.-.++..-+|.+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~--------~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTG--------KYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhcCccch
Confidence 345666666666666666666655332 13456666677666666 6666666555444444455543
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
+.||-+|++.+++.+-++++. -|+......+=+-|...|..+.|.-+|.... -|.-|-..+
T Consensus 1170 --~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TL 1230 (1666)
T KOG0985|consen 1170 --SELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTL 1230 (1666)
T ss_pred --HHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHH
Confidence 366677777666655443321 1455555555555556666666666654432 355555556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
+.-|++..|...-++ .-+..|+.-+.-+|
T Consensus 1231 V~LgeyQ~AVD~aRK------Ans~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARK------ANSTKTWKEVCFAC 1259 (1666)
T ss_pred HHHHHHHHHHHHhhh------ccchhHHHHHHHHH
Confidence 666655555443333 12345565555555
No 194
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=1e+02 Score=35.72 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCC----------CCC---------CCChhhH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNL--RLSLHHFNALLYLCSDSA----------TDP---------SSKDSAL 82 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv--~p~~~ty~~LL~~c~~~~----------~~~---------~~k~~~~ 82 (501)
+.....+.++.-++-+.+-+++++.+.-.+- .-+...=|.||-.--++. ++- ....+..
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY 1064 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH
Confidence 4567778899999999999999998774331 112222333333222222 111 1123457
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 83 RHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
++|+.+|+... .+....+.||.- -+.++.|.+.-+.. . ....|+.+-.+-.+.|.+.+|.+-|-.
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~-n------~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC-N------EPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh-C------ChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 77888877642 344444444432 33444444443333 1 123444444444444444444443322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 010790 163 MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (501)
Q Consensus 163 M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~ 208 (501)
. -|...|..+|+...+.|.+++....+.--++....|...
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 1 133445555555555555555555554444444444443
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.51 E-value=54 Score=32.46 Aligned_cols=172 Identities=16% Similarity=0.069 Sum_probs=89.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--------------------------C
Q 010790 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA--------------------------T 73 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~--------------------------~ 73 (501)
..|++.+++.|..+.+..++..|+++...-.++.-+ +....+.|-..|-..- .
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 456778888888888888899998888765554321 2223333322222222 0
Q ss_pred CCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHH---HH
Q 010790 74 DPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA--ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC---FC 148 (501)
Q Consensus 74 ~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~--~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~---~~ 148 (501)
...-+.+.+.+|+++...|... |+...-..-+.+. ...+++-.+..++++. .. .-+-..+|+. ..
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-p~------en~Ad~~in~gClly 155 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-PS------ENEADGQINLGCLLY 155 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhc-cC------CCccchhccchheee
Confidence 0001122344444444444221 1111111111111 1244555555555555 21 1111222222 23
Q ss_pred HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 010790 149 ENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC 204 (501)
Q Consensus 149 ~~g~~~~A~~lf~~M~~~-gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~ 204 (501)
+.|+.+.|.+-|++.... |..| ...||.-+..| +.|+.+.|+.+..++.+.|+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 678888888888776654 5554 45677666655 456778888888888877754
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.22 E-value=7.4 Score=28.71 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 010790 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG-RVEKVYQYLQKLRS 200 (501)
Q Consensus 137 ~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g-~~~~a~~ll~~M~~ 200 (501)
..+|..+=..+...|++++|...|++..... .-+...|..+-.+|.+.| +.++|++.+++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4466667777888999999999999887764 225567888888888888 68999988887553
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.95 E-value=14 Score=40.02 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ------ 173 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~------ 173 (501)
+..+.-.+..-+-+...+..|-++|..| ... ..+++.....+++++|+.+-+..++. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~-gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKM-GDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHh-ccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 3344444555555677788888899888 322 45677888999999999998877653 33332
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 174 -----EIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 174 -----t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
-+..-=.+|-++|+..+|..+++.+..+
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2333445777888888888888887655
No 198
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.01 E-value=27 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS 57 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~ 57 (501)
.+..+-+-|++.||.++|++.|.++.+..+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~ 70 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPG 70 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH
Confidence 566777778888888888888888777655443
No 199
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.56 E-value=54 Score=31.22 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCC-CCCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLH-HFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPN 100 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~-ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g-~~pd 100 (501)
..|..+-..|-+.|+.+.|.+-|+...... |+.. ..|.-=. +|+.. .+++|...|+.-...- +.--
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg---------~~~eA~q~F~~Al~~P~Y~~~ 138 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQG---------RPEEAMQQFERALADPAYGEP 138 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCC---------ChHHHHHHHHHHHhCCCCCCc
Confidence 478888999999999999999999987532 2211 1121111 57666 5999999999977641 1122
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
..||..+--+..+.|+.+.|.+.|..- .+. .|+ .-+.-.+-....+.|+.-.|...++.....+. ++..+.-..|
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~ra-L~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~i 214 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRA-LEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGI 214 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHH-HHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHH
Confidence 347778877888999999999999987 433 132 34556677778899999999999999887766 8888988899
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 010790 180 KVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~M~~ 200 (501)
+.-...|+.+.+.+.=..+..
T Consensus 215 riak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 215 RIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 998899998888776655544
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.26 E-value=49 Score=34.72 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHhHhh
Q 010790 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE----ASVTSVARLAASKNDGDYAFVLIKRMNNE 130 (501)
Q Consensus 57 ~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~----~t~~~li~~~~~~g~~~~A~~l~~~M~~~ 130 (501)
+...|+.+-.++...+ ++++|+..|++-.+. .||. .+|..+..+|+..|+.++|.+.+++. .+
T Consensus 74 ~a~a~~NLG~AL~~lG--------ryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA-Le 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKG--------RVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA-LR 140 (453)
T ss_pred CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH
Confidence 4566777766777777 899999999997664 4653 46999999999999999999999998 44
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=80.03 E-value=44 Score=29.82 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
++++|..+|..+..-.. -+..-|-.|--.+-..|++++|...|... -.... -|.+.+-.+=.+|...|+.+.|.+-|
T Consensus 50 ~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A-~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 50 EFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRA-AQIKI-DAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCC-CCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 79999999999866322 24455667777788899999999999988 55443 46688888888999999999999999
Q ss_pred HHHHHC
Q 010790 161 EHMGLM 166 (501)
Q Consensus 161 ~~M~~~ 166 (501)
+.-...
T Consensus 127 ~~Ai~~ 132 (157)
T PRK15363 127 KAVVRI 132 (157)
T ss_pred HHHHHH
Confidence 876543
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.72 E-value=78 Score=32.53 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL--RLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv--~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
..|.|+ .|-...+.+.-++|++.|..--. .++.....-+.. +..+.. +.|+.++|++++..+....-.++.
T Consensus 144 v~~lll-SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn-----~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 144 VINLLL-SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN-----KPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHH-HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc-----cCCCHHHHHHHHHHHHhccCCCCh
Confidence 444444 48888999999999999986521 111111111111 333311 234899999999997766666777
Q ss_pred HHHHHHHHHHHh---------CCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCC-HH---HHHHHH---HH-HH
Q 010790 102 ASVTSVARLAAS---------KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE-AE---KAYEVE---EH-MG 164 (501)
Q Consensus 102 ~t~~~li~~~~~---------~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~-~~---~A~~lf---~~-M~ 164 (501)
-||..+-+.|-. ...++.|...|.+- ..+.|+..+--.+...+...|. .+ +..++- .. +.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 788777776533 22467788777765 4455665433222222333332 21 222322 22 22
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010790 165 LMGL---SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 165 ~~gv---~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~ 202 (501)
++|. ..|---+.+++.+++-.|+.++|.....+|....
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3332 3455678899999999999999999999998764
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.03 E-value=16 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=36.4
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
..|.+.+++++|.++++.+ ... .| +...|...=..|.+.|++++|.+.|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~-l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERA-LEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHH-HHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567777888888888777 332 23 3344555555677778888888877777654
No 204
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.25 E-value=65 Score=34.55 Aligned_cols=141 Identities=13% Similarity=0.032 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCC
Q 010790 38 DLTTAISLYESAH-SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKN 115 (501)
Q Consensus 38 ~~~~A~~lf~~m~-~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p-d~~t~~~li~~~~~~g 115 (501)
.+....++|-++. ..+.++|+-..+.|=-+|-..+ .+++|.+-|+..... .| |..+||-|=..++...
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~--------efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG--------EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGN 478 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch--------HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCc
Confidence 3445566666655 4454455555555533444445 789999999887663 44 6778899888888888
Q ss_pred CHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHH---HHCC------CCCCHHHHHHHHHHHHhc
Q 010790 116 DGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHM---GLMG------LSLEQQEIAALLKVSAET 185 (501)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M---~~~g------v~pd~~t~~~Li~~~~~~ 185 (501)
+-++|..-|.+. . .++|.- ++.-.|=-.|...|.+++|.+.|-+. ..++ -.++...|.+|=.++.-.
T Consensus 479 ~s~EAIsAY~rA-L--qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 479 RSEEAISAYNRA-L--QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred ccHHHHHHHHHH-H--hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 999999999888 3 345654 33334444567888888888776543 2321 122345677766666555
Q ss_pred CChHHH
Q 010790 186 GRVEKV 191 (501)
Q Consensus 186 g~~~~a 191 (501)
+..|.+
T Consensus 556 ~~~D~l 561 (579)
T KOG1125|consen 556 NRSDLL 561 (579)
T ss_pred CCchHH
Confidence 555533
No 205
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.19 E-value=9.2 Score=37.86 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=64.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 51 SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---NVIPNEASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 51 ~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~---g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
..|......|...++..-.... .++++...+-.++.+ -..|+... -+.++.+- .-+++++..++..=
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~--------~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~np 126 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSRE--------EIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNP 126 (418)
T ss_pred hcCCCcceeehhhhhhcccccc--------chhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCc
Confidence 4566556666666665444333 577777766666542 12233222 23444433 34566777777766
Q ss_pred HhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 128 NNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 128 ~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
...|+-||.+|++.+|+.+.+.+++..|..+.-.|..+
T Consensus 127 -IqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 127 -IQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred -chhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 67888888888888888888888887777666555443
No 206
>PRK11906 transcriptional regulator; Provisional
Probab=77.61 E-value=99 Score=32.55 Aligned_cols=162 Identities=9% Similarity=0.101 Sum_probs=99.9
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHHhCC
Q 010790 27 LINLQSCTKS-----KDLTTAISLYESAHS-QNLRLSLHHFNALLYLCSD----SATDPSSKDSALRHGFRVFDQMLSNN 96 (501)
Q Consensus 27 n~lI~~~~k~-----g~~~~A~~lf~~m~~-~gv~p~~~ty~~LL~~c~~----~~~~~~~k~~~~~~a~~lf~~M~~~g 96 (501)
...+.+.... -+.+.|+.+|++... +.+.|+-..--.++.-|-- .|... ......+|.++-+.-.+.+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~--~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE--LELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHhcC
Confidence 4555555441 245788999999883 3466653332233332221 12111 4446777888877766654
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCH
Q 010790 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEH-MGLMGLSLEQ 172 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~---~ty~~lI~~~~~~g~~~~A~~lf~~-M~~~gv~pd~ 172 (501)
- -|......+-.+....++.+.|..+|++. . .+.||. ..|..++..+ +|+.+.|.+.+++ +.-.....-.
T Consensus 335 ~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA-~--~L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 335 T-VDGKILAIMGLITGLSGQAKVSHILFEQA-K--IHSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred C-CCHHHHHHHHHHHHhhcchhhHHHHHHHH-h--hcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCchhhHH
Confidence 3 47777777777778888999999999988 3 344654 5556665554 8999999999988 4333233233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 010790 173 QEIAALLKVSAETGRVEKVYQYLQK 197 (501)
Q Consensus 173 ~t~~~Li~~~~~~g~~~~a~~ll~~ 197 (501)
...-..|+.|+.++. +.|..++-+
T Consensus 409 ~~~~~~~~~~~~~~~-~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNPL-KNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCch-hhhHHHHhh
Confidence 444555667776664 566666543
No 207
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=76.96 E-value=54 Score=37.61 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 010790 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGD 118 (501)
Q Consensus 39 ~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~ 118 (501)
...|+..|-+..+..+.. ...|..|=..|.... +..+|..-|+.-.+-. .-|...+.+....|++..+++
T Consensus 474 ~~~al~ali~alrld~~~-apaf~~LG~iYrd~~--------Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL-APAFAFLGQIYRDSD--------DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 666666666555443211 234555544444333 4666777777664431 235566778888888888888
Q ss_pred HHHHHHHHhHhhcCCCCChhhHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010790 119 YAFVLIKRMNNEFNVVPRLRTYDPALF--CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196 (501)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~lI~--~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~ 196 (501)
+|+.+.-....+. +.-...+|-+-. .|.+.++..+|..-|+.-.+.... |...|..|..+|...|....|+++|.
T Consensus 544 ~a~~I~l~~~qka--~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 544 EAFEICLRAAQKA--PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHhhhc--hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhh
Confidence 8888843321111 011122222222 244556666666666555444322 55666666666666666666666665
Q ss_pred HH
Q 010790 197 KL 198 (501)
Q Consensus 197 ~M 198 (501)
+.
T Consensus 621 kA 622 (1238)
T KOG1127|consen 621 KA 622 (1238)
T ss_pred hh
Confidence 54
No 208
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.78 E-value=1.1e+02 Score=33.13 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HhHhh
Q 010790 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIK--------RMNNE 130 (501)
Q Consensus 59 ~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~--------~M~~~ 130 (501)
+.+.+|+..+.+... .....+.+++...-.....-...+--+++......|+++.|.+++. .+ .+
T Consensus 340 ~~~~~ll~~~t~~~~------~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~-~~ 412 (652)
T KOG2376|consen 340 SLFPILLQEATKVRE------KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI-LE 412 (652)
T ss_pred HHHHHHHHHHHHHHH------HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh-hh
Confidence 566667665544320 0245566666665443222234566677788889999999999999 66 55
Q ss_pred cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCC
Q 010790 131 FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLKVSA----ETGRVEKVYQYLQKLRSTVRC 204 (501)
Q Consensus 131 ~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~--gv~pd~~t~~~Li~~~~----~~g~~~~a~~ll~~M~~~~~~ 204 (501)
.+-.| -+..++...|.+.++-+.|-.++.+-... .-.+.....+.++.-.+ +.|..++|..+++++.+.. .
T Consensus 413 ~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~ 489 (652)
T KOG2376|consen 413 AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P 489 (652)
T ss_pred hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C
Confidence 55544 45677888888999988898888776532 11223344555554433 5799999999999998742 4
Q ss_pred CCHHHHHHHHHHhccC
Q 010790 205 VNEETGKIIEDWFSGQ 220 (501)
Q Consensus 205 p~~~t~~~i~~~f~~~ 220 (501)
++..+..-+..+++.+
T Consensus 490 ~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL 505 (652)
T ss_pred chHHHHHHHHHHHHhc
Confidence 5555555555555443
No 209
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=18 Score=35.87 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=84.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010790 94 SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF---NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (501)
Q Consensus 94 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~---gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p 170 (501)
..|......+...++..-....+++.+...+-.+ +.. -..|+. |-.+++.-+ ..-+.+++..+...=...|+-|
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKl-Rhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKL-RHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHH-hcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 3566667777788888888888999999998887 432 111222 223333333 3456778888888888889999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 171 d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
|..+++.||+.+.++++..+|..+.-.|......-++.+-
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~ 173 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQ 173 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999888776555555443
No 210
>PLN02789 farnesyltranstransferase
Probab=74.38 E-value=1e+02 Score=31.04 Aligned_cols=181 Identities=9% Similarity=0.028 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSK-DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g-~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.|+.-=..+.+.| ++++|+..++++...+-+. ...|+-.--.+.+.+. ...++++.+++.|.+... -|..+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~~l~~------~~~~~el~~~~kal~~dp-kNy~A 144 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAEKLGP------DAANKELEFTRKILSLDA-KNYHA 144 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHHHcCc------hhhHHHHHHHHHHHHhCc-ccHHH
Confidence 4433333344556 6899999999988765432 2345533222333330 023567888888887543 47889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHc---CCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCEN---LEA----EKAYEVEEHMGLMGLSLEQQEIA 176 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~---g~~----~~A~~lf~~M~~~gv~pd~~t~~ 176 (501)
|+-.--++...|++++|++.++++ .+.+. -|...|+..-..+.+. |.. +.+.+....+.... .-|...|+
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~-I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~ 221 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQL-LEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWR 221 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-HHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHH
Confidence 999999999999999999999999 66554 3556666655554443 222 45666665665543 23777899
Q ss_pred HHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 177 ALLKVSAETG----RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 177 ~Li~~~~~~g----~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
-+...+...+ ...+|.+.+.+..... ..+......++..+
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 8888887733 3456777777755432 22333445555555
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.14 E-value=1.3e+02 Score=32.09 Aligned_cols=163 Identities=20% Similarity=0.130 Sum_probs=98.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH-----HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQ-NLRLSLHH-----FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~-gv~p~~~t-----y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
++...+=.||-+.+++++.+..+. +++-...+ |..++..+ .+++. .....+.|.++++.+..+ -|+..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~--~~~~~--~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSF--LGIDG--EDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH--cCCcc--cCCCHHHHHHHHHHHHHh--CCCcH
Confidence 444455568999999988886543 34322222 22222211 12211 233788999999999875 46766
Q ss_pred HHHHHH-HHHHhCCCHHHHHHHHHHhHhhcC--C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010790 103 SVTSVA-RLAASKNDGDYAFVLIKRMNNEFN--V-VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 103 t~~~li-~~~~~~g~~~~A~~l~~~M~~~~g--i-~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
.|.-.- +.+...|++++|.+.|++. .... . +.....|=-+.-.++-.+++++|.+.|..+.+..-. +...|.-+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a-~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~ 345 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERA-IESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHh-ccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 654443 4566699999999999975 2211 0 012233334444577789999999999999875322 33344444
Q ss_pred HHHHH-hcCCh-------HHHHHHHHHHH
Q 010790 179 LKVSA-ETGRV-------EKVYQYLQKLR 199 (501)
Q Consensus 179 i~~~~-~~g~~-------~~a~~ll~~M~ 199 (501)
..+|. ..|+. ++|.++|.+..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44333 35666 77888887653
No 212
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.66 E-value=64 Score=28.51 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY 157 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~ 157 (501)
+++++..+++.|...-.. +...+|-..| +...|+|++|..+|++. ... +-...|...|.++|....-|-.+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l-~~~---~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILREL-LSS---AGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhh-hcc---CCCchHHHHHHHHHHHhcCChHH
Confidence 577777777777653221 2333444444 45677888888888887 443 22335666666666544444433
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=72.84 E-value=6.6 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKR 126 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~ 126 (501)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666665555
No 214
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.56 E-value=31 Score=34.10 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=34.6
Q ss_pred CHHHHHHHH-HHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010790 116 DGDYAFVLI-KRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (501)
Q Consensus 116 ~~~~A~~l~-~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a 191 (501)
.+++..... ++| ++.++ |+......+-++....+++.+-.++..+-.-+ ...+|.-|+.+++..|+.+-.
T Consensus 270 p~~evi~~VKee~-k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 270 PVKEVILYVKEEM-KRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred CHHHHHHHHHHHH-HhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHH
Confidence 334433333 456 66666 67644333333333334443332222211111 123788888888888877644
No 215
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.51 E-value=42 Score=35.43 Aligned_cols=132 Identities=12% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010790 33 CTKSKDLTTAISLYES-AHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~-m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~ 111 (501)
..-.++++++.++... -.-..++ ..-.+.++.-+.+.| ..+.|+++-.+- ..-....
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G--------~~e~AL~~~~D~------------~~rFeLA 328 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKG--------YPELALQFVTDP------------DHRFELA 328 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT---------HHHHHHHSS-H------------HHHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCC--------CHHHHHhhcCCh------------HHHhHHH
Confidence 3446788887766641 1112232 344777777777777 688888774432 2345666
Q ss_pred HhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010790 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (501)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a 191 (501)
.+.|+++.|.++.++. ++...|..|=+...+.|+++.|.+.|.... -|..|+-.|.-.|+.++.
T Consensus 329 l~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHH
Confidence 7899999999887666 477899999999999999999999998875 477888888889998877
Q ss_pred HHHHHHHHhCC
Q 010790 192 YQYLQKLRSTV 202 (501)
Q Consensus 192 ~~ll~~M~~~~ 202 (501)
.++.+.-...|
T Consensus 393 ~kl~~~a~~~~ 403 (443)
T PF04053_consen 393 SKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77776665554
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=83 Score=31.01 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHS-QNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~-~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
+.|-.|=..|.+.|+...|..-|....+ .|-.| .-+..+-. ++..++ .. .-.++..+|+++.... .-|+
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~--~~----~ta~a~~ll~~al~~D-~~~i 227 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAG--QQ----MTAKARALLRQALALD-PANI 227 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcC--Cc----ccHHHHHHHHHHHhcC-CccH
Confidence 3555555566666666666666655443 22222 22222211 111111 00 2334555555554421 1233
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
.+..-|-..+...|+..+|...++.|
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33444444555555666666655555
No 217
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.39 E-value=76 Score=35.80 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=74.7
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--------CCC--HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHH
Q 010790 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQ-NL--------RLS--LHHFNALLYLCSDSATDPSSKDSALRHGFRVF 89 (501)
Q Consensus 21 ~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~-gv--------~p~--~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf 89 (501)
..+..|..|-.+|.+..+++-|.-.+-.|... |. .|+ ..-..+| -.. .|++++|..+|
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL---Aie--------LgMlEeA~~lY 823 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL---AIE--------LGMLEEALILY 823 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH---HHH--------HhhHHHHHHHH
Confidence 44568999999999999999998877777632 21 111 1111111 111 23799999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 90 ~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
.+-++ |..|=+.|-..|.|++|+++-+.= .+.-+ . .||-.--.-+-..+|++.|++.|+.
T Consensus 824 r~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~-DRiHL--r-~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 824 RQCKR---------YDLLNKLYQSQGMWSEAFEIAETK-DRIHL--R-NTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHH---------HHHHHHHHHhcccHHHHHHHHhhc-cceeh--h-hhHHHHHHHHHhhccHHHHHHHHHh
Confidence 98754 556778888899999999987654 32222 1 2333333333345677777766654
No 218
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.28 E-value=30 Score=34.05 Aligned_cols=100 Identities=15% Similarity=-0.040 Sum_probs=69.6
Q ss_pred HHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 010790 111 AASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRV 188 (501)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~~~~g~~ 188 (501)
+.+.+++++|+..|.+. .. +.|. .+-|..=-.+|++.|..+.|.+=-+.-..- .| -..+|..|-.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~A-I~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEA-IE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHH-Hh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 45678888888888887 33 3444 455555567888888888888765554432 22 234788888888888889
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 189 EKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 189 ~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
++|.+.|++-. -+.|+-.++..=+.+-
T Consensus 166 ~~A~~aykKaL--eldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKAL--ELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhh--ccCCCcHHHHHHHHHH
Confidence 88888877644 4578888887766665
No 219
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=71.10 E-value=47 Score=30.17 Aligned_cols=94 Identities=7% Similarity=-0.056 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-----
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQ----- 173 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~----- 173 (501)
..+..+..-|++.|+.+.|++.|.++ ......|.. ..+-.+|......+++..+..........--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46778889999999999999999999 666544433 455677777778889888877766654331111 121
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHH
Q 010790 174 -EIAALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 174 -t~~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
.|..|. +...+++.+|-++|-+.
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHcc
Confidence 222221 22366777777777665
No 220
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.44 E-value=42 Score=31.23 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=57.2
Q ss_pred HHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHh--hcCCCCChhhHHHH
Q 010790 66 YLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN--EFNVVPRLRTYDPA 143 (501)
Q Consensus 66 ~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~--~~gi~P~~~ty~~l 143 (501)
...++.| -++|++.|-.+...+..-+....-+|...|. ..+.++|..++-.... ..+-.+|...+.+|
T Consensus 115 y~Wsr~~---------d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 115 YHWSRFG---------DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred HHhhccC---------cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 3666665 4568888888887776655555555544444 7788888888876522 12324678888899
Q ss_pred HHHHHHcCCHHHHH
Q 010790 144 LFCFCENLEAEKAY 157 (501)
Q Consensus 144 I~~~~~~g~~~~A~ 157 (501)
.+.|-+.|+.+.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999888886
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=70.03 E-value=62 Score=34.43 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=82.4
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCC---
Q 010790 25 NFLINLQSCTK----SKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNN--- 96 (501)
Q Consensus 25 ~~n~lI~~~~k----~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g--- 96 (501)
.|...+..++- ..+.+.|.++++.+..+ -|+..-|...-. .+...+ ++++|.+.|+......
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g--------~~~~Ai~~~~~a~~~q~~~ 300 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKG--------NLEEAIESFERAIESQSEW 300 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc--------CHHHHHHHHHHhccchhhH
Confidence 45556655554 46788899999998865 366666655544 555555 8999999999755321
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHH-HHHcCCH-------HHHHHHHHHHH
Q 010790 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC-FCENLEA-------EKAYEVEEHMG 164 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~-~~~~g~~-------~~A~~lf~~M~ 164 (501)
.+.....+=-+.-.+....+|++|.+.|..+.+...- +..+|..+..+ |...|+. ++|.++|.+.+
T Consensus 301 ~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 301 KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 1123334444555677889999999999999433333 33444444443 2346766 77777777765
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.83 E-value=64 Score=31.79 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHH--HcC-CHHHHHHHHHHHHHCCCCCCHHHH
Q 010790 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC--ENL-EAEKAYEVEEHMGLMGLSLEQQEI 175 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~--~~g-~~~~A~~lf~~M~~~gv~pd~~t~ 175 (501)
=|...|-.|-..|...|+.+.|..-|..-.+-.|-.|+ .+..+-.++. ..+ +-.+|..+|+++...+-. |..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 37888999999999999999999999988333443333 3333333222 222 346788999999876432 55566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 176 AALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 176 ~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
.-|-..+.+.|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66667888999999999999999876
No 223
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.82 E-value=17 Score=29.87 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHH
Q 010790 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF 145 (501)
Q Consensus 85 a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~ 145 (501)
..+-++.+......|+.....+.+++|-+..++..|.++|+.+ +. ++.+....|..+|+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i-K~-K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI-KD-KCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH-HH-HTTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH-HH-HccChHHHHHHHHH
Confidence 4444444444556677777777777777777777777777776 32 22223335655554
No 224
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=69.33 E-value=1.3e+02 Score=33.48 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=93.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010790 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAA 112 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~ 112 (501)
+.+.++.++++.-|.....++...+..++..+...+. -|...+..+++ ++-...+.-..|-...+.+++...
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~-----~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm- 308 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFA-----LFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM- 308 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhccc-----ccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH-
Confidence 4456677777777777777777777777776554322 23333355555 333344433444444444433321
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
-++.++ ....+.=|...|-.+--+..++|+++.+-+.|++..-. ..-....|..+-..|..+|.-..|.
T Consensus 309 ---------~~~~k~-r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av 377 (799)
T KOG4162|consen 309 ---------LLLRKL-RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAV 377 (799)
T ss_pred ---------HHHHHH-HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHH
Confidence 123333 33334446677777777888888888888888776432 2335567888888888888888888
Q ss_pred HHHHHHHhCCCCCCH
Q 010790 193 QYLQKLRSTVRCVNE 207 (501)
Q Consensus 193 ~ll~~M~~~~~~p~~ 207 (501)
.++++-...--.|+.
T Consensus 378 ~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 378 NLLRESLKKSEQPSD 392 (799)
T ss_pred HHHHhhcccccCCCc
Confidence 888765443333443
No 225
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.06 E-value=23 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 85 a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
+.+-++.+......|+....++.+++|-+..++..|.++|+..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444444556666666677777777777777777777666
No 226
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.92 E-value=4.2 Score=35.03 Aligned_cols=32 Identities=28% Similarity=0.193 Sum_probs=26.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 149 ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 149 ~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
..|.-..|..||..|...|-.|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45667788999999999999888 688888765
No 227
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.33 E-value=68 Score=31.65 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=74.7
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCC-hhhHHHHHHHHHHcCCHHH
Q 010790 77 SKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEK 155 (501)
Q Consensus 77 ~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~lI~~~~~~g~~~~ 155 (501)
.+.+++.+|+..|.+-++.. +-|.+-|..=..+|++.|..+.|.+=.+.- .. +.|+ ..+|..|=.+|.-.|+.++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~A-l~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESA-LS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHH-Hh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 35678899999999887642 237778889999999999999998877766 22 3344 3899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 010790 156 AYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 156 A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
|.+-|..-.+ +.|+-.+|-.=
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHH
Confidence 9999887654 67877665433
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=68.31 E-value=1e+02 Score=28.52 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR-L-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~-p-~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~ 102 (501)
.|..- ..+.+.|+..+|...|+.+...--. | -....-.+..++-+.+ +.+.|...|+.+......-...
T Consensus 8 lY~~a-~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--------~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 8 LYQKA-LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--------DYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHH-HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCcch
Confidence 44433 3455778999999999998865321 1 1122223334666666 8999999999987754332333
Q ss_pred HHHHHHHHHH
Q 010790 103 SVTSVARLAA 112 (501)
Q Consensus 103 t~~~li~~~~ 112 (501)
-+...+.+.+
T Consensus 79 ~~A~Y~~g~~ 88 (203)
T PF13525_consen 79 DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 229
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.68 E-value=1.8e+02 Score=31.32 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010790 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARL 110 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p-d~~t~~~li~~ 110 (501)
+.+.|++.+|.-+|+....+. +....+-.. +......+ .-..|+.-+.+-.+ ..| |....-+|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE------~E~~ai~AL~rcl~--LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENE------NEQNAISALRRCLE--LDPTNLEALMALAVS 362 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhcc------chHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 567899999999999877654 244444433 22222100 11223333333322 223 34444555555
Q ss_pred HHhCCCHHHHHHHHHHh
Q 010790 111 AASKNDGDYAFVLIKRM 127 (501)
Q Consensus 111 ~~~~g~~~~A~~l~~~M 127 (501)
|...|.=..|+.+|+.-
T Consensus 363 ytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 55556555666655543
No 230
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.67 E-value=70 Score=28.11 Aligned_cols=93 Identities=9% Similarity=0.058 Sum_probs=51.5
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhCCC-HHHH
Q 010790 49 AHSQNLRLSL--HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-----IPNEASVTSVARLAASKND-GDYA 120 (501)
Q Consensus 49 m~~~gv~p~~--~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~-----~pd~~t~~~li~~~~~~g~-~~~A 120 (501)
|.+.+..++. ...|.+|.-.+... .+.-...+++.+..-.. ..+-.+|.+++++.+...- ---+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~--------nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~ 99 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQ--------NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTS 99 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHH
Confidence 3445555554 34677777544444 45666666666632100 1334456666666655554 3445
Q ss_pred HHHHHHhHhhcCCCCChhhHHHHHHHHHHc
Q 010790 121 FVLIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (501)
Q Consensus 121 ~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~ 150 (501)
..+|+-| ++.+.+++..-|..||.++.+.
T Consensus 100 ~~Lf~~L-k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 100 LTLFNFL-KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHH-HHcCCCCCHHHHHHHHHHHHcC
Confidence 6666666 5555666666666666665443
No 231
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=67.60 E-value=13 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHHhcCc-eEEeccchhhh
Q 010790 396 GSNDDWYWLYAAVKLRC-LLVTNDEMRDH 423 (501)
Q Consensus 396 ~~~DD~~~l~aa~~~~~-~~vsnD~~Rdh 423 (501)
...||..++-+|+..+| +|||+| ||+
T Consensus 85 ~D~~D~~~l~~A~~~~ad~iVT~D--kdl 111 (114)
T TIGR00305 85 RDKKDNKFLNTAYASKANALITGD--TDL 111 (114)
T ss_pred CCchhHHHHHHHHhcCCCEEEECC--HHH
Confidence 36679999999999988 999999 554
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=67.60 E-value=2e+02 Score=31.63 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=77.4
Q ss_pred CCCHHHHHH--HHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010790 98 IPNEASVTS--VARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE 174 (501)
Q Consensus 98 ~pd~~t~~~--li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t 174 (501)
.|.+..|+. ++.-|-+.|+.+.|...++.. .. -.|.. .-|-+=-..++..|+++.|...+++-.+.+.. |...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~A-Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA-ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHH
Confidence 466666655 567788899999999999988 33 23443 23333336678899999999999998765432 3221
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 175 ~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
=.--.....++.+.++|.+++...-..|...-......-..||
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 1123334556889999999999988887633233334445566
No 233
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.51 E-value=4.5 Score=34.83 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010790 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (501)
Q Consensus 76 ~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~ 111 (501)
..+.|.-.+|..+|..|.++|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3455677789999999999999999 588888764
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=67.49 E-value=10 Score=24.29 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
+|+.|-..|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4777888888888888888888874
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.47 E-value=71 Score=27.80 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010790 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 141 ~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~ 202 (501)
...|+...+.|.-|.-.+++.++.. +-.++....-.+-.+|.+-|+..++-+++.+--+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444455555555555544432 123344444445555555555555555555544444
No 236
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.26 E-value=1.3e+02 Score=29.28 Aligned_cols=162 Identities=9% Similarity=0.062 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~-~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.|-.+.-+..-+|+.+-|...++++.++- |...-.--|=. .+--.+ ..++|.++|+.+.+.. +-|.++
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~--------~~~~A~e~y~~lL~dd-pt~~v~ 122 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG--------NYKEAIEYYESLLEDD-PTDTVI 122 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh--------chhhHHHHHHHHhccC-cchhHH
Confidence 34444444555677777888887777653 33222222211 111223 6889999999998875 567888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVS 182 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~ 182 (501)
+--=|...-..|..-+|.+-+.+. -+ .+.-|...|--+-..|...|++++|--.+++|.-. .| +...+..+-+.+
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~Y-L~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEY-LD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH-HH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 877677777788888888888777 22 35579999999999999999999999999998764 34 333444444433
Q ss_pred H-hcC--ChHHHHHHHHHHHhC
Q 010790 183 A-ETG--RVEKVYQYLQKLRST 201 (501)
Q Consensus 183 ~-~~g--~~~~a~~ll~~M~~~ 201 (501)
- ..| +.+-+.+.|.+-.+.
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 2 333 455666666655443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.20 E-value=1.4e+02 Score=31.74 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=36.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~ 164 (501)
+...+-+.|+.++|.++|.+|.+.....-.......||.++...+...++..++..-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3334445678888888887773333211133455677777878888777777776653
No 238
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.80 E-value=1e+02 Score=28.13 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 010790 35 KSKDLTTAISLYESAHSQNL 54 (501)
Q Consensus 35 k~g~~~~A~~lf~~m~~~gv 54 (501)
+.+..++|+.-|.++.+.|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~ 89 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGY 89 (221)
T ss_pred HcCCchHHHHHHHHHHhcCC
Confidence 34445555555555555544
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.25 E-value=1.4e+02 Score=29.50 Aligned_cols=136 Identities=12% Similarity=0.069 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
++.+|..+|+.....--. +...--.|+..|...|+.+.|..+++.+ ...--........+-|..+.+.....+...+-
T Consensus 149 ~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l-P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 149 DFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL-PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred chhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 577777777776553222 2334456788888888888888888888 33211111122222333444444444333333
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhccCc
Q 010790 161 EHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRST-VRCVNEETGKIIEDWFSGQK 221 (501)
Q Consensus 161 ~~M~~~gv~p-d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~-~~~p~~~t~~~i~~~f~~~~ 221 (501)
...-. .| |...=-.|-..+...|+.+.|++.|-.+... --.-+...-..+++.|...+
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33332 24 4445556667788899999999888766554 33345556677788886654
No 240
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=64.82 E-value=2.3e+02 Score=31.31 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=103.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhCCCCCCCChhhHHHHHHHHHHHHhC
Q 010790 19 NPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (501)
Q Consensus 19 ~~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~---~c~~~~~~~~~k~~~~~~a~~lf~~M~~~ 95 (501)
..+|...|-.+-+.|-..|+++.|..+|++......+ +-+-|-. .|+. ++.++..++.|+++.+.-.
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~wae----mElrh~~~~~Al~lm~~A~-- 452 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAE----MELRHENFEAALKLMRRAT-- 452 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHH----HHHhhhhHHHHHHHHHhhh--
Confidence 3445567888889999999999999999998876652 2222222 3332 2333446777777655432
Q ss_pred CCCC--------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCC-CCCh-hhHHHHHHHHHHcCCH
Q 010790 96 NVIP--------------------NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRL-RTYDPALFCFCENLEA 153 (501)
Q Consensus 96 g~~p--------------------d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~-~ty~~lI~~~~~~g~~ 153 (501)
..| +...|.-.+..--..|-++....+++.| ....+ .|.. ..|..+|. .+..+
T Consensus 453 -~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri-idLriaTPqii~NyAmfLE---eh~yf 527 (835)
T KOG2047|consen 453 -HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI-IDLRIATPQIIINYAMFLE---EHKYF 527 (835)
T ss_pred -cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHH---hhHHH
Confidence 222 2334555666666677777788888888 44333 2222 22222222 35568
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 010790 154 EKAYEVEEHMGLMGLSLEQ-QEIAALLKVSAE---TGRVEKVYQYLQKLRS 200 (501)
Q Consensus 154 ~~A~~lf~~M~~~gv~pd~-~t~~~Li~~~~~---~g~~~~a~~ll~~M~~ 200 (501)
++++++|+.=...=-.|++ ..||+.+.-+.+ .-.++.|..+|+...+
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8899888653222113444 368887777665 3378999999999887
No 241
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.22 E-value=1.1e+02 Score=27.43 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHhCCCHHHHHHHHHHhHhhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010790 111 AASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (501)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~---~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~ 184 (501)
-.+.++.+++..+++.| . -+.|.. .++-.+| +...|++++|..+|+++.+.. |....-.+|+..|..
T Consensus 20 al~~~~~~D~e~lL~AL-r--vLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDAL-R--VLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHH-H--HhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34466777777777777 2 223443 3444443 346777777777777766542 333344455555444
No 242
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=63.42 E-value=17 Score=31.50 Aligned_cols=41 Identities=29% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHHhcCeEE-eCCCC------CCCcHHHHHHHHhcCc-eEEeccc
Q 010790 379 NLVEEWNEKGVLY-MTPHG------SNDDWYWLYAAVKLRC-LLVTNDE 419 (501)
Q Consensus 379 ~~~~~~~~~~~~~-~t~~~------~~DD~~~l~aa~~~~~-~~vsnD~ 419 (501)
..+..+.+.+.++ .+|.. ..||.+||-.|+++++ ++||-|.
T Consensus 65 ~~v~~l~~~~~~i~I~p~~~f~~~RDp~Dn~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 65 ELVLVLFESVSLIAINPLEKFNICRDPKDNKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHhheeEeecccccccccCCchHHHHHHHHHhccCCEEEEcch
Confidence 4566677777777 55554 4789999999999988 9999997
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=1.5e+02 Score=28.66 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-H--hhcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHH---HHCCCCCCHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRM-N--NEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHM---GLMGLSLEQQEIA 176 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M-~--~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~lf~~M---~~~gv~pd~~t~~ 176 (501)
+..+-+++++...+++|-..|..- + .+..-.|+. ..|-+.|-.|.-..|...|...|..- ....-.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444556666666666665544332 0 011111232 45666777777788999999999883 3332334667899
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 010790 177 ALLKVSAETGRVEKVYQYL 195 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll 195 (501)
.||.+| ..|+.|++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 999998 457777665554
No 244
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.84 E-value=26 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=19.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010790 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (501)
Q Consensus 183 ~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~ 214 (501)
.+.|...++..++++|++.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555566666666666666666666655544
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=1.9e+02 Score=29.75 Aligned_cols=96 Identities=10% Similarity=-0.071 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
..+++.|...|.+.+++..|++.-+.. ...+- +|....=-==.+|...|+++.|+..|..+... .|+-..-++=|.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kv-Le~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKV-LELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHH-HhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 346778888899999999999888877 33321 23322222234677788999999999998864 565555444444
Q ss_pred HHHh-cC-ChHHHHHHHHHHHh
Q 010790 181 VSAE-TG-RVEKVYQYLQKLRS 200 (501)
Q Consensus 181 ~~~~-~g-~~~~a~~ll~~M~~ 200 (501)
.|.+ .. ..++..++|..|-.
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4443 22 23445677777744
No 246
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=61.78 E-value=50 Score=26.92 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
+.=++.+-++.+ -...+.|+.....+.|.||-+.+|+..|.++|+..+.+.-. +...|..++.
T Consensus 22 D~we~rr~mN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNL-FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHH
Confidence 344556666666 56677888888888888888888888888888877754211 2335555543
No 247
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=61.38 E-value=2.8e+02 Score=31.16 Aligned_cols=109 Identities=8% Similarity=-0.045 Sum_probs=74.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010790 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (501)
Q Consensus 90 ~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~ 169 (501)
.++....+.-|...|..|.-+....|+++.+-+.|++. .. ++.-....|+.+=..|.-+|.-..|..|.++-....-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~-~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQA-LP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33333445568888889999999999999999999987 43 33356678888888899999988999988775443323
Q ss_pred CCHHHHHHHHHH-HH-hcCChHHHHHHHHHHHh
Q 010790 170 LEQQEIAALLKV-SA-ETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 170 pd~~t~~~Li~~-~~-~~g~~~~a~~ll~~M~~ 200 (501)
|+..+---|+.. |. +-+..++++.+-.+...
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 444443334433 32 24566666666655554
No 248
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.00 E-value=46 Score=27.42 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010790 119 YAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (501)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~ 180 (501)
+..+-++.+ -...+.|+.....+.|.+|-+..|+..|.++|+.++.+--. ....|..++.
T Consensus 28 e~rrglN~l-~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNL-FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHH-TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred HHHHHHHHH-hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 455566666 56677888888888888888888888888888888765211 1115655544
No 249
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=60.97 E-value=18 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
.+++.|-..|...|++++|..++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 45666666677777777777766655
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.93 E-value=90 Score=34.68 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
.-.+|.++-.+. -.||-..|-.=+.+++..++|++-+++-..+ + +..-|-+...+|.+.|+.++|.+.+
T Consensus 699 ~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAksk-k------sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 699 QNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSK-K------SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred chHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-C------CCCCchhHHHHHHhcccHHHHhhhh
Confidence 566677765444 5689999999999999999999988887777 2 3567899999999999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010790 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196 (501)
Q Consensus 161 ~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~ 196 (501)
..... +.....+|.+.|++.+|.++--
T Consensus 768 prv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 768 PRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 66531 1267788999998888876543
No 251
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.83 E-value=1.2e+02 Score=26.72 Aligned_cols=102 Identities=7% Similarity=0.049 Sum_probs=68.2
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCC-----CCChhhHHHHHHHHHHcCC-HHHHHHH
Q 010790 88 VFDQMLSNNVIPNEA--SVTSVARLAASKNDGDYAFVLIKRMNNEFNV-----VPRLRTYDPALFCFCENLE-AEKAYEV 159 (501)
Q Consensus 88 lf~~M~~~g~~pd~~--t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi-----~P~~~ty~~lI~~~~~~g~-~~~A~~l 159 (501)
....|++.+..+++. ..|.++.-.+..++......+++.+ ..... .-+.-+|..++.+.++..- --.+..+
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l-~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL-HFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Confidence 344456666666653 3577777777777888777777766 32110 1345678888888866655 3446678
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 010790 160 EEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190 (501)
Q Consensus 160 f~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~ 190 (501)
|.-|.+.+..++..-|..||.++.+....+.
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 8888887888888888888888776544443
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.73 E-value=1.3e+02 Score=27.02 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh
Q 010790 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (501)
Q Consensus 59 ~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (501)
...+.||...+.+- +.+..+++..+++.|...-.. |...++-.+| +...|+|.+|..+|+++ ... +-.
T Consensus 8 ~iv~gLie~~~~al-----~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l-~~~---~~~ 76 (160)
T PF09613_consen 8 EIVGGLIEVLSVAL-----RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLREL-EER---APG 76 (160)
T ss_pred HHHHHHHHHHHHHH-----ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHH-hcc---CCC
Confidence 45566666333321 111688999999999774322 3344444444 56899999999999999 544 334
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
.-|...+.++|-...-|..++.+
T Consensus 77 ~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred ChHHHHHHHHHHHHcCChHHHHH
Confidence 45666666666655445555444
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=60.28 E-value=1.2e+02 Score=26.60 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNA---LLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~---LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
..|+.-... .+.|+.++|.+.|+.+..+ .+.+..+=.+ |+.++-+.+ +.++|...++...+....--
T Consensus 12 ~ly~~a~~~-l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~--------~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQG--------DYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCC
Confidence 344444443 4567888888888777654 2233333333 334555565 77888888887777554433
Q ss_pred HHHHHHHHHHHHhC
Q 010790 101 EASVTSVARLAASK 114 (501)
Q Consensus 101 ~~t~~~li~~~~~~ 114 (501)
.+-|-..++|++..
T Consensus 82 ~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 82 NVDYAYYMRGLSYY 95 (142)
T ss_pred CccHHHHHHHHHHH
Confidence 35566666665543
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=59.89 E-value=33 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 175 IAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 175 ~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
|..|-..|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555555555555555555444
No 255
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=59.54 E-value=30 Score=34.14 Aligned_cols=97 Identities=23% Similarity=0.207 Sum_probs=62.1
Q ss_pred ccEEEeCccccccccccCCCCcCchh-HHHHHHHHHHhcCCcceEEEecccccCCCCCCcchHHHHHHHHhcCe--EEeC
Q 010790 317 YEAIVDGANIGLYQQNFTEGGFSVPQ-LDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGV--LYMT 393 (501)
Q Consensus 317 ~D~v~Dg~Nv~~~~~~~~~~~~~~~~-i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t 393 (501)
=.+||||.-.......|-+|..=.+| +..=++++.... . ..||.++++ -.++++++++..- +-.-
T Consensus 167 TSvIIDGRI~di~~TGFleG~iiiP~FVL~ELQ~iADss---D-----~lKR~RGRR----GLdILn~iqk~~~~~v~I~ 234 (356)
T COG4956 167 TSVIIDGRIADILQTGFLEGTIIIPQFVLLELQHIADSS---D-----DLKRNRGRR----GLDILNEIQKEDPIQVEIY 234 (356)
T ss_pred eceEEcchHHHHHHhCCccceEeeeHHHHHHHHHHhhcc---c-----hhhhhcccc----hhHHHHHHHhhCCCcEEEc
Confidence 36899999999887778777644333 333333433321 1 233444432 2478899988862 4444
Q ss_pred CCCCCC----cHHHHHHHHhcCceEEeccchhhhHh
Q 010790 394 PHGSND----DWYWLYAAVKLRCLLVTNDEMRDHIF 425 (501)
Q Consensus 394 ~~~~~D----D~~~l~aa~~~~~~~vsnD~~Rdh~~ 425 (501)
|..-.| |-=++..|-..++.+||||-==....
T Consensus 235 ~~Df~di~eVD~KLvklAk~~~g~lvTND~NLnKVa 270 (356)
T COG4956 235 EGDFEDIPEVDSKLVKLAKVTGGKLVTNDFNLNKVA 270 (356)
T ss_pred cCCccchhhHHHHHHHHHHHhCCEEEeccCcHHHHH
Confidence 555555 88899999999999999996544433
No 256
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=57.93 E-value=2.1e+02 Score=33.16 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=56.6
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHH--HHHHcCCHH
Q 010790 77 SKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF--CFCENLEAE 154 (501)
Q Consensus 77 ~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~--~~~~~g~~~ 154 (501)
.+.+.+..|..-|+.-.+.. +-|...|..+..+|.++|+...|..+|+.. . -+.|+. +|.-.-. .-|..|...
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA-s--~LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA-S--LLRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh-H--hcCcHh-HHHHHHHHHHHHHhhhHH
Confidence 34446666776666654432 237788999999999999999999999887 3 234543 3332222 235678888
Q ss_pred HHHHHHHHHHH
Q 010790 155 KAYEVEEHMGL 165 (501)
Q Consensus 155 ~A~~lf~~M~~ 165 (501)
+|...++....
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 88888777653
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=57.54 E-value=42 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
++..+...|.+.|++++|.++|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=57.39 E-value=1.3e+02 Score=26.20 Aligned_cols=130 Identities=13% Similarity=0.202 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhH---HHHHHHHHHcCCHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY---DPALFCFCENLEAEKAY 157 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty---~~lI~~~~~~g~~~~A~ 157 (501)
.++++.++..+...+ .|..-||-+|--....-+-+-..++++.+ -+. -|.... -.+|.+|++.|...+
T Consensus 17 ~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI-Gki---FDis~C~NlKrVi~C~~~~n~~se-- 87 (161)
T PF09205_consen 17 DVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI-GKI---FDISKCGNLKRVIECYAKRNKLSE-- 87 (161)
T ss_dssp -HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH-GGG---S-GGG-S-THHHHHHHHHTT---H--
T ss_pred hHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH-hhh---cCchhhcchHHHHHHHHHhcchHH--
Confidence 578888888887653 35556666666666666667777777777 221 243322 345666666554332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHH
Q 010790 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVL 237 (501)
Q Consensus 158 ~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~ 237 (501)
-...-++.+++.|..|...+++.++.. .-.++++....|..++..++.- .-.-+.+++++.
T Consensus 88 ----------------~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~--r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ----------------YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNT--REANELLKEACE 148 (161)
T ss_dssp ----------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-H--HHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcch--hhHHHHHHHHHH
Confidence 344557788889999999999998876 4578888888888888665422 122344455554
Q ss_pred h
Q 010790 238 K 238 (501)
Q Consensus 238 ~ 238 (501)
+
T Consensus 149 k 149 (161)
T PF09205_consen 149 K 149 (161)
T ss_dssp T
T ss_pred h
Confidence 3
No 259
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.15 E-value=36 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010790 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYL 67 (501)
Q Consensus 30 I~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~ 67 (501)
|....+.|-+.++..++++|.+.|+..+...|..+|..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33455778888999999999999999999998888763
No 260
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=57.11 E-value=1.5e+02 Score=26.75 Aligned_cols=125 Identities=8% Similarity=0.054 Sum_probs=87.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCC
Q 010790 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (501)
Q Consensus 20 ~~p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~p 99 (501)
..++..|..+|+.+.+.|.... ...+...++-+|.......|-...... .....-|.+++..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~------~~~~Ql~lDMLkRL~~----- 90 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQY------PPAYQLGLDMLKRLGT----- 90 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccC------hHHHHHHHHHHHHhhh-----
Confidence 4556799999999999998664 556667787777666655543222111 0134557777777642
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 100 d~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
.+..++..+-..|+.-+|.++.... ... +......++.+..+.+|...=..||.....++
T Consensus 91 ---~~~~iievLL~~g~vl~ALr~ar~~-~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 ---AYEEIIEVLLSKGQVLEALRYARQY-HKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHc-CCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3667888999999999999999886 332 44455778899889999888777777766543
No 261
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.40 E-value=2.4e+02 Score=30.88 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=92.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 23 ~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~-~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
...-+.+...+.+.|..++|+++- +|+ .-|...|. .+ +++.|.++-.+. -++
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFelal~----lg--------rl~iA~~la~e~------~s~ 666 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQRFELALK----LG--------RLDIAFDLAVEA------NSE 666 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhhhhhhhhh----cC--------cHHHHHHHHHhh------cch
Confidence 345566666677777777666542 221 22333332 23 788888876665 467
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
.-|..|-++....|++..|.+.|... + -|..|+-.|...|+.+.-..+=..-.+.|. .|.-.-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a-~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~ 730 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA-R---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLA 730 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh-c---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHH
Confidence 78999999999999999999888776 3 356778888888888876666666666654 3444556
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 182 SAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
|...|++++++++|-+ .+..|..
T Consensus 731 ~~l~g~~~~C~~lLi~---t~r~peA 753 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS---TQRLPEA 753 (794)
T ss_pred HHHcCCHHHHHHHHHh---cCcCcHH
Confidence 6778888887777644 4444543
No 262
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.35 E-value=1.1e+02 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=26.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010790 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 148 ~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~ 202 (501)
...|+++.|..+.+.+. .||...|-+|-.. +.|..+++..-+.+|...|
T Consensus 50 mNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34566666665555442 5566666555333 3555555555555555544
No 263
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.35 E-value=24 Score=24.14 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=10.0
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 010790 145 FCFCENLEAEKAYEVEEHMG 164 (501)
Q Consensus 145 ~~~~~~g~~~~A~~lf~~M~ 164 (501)
.+|...||.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555444
No 264
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=56.29 E-value=28 Score=30.84 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.2
Q ss_pred eEEeCCCCCCCcHHHHHHHHhcCceEE-ecc
Q 010790 389 VLYMTPHGSNDDWYWLYAAVKLRCLLV-TND 418 (501)
Q Consensus 389 ~~~~t~~~~~DD~~~l~aa~~~~~~~v-snD 418 (501)
.|=++--|.|.|-++..-....+|+|| |||
T Consensus 128 RL~C~HKGTYADDClv~RV~qHkCYIVAT~D 158 (195)
T KOG3165|consen 128 RLPCTHKGTYADDCLVQRVTQHKCYIVATND 158 (195)
T ss_pred ccccccCCcchhhHHHHHHhhcceEEEEecc
Confidence 356778889999999999888899776 788
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=55.33 E-value=31 Score=22.09 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 173 QEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 173 ~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
.+++.|-..|...|+.++|..++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777776653
No 266
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=55.08 E-value=3.4 Score=35.78 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
.+.....+++.+...+..-+....|.++..|++.++.+..+++++.. .. .-...++..|-+.|.++.|.-++
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-~~-------yd~~~~~~~c~~~~l~~~a~~Ly 93 (143)
T PF00637_consen 22 QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-NN-------YDLDKALRLCEKHGLYEEAVYLY 93 (143)
T ss_dssp -GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-SS-------S-CTHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-cc-------cCHHHHHHHHHhcchHHHHHHHH
Confidence 56667777777777666667888888888888888777777777644 22 23345566666666666666666
Q ss_pred HHH
Q 010790 161 EHM 163 (501)
Q Consensus 161 ~~M 163 (501)
..+
T Consensus 94 ~~~ 96 (143)
T PF00637_consen 94 SKL 96 (143)
T ss_dssp HCC
T ss_pred HHc
Confidence 554
No 267
>PRK15331 chaperone protein SicA; Provisional
Probab=55.06 E-value=1e+02 Score=27.65 Aligned_cols=86 Identities=7% Similarity=-0.105 Sum_probs=43.1
Q ss_pred HhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010790 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (501)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a 191 (501)
-..|++++|..+|.-+ -..+. -+..-|..|=.+|=..++.++|...|...-..+. -|...+=-+-.+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L-~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFL-CIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHH-HHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3466777777776665 33222 1222222232333335666667666655443332 1222233344456666666777
Q ss_pred HHHHHHHHh
Q 010790 192 YQYLQKLRS 200 (501)
Q Consensus 192 ~~ll~~M~~ 200 (501)
...|..-..
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.48 E-value=2.1e+02 Score=31.88 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=76.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhCCC--CCCCChhhHHHHHHHHHHHHhC
Q 010790 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNL----RLSLHHFNALLYLCSDSAT--DPSSKDSALRHGFRVFDQMLSN 95 (501)
Q Consensus 22 p~~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv----~p~~~ty~~LL~~c~~~~~--~~~~k~~~~~~a~~lf~~M~~~ 95 (501)
..+.-.+-|.+|- |.+++|.++|-+|-++.+ +...--|-.++.++..++. +-..++..+...-+.|.+|
T Consensus 735 s~~~q~aei~~~~--g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~--- 809 (1189)
T KOG2041|consen 735 SKEQQRAEISAFY--GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM--- 809 (1189)
T ss_pred hHHHHhHhHhhhh--cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH---
Confidence 3344456666665 899999999999887753 2233445555665555441 1122222222222233333
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHH------HHHHHhHh-hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010790 96 NVIPNEASVTSVARLAASKNDGDYAF------VLIKRMNN-EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL 168 (501)
Q Consensus 96 g~~pd~~t~~~li~~~~~~g~~~~A~------~l~~~M~~-~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv 168 (501)
..|-.....|..+|+.+.-. +.|+++.. ...++-|..-.-.|-+++...|.-+.|.+.|-+- +.
T Consensus 810 ------~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~ 880 (1189)
T KOG2041|consen 810 ------MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL 880 (1189)
T ss_pred ------HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC
Confidence 24566666666666655322 22333310 1122223333344445666666666666554322 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010790 169 SLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (501)
Q Consensus 169 ~pd~~t~~~Li~~~~~~g~~~~a~~ll~~ 197 (501)
+ -+-+..|+.-.++.+|.++-++
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2233445555555555555443
No 269
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.87 E-value=2.2e+02 Score=27.71 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-HHH
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEF---NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQ-QEI 175 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~---gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~-gv~pd~-~t~ 175 (501)
...|+.-+..| +.|++..|..-|....+.. -..|+ .+==|-..+...|+.+.|-.+|..+... +-.|-. ..+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33666666653 4666777777777763322 11122 2223556777778888888777777553 222211 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 010790 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (501)
Q Consensus 176 ~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~ 210 (501)
-=|-....+.|+.++|...|+...+. .|+....
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~aA 251 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR--YPGTDAA 251 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCHHH
Confidence 44445566677888888888887766 6666553
No 270
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.09 E-value=30 Score=34.20 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHF 61 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty 61 (501)
.-||..|....+.||+++|+.|.+|.++.|+.--..||
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 37899999999999999999999999999985444444
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=52.89 E-value=3.7 Score=35.55 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSV 107 (501)
Q Consensus 28 ~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~l 107 (501)
.+|..+.+.+.+..+...++.+...+..-+....+.|+.+|.+.+ ..++..+++. . .+..-...+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~--------~~~~l~~~L~---~----~~~yd~~~~ 76 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD--------PYEKLLEFLK---T----SNNYDLDKA 76 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT--------TCCHHHHTTT---S----SSSS-CTHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC--------CchHHHHHcc---c----ccccCHHHH
Confidence 467778888899999999999998776677888999999998886 4455666655 2 111333468
Q ss_pred HHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010790 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (501)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~ 187 (501)
++.|-+.|.+++|..++..+ ....-. +..+...++++.|.+.+.+. ++...|..+++.|...+.
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~-~~~~~a---------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKL-GNHDEA---------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCC-TTHTTC---------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHhcchHHHHHHHHHHc-ccHHHH---------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 88888899999998888877 433211 11123445555555444332 356678888777766543
No 272
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.01 E-value=1.6e+02 Score=29.03 Aligned_cols=89 Identities=9% Similarity=0.039 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHh-hcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNN-EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~-~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
..=|.+++..++|.+++...-+--. ...++|. ...-.|--|.|.|+...+.++-.......-.-+...|.+++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3458899999999999887655411 1344444 445667778999999999988887765432234456999988887
Q ss_pred h-----cCChHHHHHHH
Q 010790 184 E-----TGRVEKVYQYL 195 (501)
Q Consensus 184 ~-----~g~~~~a~~ll 195 (501)
. .|..++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 6 68999998877
No 273
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=51.88 E-value=2e+02 Score=26.68 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (501)
Q Consensus 27 n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~ 106 (501)
.++..+..+.=|++.+..=-. .+-.+.|+...--.|-.+....| +..+|...|.+-..--+.-|....-.
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~--~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d~a~lLg 129 (251)
T COG4700 60 HTLLMALQQKLDPERHLREAT--EELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHDAAMLLG 129 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHH--HHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCCHHHHHH
Confidence 445555555556554432221 12234455444445555667777 78889999988776556678888888
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD---PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~---~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
+.++....+++.+|...++++ -+.. |.-++-. .+-..|.-.|....|+.-|+...+. .|+...-.-.-..++
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l-~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La 204 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDL-MEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLA 204 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHH-hhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 888888899999999999887 5543 4333322 2334566778888888888877765 344332222222334
Q ss_pred hcCChHHH----HHHHHHHHhC
Q 010790 184 ETGRVEKV----YQYLQKLRST 201 (501)
Q Consensus 184 ~~g~~~~a----~~ll~~M~~~ 201 (501)
+.|+.+++ .+++++....
T Consensus 205 ~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 205 KQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HhcchhHHHHHHHHHHHHHHhc
Confidence 45544444 4555555443
No 274
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.53 E-value=63 Score=33.39 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=6.8
Q ss_pred HHHHHHHhcCCHH
Q 010790 28 INLQSCTKSKDLT 40 (501)
Q Consensus 28 ~lI~~~~k~g~~~ 40 (501)
+.+...++.|+.+
T Consensus 37 tpL~~A~~~~~~~ 49 (413)
T PHA02875 37 SPIKLAMKFRDSE 49 (413)
T ss_pred CHHHHHHHcCCHH
Confidence 3444555566654
No 275
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.42 E-value=3.2e+02 Score=28.56 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=27.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010790 146 CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (501)
Q Consensus 146 ~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~ 197 (501)
-+...|..+.+..+++.-.. ..||.+..+.|-+.++....+.+|++.|..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34445555556655555433 245666666666666666666666555544
No 276
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.44 E-value=3.6e+02 Score=28.24 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=31.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 010790 147 FCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQ 196 (501)
Q Consensus 147 ~~~~g~~~~A~~lf~~M~~~gv~p-d~~t~~~Li~~~~~~g~~~~a~~ll~ 196 (501)
+...|..+.|.--|.+.... .| +..+|.-|+..|...|...+|.-+-+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 34566777777777665432 32 56688888888888888777765544
No 277
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.04 E-value=85 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 169 ~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
.|+...|..++.++...|+.++|..++.++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555544444443
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.63 E-value=1.8e+02 Score=27.14 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 118 DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~---gv~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
+.|++.|-.+ ...+.- +....-..|..|--..|.++|..++.+..+. +-.+|...+.+|.+.|-+.|+.+.|+
T Consensus 123 ~~A~~~fL~~-E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQL-EGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH-cCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455556555 444332 3333333444444566666666666655432 22556666667777766666666664
No 279
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=45.46 E-value=35 Score=20.04 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIK 125 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~ 125 (501)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666654
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=44.87 E-value=3.7e+02 Score=27.69 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=78.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCC-CCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010790 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDP-SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (501)
Q Consensus 35 k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~-~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~ 113 (501)
+.|+.++|+.++..+......+++-||..+-..|...-.++ +.....+++|.+.|.+=-+ +.||..+=-.++..+..
T Consensus 194 ~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 194 KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLML 271 (374)
T ss_pred cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHH
Confidence 38999999999999777777778888887755443321110 1111247888888886443 23444332222222333
Q ss_pred CCC----HHHHHHHH---HHhHhhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 114 KND----GDYAFVLI---KRMNNEFNVV---PRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 114 ~g~----~~~A~~l~---~~M~~~~gi~---P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
.|. -.+..++- ..+..+.|.. .+---+.+++.++.-.||.++|.+..+.|...
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 332 11223332 2221233322 34566689999999999999999999999866
No 281
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.88 E-value=4.3e+02 Score=28.23 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=65.9
Q ss_pred HHHHHHHH-HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 010790 85 GFRVFDQM-LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (501)
Q Consensus 85 a~~lf~~M-~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M 163 (501)
..+.+... ...|+..+......+++ ...|++..|+.++++. ...+ ....|+..+...+
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~-i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQA-IVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHH-HHhC--CCCcCHHHHHHHh----------------
Confidence 34444443 34677777777666654 3568999999999886 3221 1224444443222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010790 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKI 212 (501)
Q Consensus 164 ~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~ 212 (501)
|+. +...+..++++....+....|+.++.+|.+.|..|.......
T Consensus 244 ---g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l 288 (484)
T PRK14956 244 ---GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDS 288 (484)
T ss_pred ---CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 556677777777666666789999999999998887765433
No 282
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.75 E-value=1.2e+02 Score=31.28 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH--HH
Q 010790 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHH--FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA--SV 104 (501)
Q Consensus 29 lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~t--y~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~--t~ 104 (501)
.|...++.|+.+-+..++ +.|..|+... ..+.|+.++..+ . .++.+.+.+.|..|+.. ..
T Consensus 5 ~L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~--------~----~~~v~~Ll~~ga~~~~~~~~~ 68 (413)
T PHA02875 5 ALCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFR--------D----SEAIKLLMKHGAIPDVKYPDI 68 (413)
T ss_pred HHHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcC--------C----HHHHHHHHhCCCCccccCCCc
Confidence 455566778876554444 5677665432 233445444444 3 34566667777766543 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVS 182 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t--~~~Li~~~ 182 (501)
.+.+...+..|+.+.+..+++.- ....-..+..-. +.+...+..|+.+-+ +.+.+.|..|+... -.+.+...
T Consensus 69 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~-tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 69 ESELHDAVEEGDVKAVEELLDLG-KFADDVFYKDGM-TPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred ccHHHHHHHCCCHHHHHHHHHcC-CcccccccCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHH
Confidence 34566778899998887777654 211111111222 344445577776544 44455666554321 12334444
Q ss_pred HhcCChHHHHHHH
Q 010790 183 AETGRVEKVYQYL 195 (501)
Q Consensus 183 ~~~g~~~~a~~ll 195 (501)
+..|+.+-+..++
T Consensus 143 ~~~~~~~~v~~Ll 155 (413)
T PHA02875 143 VMMGDIKGIELLI 155 (413)
T ss_pred HHcCCHHHHHHHH
Confidence 5677765443333
No 283
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=42.89 E-value=84 Score=24.14 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.7
Q ss_pred HHHHhCCCH
Q 010790 109 RLAASKNDG 117 (501)
Q Consensus 109 ~~~~~~g~~ 117 (501)
...+..|+.
T Consensus 31 ~~A~~~~~~ 39 (89)
T PF12796_consen 31 HYAAENGNL 39 (89)
T ss_dssp HHHHHTTTH
T ss_pred HHHHHcCCH
Confidence 333444443
No 284
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=42.69 E-value=4.6e+02 Score=28.21 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 98 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
..|....-++|..++.+-.+.-...+..+| ...|- +-..|-.++..|..+ .-+.-..+++++.+..+. |++--..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~-l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRV-LEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHH-HHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 345556777888888888888888888887 56554 667777788888777 456666777777666543 3333334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
|...|-+ ++..++..+|.+....
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH
Confidence 4444433 6666666666665444
No 285
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.69 E-value=6.5e+02 Score=29.91 Aligned_cols=170 Identities=13% Similarity=0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~ 104 (501)
++..+.+++.=...+.+|..+.-+|.-.|-+-+..----++..|..-+ ++.|..-++.|...-..++...+
T Consensus 525 ~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~---------I~gae~~irkMl~LVWskd~~i~ 595 (1251)
T KOG0414|consen 525 LVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFG---------IDGAEFGIRKMLPLVWSKDKEIR 595 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC---------CCcHHHHHHHHhhhhhCCCccHH
Confidence 344556666666677888888888887776444443334455777766 34466667777665455665566
Q ss_pred HHHHHHHHh----CC---CHHH----HHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHH--HHHHHH--HHCCCC
Q 010790 105 TSVARLAAS----KN---DGDY----AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY--EVEEHM--GLMGLS 169 (501)
Q Consensus 105 ~~li~~~~~----~g---~~~~----A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~--~lf~~M--~~~gv~ 169 (501)
.+++.+|-. .. ...+ |..++.-+ ....+ -+..+..-+|..+...|.++.+. .+|+.. ...|..
T Consensus 596 e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~-~~~s~-~d~~slE~vl~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~ 673 (1251)
T KOG0414|consen 596 EAVENAYKQLYFRPDGNSKASEASSIAQNLSKLL-IDASI-GDLTSLEEVLCELVARGYIDAAVINKLWEIFTLQKKGTT 673 (1251)
T ss_pred HHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHH-hcccc-cchhhHHHHHHHHHhCCCccHHHHHHHHHHHHHHhccCc
Confidence 666666544 32 3333 66666666 44433 57778888899999999988865 444433 333443
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 010790 170 LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (501)
Q Consensus 170 pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p 205 (501)
-...--..+|-+....+..+-+..=++.+.+-|+.+
T Consensus 674 ~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg~ 709 (1251)
T KOG0414|consen 674 NEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLGE 709 (1251)
T ss_pred hhhhccceeehhhhhccChhhhhhhhHHHHHhccCc
Confidence 333333334444444555555555555555555444
No 286
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=42.58 E-value=16 Score=27.13 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=23.9
Q ss_pred HHHHHHhcCceEEeccchhhhHhhhcCchhHHHhhhccEEE
Q 010790 403 WLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQVH 443 (501)
Q Consensus 403 ~l~aa~~~~~~~vsnD~~Rdh~~~~~~~~~f~rW~~~hq~~ 443 (501)
|..+|-..+++-+|-|+-|.|++-+ .+..||.+||--
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~~ 56 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQTE 56 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH---
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCCC
Confidence 4456666788999999999999954 689999999963
No 287
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.76 E-value=3.4e+02 Score=26.42 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLM----GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 137 ~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~----gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
..-|+..++.| +.|++..|...|...... -..|+..-| |-..+...|+.++|..+|..+.+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHH
Confidence 34666666665 566677777777666554 133343333 55666666777777777766654
No 288
>PF13470 PIN_3: PIN domain
Probab=41.41 E-value=22 Score=29.54 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHhcCc-eEEeccc
Q 010790 397 SNDDWYWLYAAVKLRC-LLVTNDE 419 (501)
Q Consensus 397 ~~DD~~~l~aa~~~~~-~~vsnD~ 419 (501)
..||..++.+|+..++ +|||+|.
T Consensus 95 D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 95 DPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CccHHHHHHHHHHcCCCEEEeCCC
Confidence 6789999999999865 9999995
No 289
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.32 E-value=3.3e+02 Score=30.18 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=62.3
Q ss_pred HHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHhHhhcCCC
Q 010790 63 ALLYLCSDSATDPSSKDSALRHGFRVFDQMLS--NNVIPNEASVTSVARLAASKNDGD------YAFVLIKRMNNEFNVV 134 (501)
Q Consensus 63 ~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~--~g~~pd~~t~~~li~~~~~~g~~~------~A~~l~~~M~~~~gi~ 134 (501)
+|+.+|...+ ++.++.++++.... .|-+.=...||..|+-..+.|.++ .|.+++++. . +.
T Consensus 33 sl~eacv~n~--------~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-~---ln 100 (1117)
T COG5108 33 SLFEACVYNG--------DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-R---LN 100 (1117)
T ss_pred HHHHHHHhcc--------hHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-h---cC
Confidence 7888999999 89999999998765 455555667899999999999765 455666555 3 44
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 010790 135 PRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (501)
Q Consensus 135 P~~~ty~~lI~~~~~~g~~~~A~~lf~~M 163 (501)
-|..||..|+.+...--.-....-+..+.
T Consensus 101 ~d~~t~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 101 GDSLTYALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred CcchHHHHHHHhhcChHhHHhccHHHHHH
Confidence 58889988888765433333333334333
No 290
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=40.53 E-value=2.2e+02 Score=28.61 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCccEEEeCc----cccccccccCCCCcCchhHHHHHHHHHHhcCCcceEEEecccccCCCCCCcchHHH
Q 010790 305 SEFQDWLEKNANYEAIVDGA----NIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNL 380 (501)
Q Consensus 305 ~~F~~~l~~~~~~D~v~Dg~----Nv~~~~~~~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 380 (501)
+.+.+++.+.+.|=++||.. ++.+..-+ +......++++|.+++| +++.++.+..... ....--.-+
T Consensus 127 ~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~D------n~~~~~~a~~~L~~~G~-~~i~~i~~~~~~~--~~~~R~~Gf 197 (333)
T COG1609 127 DSLLELLAAAGIPVVVIDRSPPGLGVPSVGID------NFAGAYLATEHLIELGH-RRIAFIGGPLDSS--ASRERLEGY 197 (333)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCCCEEEEC------hHHHHHHHHHHHHHCCC-ceEEEEeCCCccc--cHhHHHHHH
Confidence 34556666667788888853 23222211 35688999999999965 4555555443111 101112345
Q ss_pred HHHHHhcCeE-----EeCCCCCCCcHHHHHHHHh------cCceEEeccchhhhHh
Q 010790 381 VEEWNEKGVL-----YMTPHGSNDDWYWLYAAVK------LRCLLVTNDEMRDHIF 425 (501)
Q Consensus 381 ~~~~~~~~~~-----~~t~~~~~DD~~~l~aa~~------~~~~~vsnD~~Rdh~~ 425 (501)
.+.+.+.+.- +..-..+..+-+-.-..+- .+++|.+||.|=--..
T Consensus 198 ~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l 253 (333)
T COG1609 198 RAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEPRPTAIFCANDLMALGAL 253 (333)
T ss_pred HHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHH
Confidence 5666666532 1111113333332222221 3699999998865544
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.28 E-value=62 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=11.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHh
Q 010790 107 VARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M 127 (501)
|.++|...|+.+.|.+++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 445555555555555555555
No 292
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=39.55 E-value=37 Score=31.73 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhHH-------hhHHHHHHHHHHcCCccEEEeCccccccccccCCCCcCchhHHHHHHH
Q 010790 277 VDIDDAETERFAQSVAALAMEREVK-------ANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKK 349 (501)
Q Consensus 277 ~~l~~~e~~~~~~~i~~~a~~g~~~-------~~l~~F~~~l~~~~~~D~v~Dg~Nv~~~~~~~~~~~~~~~~i~~vv~~ 349 (501)
|+++++|..+=+.....+..++... .+++.|... .+-.|++||=|. ....|++.+|..+.+-
T Consensus 65 f~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gi--dTs~pn~VVigl---------ape~F~y~~ln~AFrv 133 (262)
T KOG3040|consen 65 FDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGI--DTSDPNCVVIGL---------APEGFSYQRLNRAFRV 133 (262)
T ss_pred CCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCc--cCCCCCeEEEec---------CcccccHHHHHHHHHH
Confidence 6777777655555555554443322 455555532 223667766432 3557999999999999
Q ss_pred HHHhcCCcceEEEecccccC----CCCCCcchHHHHHHHHhcCeEEeCCCCCCCcHHHHHHHHhc------CceEEeccc
Q 010790 350 LYERSGNKWPLVILHNKRLR----SLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKL------RCLLVTNDE 419 (501)
Q Consensus 350 ~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~t~~~~~DD~~~l~aa~~~------~~~~vsnD~ 419 (501)
|.+. .+++||-+|+.+.- +..-.+ -.++..|+=..-+=.|--|-- .+|+..-|+.. .|+.|-.|.
T Consensus 134 L~e~--~k~~LIai~kgryykr~~Gl~lgp--G~fv~aLeyatg~~a~vvGKP-~~~fFe~al~~~gv~p~~aVMIGDD~ 208 (262)
T KOG3040|consen 134 LLEM--KKPLLIAIGKGRYYKRVDGLCLGP--GPFVAALEYATGCEATVVGKP-SPFFFESALQALGVDPEEAVMIGDDL 208 (262)
T ss_pred HHcC--CCCeEEEecCceeeeeccccccCc--hHHHHHhhhccCceEEEecCC-CHHHHHHHHHhcCCChHHheEEcccc
Confidence 9986 56777777766532 221111 244444443322222222222 34555555653 467777776
Q ss_pred hhhh
Q 010790 420 MRDH 423 (501)
Q Consensus 420 ~Rdh 423 (501)
+-|-
T Consensus 209 ~dDv 212 (262)
T KOG3040|consen 209 NDDV 212 (262)
T ss_pred ccch
Confidence 6664
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.18 E-value=5.4e+02 Score=27.98 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=97.0
Q ss_pred HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 010790 33 CTKSKDLTTAISLYESAHS-------QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~-------~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~ 105 (501)
+....|++.|+..|..+.+ .|.+ ....-|=.+|.+... .... +.+.|+.+|..--..|. |+...+-
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~-~~~~--d~~~A~~~~~~aA~~g~-~~a~~~l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLG-VEKI--DYEKALKLYTKAAELGN-PDAQYLL 331 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCC-Cccc--cHHHHHHHHHHHHhcCC-chHHHHH
Confidence 5677899999999998876 5532 233344444554431 1100 46778888887766665 4555444
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHH-HH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010790 106 SVARLAAS-KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC-FC--ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (501)
Q Consensus 106 ~li~~~~~-~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~-~~--~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~ 181 (501)
..+..... -.+...|.++|... -..|. ....|...+.- .. -..+.+.|+..|....++|..........+ ..
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~A-a~~G~--~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~-~~ 407 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLA-AKAGH--ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAF-YE 407 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHH-HH
Confidence 44444443 34678999999988 67776 22233222211 11 233688888888888888733223322222 22
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 182 SAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (501)
Q Consensus 182 ~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i 213 (501)
+.. +..+.++-....+...+..........+
T Consensus 408 ~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l 438 (552)
T KOG1550|consen 408 YGV-GRYDTALALYLYLAELGYEVAQSNAAYL 438 (552)
T ss_pred Hcc-ccccHHHHHHHHHHHhhhhHHhhHHHHH
Confidence 323 6677777777777666655444443333
No 294
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.02 E-value=3.9e+02 Score=26.24 Aligned_cols=83 Identities=10% Similarity=-0.057 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHH
Q 010790 81 ALRHGFRVFDQMLSNNV----IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKA 156 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~----~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A 156 (501)
....|.++|++....+. ..+.-.-.+++...++.|..+.-..+++.. +.. ++...-..+|.+.+...+.+..
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~-~~~---~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELY-KNS---TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHH-HTT---STHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHH-hcc---CCHHHHHHHHHhhhccCCHHHH
Confidence 46667777777666311 334445556666667777665555555555 333 3556667777777777777776
Q ss_pred HHHHHHHHHCC
Q 010790 157 YEVEEHMGLMG 167 (501)
Q Consensus 157 ~~lf~~M~~~g 167 (501)
.++++.....+
T Consensus 221 ~~~l~~~l~~~ 231 (324)
T PF11838_consen 221 KRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHCTS
T ss_pred HHHHHHHcCCc
Confidence 67776666643
No 295
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=36.94 E-value=5e+02 Score=26.98 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLH--HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~g-v~p~~~--ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~ 101 (501)
.+.+.+...|..||.+.|++|.+.-+... +.++.. .=..||.+-+...++. +...|.+.-.+ .....||.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-----dp~~Ar~~A~~--a~KL~pdl 262 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-----DPASARDDALE--ANKLAPDL 262 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHH--HhhcCCcc
Confidence 45789999999999999999999877544 455533 4556666444333222 23334433222 23345554
Q ss_pred HHH-HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHCCCCCCHHHHH
Q 010790 102 ASV-TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY----EVEEHMGLMGLSLEQQEIA 176 (501)
Q Consensus 102 ~t~-~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~----~lf~~M~~~gv~pd~~t~~ 176 (501)
+.- -.-.+++.+.|+..++-.+++.+ =+.. |....+ .+-.+.+.||.-... +-++.|+.. +..+--
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~a-WK~e--PHP~ia--~lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~ 333 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETA-WKAE--PHPDIA--LLYVRARSGDTALDRLKRAKKLESLKPN----NAESSL 333 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHH-HhcC--CChHHH--HHHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHH
Confidence 432 23456788899999999999999 5543 443332 233455667643322 122333322 334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i 213 (501)
++..+-...|++..|..--+-.. ...|.++.|-.+
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLl 368 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLL 368 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHH
Confidence 56666666777665543322221 124555554433
No 296
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.68 E-value=66 Score=31.87 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=20.1
Q ss_pred CChhh-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010790 135 PRLRT-YDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (501)
Q Consensus 135 P~~~t-y~~lI~~~~~~g~~~~A~~lf~~M~~~gv~ 169 (501)
||..+ ||..|....+.||+++|+.|.+|-.+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44433 346666666666666666666666665553
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.27 E-value=3.1e+02 Score=24.33 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=40.1
Q ss_pred HhCCCHHHHHHHHHHhHhhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 112 ASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~---~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
...++++++..+++.| . -+.|+. .++-.+|. ...|++++|..+|++..+.+
T Consensus 21 L~~~d~~D~e~lLdAL-r--vLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDAL-R--VLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHH-H--HhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccC
Confidence 3489999999999999 3 344554 56666654 57999999999999998875
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.99 E-value=5.7e+02 Score=28.14 Aligned_cols=135 Identities=19% Similarity=0.088 Sum_probs=92.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010790 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAA 112 (501)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~ 112 (501)
..+.|+++.|.++-.+.. ++.-|..|=.+....+ .+..|.+-|..-. -|..|+-++.
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~--------~l~lA~EC~~~a~---------d~~~LlLl~t 703 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG--------ELPLASECFLRAR---------DLGSLLLLYT 703 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc--------cchhHHHHHHhhc---------chhhhhhhhh
Confidence 456799999988876643 3478999988666666 6888888877643 3678899999
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
..|+.+.-..+-... ++.|. .|...-+|...|+++++.+++.+-.+ -|.. +| +++.-.++++-
T Consensus 704 ~~g~~~~l~~la~~~-~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r---~peA----al---~ArtYlps~vs 766 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLA-KKQGK------NNLAFLAYFLSGDYEECLELLISTQR---LPEA----AL---FARTYLPSQVS 766 (794)
T ss_pred hcCChhHHHHHHHHH-Hhhcc------cchHHHHHHHcCCHHHHHHHHHhcCc---CcHH----HH---HHhhhChHHHH
Confidence 999988777776766 65554 35666778899999999998765422 2222 11 23344456666
Q ss_pred HHHHHHHhCCCCCCH
Q 010790 193 QYLQKLRSTVRCVNE 207 (501)
Q Consensus 193 ~ll~~M~~~~~~p~~ 207 (501)
+++...++.-...++
T Consensus 767 ~iv~~wk~~l~k~~~ 781 (794)
T KOG0276|consen 767 RIVELWKEDLSKVSE 781 (794)
T ss_pred HHHHHHHHHhhhhhh
Confidence 777666655444444
No 299
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=35.47 E-value=2.9e+02 Score=23.79 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~-gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
.+......+...++...+...+...... ........+..+.......+ ....+.+.+.........+. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~ 131 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG--------KYEEALELLEKALALDPDPD-LA 131 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHcCCCCcc-hH
Confidence 4455555556666666666666555432 11112222322222222222 34556666655544333221 11
Q ss_pred HHHHHH-HHHhCCCHHHHHHHHHHhHhhcCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010790 104 VTSVAR-LAASKNDGDYAFVLIKRMNNEFNVVP----RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (501)
Q Consensus 104 ~~~li~-~~~~~g~~~~A~~l~~~M~~~~gi~P----~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~L 178 (501)
...... .+...|+.+.|...+.+. .. ..| ....+......+...++.+.|...+..............+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKA-LE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNL 208 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHh
Confidence 222222 566666666666666665 33 112 2223333333344556666666666665543211124455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 010790 179 LKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~M~~ 200 (501)
-..+...+..+.+...+.....
T Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 209 GLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hHHHHHcccHHHHHHHHHHHHh
Confidence 5555556666666666655544
No 300
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.43 E-value=1.5e+02 Score=23.64 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh
Q 010790 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (501)
Q Consensus 25 ~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~ 94 (501)
.|...+...... ..+++ +||+-....|+..|+..|..++.+..-.- ..+...+++..|..
T Consensus 12 ~~k~~~~rk~~L-s~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nV--------sP~AI~qmLK~m~s 71 (88)
T PF12926_consen 12 VYKYSLRRKKVL-SAEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNV--------SPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHHhcc-CHHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCC--------CHHHHHHHHHHHHc
Confidence 455544333222 22333 89999999999999999999999776665 68888889888865
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=35.40 E-value=40 Score=20.26 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHh
Q 010790 107 VARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M 127 (501)
+..++.+.|+.++|.+.|+++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 334455566677777776666
No 302
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.30 E-value=1.3e+02 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
-|.+|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999877
No 303
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=34.84 E-value=3.8e+02 Score=24.94 Aligned_cols=119 Identities=10% Similarity=-0.085 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHH
Q 010790 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQ 173 (501)
Q Consensus 97 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~---gv~pd~~ 173 (501)
..|++..--.|..+..+.|+..+|...|.+- ..--+.-|....-.+-.+....++...|...++.+-+. +-.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 4588888888999999999999999999998 43334456666667777778889999999999888765 33455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
+.-.+-+.|...|..+.|..-|+...+. .|+.......-.|.++.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~q 206 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQ 206 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4456677888899999999999988776 67766655555565443
No 304
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=3e+02 Score=29.53 Aligned_cols=98 Identities=12% Similarity=0.009 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHH
Q 010790 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~ 158 (501)
|+++.|+.+|.+-.... ++|.+.|+.=..+|+..|++++|++=-.+- ..+.|+. .-|+-.=.++.-.|++++|..
T Consensus 16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 37999999999876643 348999999999999999999998765554 4455775 677777777778899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 010790 159 VEEHMGLMGLSLEQQEIAALLKVS 182 (501)
Q Consensus 159 lf~~M~~~gv~pd~~t~~~Li~~~ 182 (501)
-|.+=.+..- -+...++-|..++
T Consensus 92 ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 92 AYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhhcCC-chHHHHHhHHHhh
Confidence 9987655432 2455566666655
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.28 E-value=4.1e+02 Score=30.22 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
.+.+-..+++.+.+.|.. +.-.-+.||.+|.+.++.+.-.++.+.. . .|.. .+-....+.-+-+.+-.+.|..+=
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~-~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC-D-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC-C-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 445555566666666665 2333456777777777777766666655 3 2221 112233444444555555555443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010790 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (501)
Q Consensus 161 ~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M 198 (501)
..-.. .+.....++. ..+++++|+..+..|
T Consensus 487 ~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 32211 2223333332 245667776666554
No 306
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.23 E-value=2.6e+02 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGL 165 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~ 165 (501)
.-|..|+.-|-..|..++|.+++..+..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3689999999999999999999999876
No 307
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.96 E-value=1.7e+02 Score=29.14 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHH----------HcCCHHH
Q 010790 86 FRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC----------ENLEAEK 155 (501)
Q Consensus 86 ~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~----------~~g~~~~ 155 (501)
.++|+.|.+.++.|.-.+|-=+.-.+++.=.+.+...+++.+ -.- |.. |..|+..|| -.||+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl-~sD---~~r--fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL-LSD---PQR--FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH-hcC---hhh--hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 567777777777777777666666666777777777777766 332 222 444444444 3577777
Q ss_pred HHHHHHHH
Q 010790 156 AYEVEEHM 163 (501)
Q Consensus 156 A~~lf~~M 163 (501)
..++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 77776654
No 308
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.94 E-value=2.6e+02 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 010790 105 TSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M 127 (501)
..+|.-|...++.++|.+-+.++
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Confidence 34555555566666666666655
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.51 E-value=2.9e+02 Score=26.30 Aligned_cols=77 Identities=10% Similarity=-0.015 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 010790 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLK 180 (501)
Q Consensus 103 t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~--gv~pd~~t~~~Li~ 180 (501)
|.+.-|+.+.+.+.+.+|+.+..+-++.. +.|.-+-..+++-||-.|++++|..-++-.-.. ...+...+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455666667777888887776652332 124455566777888888888877544433221 23344556666665
Q ss_pred H
Q 010790 181 V 181 (501)
Q Consensus 181 ~ 181 (501)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 310
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.43 E-value=1.8e+02 Score=25.39 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccC
Q 010790 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 159 lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~ 220 (501)
+-+.+..+|+.++.. =.++++.+.+.+..-.|.++++++++.+-..+.+|.-..+..|...
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 445566777765543 4567777777777788999999999888888888888888888544
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.12 E-value=3.9e+02 Score=24.55 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChh-hHHHHHHHH--HHcCCHHH
Q 010790 81 ALRHGFRVFDQMLSNNVI--PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR-TYDPALFCF--CENLEAEK 155 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~--pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~lI~~~--~~~g~~~~ 155 (501)
..++|+.-|.++.+.|.. |-.. ---+....+..|+...|...|+++ ....-.|-.. -..-|=.+| ..+|.++.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA-~mr~at~~a~kgdta~AV~aFdei-a~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLA-RMRAATLLAQKGDTAAAVAAFDEI-AADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHH-HHHHHHHHhhcccHHHHHHHHHHH-hccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 588999999999987765 2221 112233467799999999999999 4443334432 333333444 35777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 010790 156 AYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 156 A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~ 207 (501)
.....+-+...+-......=.+|--+--+.|++.+|..+|..+....-.|-.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 7766666544443333444556655666899999999999998876555543
No 312
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.09 E-value=1.7e+02 Score=26.68 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
...+.......+.+......+.+.+.....|+..+|..++..+...|+.++|..+..++..-
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445677777777666666334566799999999999999999999999999988753
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.03 E-value=6.3e+02 Score=28.43 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 83 RHGFRVFDQ-MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 83 ~~a~~lf~~-M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
++....+.. +...|+..+......+++.. .|++..|..+++++
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqa 224 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQA 224 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 333344433 33467777777777777654 58888888888776
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=32.53 E-value=47 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHH
Q 010790 99 PNEASVTSVARLAASKNDGDYAF 121 (501)
Q Consensus 99 pd~~t~~~li~~~~~~g~~~~A~ 121 (501)
-|..+|+.+-..|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36888999999999999999986
No 315
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.49 E-value=1.9e+02 Score=29.23 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=61.8
Q ss_pred cCchhHHHHHHHHHHhcCCcceEEEecccccCC-CC-CCcchHHHHHHHHhcCe--E-EeCCCCCCCcHHHHHHHHhcCc
Q 010790 338 FSVPQLDAVVKKLYERSGNKWPLVILHNKRLRS-LW-ENPSHRNLVEEWNEKGV--L-YMTPHGSNDDWYWLYAAVKLRC 412 (501)
Q Consensus 338 ~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~--~-~~t~~~~~DD~~~l~aa~~~~~ 412 (501)
-+...|+.+|+++.+. |..-++++|- .+. |. .+.-+...|..+++.-. + | + ....+...-.||+..++
T Consensus 144 ~t~~Ei~~Av~~i~~~--g~~~i~LlhC--~s~YP~~~~~~nL~~i~~lk~~f~~pVG~-S--DHt~G~~~~~aAva~GA 216 (327)
T TIGR03586 144 ATLEEIQEAVEACREA--GCKDLVLLKC--TSSYPAPLEDANLRTIPDLAERFNVPVGL-S--DHTLGILAPVAAVALGA 216 (327)
T ss_pred CCHHHHHHHHHHHHHC--CCCcEEEEec--CCCCCCCcccCCHHHHHHHHHHhCCCEEe-e--CCCCchHHHHHHHHcCC
Confidence 3688999999999976 4456888884 333 21 12234455566655432 2 2 2 24455788889998877
Q ss_pred eEE----eccch---hhhHhhhcCchhHHHhhhccE
Q 010790 413 LLV----TNDEM---RDHIFELLGSNFFLKWKERHQ 441 (501)
Q Consensus 413 ~~v----snD~~---Rdh~~~~~~~~~f~rW~~~hq 441 (501)
.|| |-|.= -||.+ .++|..|.+|.+.=+
T Consensus 217 ~iIEkH~tld~~l~G~D~~~-Sl~p~e~~~lv~~ir 251 (327)
T TIGR03586 217 CVIEKHFTLDRSDGGVDSAF-SLEPDEFKALVKEVR 251 (327)
T ss_pred CEEEeCCChhhcCCCCChhc-cCCHHHHHHHHHHHH
Confidence 766 55653 59987 568888887776543
No 316
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=31.95 E-value=1.3e+02 Score=25.49 Aligned_cols=26 Identities=23% Similarity=-0.079 Sum_probs=22.3
Q ss_pred CCCCCCcHHHHHHHHhcCceEEeccc
Q 010790 394 PHGSNDDWYWLYAAVKLRCLLVTNDE 419 (501)
Q Consensus 394 ~~~~~DD~~~l~aa~~~~~~~vsnD~ 419 (501)
...+.+|..++-.|...++.+||+|.
T Consensus 101 ~~~~~~D~~i~a~A~~~~~~lvT~D~ 126 (142)
T TIGR00028 101 GGRLVTDAHLAALAREHGAELVTFDR 126 (142)
T ss_pred CCCCchHHHHHHHHHHcCCEEEecCC
Confidence 34578999999999998899999994
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.60 E-value=1.2e+02 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
+|..+-..|...|+.++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777766543
No 318
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=31.58 E-value=38 Score=29.31 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCCCCCCcHHHHHHHHhcCceEEeccc
Q 010790 393 TPHGSNDDWYWLYAAVKLRCLLVTNDE 419 (501)
Q Consensus 393 t~~~~~DD~~~l~aa~~~~~~~vsnD~ 419 (501)
+++...||+-++-.|+..+|.|.|+|.
T Consensus 87 ~~~~D~~D~p~vALaL~l~~~IWT~Dk 113 (133)
T PF10130_consen 87 IRDRDPDDWPFVALALQLNAPIWTEDK 113 (133)
T ss_pred hcCCCcchHHHHHHHHHcCCCeecCcH
Confidence 455588999999999999999999995
No 319
>PRK12798 chemotaxis protein; Reviewed
Probab=31.42 E-value=6.2e+02 Score=26.41 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChh
Q 010790 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA-SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (501)
Q Consensus 60 ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (501)
...++|++.+.++ -++.+.+...+..++.- ...--+.+|. .|+.++|.+.+..+ ....+.+.+.
T Consensus 84 v~Aa~iy~lSGGn-------------P~vlr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i-~~~~l~~~lg 148 (421)
T PRK12798 84 VDAALIYLLSGGN-------------PATLRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGV-APEYLPAELG 148 (421)
T ss_pred hhHHHhhHhcCCC-------------HHHHHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcC-ChhhcCchhh
Confidence 4567777777765 34566666666654422 2222233333 89999999999999 7788888999
Q ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010790 139 TYDPALFCFCE-NLEAEKAYEVEEHMGLM--GLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (501)
Q Consensus 139 ty~~lI~~~~~-~g~~~~A~~lf~~M~~~--gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~ 197 (501)
-|-+|+.+-.- ..|..+|.++|+.-.-. |--..+....--|-...+.|+.+++..+-..
T Consensus 149 ~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~ 210 (421)
T PRK12798 149 AYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARN 210 (421)
T ss_pred hHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHH
Confidence 99999988665 45789999999886532 2222334444455667788998888766543
No 320
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.32 E-value=6.6e+02 Score=28.72 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010790 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (501)
Q Consensus 171 d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~ 215 (501)
|...+..|++.+. .++..+++.++++|...|..+.......+..
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~ 288 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSFSTALQDLASL 288 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4445556666544 4889999999999999888776555444433
No 321
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=31.11 E-value=34 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHcCCccEEEeCcccccc
Q 010790 302 ANFSEFQDWLEKNANYEAIVDGANIGLY 329 (501)
Q Consensus 302 ~~l~~F~~~l~~~~~~D~v~Dg~Nv~~~ 329 (501)
++++.|++||+..++|-..||++++--.
T Consensus 57 ~~vd~mk~wl~~~gsP~s~I~~~ef~n~ 84 (98)
T KOG3360|consen 57 EKVDEMKEWLLTRGSPVSAIDRAEFSNQ 84 (98)
T ss_pred HHHHHHHHHHHhcCChhHheeeeeeccc
Confidence 7889999999999999999999998543
No 322
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=31.06 E-value=1.2e+02 Score=23.77 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=23.8
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCCh-hhHHHHHHHHHHcCCHHHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~lI~~~~~~g~~~~A~~ 158 (501)
...+-++|+..+....++..-.|+. .+...|+.+|+..|+..++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665552222111222 556666667766666665443
No 323
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=5.7e+02 Score=26.44 Aligned_cols=105 Identities=10% Similarity=-0.060 Sum_probs=70.8
Q ss_pred HHHhCCCHHHHHHHHHHhHhh----cCC---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010790 110 LAASKNDGDYAFVLIKRMNNE----FNV---------VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (501)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~----~gi---------~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~ 176 (501)
.|.+.|++..|...|+..+.- .+. ...+.+++.|-.+|.+.++...|.+.-+.....+ .+|+-..=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 566778888887777653110 111 1345678888889999999999998877776543 22443333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f 217 (501)
-=-.+|...|+++.|...|.++.+- .|+......-+..|
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3345788889999999999999865 77766654444444
No 324
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.58 E-value=2.3e+02 Score=28.58 Aligned_cols=97 Identities=18% Similarity=0.064 Sum_probs=59.9
Q ss_pred cCchhHHHHHHHHHHhcCCcc--eEEEecccccCCCCCCcchHHHHHHHHhcCeEEeCCC---CCCCcHHHHHHHHhcCc
Q 010790 338 FSVPQLDAVVKKLYERSGNKW--PLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYMTPH---GSNDDWYWLYAAVKLRC 412 (501)
Q Consensus 338 ~~~~~i~~vv~~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~---~~~DD~~~l~aa~~~~~ 412 (501)
-+...|+.+|+.+++. |.. -++++|--.--....+.-+...|..+++.- -+|- ....+...-.||+..++
T Consensus 143 atl~Ei~~Av~~i~~~--G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f---~~pVG~SdHt~G~~~~~aAvalGA 217 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDA--GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF---DLPVGYSDHTLGIEAPIAAVALGA 217 (329)
T ss_pred CCHHHHHHHHHHHHHc--CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh---CCCEEECCCCccHHHHHHHHHcCC
Confidence 3678999999999876 333 377777432111111223445556555542 2222 24445677788888877
Q ss_pred eEE----eccchh---hhHhhhcCchhHHHhhhcc
Q 010790 413 LLV----TNDEMR---DHIFELLGSNFFLKWKERH 440 (501)
Q Consensus 413 ~~v----snD~~R---dh~~~~~~~~~f~rW~~~h 440 (501)
.|| |-|.=. ||.+ .++|..|.+|.+.=
T Consensus 218 ~iIEkH~tldk~~~G~D~~~-Sl~p~el~~lv~~i 251 (329)
T TIGR03569 218 TVIEKHFTLDKNLPGPDHKA-SLEPDELKEMVQGI 251 (329)
T ss_pred CEEEeCCChhhcCCCCChhh-cCCHHHHHHHHHHH
Confidence 665 556554 9988 56888888887653
No 325
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.38 E-value=97 Score=23.79 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH---HHHHH
Q 010790 31 QSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SVTSV 107 (501)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~---t~~~l 107 (501)
...++.|+++-...+++ .+..++. -.++|..++.... .++++.+.+.|..++.. -+|.|
T Consensus 2 ~~A~~~~~~~~~~~ll~----~~~~~~~-~~~~l~~A~~~~~-------------~~~~~~Ll~~g~~~~~~~~~g~t~L 63 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLE----KGADINL-GNTALHYAAENGN-------------LEIVKLLLENGADINSQDKNGNTAL 63 (89)
T ss_dssp HHHHHTTTHHHHHHHHH----TTSTTTS-SSBHHHHHHHTTT-------------HHHHHHHHHTTTCTT-BSTTSSBHH
T ss_pred HHHHHcCCHHHHHHHHH----CcCCCCC-CCCHHHHHHHcCC-------------HHHHHHHHHhcccccccCCCCCCHH
Confidence 34567777765444444 4544443 2235555665554 56777778888877654 34444
Q ss_pred HHHHHhCCCHHHHHHHHHHhHhhcCCCCCh
Q 010790 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (501)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (501)
.. .+..|+.+-+ +-+ .+.|..|+.
T Consensus 64 ~~-A~~~~~~~~~----~~L-l~~g~~~~~ 87 (89)
T PF12796_consen 64 HY-AAENGNLEIV----KLL-LEHGADVNI 87 (89)
T ss_dssp HH-HHHTTHHHHH----HHH-HHTTT-TTS
T ss_pred HH-HHHcCCHHHH----HHH-HHcCCCCCC
Confidence 44 5666665543 444 444555543
No 326
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=30.28 E-value=5.1e+02 Score=25.07 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=97.3
Q ss_pred CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhCCCCCCCChhhHHHHHHHHHHHHh
Q 010790 19 NPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALL---YLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (501)
Q Consensus 19 ~~~p~~-~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL---~~c~~~~~~~~~k~~~~~~a~~lf~~M~~ 94 (501)
...|.. .|+.-+. -.+.|++++|.+.|+.+..+- +-++.+=.++| .+.-+.+ +.++|+...++...
T Consensus 30 ~~~p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~--------~y~~A~~~~drFi~ 99 (254)
T COG4105 30 YNLPASELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNG--------EYDLALAYIDRFIR 99 (254)
T ss_pred cCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHH
Confidence 444554 5555555 457899999999999998543 33444444444 3444555 79999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhHhhc-CCCCChh------h----HH--------HHHHHHH
Q 010790 95 NNVIPNEASVTSVARLAAS-------KNDGDYAFVLIKRMNNEF-NVVPRLR------T----YD--------PALFCFC 148 (501)
Q Consensus 95 ~g~~pd~~t~~~li~~~~~-------~g~~~~A~~l~~~M~~~~-gi~P~~~------t----y~--------~lI~~~~ 148 (501)
....-..+-|-.-|++.+. ..|...+.+-|..| +.. .--||.. . .+ .+-.-|.
T Consensus 100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f-~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAF-KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHH-HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444334456677777665 23444555555544 221 1114431 1 11 1222366
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 149 ENLEAEKAYEVEEHMGLMGLSL---EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 149 ~~g~~~~A~~lf~~M~~~gv~p---d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
+.|....|..-+++|.+. ..- ....+-.|..+|-+-|..++|...-.-+..
T Consensus 179 kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777777665 211 223445555666666666666555444433
No 327
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.07 E-value=2.3e+02 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=17.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 94 SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 94 ~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
...+.|+.....+-+++|-+..|+..|..+|+-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555555555555555554
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.00 E-value=7.5e+02 Score=26.88 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHH
Q 010790 38 DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-------NNVIPNEASVTSVARL 110 (501)
Q Consensus 38 ~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~-------~g~~pd~~t~~~li~~ 110 (501)
+...|+..|+...+.|-.-..+....+ .... .+....+++.|+..|....+ .| +.....-+-.+
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~-y~~G-----~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~ 297 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGIC-YLAG-----TYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRL 297 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHH-Hhhc-----cccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHH
Confidence 367889999988887752211111111 1111 12233389999999999877 55 22345566666
Q ss_pred HHhCC-----CHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Q 010790 111 AASKN-----DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE-NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA- 183 (501)
Q Consensus 111 ~~~~g-----~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~-~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~- 183 (501)
|.+.. +.+.|+.++..- ...|. |+.-..-..+.-... ..|...|+++|..-...|..+ ..-+-+++-...
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~a-A~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKA-AELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGL 374 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHH-HhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCC
Confidence 66643 667799999888 67766 555444333333322 356789999999988887642 111111111111
Q ss_pred -hcCChHHHHHHHHHHHhCC
Q 010790 184 -ETGRVEKVYQYLQKLRSTV 202 (501)
Q Consensus 184 -~~g~~~~a~~ll~~M~~~~ 202 (501)
-..+.+.|..++.+-.+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 1236778888888887777
No 329
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=29.46 E-value=53 Score=26.57 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCCcHHHHHHHHhc-CceEEeccc
Q 010790 396 GSNDDWYWLYAAVKL-RCLLVTNDE 419 (501)
Q Consensus 396 ~~~DD~~~l~aa~~~-~~~~vsnD~ 419 (501)
.+.+|..++-+|... .+++||||.
T Consensus 83 ~~~~D~~il~~a~~~~~~~lvT~D~ 107 (111)
T smart00670 83 LLPNDALILATAKELGNVVLVTNDR 107 (111)
T ss_pred CCCChHHHHHHHHHCCCCEEEeCCc
Confidence 456899999999988 899999995
No 330
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.42 E-value=9.1e+02 Score=27.66 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc--------------CCCCChhhHHHHHHH
Q 010790 82 LRHGFRVFDQML-SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF--------------NVVPRLRTYDPALFC 146 (501)
Q Consensus 82 ~~~a~~lf~~M~-~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~--------------gi~P~~~ty~~lI~~ 146 (501)
.++..+.+..+. ..|+..+......+++. ..|++..|+.++++. ... |. ++...+..++.+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQA-ia~~~~~It~~~V~~~LG~-~d~~~i~~ll~a 255 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQA-IAYSANEVTETAVSGMLGA-LDQTYMVRLLDA 255 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHH-HHhccCCcCHHHHHHHhCC-CCHHHHHHHHHH
Confidence 445555555544 46777777776666554 479999999998875 322 22 233344455554
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC
Q 010790 147 FCENLEAEKAYEVEEHMGLMGLSL 170 (501)
Q Consensus 147 ~~~~g~~~~A~~lf~~M~~~gv~p 170 (501)
+ ..|+..+++.++++|...|+.+
T Consensus 256 L-~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 256 L-AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred H-HcCCHHHHHHHHHHHHHhCCCH
Confidence 4 5699999999999998888754
No 331
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=29.13 E-value=7.4e+02 Score=26.57 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCCh--hhHHHHHHHHHHcCC
Q 010790 79 DSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLE 152 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~lI~~~~~~g~ 152 (501)
.|+.++|.++|.+|.+.... -+....-.||.++-..+...++..++.+. .+... |+. .+|++.+--+-..+|
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY-dDi~l-pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY-DDISL-PKSATICYTAALLKARAVGD 346 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh-ccccC-CchHHHHHHHHHHHHHhhcc
Confidence 35899999999999865432 24557778999999999999999999998 55444 444 567776654433443
No 332
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=29.08 E-value=51 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHhcC-ceEEeccc
Q 010790 396 GSNDDWYWLYAAVKLR-CLLVTNDE 419 (501)
Q Consensus 396 ~~~DD~~~l~aa~~~~-~~~vsnD~ 419 (501)
+.+-|-+++-+|++.+ ++|.|||.
T Consensus 83 ~~~aDe~i~~~a~~~~~~iVaTnD~ 107 (136)
T COG1412 83 GRYADECLLEAALKHGRYIVATNDK 107 (136)
T ss_pred CCChHHHHHHHHHHcCCEEEEeCCH
Confidence 5666999999999997 89999994
No 333
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.74 E-value=7.9e+02 Score=27.69 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=58.7
Q ss_pred HHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHh
Q 010790 118 DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG---LS----------LEQQEIAALLKVSAE 184 (501)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g---v~----------pd~~t~~~Li~~~~~ 184 (501)
++....+.......|+.-+......++... .|++..|..+++.+...| +. ++......|++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 444455554435567666666665555543 689999999887765532 11 133445566666655
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH
Q 010790 185 TGRVEKVYQYLQKLRSTVRCVNEET 209 (501)
Q Consensus 185 ~g~~~~a~~ll~~M~~~~~~p~~~t 209 (501)
++...++.++++|...|..+....
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHH
Confidence 889999999999999988776544
No 334
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.71 E-value=79 Score=30.36 Aligned_cols=97 Identities=24% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCcCchhHHHHHHHHHHhcCCcceEEEecccccCCCCCCcc--hHHHHHHHHhcCeEEeCCCC---CCCcHHHHHHHHh
Q 010790 335 EGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS--HRNLVEEWNEKGVLYMTPHG---SNDDWYWLYAAVK 409 (501)
Q Consensus 335 ~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~---~~DD~~~l~aa~~ 409 (501)
.|.-+...|+.+|+.+++. +...++++|=-. ....+++ |...|..|++. |-+|-| ...+...-.+|+.
T Consensus 120 TG~stl~EI~~Av~~~~~~--~~~~l~llHC~s--~YP~~~e~~NL~~i~~L~~~---f~~~vG~SDHt~g~~~~~~Ava 192 (241)
T PF03102_consen 120 TGMSTLEEIERAVEVLREA--GNEDLVLLHCVS--SYPTPPEDVNLRVIPTLKER---FGVPVGYSDHTDGIEAPIAAVA 192 (241)
T ss_dssp -TT--HHHHHHHHHHHHHH--CT--EEEEEE-S--SSS--GGG--TTHHHHHHHH---STSEEEEEE-SSSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc--CCCCEEEEecCC--CCCCChHHcChHHHHHHHHh---cCCCEEeCCCCCCcHHHHHHHH
Confidence 3444788999999999777 568888886332 1111222 23345555543 445555 4447788889998
Q ss_pred cCceEE-------eccchhhhHhhhcCchhHHHhhhc
Q 010790 410 LRCLLV-------TNDEMRDHIFELLGSNFFLKWKER 439 (501)
Q Consensus 410 ~~~~~v-------snD~~Rdh~~~~~~~~~f~rW~~~ 439 (501)
.++.|| -|..--||.+ .++|..|.+|.+.
T Consensus 193 lGA~vIEKHfTldr~~~g~Dh~~-Sl~p~el~~lv~~ 228 (241)
T PF03102_consen 193 LGARVIEKHFTLDRNLKGPDHKF-SLEPDELKQLVRD 228 (241)
T ss_dssp TT-SEEEEEB-S-TTSCSTTGCC-CB-HHHHHHHHHH
T ss_pred cCCeEEEEEEECCCCCCCCChhh-cCCHHHHHHHHHH
Confidence 877665 2356789988 5789899888764
No 335
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=4.9e+02 Score=24.19 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhc--CCCCChhhHHHHHH-HHHHcCCHH--HH
Q 010790 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVPRLRTYDPALF-CFCENLEAE--KA 156 (501)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~--gi~P~~~ty~~lI~-~~~~~g~~~--~A 156 (501)
-++++++-.++. -++...-.....|++++|..-++++ .+. .++--...|..+.. +||.++.-+ +|
T Consensus 19 REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a-~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA 88 (204)
T COG2178 19 REEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKA-SEAVEKLKRLLAGFPELYFAGFVTTALQEYVEA 88 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHH
Confidence 455666666663 3455555667788899999888877 321 22234567777777 777777544 55
Q ss_pred HHHHHHHHHCCCCCCHH----HHHHHHHHHH--------------hcCChHHHHHHHHHHHh
Q 010790 157 YEVEEHMGLMGLSLEQQ----EIAALLKVSA--------------ETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 157 ~~lf~~M~~~gv~pd~~----t~~~Li~~~~--------------~~g~~~~a~~ll~~M~~ 200 (501)
..+|.-+...+ .|+.. ..-..|.|.+ +.|+++.|.++++-|..
T Consensus 89 ~~l~~~l~~~~-~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 89 TLLYSILKDGR-LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHhcCC-CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56666555443 33332 2333444443 35777777777777743
No 336
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.14 E-value=86 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 010790 176 AALLKVSAETGRVEKVYQYLQKLRS 200 (501)
Q Consensus 176 ~~Li~~~~~~g~~~~a~~ll~~M~~ 200 (501)
--+|.||.+.|++++|.+.+.++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777777777777777776644
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.73 E-value=3.6e+02 Score=23.28 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010790 119 YAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (501)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~ 166 (501)
+..+-++.+ -...+.|+.....+.|.++-+.+|+-.|.++|+.++.+
T Consensus 67 EvrkglN~l-~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNL-FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhh-hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445556666 56778899999999999999999999999999988765
No 338
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.68 E-value=5.8e+02 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHh
Q 010790 81 ALRHGFRVFDQMLSN---NVIPNEASV--TSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~---g~~pd~~t~--~~li~~~~~~g~~~~A~~l~~~M 127 (501)
+.++|++.++++.+. .-.|+.+.| +.+.+.+-..|+..++.+++++.
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455566666665542 233444443 34444455566666666666655
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=27.04 E-value=7.8e+02 Score=26.14 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHhCCC-C---CC-HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHH--HcC
Q 010790 79 DSALRHGFRVFDQMLSNNV-I---PN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC--ENL 151 (501)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~-~---pd-~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~--~~g 151 (501)
.+.+.+|..+|..+..+-- . .. ++.-+-+|++|.. .+.+.....+.+..+.. | ...|-++..+.. +.+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHHHhh
Confidence 3478889999988765311 1 12 4445677777764 56777777777773334 3 334555554432 678
Q ss_pred CHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 010790 152 EAEKAYEVEEHMGLM--GLSL------------EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC----VNEETGKII 213 (501)
Q Consensus 152 ~~~~A~~lf~~M~~~--gv~p------------d~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~----p~~~t~~~i 213 (501)
+.++|.+.+....++ +-.| |-.-=+..+..+...|.+.++..++++|...-.. .+..++..+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988877665 3222 2222344556677899999999999999775444 667777553
No 340
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.94 E-value=1.4e+02 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.108 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 010790 105 TSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M 127 (501)
..+|.-|...|+.++|..-+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666667777777666665
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=26.42 E-value=3.3e+02 Score=27.13 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 010790 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS-----TVRCVNEET 209 (501)
Q Consensus 139 ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~-----~~~~p~~~t 209 (501)
+.+-.-..|..+|.+.+|..+.+...... +.++..|-.|+..++..|+--.|..-+.+|.+ -|+..+.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45666677888999999988887765443 34777888899999998887777766666633 466666643
No 342
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=26.41 E-value=2.3e+02 Score=30.42 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=80.2
Q ss_pred CCCCCHhHHHHHHHHHHh-cC---CHHHHHHHHHH---HH------------hCCCCCCHHHHHHHHH---HHHhCCCCC
Q 010790 18 TNPNPETNFLINLQSCTK-SK---DLTTAISLYES---AH------------SQNLRLSLHHFNALLY---LCSDSATDP 75 (501)
Q Consensus 18 ~~~~p~~~~n~lI~~~~k-~g---~~~~A~~lf~~---m~------------~~gv~p~~~ty~~LL~---~c~~~~~~~ 75 (501)
....|...+...|..|-- +| ..+.|.+|-.. |+ +..++.+..-..++|. ..++..+..
T Consensus 546 ~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~ 625 (729)
T KOG0481|consen 546 EGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSP 625 (729)
T ss_pred CCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCc
Confidence 334455566666654432 22 34555554333 22 1235556666777765 566667788
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCH
Q 010790 76 SSKDSALRHGFRVFDQMLSNNVIPNEASV--TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (501)
Q Consensus 76 ~~k~~~~~~a~~lf~~M~~~g~~pd~~t~--~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~ 153 (501)
.+....+++|+++|.--- .|.++- .+.+.++..-.+.++..++=.++.+...+ -..++|..+|.-|.+.|.-
T Consensus 626 ~ate~hV~EA~RLF~vST-----mdAa~~g~l~g~egf~s~e~~e~i~rie~qlkrr~~I-G~~~se~~li~df~~~~y~ 699 (729)
T KOG0481|consen 626 FATEAHVEEALRLFQVST-----MDAASQGTLAGVEGFTSPEDQEEIKRIEKQLKRRFAI-GSQVSEHSLIRDFVRQGYS 699 (729)
T ss_pred cccHHHHHHHHHHHhHhh-----HHHHhcCchhcccccCCHHHHHHHHHHHHHHHHhccc-ccchhHHHHHHHHHhcccc
Confidence 888888999999987421 111111 12233333333445555555666222333 4667888888888888776
Q ss_pred HHHH-HHHHHHHHC
Q 010790 154 EKAY-EVEEHMGLM 166 (501)
Q Consensus 154 ~~A~-~lf~~M~~~ 166 (501)
+.|. +++.-|..+
T Consensus 700 e~~v~kal~~m~~r 713 (729)
T KOG0481|consen 700 EHAVKKALQIMLRR 713 (729)
T ss_pred HHHHHHHHHHHHhh
Confidence 6654 455556554
No 343
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=26.24 E-value=3.3e+02 Score=27.20 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCccEE-EeCcc------ccc-cccccCCCCcCchhHHHHHHHHHHhcCCcceEEEecccccCCCCCCcc
Q 010790 305 SEFQDWLEKNANYEAI-VDGAN------IGL-YQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS 376 (501)
Q Consensus 305 ~~F~~~l~~~~~~D~v-~Dg~N------v~~-~~~~~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 376 (501)
+.-+++.+.+.|.|+| +|.-- .++ +-.+|.-..-.|+....+|+.|.++ |.+++++++-. +...
T Consensus 27 ~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~--G~~~~~~i~P~-v~~~----- 98 (317)
T cd06594 27 EALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKAR--GIRVLTYINPY-LADD----- 98 (317)
T ss_pred HHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHC--CCEEEEEecCc-eecC-----
Confidence 4445555678999988 77321 111 0012222223567899999999998 67777766533 2111
Q ss_pred hHHHHHHHHhcCeEEeCCCC
Q 010790 377 HRNLVEEWNEKGVLYMTPHG 396 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~t~~~ 396 (501)
.....++..+++.++-.+++
T Consensus 99 ~~~~y~~~~~~g~~vk~~~g 118 (317)
T cd06594 99 GPLYYEEAKDAGYLVKDADG 118 (317)
T ss_pred CchhHHHHHHCCeEEECCCC
Confidence 11224677778877776655
No 344
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=26.07 E-value=19 Score=33.81 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=29.6
Q ss_pred CccEEEeCccccccccc-cCCCCcCchhHHHHHHHHHHhcCCcceEEE
Q 010790 316 NYEAIVDGANIGLYQQN-FTEGGFSVPQLDAVVKKLYERSGNKWPLVI 362 (501)
Q Consensus 316 ~~D~v~Dg~Nv~~~~~~-~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~ 362 (501)
-||++|+|.+++-..++ |. ..+.-.+++.+++.|+++ ...|+.+
T Consensus 163 VyDV~ieGVSLv~~yR~qF~-~~i~~~gid~Li~~L~~~--~~~~~~~ 207 (211)
T PRK15117 163 AYDMIAEGVSMITTKQNEWA-DLLRTKGIDGLTAQLKSI--AQQPITL 207 (211)
T ss_pred EEEEEEeeeeHHHHHHHHHH-HHHHhCCHHHHHHHHHHh--ccCCccC
Confidence 48999999999754332 21 112234799999999988 5666653
No 345
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.82 E-value=1.1e+02 Score=22.84 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 010790 55 RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (501)
Q Consensus 55 ~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~ 114 (501)
.|....++.|+.+++... .+++++..+++....|. .+.-+|---++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~--------AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDH--------AIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 455567788888877776 78889999988888876 4666777777766653
No 346
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=25.78 E-value=7.8e+02 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010790 102 ASVTSVARLAASKNDGDYAFVLIKRM 127 (501)
Q Consensus 102 ~t~~~li~~~~~~g~~~~A~~l~~~M 127 (501)
..+.+.+...|..|+|+.|+++++.-
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34555666666666666666666654
No 347
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=25.50 E-value=8.3e+02 Score=25.94 Aligned_cols=174 Identities=9% Similarity=-0.045 Sum_probs=97.8
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC---C-HHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 010790 35 KSKDLTTAISLYESAHSQNL-RL---S-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-NNVIPNEASVTSVA 108 (501)
Q Consensus 35 k~g~~~~A~~lf~~m~~~gv-~p---~-~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~-~g~~pd~~t~~~li 108 (501)
+.+++.+|.++|.+.-++-- .| . .+--+-+|+++-... ++.......+..+ .|-.+-...|-+|.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n---------ld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN---------LDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh---------HHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 56788888888887764421 11 1 334556677776664 5554445555444 33333232332222
Q ss_pred HHHHhCCCHHHHHHHHHHhHhhc--CCCC------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CC
Q 010790 109 RLAASKNDGDYAFVLIKRMNNEF--NVVP------------RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL----SL 170 (501)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~--gi~P------------~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv----~p 170 (501)
+.+.+..+.|.+.+..- ... +-.| |-.-=+..+.++...|.+.+++.+++.|..+=+ .-
T Consensus 89 --~Y~~k~~~kal~~ls~w-~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 89 --AYKQKEYRKALQALSVW-KEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred --HHHhhhHHHHHHHHHHH-HhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 34577788888877765 333 2222 112224556667788888888888888765533 35
Q ss_pred CHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHh------CCCCCCHHHHHHHHHHhccC
Q 010790 171 EQQEIAALLKVSAETGR---------------VEKVYQYLQKLRS------TVRCVNEETGKIIEDWFSGQ 220 (501)
Q Consensus 171 d~~t~~~Li~~~~~~g~---------------~~~a~~ll~~M~~------~~~~p~~~t~~~i~~~f~~~ 220 (501)
+..+||.++-.+.++-. .+-++-...+|.. ..+.|.++.+..|.......
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 77788875555444321 2333444455543 24567777777766665443
No 348
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.12 E-value=5.3e+02 Score=24.59 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=42.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 143 ALFCFCENLEAEKAYEVEEHMGLM----G-LSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 143 lI~~~~~~g~~~~A~~lf~~M~~~----g-v~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
|-..|.+.|+.++|.++|+.+... | ..+...+...|..++.+.|+.+..+.+.-+|.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345688999999999999988421 2 23455667777788888899888887766654
No 349
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.96 E-value=9.7e+02 Score=26.54 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=52.3
Q ss_pred hhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010790 129 NEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG---L----------SLEQQEIAALLKVSAETGRVEKVYQYL 195 (501)
Q Consensus 129 ~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~g---v----------~pd~~t~~~Li~~~~~~g~~~~a~~ll 195 (501)
.+.|+..+......++.. -.|++..|..+++.....| + .++......|++++.. |+...++.++
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 445665555555555442 3578888887776554332 1 1234455566666655 7889999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHh
Q 010790 196 QKLRSTVRCVNEETGKIIEDWF 217 (501)
Q Consensus 196 ~~M~~~~~~p~~~t~~~i~~~f 217 (501)
++|...|..|.... ..++.++
T Consensus 274 ~~l~~~G~~~~~il-~~l~~~~ 294 (618)
T PRK14951 274 DELRLNGLSAASTL-EEMAAVL 294 (618)
T ss_pred HHHHHcCCCHHHHH-HHHHHHH
Confidence 99999887765433 4444444
No 350
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.86 E-value=9.1e+02 Score=26.16 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCC
Q 010790 56 LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (501)
Q Consensus 56 p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (501)
+....|+.|+.++.... .++-.+++.++.. .+ ...+..++.+.+..|-......+.+.+ +...+.+
T Consensus 308 ~~~~~f~~lv~~lR~~~---------~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i-~~~~~~~ 373 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS---------EEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWI-KNKKITP 373 (574)
T ss_pred chHHHHHHHHHHHHhCC---------HHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH-HcCCCCH
Confidence 45678999999888775 7888888888854 11 678999999999999999888888888 6666633
Q ss_pred ChhhHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 010790 136 RLRTYDPALFC--FCENLEAEKAYEVEEHMGLMGLSLEQ-------QEIAALLKVSAETG 186 (501)
Q Consensus 136 ~~~ty~~lI~~--~~~~g~~~~A~~lf~~M~~~gv~pd~-------~t~~~Li~~~~~~g 186 (501)
...-..++.. ..+.=..+-...+++-+....+.+.. .+|.+|+.-+|...
T Consensus 374 -~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 374 -LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred -HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 3323333332 22334445555555544444555554 45666666555443
No 351
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.68 E-value=7.1e+02 Score=24.85 Aligned_cols=128 Identities=11% Similarity=-0.045 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHH
Q 010790 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (501)
Q Consensus 24 ~~~n~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t 103 (501)
..++..|..+++...-. .+|.+.|.+.|+. .+....+++.+.+.|+.-|..-
T Consensus 163 ~lk~kAL~lLSrReRSe--~ELr~KL~kkG~~--------------------------ee~IE~VIerLke~gYLDDeRF 214 (309)
T PRK14136 163 SLKGRALGYLSRREYSR--AELARKLAPYADE--------------------------SDSVEPLLDALEREGWLSDARF 214 (309)
T ss_pred HHHHHHHHHhhcccccH--HHHHHHHHHcCCC--------------------------HHHHHHHHHHHHHcCCcCHHHH
Confidence 46777777777654433 4566666666652 2334556666666666555444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~ 183 (501)
-..+++.. .+. ..-..|-.++ .+.||.++ .....|..+ ...+++.|..+++.-.. .+..+.....-++..+.
T Consensus 215 AesyVr~R--~~k-kGp~rIrqEL-rQKGId~e--LIEqALeei-eEDE~E~A~~L~eKK~~-~~~~d~kek~K~iRfL~ 286 (309)
T PRK14136 215 AESLVHRR--ASR-VGSARIVSEL-KRHAVGDA--LVESVGAQL-RETEFERAQAVWRKKFG-ALPQTPAERAKQARFLA 286 (309)
T ss_pred HHHHHHHH--hhc-hhHHHHHHHH-HHcCCCHH--HHHHHHHhc-cHhHHHHHHHHHHHHhc-ccCcCHHHHHHHHHHHH
Confidence 44444432 222 2334566677 78888433 333344433 22345555555544321 22223333444555555
Q ss_pred hcCC
Q 010790 184 ETGR 187 (501)
Q Consensus 184 ~~g~ 187 (501)
..|.
T Consensus 287 rRGF 290 (309)
T PRK14136 287 ARGF 290 (309)
T ss_pred HCCC
Confidence 5553
No 352
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.65 E-value=2.9e+02 Score=26.43 Aligned_cols=61 Identities=13% Similarity=-0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhHhh---cC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010790 104 VTSVARLAASKNDGDYAFVLIKRMNNE---FN-VVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (501)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~l~~~M~~~---~g-i~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~ 164 (501)
.--|..-|.+.|++++|..+|+.+... .| ..+...+...++.++.+.|+.+....+--+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345777899999999999999988321 22 22344566677888888999988877665554
No 353
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.58 E-value=2.9e+02 Score=22.39 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010790 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG--RVEKVYQYLQKLRSTVRCVNEETGKIIEDW 216 (501)
Q Consensus 141 ~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g--~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~ 216 (501)
..+|..|...||.++|..-+.++..... -......+|..+...+ .-+.+..++..+...+..+.......+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~ 81 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDL 81 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4566677777888888877777532211 1122333333333332 234455666666666655555444443333
No 354
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.39 E-value=3.7e+02 Score=21.46 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 010790 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 85 a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~ 158 (501)
+.++++.+.+.|+- +..-...+-.+--..|+-+.|.++++.+ . .| | ..|...++++-..|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L-~-rg--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRI-V-QK--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHh-c-cC--C--cHHHHHHHHHHHcCchhhhhc
Confidence 66778888777743 2223333333333567888888888888 4 32 3 367788888877777665543
No 355
>PRK15331 chaperone protein SicA; Provisional
Probab=24.35 E-value=5.3e+02 Score=23.23 Aligned_cols=83 Identities=16% Similarity=-0.029 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf 160 (501)
++++|..+|.-+...+.. |.--|..|-..|-..++.++|...|... -.... -|.+.+=.+=.+|...|+.+.|...|
T Consensus 52 k~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVA-FTLLK-NDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccc-CCCCccchHHHHHHHhCCHHHHHHHH
Confidence 699999999998764332 3334567777777799999999999877 44332 34455555667888999999999999
Q ss_pred HHHHHC
Q 010790 161 EHMGLM 166 (501)
Q Consensus 161 ~~M~~~ 166 (501)
+....+
T Consensus 129 ~~a~~~ 134 (165)
T PRK15331 129 ELVNER 134 (165)
T ss_pred HHHHhC
Confidence 888763
No 356
>COG5210 GTPase-activating protein [General function prediction only]
Probab=24.18 E-value=5.6e+02 Score=27.36 Aligned_cols=154 Identities=8% Similarity=-0.069 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010790 39 LTTAISLYESAHSQNLRLSLHHF-----NALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (501)
Q Consensus 39 ~~~A~~lf~~m~~~gv~p~~~ty-----~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~ 113 (501)
-+.|+..+..+.+....|..++- ...+..... - --+.--+++..|.+.|+.+...++..++..++.
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~-~--------v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~ 389 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD-L--------VEELDPELYEHLLREGVVLLMFAFRWFLTLFVR 389 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH-H--------HHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHh
Confidence 67888888887763222332221 111111111 0 122356799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010790 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189 (501)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~----~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~ 189 (501)
.-.++.|..+++.+ --.|+.--...+-+++..... ...-..-..++...... +....| .-..-.+.+...
T Consensus 390 ~~p~e~~lriwD~l-f~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~ 463 (496)
T COG5210 390 EFPLEYALRIWDCL-FLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFLH---SGKEAW--SSILKFRHGTDR 463 (496)
T ss_pred cCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhhhhh---hhhhhh--hhhHHhhhhhhh
Confidence 99999999999998 666664333444433333211 11111222233222211 111122 222233344555
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 010790 190 KVYQYLQKLRSTVRCVNE 207 (501)
Q Consensus 190 ~a~~ll~~M~~~~~~p~~ 207 (501)
+.......+.+..+.|+.
T Consensus 464 ~~~~~i~~~~~~~i~p~~ 481 (496)
T COG5210 464 DILLFIEDLLKKDITPTR 481 (496)
T ss_pred hHHHHHHhhhhcccCchh
Confidence 666666777778888876
No 357
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.15 E-value=1.1e+03 Score=27.24 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~ 218 (501)
....||++.. .++...++.++++|...|..|.. ....|+.+|.
T Consensus 250 ~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~~-~L~~LL~~fR 292 (824)
T PRK07764 250 LIDEAVDALA-AGDGAALFGTVDRVIEAGHDPRR-FAEDLLERLR 292 (824)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH
Confidence 3445555554 46677888888888877765433 3345555553
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.95 E-value=4.1e+02 Score=29.45 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHH------HHhCCCCCCHHHHHHHHH--HH-HhCCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q 010790 30 LQSCTKSKDLTTAISLYES------AHSQNLRLSLHHFNALLY--LC-SDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (501)
Q Consensus 30 I~~~~k~g~~~~A~~lf~~------m~~~gv~p~~~ty~~LL~--~c-~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd 100 (501)
-.++..+|+..+|..+.-+ +.+-+-+.|..--.+|.. .+ .+.. .+.-|-++|..|- |
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~--------~~gLAaeIF~k~g------D 775 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLD--------SPGLAAEIFLKMG------D 775 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcc--------ccchHHHHHHHhc------c
Confidence 3455666777777665421 122222333333333332 22 2222 3555788888873 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChh-----------hHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010790 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR-----------TYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (501)
Q Consensus 101 ~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-----------ty~~lI~~~~~~g~~~~A~~lf~~M~~~g 167 (501)
..+++......++|.+|+.+-+.. .+ +.||+. -|.-.-.+|-++|.-.+|..+++.+....
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~h-Pe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKH-PE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhC-cc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 246889999999999999999887 43 335542 23344567889999999999999886653
No 359
>PHA02874 ankyrin repeat protein; Provisional
Probab=23.40 E-value=3.5e+02 Score=28.09 Aligned_cols=56 Identities=7% Similarity=-0.007 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 010790 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ--EIAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (501)
Q Consensus 142 ~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~--t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p 205 (501)
+.+...++.|+.+-+..++ +.|..++.. .-.+.|...+..|..+ +++.+.+.|..+
T Consensus 126 T~Lh~A~~~~~~~~v~~Ll----~~gad~n~~d~~g~tpLh~A~~~~~~~----iv~~Ll~~g~~~ 183 (434)
T PHA02874 126 TFLHYAIKKGDLESIKMLF----EYGADVNIEDDNGCYPIHIAIKHNFFD----IIKLLLEKGAYA 183 (434)
T ss_pred cHHHHHHHCCCHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHHCCcHH----HHHHHHHCCCCC
Confidence 4455556778776655444 445443321 1122333445566543 444444555444
No 360
>PF12813 XPG_I_2: XPG domain containing
Probab=23.31 E-value=1.1e+02 Score=29.47 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=28.9
Q ss_pred HHHHHHHhc---C-eEEeCCCCCCCcHHHHHHHHhcCceEEeccchhhh
Q 010790 379 NLVEEWNEK---G-VLYMTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDH 423 (501)
Q Consensus 379 ~~~~~~~~~---~-~~~~t~~~~~DD~~~l~aa~~~~~~~vsnD~~Rdh 423 (501)
.+++.|++. + .+..|| .+.|.|.-..|-+.+|.|+|||- |.
T Consensus 8 ~~~e~L~~~~~~~~~~~~~~--~EAD~~~A~~A~~~~~~VLt~DS--Df 52 (246)
T PF12813_consen 8 AFIEALRESWRYGVPVVQCP--GEADRECAALARKWGCPVLTNDS--DF 52 (246)
T ss_pred HHHHHHHHHhhcCCcEEEcC--ccchHHHHHHHHHcCCeEEccCC--CE
Confidence 344555554 4 445555 47888888888888999999994 65
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.30 E-value=1.2e+02 Score=22.16 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010790 138 RTYDPALFCFCENLEAEKAYEVEEHMGL 165 (501)
Q Consensus 138 ~ty~~lI~~~~~~g~~~~A~~lf~~M~~ 165 (501)
..--.+|.||...|+.++|.+..+++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334567777777777777777666643
No 362
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=23.10 E-value=3.2e+02 Score=27.79 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChh
Q 010790 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (501)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (501)
+-+|.-+++...... +-|-..--.+|+.|...|-...|..+|..+ .-..++-|..
T Consensus 199 l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L-~iK~IQ~DTL 253 (365)
T PF09797_consen 199 LLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESL-DIKNIQLDTL 253 (365)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhc-ChHHHHHHHh
Confidence 445555666544431 234444445666777777777777777766 5444544433
No 363
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=23.02 E-value=5.1e+02 Score=22.63 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHH---HHHHHcCCHHHHH
Q 010790 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL---FCFCENLEAEKAY 157 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI---~~~~~~g~~~~A~ 157 (501)
+++.|++.|.+-... .+-+...||.-..++--.|+.++|++=+++.+.-.|=+... ...+.+ .-|-..|+-+.|+
T Consensus 58 ~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt-acqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 58 DLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT-ACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred chHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHHHhCchHHHH
Confidence 899999999987664 23367789999999999999999998888773334432111 111111 1244678888888
Q ss_pred HHHHHHHHCC
Q 010790 158 EVEEHMGLMG 167 (501)
Q Consensus 158 ~lf~~M~~~g 167 (501)
.=|+.....|
T Consensus 136 ~DFe~AA~LG 145 (175)
T KOG4555|consen 136 ADFEAAAQLG 145 (175)
T ss_pred HhHHHHHHhC
Confidence 8777765544
No 364
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=22.95 E-value=1.8e+02 Score=17.44 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010790 174 EIAALLKVSAETGRVEKVYQYLQKLR 199 (501)
Q Consensus 174 t~~~Li~~~~~~g~~~~a~~ll~~M~ 199 (501)
+|..+-..|.+.|+.++|...|++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666777777777666543
No 365
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.57 E-value=4e+02 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010790 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (501)
Q Consensus 158 ~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~ 201 (501)
++|+--...|+..|...|-.+++.+.-+--++....+++.|-..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 77887788888888888888888777776777777777777543
No 366
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.46 E-value=1.1e+03 Score=26.18 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=56.0
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCC---C----------CChhhHHHHHHHHH
Q 010790 83 RHGFRVFDQ-MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV---V----------PRLRTYDPALFCFC 148 (501)
Q Consensus 83 ~~a~~lf~~-M~~~g~~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi---~----------P~~~ty~~lI~~~~ 148 (501)
++..+.+.. +...|+..+......+++ ...|++..|+.++++. ...+- . ++....-.++++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~-ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL- 261 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQA-IAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL- 261 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHH-HHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-
Confidence 333444433 455788888877777776 3569999999998875 33321 0 2223334455554
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC
Q 010790 149 ENLEAEKAYEVEEHMGLMGLSLE 171 (501)
Q Consensus 149 ~~g~~~~A~~lf~~M~~~gv~pd 171 (501)
..|+...++.++++|...|..|.
T Consensus 262 ~~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 262 AQGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45899999999999998887653
No 367
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=22.42 E-value=6.8e+02 Score=23.82 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CCCCCC-ChhhHHHHHHHHHHHHhC
Q 010790 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDS-----------ATDPSS-KDSALRHGFRVFDQMLSN 95 (501)
Q Consensus 28 ~lI~~~~k~g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~-----------~~~~~~-k~~~~~~a~~lf~~M~~~ 95 (501)
.+..+|-+.++.++|...|++..+.--.-...-|...+.+.+.. .++... ......+|+..|+.+.+.
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999988654222223454444433310 011111 112345677888887765
Q ss_pred CCC----CCHHHHH------------HHHHHHHhCCCHHHHHHHHHHhHhhc-CCCCChhhHHHHHHHHHHcCCHHHHHH
Q 010790 96 NVI----PNEASVT------------SVARLAASKNDGDYAFVLIKRMNNEF-NVVPRLRTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 96 g~~----pd~~t~~------------~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P~~~ty~~lI~~~~~~g~~~~A~~ 158 (501)
... ++....- .+.+.|-+.|.+..|..-|+.+.... +.+......-.++.+|.+.|..+.|..
T Consensus 154 yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 322 2222211 24456888999999999999984443 222233455678899999999999988
Q ss_pred HHHHHH
Q 010790 159 VEEHMG 164 (501)
Q Consensus 159 lf~~M~ 164 (501)
+..-+.
T Consensus 234 ~~~~l~ 239 (243)
T PRK10866 234 VAKIIA 239 (243)
T ss_pred HHHHHh
Confidence 766543
No 368
>PRK11906 transcriptional regulator; Provisional
Probab=22.40 E-value=9.4e+02 Score=25.47 Aligned_cols=111 Identities=11% Similarity=0.008 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCC
Q 010790 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA-SVTSVARLAASKN 115 (501)
Q Consensus 37 g~~~~A~~lf~~m~~~gv~p~~~ty~~LL~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~~pd~~-t~~~li~~~~~~g 115 (501)
.+..+|.++-+...+.+- -|++.-..+=.+....+ .++.|..+|++-.. ..||.. +|-..--.+.-+|
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG--------QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcC
Confidence 345566666666665442 24444333323333334 68889999998766 345532 3333333345589
Q ss_pred CHHHHHHHHHHhHhhcCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHH
Q 010790 116 DGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEH 162 (501)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~---~ty~~lI~~~~~~g~~~~A~~lf~~ 162 (501)
+.++|.+.+++-.+- .|.. ....-.|+.|+.++ ++.|..+|-.
T Consensus 387 ~~~~a~~~i~~alrL---sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 387 KIEEARICIDKSLQL---EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred CHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 999999999984133 3544 34445566887665 6777777644
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=22.10 E-value=4.1e+02 Score=21.19 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=39.0
Q ss_pred HHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010790 120 AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (501)
Q Consensus 120 A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~ 192 (501)
+.++++.+ ...|+ -+....+.+-.+--..|..+.|.++...+. +|-. -|..+++++-+.|..+-|.
T Consensus 21 ~~~v~d~l-l~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKC-LEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHH-HhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 34455555 44443 222222333332235678888888888887 5432 6788888888877765553
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.02 E-value=1.8e+02 Score=16.93 Aligned_cols=28 Identities=11% Similarity=-0.184 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010790 151 LEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (501)
Q Consensus 151 g~~~~A~~lf~~M~~~gv~pd~~t~~~Li 179 (501)
|+.+.|..+|+.+....- -+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 456666677766665421 2444555444
No 371
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=21.99 E-value=2.1e+02 Score=25.61 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=49.7
Q ss_pred CcceEEEecccccCCCCCCcchHHHHHHHHhcCeEEeCCCCCCCcHHHHHHHHhc------CceEEeccchhhhHhhhcC
Q 010790 356 NKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKL------RCLLVTNDEMRDHIFELLG 429 (501)
Q Consensus 356 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~DD~~~l~aa~~~------~~~~vsnD~~Rdh~~~~~~ 429 (501)
|.++.||-.-.++.+.. +++.. -.-.+++|.-+-..|-|+--.+.+. ...|+|.|.--.|..-..|
T Consensus 48 g~~iivVFDA~~v~g~~-----~~~~~---~~vsvvyT~~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~EQ~~Ifg~G 119 (173)
T COG3688 48 GYKIIVVFDAHYVPGVG-----REYKN---HRVSVVYTKEGETADSFIERYVAELRNAATHQVIVATSDRAEQWTIFGQG 119 (173)
T ss_pred CceEEEEEEcccccccc-----ccccc---cceEEEEecCCccHHHHHHHHHHHHhccccceEEEEeCchhhhhhhhccc
Confidence 67888877665555522 11111 1257899999999999998776653 5689999999888432333
Q ss_pred c---hhHHHhhhccEE
Q 010790 430 S---NFFLKWKERHQV 442 (501)
Q Consensus 430 ~---~~f~rW~~~hq~ 442 (501)
. ..-.=|++-+++
T Consensus 120 A~r~Sarel~~ev~~~ 135 (173)
T COG3688 120 ALRMSARELYQEVETI 135 (173)
T ss_pred hHHHhHHHHHHHHHHH
Confidence 2 133334554443
No 372
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=21.85 E-value=6.1e+02 Score=24.11 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHhcCeEEeCCCC-CCCcHHHHHHHH--h--cCceEEeccc
Q 010790 382 EEWNEKGVLYMTPHG-SNDDWYWLYAAV--K--LRCLLVTNDE 419 (501)
Q Consensus 382 ~~~~~~~~~~~t~~~-~~DD~~~l~aa~--~--~~~~~vsnD~ 419 (501)
+.|...+.-++..++ -.||..--+|.- . .+++|||.|.
T Consensus 92 ~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S~Dk 134 (240)
T cd00008 92 ELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVSGDK 134 (240)
T ss_pred HHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 334445555665555 555553333321 1 2578999985
No 373
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=21.53 E-value=8.8e+02 Score=24.81 Aligned_cols=237 Identities=13% Similarity=0.079 Sum_probs=129.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC----C--------CCHHHHHHH--HHHHHhCCCCCCCChhhHHHHHHHHHHHHhCCC
Q 010790 32 SCTKSKDLTTAISLYESAHSQNL----R--------LSLHHFNAL--LYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (501)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~gv----~--------p~~~ty~~L--L~~c~~~~~~~~~k~~~~~~a~~lf~~M~~~g~ 97 (501)
.+.|.|.+++|..=|+...+..- . +-...++.. |.....+| +...|+++..++.+- .
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi-~ 185 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEI-Q 185 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhc-C
Confidence 36688999999999999875532 1 111122211 12222233 677888888888774 3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010790 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (501)
Q Consensus 98 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~ 177 (501)
+.|...|-.-..+|...|++..|..=+... .+..- -+..+.--+-.-+-..||.+.++....+... +.||....-.
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a-skLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQA-SKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHH-Hhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 458888888899999999999998777666 33221 2444555555667788999998888777664 3565543221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCcCCCcccchhhHHHHHHhcCCcccCCccccCCceEEE
Q 010790 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVK 257 (501)
Q Consensus 178 Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~~~~~~~~~~~~~~v~~~~~~~g~~~~g~g~~~~~~w~v~ 257 (501)
. |-+ +.+....+..|..... ..-+..-++... .+.++..+...+ ...+.
T Consensus 262 ~---YKk---lkKv~K~les~e~~ie---~~~~t~cle~ge----------------~vlk~ep~~~~i------r~~~~ 310 (504)
T KOG0624|consen 262 F---YKK---LKKVVKSLESAEQAIE---EKHWTECLEAGE----------------KVLKNEPEETMI------RYNGF 310 (504)
T ss_pred H---HHH---HHHHHHHHHHHHHHHh---hhhHHHHHHHHH----------------HHHhcCCcccce------eeeee
Confidence 1 111 2333333333322210 000111011110 111111100000 00000
Q ss_pred EeeecCCCCCCCCCCccc----ccCCCHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHH
Q 010790 258 RGSVDESGKCCSCGDQLA----CVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLE 312 (501)
Q Consensus 258 ~~~v~~~gkCg~~~~al~----~~~l~~~e~~~~~~~i~~~a~~g~~~~~l~~F~~~l~ 312 (501)
..+-.-+..-+..+++++ +.++++.+...+...-.++....+..+++..|+.-++
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 000001111122333433 4678888999999888888888888899999998776
No 374
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=1.2e+02 Score=28.02 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=43.2
Q ss_pred CccEEEeCcccccccc----c-------------------cCCCCcCchhHHHHHHHHHHhcCCcceEEEecccccCCCC
Q 010790 316 NYEAIVDGANIGLYQQ----N-------------------FTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLW 372 (501)
Q Consensus 316 ~~D~v~Dg~Nv~~~~~----~-------------------~~~~~~~~~~i~~vv~~~~~~~~~~~~l~~l~~~~~~~~~ 372 (501)
.-|++|||-||...-. + +..+.-.-+.|+.+++++.+- +-+.+++|--+-..+..
T Consensus 66 g~~l~iDGyNvLItleSl~~g~~vlcdDg~iRDl~~~~gkyk~~E~t~~Al~lil~~lk~~--~~k~vi~L~d~~vs~SG 143 (211)
T COG2454 66 GQDLVIDGYNVLITLESLLKGEAVLCDDGVIRDLRGVQGKYKINEKTDKALDLLLEFLKDV--EPKSVIFLFDAPVSKSG 143 (211)
T ss_pred cceEEEechhhhhhHHHHhcCcEEEecCchhhhhhhhccchhhhhHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCccH
Confidence 4589999999975421 0 111112234677888888876 34556666333321110
Q ss_pred C-CcchHHHHHHHHhcCeEEeCCCC
Q 010790 373 E-NPSHRNLVEEWNEKGVLYMTPHG 396 (501)
Q Consensus 373 ~-~~~~~~~~~~~~~~~~~~~t~~~ 396 (501)
. ..--++.|+.+.-.+..+.+++-
T Consensus 144 el~~~i~~~mK~~~I~g~~~lvk~~ 168 (211)
T COG2454 144 ELAGRIEEKMKSLGIPGEASLVKNA 168 (211)
T ss_pred HHHHHHHHHHHhcCCCceeEeccCc
Confidence 0 01113456667777888888743
No 375
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.12 E-value=3.1e+02 Score=21.58 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010790 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (501)
Q Consensus 177 ~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~ 215 (501)
++|+.+.++.-.++|+++++.|.+.| ..++..+..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~~ 73 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALRV 73 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHh
No 376
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.10 E-value=4.9e+02 Score=27.47 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 010790 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (501)
Q Consensus 141 ~~lI~~~~~~g~~~~A~~lf~~M~~~gv~pd~~t~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p 205 (501)
..|+.-|.-.|++.+|.....++- ..+--.++.+-+++.+.-+.|+....+.++++.-..|..-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT 576 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT 576 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee
Confidence 456677777777777777766652 1222355677777777777777777777777766665443
No 377
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.06 E-value=90 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHH
Q 010790 37 KDLTTAISLYESAHSQN-LRLSLH 59 (501)
Q Consensus 37 g~~~~A~~lf~~m~~~g-v~p~~~ 59 (501)
=|++.|+..|.++...| |+|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 48999999999999876 666543
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.93 E-value=5.9e+02 Score=23.53 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCH--HH-----HHHHHHHHHhCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCC
Q 010790 81 ALRHGFRVFDQMLSNNVIPNE--AS-----VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (501)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~--~t-----~~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~ 152 (501)
.++-|+.+++.+.+.--.|+. .. --..+-.|.+.|.+++|.++++.. -. .|+....-.-|....+..|
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~-~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL-FS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-hc---CCCchhHHHHHHHHHHccc
Confidence 578889999888775444421 11 123344677788888888888777 33 2555555555554444443
No 379
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=1.1e+03 Score=25.47 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=20.2
Q ss_pred hCCCHHHHHHHHHHhHhhcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 010790 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (501)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~lI~~~~~~g~~~~A~~ 158 (501)
+.|++..|...|.++ .+.. +-|.+.|+.--.+|.+.|.+..|..
T Consensus 370 k~gdy~~Av~~YteA-Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEA-IKRD-PEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred hccCHHHHHHHHHHH-HhcC-CchhHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555554 2222 2233445555555555555444443
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.23 E-value=6.5e+02 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 010790 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (501)
Q Consensus 175 ~~~Li~~~~~~g~~~~a~~ll~~M~~~~~~p~~~t~~~i~~~f~ 218 (501)
++-.-+.|..+|.+.+|.++.++...- -+.++.....++..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la 324 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLA 324 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHH
Confidence 344445566666666666666554322 1334444444444443
Done!