Query 010791
Match_columns 501
No_of_seqs 179 out of 538
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 22.1 13 0.00046 24.8 -0.7 28 92-119 4-31 (31)
2 4ev6_A Magnesium transport pro 14.6 2.5E+02 0.0085 27.6 6.3 51 350-402 276-330 (339)
3 2xut_A Proton/peptide symporte 12.8 7.4E+02 0.025 24.5 9.4 46 321-370 56-101 (524)
4 2iub_A CORA, divalent cation t 11.7 2.5E+02 0.0087 27.9 5.4 46 350-397 300-349 (363)
5 2jo1_A Phospholemman; FXYD1, N 11.3 1E+02 0.0034 24.4 1.7 28 94-121 12-39 (72)
6 1v54_C Cytochrome C oxidase po 9.2 8.8E+02 0.03 23.1 8.1 72 318-391 124-201 (261)
7 2jp3_A FXYD domain-containing 9.0 1.1E+02 0.0039 23.8 1.2 28 94-121 13-40 (67)
8 1pw4_A Glycerol-3-phosphate tr 8.7 1.1E+03 0.037 22.4 8.7 45 321-370 64-108 (451)
9 1p58_A Major envelope protein 7.2 6.4E+02 0.022 26.8 6.3 65 321-400 426-490 (495)
10 1qle_C Cytochrome C oxidase po 7.1 1.4E+03 0.049 21.7 12.0 74 317-392 134-214 (273)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=22.14 E-value=13 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=23.3
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHH
Q 010791 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (501)
Q Consensus 92 HA~WnG~T~aDLVFP~FLFivGvSiplS 119 (501)
|-+|+.+....++|-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567888888899999999999988764
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.60 E-value=2.5e+02 Score=27.65 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCC----CCCccccCCchhHHHHHhHHHHHHHHHH
Q 010791 350 SARLKHWVSMGFGLLIIAIILHFTN----AIPINKQLYSFSYVCFTAGAAGIVFSAL 402 (501)
Q Consensus 350 ~~~~~~l~~~G~~llilGlll~~~~----~~PinK~LWT~Sfvl~TsG~a~l~La~~ 402 (501)
.+.++.+.+++++++.+.++-++-| .+|--+ |...|..+.+..+.+.++..
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~gy~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN--NPQGFWLVMALMVVIIMIFV 330 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS--CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc--CchHHHHHHHHHHHHHHHHH
Confidence 3455667778887766666554321 255444 55667666555554444433
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=12.81 E-value=7.4e+02 Score=24.55 Aligned_cols=46 Identities=9% Similarity=-0.131 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Q 010791 321 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 370 (501)
Q Consensus 321 EGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~l~~~G~~llilGlll 370 (501)
.|++.++..+...+.....|.+..+..+. ++.+..+.++..++.++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~----r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGK----YNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCS----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHH
Confidence 57788888888888788888876543122 22344455555555444
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=11.66 E-value=2.5e+02 Score=27.91 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCC----CCCccccCCchhHHHHHhHHHHH
Q 010791 350 SARLKHWVSMGFGLLIIAIILHFTN----AIPINKQLYSFSYVCFTAGAAGI 397 (501)
Q Consensus 350 ~~~~~~l~~~G~~llilGlll~~~~----~~PinK~LWT~Sfvl~TsG~a~l 397 (501)
++.++.+.+++++++.+-++-++-| .+|--+ |...|..+.+..+.+
T Consensus 300 N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~Gy~~~l~~m~~i 349 (363)
T 2iub_A 300 NEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR--WKWGYPVVLAVMGVI 349 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc--CcHHHHHHHHHHHHH
Confidence 3556778888888888877754311 244433 555665554444333
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.29 E-value=1e+02 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=24.4
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHH
Q 010791 94 PWNGCTLADFVMPFFLFIVGVAIALALK 121 (501)
Q Consensus 94 ~WnG~T~aDLVFP~FLFivGvSiplSl~ 121 (501)
+|+-+-..-|||-..||++|+.|-+|=+
T Consensus 12 DY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 12 DYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 5666777889999999999999999975
No 6
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=9.23 E-value=8.8e+02 Score=23.08 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH---hhC-CCCCccccCCchhHHHHH
Q 010791 318 FEPE--GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL---HFT-NAIPINKQLYSFSYVCFT 391 (501)
Q Consensus 318 fDPE--GlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~l~~~G~~llilGlll---~~~-~~~PinK~LWT~Sfvl~T 391 (501)
.||- ++++|+--+.+.+.-..|-+-+++ +++++.+.++...+++.+.-..+ |+. ..+-++.+.+.++|.+.|
T Consensus 124 ~~~~~~pllnT~iLL~Ss~t~~~A~~a~~~--~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~lT 201 (261)
T 1v54_C 124 LNPLEVPLLNTSVLLASGVSITWAHHSLME--GDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 201 (261)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHT--TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 4652 456775555555444444444443 34455556655555544333333 322 124456555555555544
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.97 E-value=1.1e+02 Score=23.80 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.7
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHH
Q 010791 94 PWNGCTLADFVMPFFLFIVGVAIALALK 121 (501)
Q Consensus 94 ~WnG~T~aDLVFP~FLFivGvSiplSl~ 121 (501)
.|+-+...-|||-..||++|+.+-+|=+
T Consensus 13 DY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 13 DWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred chHHheecchhhHHHHHHHHHHHHHcCc
Confidence 5777778889999999999999999975
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=8.74 E-value=1.1e+03 Score=22.43 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=29.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Q 010791 321 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 370 (501)
Q Consensus 321 EGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~l~~~G~~llilGlll 370 (501)
-|++.++..+...+.....|.+..+.. + ++.+..|.++..+|.++
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN--P---RVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC--c---hHHHHHHHHHHHHHHHH
Confidence 678888888888888888888765432 1 23455555555555544
No 9
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=7.21 E-value=6.4e+02 Score=26.80 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=43.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhCCCCCccccCCchhHHHHHhHHHHHHHH
Q 010791 321 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAAGIVFS 400 (501)
Q Consensus 321 EGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~l~~~G~~llilGlll~~~~~~PinK~LWT~Sfvl~TsG~a~l~La 400 (501)
-|+++++.=.++.++|.....++- ....+.+ +++|.++- |+.+|.+=-|.|-++...|.-++.|+
T Consensus 426 gg~f~sigKavh~vfg~~F~~lFG----G~sw~~k--------ilig~ll~---WlG~n~rn~t~s~~~l~~G~ill~l~ 490 (495)
T 1p58_A 426 GGVFTSIGKALHQVFGAIYGAAFS----GVSWTMK--------ILIGVIIT---WIGMNSRSTSLSVSLVLVGIVTLYLG 490 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhc----chHHHHH--------HHHHHHHh---eEEeccCCchHHHHHHHHHHHhheee
Confidence 678888776677777777654431 1111111 33444442 68999999999999999998777665
No 10
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=7.13 E-value=1.4e+03 Score=21.71 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHHHHHh-hccccchHHHHHHHHHHHHHHHHHHHH---hhC-CCCCccccCCchhHHH
Q 010791 317 PFEPE--GLLSTISAILSGTIGIHYGHVL-IHFKGHSARLKHWVSMGFGLLIIAIIL---HFT-NAIPINKQLYSFSYVC 389 (501)
Q Consensus 317 ~fDPE--GlLstl~ai~~~llG~~aG~~L-~~~~~~~~~~~~l~~~G~~llilGlll---~~~-~~~PinK~LWT~Sfvl 389 (501)
++||- ++++|+--+.+.+.-..|-+-+ ++ +++++.+.++...+++.+.-..+ |+. ..+-++.+.+.++|.+
T Consensus 134 ~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~--~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~ 211 (273)
T 1qle_C 134 TFDPWHLPLINTLILLLSGVAVTWAHHAFVLE--GDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYM 211 (273)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 45763 4667755555544444454444 32 34455555655555444333333 332 1355667776666666
Q ss_pred HHh
Q 010791 390 FTA 392 (501)
Q Consensus 390 ~Ts 392 (501)
.|+
T Consensus 212 lTG 214 (273)
T 1qle_C 212 ATG 214 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
Done!