Query 010791
Match_columns 501
No_of_seqs 179 out of 538
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 14:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010791.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010791hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 10.3 78 0.0057 20.7 2.3 21 323-343 7-27 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 9.4 5.3E+02 0.038 22.2 10.7 73 318-392 122-200 (259)
3 d3d31c1 f.58.1.1 (C:13-260) Su 3.5 5.8E+02 0.043 20.7 5.2 31 323-353 54-84 (248)
4 d1pv7a_ f.38.1.2 (A:) Lactose 3.2 7E+02 0.051 20.3 5.5 26 321-346 45-70 (417)
5 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.9 5.8E+02 0.042 21.5 4.6 31 323-353 84-114 (290)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 2.9 1.2E+03 0.091 19.2 14.0 57 88-154 49-106 (447)
7 d1fftc_ f.25.1.1 (C:) Cytochro 2.8 3.9E+02 0.028 21.6 3.0 18 375-392 109-126 (185)
8 d1axda1 a.45.1.1 (A:81-210) Cl 2.8 2.4E+02 0.017 20.8 1.4 22 90-111 69-94 (129)
9 d1q90m_ f.23.25.1 (M:) PetM su 2.6 6.2E+02 0.045 15.1 3.0 19 327-345 10-28 (34)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1.5E+03 0.11 19.1 6.8 30 418-449 55-85 (248)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=10.29 E-value=78 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 010791 323 LLSTISAILSGTIGIHYGHVL 343 (501)
Q Consensus 323 lLstl~ai~~~llG~~aG~~L 343 (501)
-|||-|-+++..++..||-++
T Consensus 7 ylstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 588999999999999999876
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.35 E-value=5.3e+02 Score=22.21 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=36.8
Q ss_pred CCc--chhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH---hhC-CCCCccccCCchhHHHHH
Q 010791 318 FEP--EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL---HFT-NAIPINKQLYSFSYVCFT 391 (501)
Q Consensus 318 fDP--EGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~l~~~G~~llilGlll---~~~-~~~PinK~LWT~Sfvl~T 391 (501)
.|| -.+++|+--+.+...-..|-+-++ ++++++.++++...+++.++=... |+. ..+.++.+.+.++|.+.|
T Consensus 122 ~~~~~lpllnT~vLl~Ss~t~~~A~~~~~--~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 122 LNPLEVPLLNTSVLLASGVSITWAHHSLM--EGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 455 345566555544444444444443 234455555655555544433333 321 235677777776666655
Q ss_pred h
Q 010791 392 A 392 (501)
Q Consensus 392 s 392 (501)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=3.54 E-value=5.8e+02 Score=20.74 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 010791 323 LLSTISAILSGTIGIHYGHVLIHFKGHSARL 353 (501)
Q Consensus 323 lLstl~ai~~~llG~~aG~~L~~~~~~~~~~ 353 (501)
.++.++++.++++|+..+..+.+.+.+.++.
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~ 84 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRL 84 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence 4556666777788888888776544433443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.18 E-value=7e+02 Score=20.31 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcc
Q 010791 321 EGLLSTISAILSGTIGIHYGHVLIHF 346 (501)
Q Consensus 321 EGlLstl~ai~~~llG~~aG~~L~~~ 346 (501)
-|++.++..+...+.....|.+..+.
T Consensus 45 ~g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 45 TGIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888888898877543
No 5
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.94 E-value=5.8e+02 Score=21.51 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchHHH
Q 010791 323 LLSTISAILSGTIGIHYGHVLIHFKGHSARL 353 (501)
Q Consensus 323 lLstl~ai~~~llG~~aG~~L~~~~~~~~~~ 353 (501)
+++.+.++.++++|..++..+.+.+...++.
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~ 114 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKAT 114 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 3455666777789999999886655444443
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=1.2e+03 Score=19.22 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=28.8
Q ss_pred ccccccccCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHhhhCCChHHHHHHHHHHHHHHHHHHHHHh
Q 010791 88 ARIDHSPWNGCTLADFVMPFFLFIVGVAIAL-ALKFILILQKVPKINGAVKKIIFRTLKLLFWGIILQ 154 (501)
Q Consensus 88 ~~l~HA~WnG~T~aDLVFP~FLFivGvSipl-Sl~~~~~~~r~~~~~~~~~kil~Rsl~Lf~lGl~l~ 154 (501)
|.+. + .|+|.+|.-.-.-++.+|.++.- -..++ ..|. + -|+++.-+..+..++.++.
T Consensus 49 p~~~--~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l--~Dr~-g----~r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 49 PYLV--E-QGFSRGDLGFALSGISIAYGFSKFIMGSV--SDRS-N----PRVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHTT--S-STTCSSCHHHHHHHHHHHHHHHHHHHHHH--HHHS-C----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--H-hCcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHc-C----chHHHHHHHHHHHHHHhhc
Confidence 4454 3 58888887666666666554421 11211 1132 2 2345555555555555543
No 7
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=2.82 E-value=3.9e+02 Score=21.65 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=12.8
Q ss_pred CCCccccCCchhHHHHHh
Q 010791 375 AIPINKQLYSFSYVCFTA 392 (501)
Q Consensus 375 ~~PinK~LWT~Sfvl~Ts 392 (501)
....+-+.+.+.|.+.|+
T Consensus 109 g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 109 GMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp SCSCCCCSTTTHHHHHHH
T ss_pred ccccccccchhhHHHHHH
Confidence 467778888777766664
No 8
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=2.77 E-value=2.4e+02 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.316 Sum_probs=15.3
Q ss_pred cccccc---CCCcchhHH-HHHHHHH
Q 010791 90 IDHSPW---NGCTLADFV-MPFFLFI 111 (501)
Q Consensus 90 l~HA~W---nG~T~aDLV-FP~FLFi 111 (501)
+.+.+| +.+|+||+. +|.+..+
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~ 94 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCL 94 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHH
T ss_pred HccccccccCccccccHHHHHHHHHH
Confidence 455566 779999994 6766554
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.64 E-value=6.2e+02 Score=15.08 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010791 327 ISAILSGTIGIHYGHVLIH 345 (501)
Q Consensus 327 l~ai~~~llG~~aG~~L~~ 345 (501)
++.+..+++|+..|.+|.+
T Consensus 10 ~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 10 LTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 4455666788888877653
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.43 E-value=1.5e+03 Score=19.05 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=18.0
Q ss_pred hhhcchhHHHHHHHhhhhhhhh-hhccceecCC
Q 010791 418 LKWIGMNAMLVFVLGAQGILAG-FVNGWYYKNP 449 (501)
Q Consensus 418 f~~~G~Nai~~Yv~~~~~l~~~-~l~~~~~~~~ 449 (501)
+.+.|+=-|++|++- -++.. .+....+..+
T Consensus 55 yi~PG~~~l~~Fvi~--Pi~yT~~iaFTNy~tg 85 (248)
T d2r6gf1 55 YVYPGMAGMGLFVLF--PLVCTIAIAFTNYSST 85 (248)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHGGGBCCSST
T ss_pred hhhhHHHHHHHHHHH--hheeEEEEEEEEcCCC
Confidence 345699889998877 44443 3334444433
Done!