Query 010796
Match_columns 501
No_of_seqs 387 out of 1645
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 5.9E-28 2E-32 227.6 15.0 170 222-400 2-172 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 6.3E-28 2.1E-32 230.2 8.7 168 222-399 7-176 (196)
3 2gqc_A Rhomboid intramembrane 98.8 2E-09 6.7E-14 86.4 2.2 55 137-191 1-65 (70)
4 2lep_A Rhomboid protease GLPG 97.9 9.5E-09 3.2E-13 82.2 0.0 55 137-191 1-62 (69)
5 1uta_A FTSN, MSGA, cell divisi 50.0 16 0.00054 28.7 4.0 33 136-168 10-42 (81)
6 2hfv_A Hypothetical protein RP 48.5 15 0.00051 30.8 3.7 48 137-184 23-85 (97)
7 1x60_A Sporulation-specific N- 36.9 25 0.00086 27.1 3.2 34 136-169 10-43 (79)
8 2da7_A Zinc finger homeobox pr 14.4 73 0.0025 25.1 1.7 42 105-154 14-55 (71)
9 2y9j_Y Lipoprotein PRGK, prote 10.8 2.7E+02 0.0092 25.1 4.7 40 145-184 8-53 (170)
10 1e0f_I Haemadin, factor IIA; c 9.5 1E+02 0.0035 22.3 1.0 18 8-36 6-23 (57)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=5.9e-28 Score=227.55 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=132.8
Q ss_pred cchHHH-HHHHHHHHHHHHHHhcCCCCcccccchhhhhhhcchhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 010796 222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 300 (501)
Q Consensus 222 ~~P~vT-~LIai~v~VFll~~~~~~~~~~~~~l~~p~~~ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~fG~ 300 (501)
+.||+| .++++|+++|+++...+... . ..+....+..+.++||||++|++|+|.|+.|+++||+++|.+|.
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~-~-------~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~ 73 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQE-V-------MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGG 73 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHH-H-------HHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHH-H-------HHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 346788 99999999999987654210 0 11111222235789999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHhHhhCCCccccchHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHH
Q 010796 301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 380 (501)
Q Consensus 301 ~lE~~lGs~r~l~lyllsgl~g~l~~~l~~~~~~vGaSGaVfGLlGa~~v~~~~~~~~~~~~~~~~l~~~~li~l~l~~i 380 (501)
.+|+.+|++|++.+|+++++.++++++++.+++.+|+||+|||++|+.++....+++.. ..++.+...+.++++++++.
T Consensus 74 ~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~ 152 (181)
T 2xov_A 74 AVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWF 152 (181)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCce-eeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776799999999999999887554444431 22344555555666666654
Q ss_pred hhcCCCchhhhhHhhhhhhc
Q 010796 381 ISNFGPVDTWAHLGAAFTDL 400 (501)
Q Consensus 381 ~~~~~~Is~~AHLgGll~GL 400 (501)
....+++|++||++|+++|+
T Consensus 153 ~~~~~~v~~~aHlgG~l~G~ 172 (181)
T 2xov_A 153 DLFGMSMANGAHIAGLAVGL 172 (181)
T ss_dssp TSSCCSSCHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHH
Confidence 33346899999999999993
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=6.3e-28 Score=230.18 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=127.7
Q ss_pred cchHHH-HHHHHHHHHHHHHHhcCCCCcccccchhhhhhhcchhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 010796 222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP 300 (501)
Q Consensus 222 ~~P~vT-~LIai~v~VFll~~~~~~~~~~~~~l~~p~~~ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~fG~ 300 (501)
+.|++| .++++|+++|+++...+... . ..+....+..+..+||||++|++|+|.|+.|+++||+++|.+|.
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~-~-------~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~ 78 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDD-I-------MYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGG 78 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHH-H-------HHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHH-H-------HHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 445677 99999999999987654210 0 11112222235789999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHhHhhCCCccccchHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHH
Q 010796 301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI 380 (501)
Q Consensus 301 ~lE~~lGs~r~l~lyllsgl~g~l~~~l~~~~~~vGaSGaVfGLlGa~~v~~~~~~~~~~~~~~~~l~~~~li~l~l~~i 380 (501)
.+|+.+|++|++.+|+++++.|+++++++.++..+|+||+|||++|+.++....++.. ..++.+...++++++++++.
T Consensus 79 ~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (196)
T 2nr9_A 79 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHL--FDLPEGFFTMLLVGIALGFI 156 (196)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTS--CCCCCSSTTTTTTTTTHHHH
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchh--hcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877679999999999999887765544433 11222222333333444443
Q ss_pred hh-cCCCchhhhhHhhhhhh
Q 010796 381 IS-NFGPVDTWAHLGAAFTD 399 (501)
Q Consensus 381 ~~-~~~~Is~~AHLgGll~G 399 (501)
.. ..+++|++||++|+++|
T Consensus 157 ~~~~~~~v~~~aHlgG~l~G 176 (196)
T 2nr9_A 157 SPLFGVEMGNAAHISGLIVG 176 (196)
T ss_dssp SCSSCCTTCHHHHHHHHHHH
T ss_pred HhccCCCccHHHHHHHHHHH
Confidence 22 23479999999999999
No 3
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=98.76 E-value=2e-09 Score=86.38 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=50.1
Q ss_pred hhh--hccCCChhHHHHHHHHHhhcCCceeEecCccc------hhhhHHHHHhhhh--hccCCCC
Q 010796 137 HSR--SGEINAKTELDSLDAYLGKLNTDAKFSTDQTT------ERNLVAAQLSISK--SSKRGYM 191 (501)
Q Consensus 137 m~~--~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~------de~~~~~~~~e~~--~~~p~~~ 191 (501)
|.+ +++++|||.||+|+|||.++||++++++++++ ||++.+++++|++ .++|+++
T Consensus 1 M~~~~v~~l~~~r~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~~~~~a~~el~~F~~~P~~~ 65 (70)
T 2gqc_A 1 MSAVQVLKFPLSVDLAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLAEQVRELYRRYPEGDPQA 65 (70)
T ss_dssp CCCCEEEEECTTTTGGGHHHHHHTTTCCSEEEEETTEEEEECCCSSHHHHHHHHHTTSSSTTTTS
T ss_pred CCcceEEEECCHHHHHHHHHHHHHCCCcEEEEECCCceEEEEcCHHHHHHHHHHHHHHHhCCCcc
Confidence 555 89999999999999999999999999987765 7889999999999 8999998
No 4
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=97.94 E-value=9.5e-09 Score=82.15 Aligned_cols=55 Identities=2% Similarity=-0.052 Sum_probs=48.9
Q ss_pred hhhhccCCChhHHHHHHHHHhhcCCceeEecCccc-----hhhhHHHHHhhhh--hccCCCC
Q 010796 137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT-----ERNLVAAQLSISK--SSKRGYM 191 (501)
Q Consensus 137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~-----de~~~~~~~~e~~--~~~p~~~ 191 (501)
|+++++++||++||+|+|||+++||+++++++..+ ||++.++|++|++ .++|+|-
T Consensus 1 M~~l~~~~N~~~Aq~f~dyL~s~gI~~~v~~e~~~elWl~de~~~~~A~~el~~f~~~P~~~ 62 (69)
T 2lep_A 1 MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPADL 62 (69)
Confidence 78899999999999999999999999999987543 7778899999998 7888775
No 5
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=49.98 E-value=16 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.2
Q ss_pred hhhhhccCCChhHHHHHHHHHhhcCCceeEecC
Q 010796 136 LHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168 (501)
Q Consensus 136 ~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~ 168 (501)
..+|+++|.++..|+++.+-|+.+|.+..++..
T Consensus 10 ~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~~~ 42 (81)
T 1uta_A 10 WMVQCGSFRGAEQAETVRAQLAFEGFDSKITTN 42 (81)
T ss_dssp CCCBCCEESCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCCeEEEeC
Confidence 479999999999999999999999999988853
No 6
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=48.47 E-value=15 Score=30.78 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=40.7
Q ss_pred hhhhccCCChhHHHHHHHHHhhcCCceeEecCcc-----------c----hhhhHHHHHhhhh
Q 010796 137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQT-----------T----ERNLVAAQLSISK 184 (501)
Q Consensus 137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~-----------~----de~~~~~~~~e~~ 184 (501)
|.++.+-+||-.|+-..+-|+..||++.+..+.- . +|++.++|+..++
T Consensus 23 M~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De~ms~~~GeIg~~P~rwlV~eed~~~Ar~LL~ 85 (97)
T 2hfv_A 23 LRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLT 85 (97)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred ceeeeecCCHHHHHHHHHHHHhCCCCEEEcCCcchhhcCccccCcEEEEEChhhHHHHHHHHH
Confidence 8999999999999999999999999999985421 1 6677788888886
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.88 E-value=25 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=30.3
Q ss_pred hhhhhccCCChhHHHHHHHHHhhcCCceeEecCc
Q 010796 136 LHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQ 169 (501)
Q Consensus 136 ~m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~ 169 (501)
..+++++|.++..|+.+.+-|..+|.+..+...+
T Consensus 10 ~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~ 43 (79)
T 1x60_A 10 YKVQIGAFKVKANADSLASNAEAKGFDSIVLLKD 43 (79)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCC
Confidence 4799999999999999999999999999887533
No 8
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.37 E-value=73 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCchhhhhhhhhhccCCChhHHHHHHH
Q 010796 105 ECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDA 154 (501)
Q Consensus 105 ~~~~~~l~~y~~kl~~~~~~~s~~~~~~~~~~m~~~~~~~~~~~aqaf~d 154 (501)
++||++|++||.+= ..|+ +++. +.+-+-..++-...--+|..
T Consensus 14 k~ql~~Lk~yF~~n----~~Ps---~eei-~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 14 KDHMSVLKAYYAMN----MEPN---SDEL-LKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp THHHHHHHHHHHHC----SSCC---HHHH-HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCC---HHHH-HHHHHHhCCCHHHHHHHHhh
Confidence 78999999999862 1222 2232 22444455555555555654
No 9
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=10.83 E-value=2.7e+02 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHhhcCCceeEecCc---cc---hhhhHHHHHhhhh
Q 010796 145 AKTELDSLDAYLGKLNTDAKFSTDQ---TT---ERNLVAAQLSISK 184 (501)
Q Consensus 145 ~~~~aqaf~dYl~~~~i~~~v~~~~---~~---de~~~~~~~~e~~ 184 (501)
+++.|.+-++.|++.||+.++..++ .. ++++..++|..+.
T Consensus 8 ~~~da~~i~~~L~~~~I~y~~~~~~~~g~~I~Vp~~~~~~ar~~La 53 (170)
T 2y9j_Y 8 DQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIK 53 (170)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECTTSCEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCeEEEECHHHHHHHHHHHH
Confidence 4677888999999999999998762 22 6777888888877
No 10
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=9.46 E-value=1e+02 Score=22.34 Aligned_cols=18 Identities=33% Similarity=0.870 Sum_probs=13.4
Q ss_pred cccCCCCCccCchhhhhhccccccccccc
Q 010796 8 CKIPSKEQLLPIPKIVRQNERGFKCHCIS 36 (501)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (501)
-|+||.| .|-|+.|+|..
T Consensus 6 gkvpcpd-----------gevgytcdcge 23 (57)
T 1e0f_I 6 GKVPCPD-----------GEVGYTCDCGE 23 (57)
T ss_dssp SSSBCCS-----------SSCSSCEECSS
T ss_pred ccccCCC-----------CceeeeccCCc
Confidence 3778866 47899999964
Done!