Query 010798
Match_columns 501
No_of_seqs 261 out of 2171
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-55 2.4E-60 437.0 55.7 436 44-483 12-451 (455)
2 PRK10189 MATE family multidrug 100.0 8.9E-52 1.9E-56 413.2 57.5 444 45-498 25-478 (478)
3 PRK00187 multidrug efflux prot 100.0 1.2E-50 2.7E-55 405.1 56.6 427 44-473 5-442 (464)
4 PRK09575 vmrA multidrug efflux 100.0 1.5E-48 3.2E-53 389.6 53.9 427 45-478 8-438 (453)
5 PRK10367 DNA-damage-inducible 100.0 3.3E-48 7.2E-53 383.9 55.3 424 45-479 5-434 (441)
6 PRK01766 multidrug efflux prot 100.0 8.8E-48 1.9E-52 386.1 56.6 433 44-479 7-446 (456)
7 TIGR01695 mviN integral membra 100.0 1E-35 2.2E-40 303.4 52.8 413 51-475 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.3E-35 2.9E-40 301.5 49.6 414 52-474 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.5E-35 3.2E-40 287.1 44.1 338 57-397 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 1.1E-36 2.4E-41 298.6 33.6 449 45-495 24-472 (473)
11 PRK15099 O-antigen translocase 100.0 5.3E-34 1.1E-38 282.9 47.3 405 51-474 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 8.6E-29 1.9E-33 245.7 51.5 386 79-475 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2.7E-28 5.9E-33 237.2 51.3 419 49-475 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 5.8E-27 1.3E-31 238.0 47.9 399 48-474 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 1.1E-24 2.4E-29 220.8 42.7 390 46-457 3-394 (480)
16 COG0534 NorM Na+-driven multid 99.9 1.7E-20 3.6E-25 186.3 27.6 208 266-476 13-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 3.4E-20 7.4E-25 184.1 28.4 206 267-474 6-211 (441)
18 PRK00187 multidrug efflux prot 99.9 4.6E-20 9.9E-25 184.9 27.7 206 43-249 230-442 (464)
19 PRK10189 MATE family multidrug 99.9 8.2E-20 1.8E-24 183.1 27.9 205 266-473 25-235 (478)
20 PRK01766 multidrug efflux prot 99.9 1E-19 2.2E-24 183.0 27.4 207 266-475 8-218 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.4E-19 3E-24 181.2 26.5 206 266-474 8-214 (453)
22 TIGR01695 mviN integral membra 99.8 5.8E-17 1.3E-21 165.5 32.1 206 44-251 218-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.1E-15 2.3E-20 143.1 33.3 270 52-338 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 4.4E-16 9.4E-21 150.8 27.1 194 278-474 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 9.9E-18 2.1E-22 143.6 9.0 162 278-441 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 8E-15 1.7E-19 145.9 31.0 205 45-251 194-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 4.4E-15 9.6E-20 151.1 24.7 202 44-250 220-433 (488)
28 COG0728 MviN Uncharacterized m 99.7 2.1E-13 4.5E-18 133.7 34.6 206 44-251 227-437 (518)
29 PF01554 MatE: MatE; InterPro 99.7 2.2E-17 4.7E-22 141.5 6.0 160 57-217 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 7.7E-13 1.7E-17 134.6 34.7 200 45-250 203-404 (492)
31 PRK15099 O-antigen translocase 99.6 2.5E-13 5.5E-18 135.0 26.5 201 43-250 209-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.9E-12 6.2E-17 118.3 31.6 246 68-338 3-251 (251)
33 COG2244 RfbX Membrane protein 99.5 2.3E-12 5E-17 130.8 26.2 185 44-233 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.4 4.6E-09 1E-13 105.5 34.2 420 53-474 5-469 (549)
35 KOG2864 Nuclear division RFT1 99.3 9.1E-08 2E-12 89.8 34.4 412 48-475 7-449 (530)
36 KOG1347 Uncharacterized membra 99.2 2.3E-09 4.9E-14 106.3 20.4 205 266-474 24-229 (473)
37 PF07260 ANKH: Progressive ank 99.1 1.1E-06 2.3E-11 79.4 30.0 317 46-370 8-343 (345)
38 PF04506 Rft-1: Rft protein; 98.5 1.5E-05 3.2E-10 80.6 21.0 202 49-251 253-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 4.7E-05 1E-09 63.5 18.5 79 171-251 2-80 (146)
40 COG4267 Predicted membrane pro 98.2 0.0058 1.3E-07 56.8 32.0 321 97-444 72-414 (467)
41 KOG2864 Nuclear division RFT1 98.1 0.002 4.3E-08 61.4 23.3 199 50-250 240-448 (530)
42 PF01943 Polysacc_synt: Polysa 98.1 0.0013 2.8E-08 61.1 22.2 185 275-474 4-190 (273)
43 PF07260 ANKH: Progressive ank 98.0 0.004 8.6E-08 56.9 22.4 155 266-430 7-168 (345)
44 PF14667 Polysacc_synt_C: Poly 98.0 4.5E-05 9.8E-10 63.6 9.5 79 394-475 2-80 (146)
45 PF13440 Polysacc_synt_3: Poly 97.7 0.014 3E-07 53.4 22.5 163 293-473 8-171 (251)
46 COG4267 Predicted membrane pro 74.1 87 0.0019 30.2 20.0 135 323-474 76-210 (467)
47 PF05975 EcsB: Bacterial ABC t 65.4 1.4E+02 0.0031 29.3 17.5 36 343-378 89-124 (386)
48 PF04505 Dispanin: Interferon- 52.8 88 0.0019 22.8 6.8 39 326-364 35-73 (82)
49 PF05684 DUF819: Protein of un 49.2 2.7E+02 0.0058 27.3 11.9 24 342-365 72-95 (378)
50 PRK09757 PTS system N-acetylga 46.9 2.4E+02 0.0051 26.1 18.0 35 318-352 108-142 (267)
51 TIGR00822 EII-Sor PTS system, 41.9 2.8E+02 0.0061 25.5 17.1 36 317-352 106-141 (265)
52 PF03904 DUF334: Domain of unk 41.1 1.3E+02 0.0027 26.7 6.8 39 121-159 142-180 (230)
53 PF10669 Phage_Gp23: Protein g 37.9 57 0.0012 24.1 3.6 7 472-478 33-39 (121)
54 PF05313 Pox_P21: Poxvirus P21 36.1 2E+02 0.0043 24.5 6.9 26 225-250 135-160 (189)
55 PF02487 CLN3: CLN3 protein; 35.9 4.4E+02 0.0096 26.0 14.7 52 42-93 236-292 (402)
56 PF11446 DUF2897: Protein of u 35.7 32 0.00069 22.8 1.9 25 454-478 8-32 (55)
57 PF03547 Mem_trans: Membrane t 34.0 2.1E+02 0.0046 27.9 8.5 15 354-368 33-47 (385)
58 TIGR00383 corA magnesium Mg(2+ 33.5 1.6E+02 0.0035 27.8 7.3 56 419-477 254-317 (318)
59 TIGR00881 2A0104 phosphoglycer 31.1 4.6E+02 0.01 24.8 10.6 11 330-340 48-58 (379)
60 PRK09546 zntB zinc transporter 31.1 1.7E+02 0.0036 27.9 6.9 50 425-477 266-323 (324)
61 PRK01637 hypothetical protein; 30.8 4.4E+02 0.0096 24.5 20.3 9 334-342 115-123 (286)
62 PF05814 DUF843: Baculovirus p 30.7 2.1E+02 0.0046 20.8 6.1 26 449-474 22-47 (83)
63 PF00558 Vpu: Vpu protein; In 27.8 1.1E+02 0.0023 22.2 3.6 15 469-483 27-41 (81)
64 PRK06814 acylglycerophosphoeth 26.8 1E+03 0.022 27.4 40.2 33 183-215 129-161 (1140)
65 PF10337 DUF2422: Protein of u 26.7 6.7E+02 0.015 25.3 11.6 29 43-71 11-39 (459)
66 TIGR00765 yihY_not_rbn YihY fa 26.3 5E+02 0.011 23.7 21.6 17 108-124 102-118 (259)
67 COG0598 CorA Mg2+ and Co2+ tra 25.7 5.8E+02 0.013 24.2 9.6 55 420-477 259-321 (322)
68 KOG2532 Permease of the major 25.7 7.1E+02 0.015 25.2 10.8 83 390-473 133-217 (466)
69 PF04995 CcmD: Heme exporter p 25.1 1.9E+02 0.004 18.3 4.7 13 453-465 7-19 (46)
70 PRK11085 magnesium/nickel/coba 24.1 2.8E+02 0.006 26.4 6.8 55 420-477 253-315 (316)
71 PF01102 Glycophorin_A: Glycop 24.0 1.1E+02 0.0025 24.2 3.5 25 452-476 68-92 (122)
72 PF04505 Dispanin: Interferon- 23.4 3E+02 0.0065 20.0 6.3 34 110-143 41-74 (82)
73 PF14184 YrvL: Regulatory prot 22.9 4.1E+02 0.0089 21.5 13.6 100 130-231 5-105 (132)
74 PRK10739 putative antibiotic t 22.9 5.1E+02 0.011 22.6 9.0 58 332-393 21-78 (197)
75 COG5415 Predicted integral mem 22.6 4.6E+02 0.0099 22.9 7.0 18 432-449 51-68 (251)
76 PF04791 LMBR1: LMBR1-like mem 22.4 8.1E+02 0.018 24.7 11.9 50 312-361 76-129 (471)
77 KOG0569 Permease of the major 22.1 8.5E+02 0.018 24.8 15.1 256 1-274 214-470 (485)
78 PRK10913 dipeptide transporter 20.7 7.1E+02 0.015 23.4 11.5 19 269-287 208-226 (300)
79 PRK11677 hypothetical protein; 20.4 2.1E+02 0.0045 23.2 4.4 18 479-496 36-53 (134)
80 PF12794 MscS_TM: Mechanosensi 20.4 7.7E+02 0.017 23.7 24.4 29 344-372 118-146 (340)
81 PRK08156 type III secretion sy 20.1 8.1E+02 0.018 23.8 18.9 27 470-496 197-223 (361)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-55 Score=436.96 Aligned_cols=436 Identities=26% Similarity=0.404 Sum_probs=409.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
.++..|+++++++|++++++.+.+++.+|++++||+|++++|+.+++.++.. +...+..|++.|.++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 4568899999999999999999999999999999999999999999999999 888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMM-VYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
++++..++++.+.++++++..+ .+++.++++.+++.++++.+.+.+|+++..++.++..+...+.+.+|+.|++|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977775 588999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hC-cccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChHhhhhHHHHHHHHHHH
Q 010798 203 ISAATLVLHLLLSWLVVYK-FG-AGLIGASLVLSLSWYIIVGAQFAYILMSDK-CKHTWTGFSVQAFSGICEFLKLSGSS 279 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~-~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~~~~p~ 279 (501)
.+++++++|+++|++|++. ++ +|+.|+++||++++.+.+++...++.++++ ......+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 999999999999999999999988888753 22222233233457799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 010798 280 AVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISF 359 (501)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (501)
+++++.+...+...+.+.+++|+ .++|+|+++.++.++.++++.|++++.+|.+++++|+||++++++..+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 4566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHH
Q 010798 360 IISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLG 439 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 439 (501)
.+++..+++++++++++.++|++|+++.+.+..++++.++..++++.+.+..+.++|.||+|.++..++++.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Q 010798 440 CLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWKKEVEK 483 (501)
Q Consensus 440 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~ 483 (501)
+++..+. +|..|+|++...++.+..++..++++|.+|+++..+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9998876 899999999999999999999999999999876544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.9e-52 Score=413.16 Aligned_cols=444 Identities=16% Similarity=0.215 Sum_probs=401.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEM 124 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 124 (501)
-+..|++++.++|.++++++..+.+.+|+.+++++|++++|+++++.++.. +...+..|++++.++.++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 456899999999999999999999999999999999999999999999988 8888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHH
Q 010798 125 LGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLG--ESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA 201 (501)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (501)
+++..+.++.++.+++++.+++ +++.++++.++. .++|+.+.+..|+++..++.++..+...+.+++|+.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988865 777888988884 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CcccchhHHHHHHHHHHHHHHHHHHHHhc-c-cccccccC-CChHhhhhHHHHHH
Q 010798 202 YISAATLVLHLLLSWLVVYKF----GAGLIGASLVLSLSWYIIVGAQFAYILMS-D-KCKHTWTG-FSVQAFSGICEFLK 274 (501)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~----~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~il~ 274 (501)
..+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..+++.++ + ..+.++++ +...+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999863 68999999999999999888776555543 1 12222221 11223577999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 010798 275 LSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVV 354 (501)
Q Consensus 275 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~ 354 (501)
.|+|.+++.........+.+.+++.+|+ .++|+|+++.++.++.+++..|++++.+|.+++++|++|.+++++..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999988888888898885 45679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHH
Q 010798 355 TSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIV 434 (501)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 434 (501)
.++++.+++.++++++++++++..+|++|+++.+.+..++++.++..++++++.+..+.+++.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhhhhcccCc
Q 010798 435 GIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWKKEVEKAKMRLDKWEDKQQPL 498 (501)
Q Consensus 435 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (501)
.+|+.+++....++|+.|+|++..+++.+..++.++++++.+|+++. ...|.|.+|+
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~-------~~~~~~~~~~ 478 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY-------PRPEPQKCEK 478 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC-------CCCCcccccC
Confidence 99999999887779999999999999999999999999999998843 3345555553
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.2e-50 Score=405.09 Aligned_cols=427 Identities=26% Similarity=0.342 Sum_probs=387.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
+++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.. +...+..|++++..+.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 4567899999999999999999999999999999999999999999999999 777888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYI 203 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (501)
++++.++.++.+..+++++..++..+.++++.+++.++|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999888766557789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----CcccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-ccCCChHhhhhHHHHHHHHH
Q 010798 204 SAATLVLHLLLSWLVVYKF----GAGLIGASLVLSLSWYIIVGAQFAYILMSDKCK-HT-WTGFSVQAFSGICEFLKLSG 277 (501)
Q Consensus 204 ~~~~~~~~i~~~~~li~~~----~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~il~~~~ 277 (501)
++++.++|+++++++++.+ ++|+.|+++|+.+++....+....++.++++.+ .+ +.+..+.+++.+|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999763 389999999999998888776666665542221 11 11122233567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010798 278 SSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSI 357 (501)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 357 (501)
|.++++..+.....+++.+++++|+ .++|++++++++..+...+..+++++..+.++|++|+||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999996 45669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCC--cH---HHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHH
Q 010798 358 SFIISVVFAVIVLALRHVISYAFTS--GE---VVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYY 432 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 432 (501)
+.+++++.++++.++++++.++|++ |+ ++.+.+..++++.+++.++.+++.+..+++++.||+|.++++++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999974 43 678889999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 010798 433 IVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTI 473 (501)
Q Consensus 433 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 473 (501)
++++|+.+++.+.+++|+.|+|+++.+++++..+....+++
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999998887766663
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.5e-48 Score=389.63 Aligned_cols=427 Identities=16% Similarity=0.222 Sum_probs=386.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
++..|++++.++|.+++++...+++.+|+.+++++ |++++++++++.++.. +...+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45678999999999999999999999999999996 9999999999999999 777788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
++++..++++.++.+++++..++ ..+.++++.+++.++++.+.+.+|+++..++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988865 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChHhhhhHHHHHHHHHHHHH
Q 010798 203 ISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDK-CKHTWTGFSVQAFSGICEFLKLSGSSAV 281 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~~~~p~~~ 281 (501)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..+++.+++. .+.+.+.++ .+++.+|++++.|+|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHH
Confidence 999999999999999998888999999999999999999887777665432 222222222 235678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 010798 282 MLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFII 361 (501)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (501)
+.....+...+...+.+++|+ +.++|+|+++.++..+...+..|++++..|.++|++|+||+|++++..+.++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999998888888888885 3357799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCC-cHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHH
Q 010798 362 SVVFAVIVLALRHVISYAFTS-GEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGC 440 (501)
Q Consensus 362 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 440 (501)
+++.++++.++++++.++|++ |+++.+.+..++++.+++.+++++..+..+.+++.||++.++..+... +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 788999999999999999999999999999999999999999999876 578999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChH
Q 010798 441 LLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWK 478 (501)
Q Consensus 441 ~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~ 478 (501)
++... +|+.|+|+++.+++.+..++....++| +|+
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 98765 699999999999999988877766644 443
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.3e-48 Score=383.91 Aligned_cols=424 Identities=17% Similarity=0.175 Sum_probs=369.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
.++.|++++.++|.++++++..+.+.+|+.+++++ |++++++++++.++.. +...+..|++.+.++.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35578999999999999999999999999999998 7889999999999999 778888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
++++..++++.++++++++..++ ..+.++++.+++.++++.+.+.+|+++..++.++..+..++.+++|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888755 66788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhccccc-ccccCCChHhhhhHHHHHHHHHHHHH
Q 010798 203 ISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCK-HTWTGFSVQAFSGICEFLKLSGSSAV 281 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~il~~~~p~~~ 281 (501)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++...++.++++.+ .+...++.+.++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888776666542211 11111121112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 010798 282 MLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFII 361 (501)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (501)
+...+...+.+.+.+++++|+ .++|+|+++.++.++.+++..|++++.+|.++|++|+||++++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 457799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccC---cchhHHHHHHHHHHHHhHHH
Q 010798 362 SVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCG---WQAFVAYVNIACYYIVGIPL 438 (501)
Q Consensus 362 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~ 438 (501)
+.+.+++++++++++..+|++|+++.+.+..++++.++..+.........+++++.+ |+|.++.++.++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999998876443334444444455555 599999999888664222
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChHH
Q 010798 439 GCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWKK 479 (501)
Q Consensus 439 ~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 479 (501)
..+ ++|+.|+|++..+++.++.++...+++| +|++
T Consensus 400 ---~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 400 ---TLP--WLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred ---HHH--HcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 212 3799999999999999999988877655 4854
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.8e-48 Score=386.09 Aligned_cols=433 Identities=22% Similarity=0.365 Sum_probs=393.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
.++..|++++.++|.+++++...+.+.+|..+++++|++++++++++.++.. +...+..|++.+..+.++|++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 3567899999999999999999999999999999999999999999999877 677788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
+.++..+.++.+.++++++..++ +.+.+++..+++.++++.+.+..|+++.+++.++..+...+++++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888765 66778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----hCcccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccccCCChHhhhhHHHHHHHH
Q 010798 203 ISAATLVLHLLLSWLVVYK----FGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCK--HTWTGFSVQAFSGICEFLKLS 276 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~----~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~~~ 276 (501)
.++++.++|+++++++++. .++|+.|+++|+.+++.+..++..++.+++++.+ +.+.++...+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 2479999999999999999998877766543221 111222223356799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 010798 277 GSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTS 356 (501)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (501)
+|.+++...+...+.++..+++++|+. ++|+++++.++.++...++.+++.+..+.++|++|+||++++++..+.++.
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999854 466999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhH
Q 010798 357 ISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGI 436 (501)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (501)
++..++++.++++..+++++.++|++|+++.+.+..++++..++.++.+++....+++++.||++.++++++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChHH
Q 010798 437 PLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWKK 479 (501)
Q Consensus 437 ~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 479 (501)
|..+++.+.+++|+.|+|+++.+++++..++.++++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999999999998888887765543
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1e-35 Score=303.40 Aligned_cols=413 Identities=14% Similarity=0.107 Sum_probs=343.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHH
Q 010798 51 LVRLAAPAVFVYLINNLMSLSTRVFCGH-LGNLEL-AAASLGNSGIQLFAYGLM-LGMGSAVETLCGQAYGAGRYEMLGV 127 (501)
Q Consensus 51 i~~~~~p~~~~~~~~~~~~~~~~~~i~~-~g~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~ 127 (501)
+.|.+.-.+++++++.+++++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999999 599999 899999999873333333 568888777776654322 56776
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHH
Q 010798 128 YMQRATFVLLATGVP-VMMV-YIFCKPMLILL--GESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYI 203 (501)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (501)
.+.+++....+++.+ ..++ +++.+++..++ +.+++..+.+..|++++.++.++..+....++++|+.++++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766666544443 3444 66677777777 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccchhH--HHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHH
Q 010798 204 SAATLVLHLLLSWLVVYKFGAGLIGAS--LVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAV 281 (501)
Q Consensus 204 ~~~~~~~~i~~~~~li~~~~~gi~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~ 281 (501)
+++.+++++...+++ ..++|..|++ +++++++.+..++.+.+.++++ .+.+ .+++. +++.+|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAG-FLLK-PRFNF-RDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC-Cccc-CcCCC-CChhHHHHHHHHHHHHH
Confidence 999988776653333 3468999988 9999999998888766665542 2111 12222 24568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 010798 282 MLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFM-VSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFI 360 (501)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (501)
++....+...++..+.+.+|.+ ++++|+.+.++.+++.. +..+++++..|.++++++++|+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877754 45699999999998765 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCC----cHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhH
Q 010798 361 ISVVFAVIVLALRHVISYAFTS----GEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGI 436 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (501)
+++|.++++.++++++..++.+ |++..+.+..++++++++.++.++...+.+.+++.||+|.+++.+... .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999976 456788899999999999999999999999999999999999999888 57899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010798 437 PLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRT 475 (501)
Q Consensus 437 ~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 475 (501)
++.+++.+. +|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888765 7999999999999999988887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.3e-35 Score=301.53 Aligned_cols=414 Identities=14% Similarity=0.137 Sum_probs=344.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 010798 52 VRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQ 130 (501)
Q Consensus 52 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 130 (501)
.|.+.|.+++++...+.+++|..+++|+ |++++|+++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4678999999999999999999999995 999999999999998844555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010798 131 RATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLV 209 (501)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 209 (501)
+++.+..+.+++.+++ ..+.+++...+..+++. ..++++..+..++..+....++++|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988865 55566665655555443 245778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----CcccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChHhhhhHHHHHHHHHHHHHH
Q 010798 210 LHLLLSWLVVYKF-----GAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHT--WTGFSVQAFSGICEFLKLSGSSAVM 282 (501)
Q Consensus 210 ~~i~~~~~li~~~-----~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~~~~p~~~~ 282 (501)
+++.++..++..+ +.|+.|+++++.+++.+..++...+++++++.+.+ +.+....+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9988776665432 35678888999999998888776665544222211 1111223356799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----Cc-HH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 010798 283 LCLETWYFQILVLIAGLL----DN-PE---LALDSL-SVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVV 353 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~----~~-~~---~a~a~~-~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 353 (501)
++...+...+|+.++++. |. .. ..++.| +++.++.+++..+..+++++..|.++++++++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998877643 21 11 122333 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHH
Q 010798 354 VTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYI 433 (501)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 433 (501)
.+++...+++|.++++..+++++..++.++++ +..+++++++..++.++.....+.+++.||+|..++.++.. .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 56789999999999999999999999999999999999998 47
Q ss_pred HhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 434 VGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 434 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+++++.+++...+.+|..|+|+++.+++.+..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888763345899999999999999999988887765
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.5e-35 Score=287.09 Aligned_cols=338 Identities=33% Similarity=0.576 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 010798 57 PAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVL 136 (501)
Q Consensus 57 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 136 (501)
|.+++++...+...+|+.+++++|++++|+++.+.++.. +...+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999888 8888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 010798 137 LATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLS 215 (501)
Q Consensus 137 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 215 (501)
.+++++.+++ +.+.+++..+++.+++..+.+..+++++.++.++..+..+..+.+++.|+++.++..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998865 778888888888788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhC-cccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 216 WLVVY-KFG-AGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQIL 293 (501)
Q Consensus 216 ~~li~-~~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~ 293 (501)
+++++ .++ +|+.|+++++.+++.+..++...+.+++++.+.++.+....+++.+|+++++++|..+++....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 667 8899999999999999988887666654333333222222235679999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010798 294 VLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALR 373 (501)
Q Consensus 294 ~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (501)
+.+++.+|. .++++|+++.++.++...++.+++++..|.++++++++|+++.++..++++++.++++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcHHHHHHHHhHhHHH
Q 010798 374 HVISYAFTSGEVVANAVSELCPLL 397 (501)
Q Consensus 374 ~~i~~l~~~~~~~~~~~~~~l~~~ 397 (501)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999988888887764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=298.61 Aligned_cols=449 Identities=46% Similarity=0.780 Sum_probs=425.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEM 124 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 124 (501)
..+.|++++++.|.++..+.+.+.+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999977888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHH
Q 010798 125 LGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYIS 204 (501)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 204 (501)
...+.+++..+....+++...++.+.++++..++.++++...+..|.++..+..+.+........+++++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHH
Q 010798 205 AATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLC 284 (501)
Q Consensus 205 ~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~ 284 (501)
....++++.+++++++..++|..|++++..+++.+.......+..... ....|..++.+ ++.+++.++.++|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999998887776653 55667777777 8899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010798 285 LETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVV 364 (501)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (501)
+++..+.+..+..+.++.....+++.++..++....++++.+++.+...++++.+|+++++.+|...+.+...++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999878888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHH
Q 010798 365 FAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGF 444 (501)
Q Consensus 365 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 444 (501)
.+..+....+.+..+|++|+++.+...+..++++...++++.+.+..+..++.|..+...++++.+..+..+|+.+.+.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhhhhcc
Q 010798 445 KFNFGAKGIWSGMIGGTAMQTIILLWVTIRTDWKKEVEKAKMRLDKWEDKQ 495 (501)
Q Consensus 445 ~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (501)
..++|..|+|.++..+..+..........+.+|+++..+..++..+++.+.
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 888999999999999988888888888999999999999888877766543
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.3e-34 Score=282.88 Aligned_cols=405 Identities=12% Similarity=0.023 Sum_probs=338.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHH
Q 010798 51 LVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYM 129 (501)
Q Consensus 51 i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~ 129 (501)
+.|.+.+...++++..+.+++-..+++|+ |++++|.++..+++...+......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 56788899999999999999999999996 9999999999999988555555888999989999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010798 130 QRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATL 208 (501)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 208 (501)
++++.+.++.+++.+++ +.+.+|+...+..+++. ..+..+..+..++..+.....+.+|+.++++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988855 77778888877666642 23455666666667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHHHH
Q 010798 209 VLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETW 288 (501)
Q Consensus 209 ~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~ 288 (501)
++|+.+ +++...+ .|+.|+++|+++++.+..+....++.++++.+.+..+++. +++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 4999999999999999887776666554332222212222 256689999999999999999999
Q ss_pred HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010798 289 YFQILVLIAG-LLDNPELALDSLSVCMAVSGL-LFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFA 366 (501)
Q Consensus 289 ~~~~~~~~~~-~~~~~~~a~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (501)
....++.+++ .+|+ .++|+|+++.|+.+. ...+..+++++..|.++++ +|+++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998885 7774 467799999999885 4789999999999999985 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHHh
Q 010798 367 VIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFKF 446 (501)
Q Consensus 367 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 446 (501)
+++++++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++.....++.. .++.+++.+++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-
Confidence 999999999999999876 56678899999999999988888887777888888777766665 68899999998877
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 447 NFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 447 ~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+|..|+++++.+++++...+..+...+
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999877766543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.6e-29 Score=245.65 Aligned_cols=386 Identities=16% Similarity=0.134 Sum_probs=332.4
Q ss_pred cCh-HHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 010798 79 LGN-LELAAASLGNSGIQLFAYGLM-LGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLI 155 (501)
Q Consensus 79 ~g~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 155 (501)
+|+ ++..+|.++.++..++...+. .+++++..|..++.. ++|+++.++..++.+.+..+++++++++ .++.+++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 465 446689999999994444444 458999999999998 8899999999999998888888888865 778888887
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhCcc---cchhH
Q 010798 156 LL--GESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAG---LIGAS 230 (501)
Q Consensus 156 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---i~g~~ 230 (501)
.+ +.+++..+.+.++++++++..++..+..++.+++++++|...+....++.++..+....++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 4577888999999999999999999999999999999999999999998887766654444433 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 010798 231 LVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSL 310 (501)
Q Consensus 231 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~ 310 (501)
+|.+++.++..++.+...+|.. .+.+ .+++.+ .+..|++++...|..+.....++...+++.+.+.++++.. +++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~v--s~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFG-FRFR-PKFDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSV--SAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-Cccc-ccCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH--HHH
Confidence 9999999999888877666552 2211 122223 2558999999999999999999999999999999987654 499
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC----cHH
Q 010798 311 SVCMAVSGLLFM-VSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTS----GEV 385 (501)
Q Consensus 311 ~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 385 (501)
+.+.++.+++.. +..+++++..|.+++...++|.++.++..+++++....+.+|.++++..+++++++++.. |.+
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 999999998875 677999999999999999999999999999999999999999999999999999999852 556
Q ss_pred HHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 010798 386 VANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQT 465 (501)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~ 465 (501)
..+....++.+++++.++.++...+...+++.||+|.++..++++ .++++.+.+++.+. +|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999998 57999999888777 899999999999999999
Q ss_pred HHHHHHHHHc
Q 010798 466 IILLWVTIRT 475 (501)
Q Consensus 466 ~~~~~~~~~~ 475 (501)
++.++.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888888775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2.7e-28 Score=237.23 Aligned_cols=419 Identities=15% Similarity=0.096 Sum_probs=351.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch-HHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhcCCCcchH
Q 010798 49 KLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GN-LELAAASLGNSGIQLFAYGLMLG-MGSAVETLCGQAYGAGRYEML 125 (501)
Q Consensus 49 ~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~is~~~~~~~~~~~ 125 (501)
..++|.+.-....++++.+.+++...+++.+ |+ ....++.++..+.+++-..+..| ++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 4677888888899999999999999999995 88 55679999999999666555555 789999999999988878888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC-C--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHH
Q 010798 126 GVYMQRATFVLLATGVPVMMV-YIFCKPMLILLG-E--STAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA 201 (501)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (501)
++..+........+.+.++++ .++.+.+..... . +++....+....+++.+..++.++.....+++++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 877777776777777777766 555555553443 2 234444688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHH
Q 010798 202 YISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAV 281 (501)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~ 281 (501)
+..++.++.-+.....+.........+.+++..++.+.+.++.+..++|.+...+ .++.+++ +..|++++.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~--p~~~~~~-~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIK--PRFGFKD-PGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccC--CCCCCCc-hhHHHHHHHHHHHHH
Confidence 9999999888756555555433347788999999999999999888877632211 1222232 559999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 010798 282 MLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLF-MVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFI 360 (501)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (501)
.....++...+++.+.+.+.++..+ .++.+.++.+++. .+..++++++.|.++++..++|+++.++..+.+++.+.+
T Consensus 244 ~~sisQi~lli~~~iAS~l~~Gsis--~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEGSVS--WLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999765544 9999999999988 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCC----cHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhH
Q 010798 361 ISVVFAVIVLALRHVISYAFTS----GEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGI 436 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (501)
+++|.++++.++++++++++.. ++++.......+..++++.++..+..++...+++.+|+|.|+++++++ .++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHH
Confidence 9999999999999999999743 455577889999999999999999999999999999999999999998 58898
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010798 437 PLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRT 475 (501)
Q Consensus 437 ~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 475 (501)
.++..+... +|..|++.+..++.++...+.++..+|+
T Consensus 401 ~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 401 LLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888666555 8999999999999988888888777764
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=5.8e-27 Score=237.96 Aligned_cols=399 Identities=12% Similarity=0.083 Sum_probs=315.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 010798 48 LKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLG 126 (501)
Q Consensus 48 ~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~ 126 (501)
.++..+-+.+..++++.....+++...+++|+ ||+++|.++.+..+..++......|++++... . +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--H
Confidence 35678889999999999999999999999995 99999999999999996666778888887532 1 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 010798 127 VYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAA 206 (501)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 206 (501)
+..++.+.+..+.++++.++.+...+.+..+.++++. ...+++..+..++..+.......+++.++.+......++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3455666677777777665544434444333334432 345677777778888888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHH
Q 010798 207 TLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLE 286 (501)
Q Consensus 207 ~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~ 286 (501)
..++.....+.+... ++|+.+.+++..+++.+..+....... + +.++ +.+.+ ++..|++++++.|...++...
T Consensus 151 ~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~---~~~~~-~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 151 AVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGR-K-IYRP---ALHFS-LASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhc-c-cCCc---cceec-HHHHHHHHhhhHHHHHHHHHH
Confidence 888877777666554 789999999999998877665432222 2 1111 11112 355899999999999999999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010798 287 TWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFM-VSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVF 365 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (501)
.+...+|+++++.+.. +.++|.|+.+.++.+.+.. +...++++..|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877644 4457899999999987654 5556788999999885 5788999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHH
Q 010798 366 AVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFK 445 (501)
Q Consensus 366 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 445 (501)
++++.+++++++.++.+++ +..+...+++++++.++..+.......+++.||+|..+..+++. .++.+|..+.+...
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh
Confidence 9999999999999988765 67788999999999999999999999999999999999888887 46777777666555
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 446 FNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 446 ~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+|+.|+++++.+++.+......+...|
T Consensus 378 --~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 --AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999988877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=1.1e-24 Score=220.77 Aligned_cols=390 Identities=17% Similarity=0.163 Sum_probs=303.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 010798 46 LELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEM 124 (501)
Q Consensus 46 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 124 (501)
...+++.|.+.....+++.+.+.+++....++|. |++++|.++.+.++..++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 3457888999999999999999999999999995 999999999999999977777779999999999999876555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHH
Q 010798 125 LGVY-MQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYI 203 (501)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (501)
.... ....+....+.+.+......+..+. ++ .....+.+..+..+.........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444433333322222222 11 22334677888889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHH
Q 010798 204 SAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVML 283 (501)
Q Consensus 204 ~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~ 283 (501)
.+.. ..-+...+.+.. .......++..++..........+..++++... +...+. .++.+|+++++++|....+
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLK-RPILRF-SLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCc-hhHHHHHHHHHhhHHHHHH
Confidence 4444 111122222221 244455666666666655555444432211111 111111 3567999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 010798 284 CLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISV 363 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (501)
....+...+|+++++++-. +..+|.|+.++++......+..+++.+..|.+++.+++++.++.++..++..++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887644 445779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHH
Q 010798 364 VFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLG 443 (501)
Q Consensus 364 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 443 (501)
|..+++.++++++..++.+++ +..+...+.+++++.++.++.......+++.|+++..++.+.+. .+.++.+.+++.
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li 382 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI 382 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH
Confidence 999999999999999988865 44488899999999999999999999999999999999999988 478888888887
Q ss_pred HHhcCCchHHHHHH
Q 010798 444 FKFNFGAKGIWSGM 457 (501)
Q Consensus 444 ~~~~~g~~G~~~a~ 457 (501)
+. +|..|+..++
T Consensus 383 ~~--~g~~g~~~a~ 394 (480)
T COG2244 383 PR--FGLIGAAIAT 394 (480)
T ss_pred Hh--hhhhhHHHHH
Confidence 76 7888988888
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.7e-20 Score=186.34 Aligned_cols=208 Identities=20% Similarity=0.254 Sum_probs=197.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPK 345 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 345 (501)
++..|+++++++|..++++.......+|+.++++++ +.++|+-+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456999999999999999999999999999999998 556779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHH
Q 010798 346 AAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAY 425 (501)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 425 (501)
++++..++++..+++++++..++...+++++..++++++++.+.+..|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH-hc-CCchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010798 426 VNIACYYIVGIPLGCLLGFK-FN-FGAKGIWSGMIGGTAMQTIILLWVTIRTD 476 (501)
Q Consensus 426 ~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 476 (501)
+.++. .+.++.+++++.+. .+ +|+.|+++|+++++.+..++..+++.|++
T Consensus 171 ~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 58999999999988 45 89999999999999999999888887755
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=3.4e-20 Score=184.09 Aligned_cols=206 Identities=16% Similarity=0.137 Sum_probs=191.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 010798 267 SGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKA 346 (501)
Q Consensus 267 ~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~ 346 (501)
+..|++++.++|..++++...+...+|+.++++++. +.++|+.+++.++.++...+..+++.+..+.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 458999999999999999999999999999999854 4457799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHH
Q 010798 347 AAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYV 426 (501)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 426 (501)
+++..++++.++++++++..++...+.+++..+++.|+++.+.+.+|+++..++.++..+......++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 427 NIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 427 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+++. .++++++.+++.+..++|+.|+++|+.+++.+..++..+++.|
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 5889999999988778999999999999999988776665554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=4.6e-20 Score=184.91 Aligned_cols=206 Identities=18% Similarity=0.140 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 010798 43 ASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (501)
Q Consensus 43 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 122 (501)
.+.+..|++++.++|.++++++......+|..+++++|++++++++++.++.. +...+..|++++.++.++|++|+||+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 45667899999999999999999999999999999999999999999999999 88889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q 010798 123 EMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGE--ST---AVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSI 196 (501)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (501)
+++++..+.++.++.+.+++..++ +.+.+++.+++.. ++ ++.+.+..|+++.+++.++..++.++.+.+||.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999888865 7788888888853 33 68889999999999999999999999999999999
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHH
Q 010798 197 VLPSAYISAATL-VLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYIL 249 (501)
Q Consensus 197 ~~~~~~~~~~~~-~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~ 249 (501)
++.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..++....++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 99999999999888899999999999999998887765553
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=8.2e-20 Score=183.14 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=189.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPK 345 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 345 (501)
.+.+|++++.++|.+++++...+...+|+.+++++|+ .++|+++++.++..+...+..+++++..+.++|++|++|++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3569999999999999999999999999999999985 55679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhH
Q 010798 346 AAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFT--SGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFV 423 (501)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 423 (501)
++++..+.++.+++.++++.+++...+++++..++. .|+++.+.+..++++..++.++..+.....+++++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 010798 424 AYVNIACYYIVGIPLGCLLGFK----FNFGAKGIWSGMIGGTAMQTIILLWVTI 473 (501)
Q Consensus 424 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 473 (501)
++++++. +++++++.+++.+. +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 68889999888763 3689999999999999998877655554
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=1e-19 Score=183.00 Aligned_cols=207 Identities=15% Similarity=0.100 Sum_probs=190.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPK 345 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 345 (501)
++.+|+++++++|..+++....+...+|..+++++|+. ++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 56799999999999999999999999999999999854 4669999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHH
Q 010798 346 AAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAY 425 (501)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 425 (501)
+.++..+.++.+.+.++++.+++++++++++..+++.|+++.+.+..++++.+++.++..+.....+++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010798 426 VNIACYYIVGIPLGCLLGFK----FNFGAKGIWSGMIGGTAMQTIILLWVTIRT 475 (501)
Q Consensus 426 ~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 475 (501)
.+.+. .++++++.+++.+. +++|+.|+++++.+++.+..++..++.+|+
T Consensus 166 ~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988 47899998888742 458999999999999999998877766554
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=1.4e-19 Score=181.15 Aligned_cols=206 Identities=12% Similarity=0.072 Sum_probs=192.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLL-DNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNP 344 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 344 (501)
++..|++++.++|..++++...+...+|+.+++++ | +.++++++++.++.++...+..+++.+..+.++|++|++|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45689999999999999999999999999999996 6 44567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHH
Q 010798 345 KAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVA 424 (501)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 424 (501)
|++++..++++.++++++++.+++...+++++..+++.|+++.+.+..++++..++.++..+......++++.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 425 YVNIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
..++.. .++++++.+++.+.+++|+.|+++++.+++.+..++..+++.+
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999888 5899999999988778999999999999999998887766654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=5.8e-17 Score=165.47 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
+++..|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++.++....+..+++++..|.+++.++++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34677999999999999999999999999988666799999999999999983334467789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCch
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGE----STAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVL 198 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (501)
+.++.+++++.....++++.+++ ..+.+++..++.+ +++....+..++++.+++.++..+.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998865 7788888887755 557788889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010798 199 PSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMS 251 (501)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (501)
.+++.+....+++++++++++.. +|..|+++|+.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865 6899999999999999988887666554
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.78 E-value=1.1e-15 Score=143.08 Aligned_cols=270 Identities=18% Similarity=0.189 Sum_probs=204.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 010798 52 VRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQ 130 (501)
Q Consensus 52 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 130 (501)
.|.+......++...+.+++-..+++|+ |++++|.++...++.+++......|++++..+.+++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 5778889999999999999999999995 9999999999999999566666999999999999887543 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010798 131 RATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVL 210 (501)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 210 (501)
.......+.+++..+...... ....++ ... .+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444443333322222 333332 211 112222222256778888999999999999999999999988
Q ss_pred HHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010798 211 HLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYF 290 (501)
Q Consensus 211 ~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~ 290 (501)
..+...+++.. +.+..+..++..++..+..++...+.+++.+ .+ ....+++..|++++++.|..+.++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776665 3458889999999998888887766665422 21 222225679999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010798 291 QILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNE 338 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~ 338 (501)
..|.++++.+.+ ..++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888755 44588999999999999999999999999999975
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.76 E-value=4.4e-16 Score=150.84 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010798 278 SSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSI 357 (501)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 357 (501)
|.+++++...+...+++.+++++|+ .++++|+++.++..+...+..+++++..|.++++.|++|+|+.++..+.++.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788999999999999999999985 44669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHH
Q 010798 358 SFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIP 437 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 437 (501)
...++++.+++..++++++..+++.|++..+.+..++++++++.++.++.......+++.||.+.....++++. ++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888888999999999999999999999999999999999999999884 67888
Q ss_pred HHHHHHH-Hhc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 438 LGCLLGF-KFN-FGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 438 ~~~~l~~-~~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+.+++.+ ..+ +|+.|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888776 545 679999999999999988887766654
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=9.9e-18 Score=143.64 Aligned_cols=162 Identities=25% Similarity=0.418 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010798 278 SSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSI 357 (501)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 357 (501)
|.+++++.+.+...+++.+++++|+. ++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88899999999999999999999754 4669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHH
Q 010798 358 SFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIP 437 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 437 (501)
+..++++.++++.++++++..+|++|+++.+.+..++++..++.++..+.....+++++.||++.+++.++...|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 010798 438 LGCL 441 (501)
Q Consensus 438 ~~~~ 441 (501)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=8e-15 Score=145.94 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=188.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEM 124 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 124 (501)
++..|++++...|..++....++...+|+.+.+.+++.++++++.+..+.++....+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45678999999999999999999999999999999999999999999999966667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchh
Q 010798 125 LGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLG----ESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLP 199 (501)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (501)
.++.+++++.....+.++.+++ ..+.+|++..+. -+.+..+.....+++.+++.++..+...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999865 788999987664 36677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010798 200 SAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMS 251 (501)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (501)
++..++++.++|++++.++... +|..|.++|+.++..+..++....++|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877 6999999999999999999888777665
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=4.4e-15 Score=151.09 Aligned_cols=202 Identities=13% Similarity=0.115 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch------H---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GN------L---ELAAA-SLGNSGIQLFAYGLMLGMGSAVETL 112 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~ 112 (501)
+++..|++++.++|.+++++...+...+|+.++++. ++ + .+|.+ +.+.++.. +...+..+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~-~~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLT-FPAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHH-hHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999874 32 2 22333 34555666 5567788999999999
Q ss_pred HHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010798 113 CGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFL 191 (501)
Q Consensus 113 is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 191 (501)
++++.+++|+++.++..++.+.+..+++++.+++ ..+.++++.++..++ .+..+++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865 777888888776443 35678899999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 192 QAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
++.||+|.+++.+++..++|++++++++....+|+.|+++++.+++.+..++..+..+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988873334799999999999999998888766654
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.69 E-value=2.1e-13 Score=133.68 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
+....|++.+...|..++...+++..++|+.+.+.+.+.+.+.+..+..+.++....+..++++...|..|++..++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 34678999999999999999999999999999999999999999999999996666889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCch
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLG----ESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVL 198 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (501)
+.++..+.++.++.+++++.+++ ..+++|+...+. -+++......+.+....++.++..+..++...+.+++|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999965 788999997663 3566677788889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010798 199 PSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMS 251 (501)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (501)
.|+++.+++.++|+.++..+... +|..|.++++.++..+.+.+.++.++|+
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999777766 5778899999999988888877666655
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=2.2e-17 Score=141.52 Aligned_cols=160 Identities=24% Similarity=0.397 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 010798 57 PAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVL 136 (501)
Q Consensus 57 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 136 (501)
|.++++++..+...+|..+++++|++++++++++.++.. +...+..|+++|..+.++|++|++|+++.++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence 889999999999999999999999999999999999999 7888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH-HHHHHH
Q 010798 137 LATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATL-VLHLLL 214 (501)
Q Consensus 137 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 214 (501)
.+++++..++ ..+.+++..+++.++++.+.+.+|+++..++.++..+.....+++++.|+++.++..++... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999976 77888888999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 010798 215 SWL 217 (501)
Q Consensus 215 ~~~ 217 (501)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.65 E-value=7.7e-13 Score=134.65 Aligned_cols=200 Identities=17% Similarity=0.070 Sum_probs=169.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 45 WLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 45 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
.+..|++++++.|...+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...+++...|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 45679999999999999999999999999999996 9999999999999988434445555777788888885 57888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
+.++.+.+.+.+...++++..++ ..+.++++.++.+++ +..+...++++++...+..+.......+++.|++|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998865 677888887776543 566788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 203 ISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
.+++..++.+...+++... +|+.|+++|+.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888887776666544 699999999999999888877665644
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=2.5e-13 Score=134.98 Aligned_cols=201 Identities=8% Similarity=-0.031 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 010798 43 ASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCG-HLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGR 121 (501)
Q Consensus 43 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~ 121 (501)
.+++..|++++.+.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.+++. +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 35677899999999999999999999999999997 579999999999999988455778889999999999995 57
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhH
Q 010798 122 YEMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPS 200 (501)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (501)
+++.++.+++.......++.+..++ .++.++++.++.+++ .+.+.+++++++++.++...+......+.+.++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999888888888765 678888888887654 3346678888888888887777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 201 AYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 201 ~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
....+...++++++++++++. +|..|+++++.+++.+..++......+
T Consensus 364 ~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999987 699999999999999999877655443
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.62 E-value=2.9e-12 Score=118.26 Aligned_cols=246 Identities=18% Similarity=0.174 Sum_probs=174.5
Q ss_pred HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010798 68 MSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMV 146 (501)
Q Consensus 68 ~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (501)
.+++-..+++|. |++++|.++....+..+.......|+.+...+ ..++|+++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888995 99999999999999995555557778777544 233566666666666655544444433332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 010798 147 YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGL 226 (501)
Q Consensus 147 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi 226 (501)
.. .+..++ .+++. ..++....+..+.........+.+++++|.+..........+..+....++... +.+.
T Consensus 78 ~~---~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 AI---LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred HH---HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11 111223 33322 233455667778888889999999999999999999999988885554444443 4588
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHH
Q 010798 227 IGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGL-LDNPEL 305 (501)
Q Consensus 227 ~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (501)
.+..++..++..+..++.....+ + +.+.. .+ .+..| .++.+.|....++........+.++++. +| ..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~ 217 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR-R-KLRLS-----FK-FSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-c-ccCCC-----ch-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HH
Confidence 88888888888877766554222 1 11111 11 22234 7999999999999999999999999988 65 44
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 010798 306 ALDSLSVCMAVSGLLF-MVSVGFNAAASVRVSNE 338 (501)
Q Consensus 306 a~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~ 338 (501)
++|.|+++.++...+. .+..++++...|.++|.
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5679999999999888 89999999999999863
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.55 E-value=2.3e-12 Score=130.81 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 122 (501)
..+..|++++.++|..+..+...+.+.+|+.+++++ |++++|.|+.+..+.. ....+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 367889999999999999999999999999999996 9999999998888888 88888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHH
Q 010798 123 EMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA 201 (501)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (501)
++.++..++.+.+...++++..++ ..+.+|++..+.+++. ..+...+.++++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999976 7778888877766543 2266778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchhHHHH
Q 010798 202 YISAATLVLHLLLSWLVVYKFGAGLIGASLVL 233 (501)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~ 233 (501)
....++.++|++++.+++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999987 5888888888
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.37 E-value=4.6e-09 Score=105.50 Aligned_cols=420 Identities=11% Similarity=0.010 Sum_probs=247.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHH
Q 010798 53 RLAAPAVFVYLINNLMSLSTRVFCGH-LGNLELAAASLGNSGIQ-LFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQ 130 (501)
Q Consensus 53 ~~~~p~~~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~-~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 130 (501)
+.+.-+++.+++..+.+++-+.++-| ++|+.+|..++=..+.. .+....--++-.|..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45667788888998888877776666 59999998855444443 23334455676665443333211122223333222
Q ss_pred HHHHHHHHHHHHHHHH-H-HhhHHH----HHHcCCC-HH---HHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHcCC
Q 010798 131 RATFVLLATGVPVMMV-Y-IFCKPM----LILLGES-TA---VASAAALFVYGLIPQIFAYAVNF----PIQKFLQAQSI 196 (501)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~-~~~~~i----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~ 196 (501)
....+..+++++.+.+ + +...|. ..+...+ ++ ..+.....+.+...+.+.-.+.. ..+..+.-..+
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 3333333333322222 1 111111 1111111 11 11112222333333444333333 33444444455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-hCcccc------hhHHHHHHHHHHHHHHHHHHHHh-c-cc---ccccccCCChH
Q 010798 197 VLPSAYISAATLVLHLLLSWLVVYK-FGAGLI------GASLVLSLSWYIIVGAQFAYILM-S-DK---CKHTWTGFSVQ 264 (501)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~li~~-~~~gi~------g~~~a~~i~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~ 264 (501)
.+.-........+++.......... .+++.. -+.++..++++...+........ . .. .+...++....
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 5555555555555554443333221 111111 12345555555444332221111 1 11 11111222221
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 010798 265 ---AFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGL--LDNPELALDSLSVCMAVSGLL-FMVSVGFNAAASVRVSNE 338 (501)
Q Consensus 265 ---~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~a~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~~ 338 (501)
....-+++++........++.-.+....+.+++.. +.+ ....|.|++++++.++. -.+...+-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 11124788899999999999999999999988887 555 33357999999998865 456778888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhH
Q 010798 339 LGAGNP---------KAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPV 409 (501)
Q Consensus 339 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 409 (501)
..+++. ++..+.+...++....+++.+..+-...++.+..++.++.=....+...+++++...++.+++++
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 766533 44666778888888888888777777888888888765332223357789999999999999999
Q ss_pred hhhhhhccCcchhHHHHHHHHH--HHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 410 LSGVAVGCGWQAFVAYVNIACY--YIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 410 ~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
...+.++....+.....+..-. .++.+..++++... ++|..|..+|..+.+.++.+....+++|
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887765543332211 24556667777665 6899999999999999999988877766
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=9.1e-08 Score=89.85 Aligned_cols=412 Identities=12% Similarity=0.055 Sum_probs=236.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH-HhhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhcCCC---c
Q 010798 48 LKLLVRLAAPAVFVYLINNLMSLSTRV-FCGHLGNLELAAASLGNSGIQ-LFAYGLMLGMGSAVETLCGQAYGAGR---Y 122 (501)
Q Consensus 48 ~~~i~~~~~p~~~~~~~~~~~~~~~~~-~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~gl~~~~~~~is~~~~~~~---~ 122 (501)
...-.+.+...+..+++..+.+++-+. .+.+++++.+|..++-..+.+ .+....--++.-| ....|..+ .
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADTW 81 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCccH
Confidence 344556666777777777777775554 444469999999987766666 1111122233333 33333222 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhH
Q 010798 123 EMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAV--ASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPS 200 (501)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (501)
++..+..+.+-.++.++.+...-++ +.+....++. .+.-..-..+...+.+.-.+...+.-..|...+.+.-
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFW------LGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHH------HHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2333333333333333333332211 1111111111 1111112233333444444444444455555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHHHHHHHHHHHHhccc-ccc---------cccCCChH--hh
Q 010798 201 AYISAATLVLHLLLSWLVVYKF--GAGLIGASLVLSLSWYIIVGAQFAYILMSDK-CKH---------TWTGFSVQ--AF 266 (501)
Q Consensus 201 ~~~~~~~~~~~i~~~~~li~~~--~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~--~~ 266 (501)
.+...+..++.....+..+... .+++.-.|+|.........+.+.+++.+.++ .+. ..++.... ..
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 6677777776644444444332 1344444444444443333323333332222 000 01111111 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCC
Q 010798 267 SGICEFLKLSGSSAVMLCLETWYFQILVLIAGLL---DNPELALDSLSVCMAVSGLL-FMVSVGFNAAASVRVSNELGAG 342 (501)
Q Consensus 267 ~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~a~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~~~~~~ 342 (501)
..-++..+.........+.-.+....+..+.+.. .-++.+ .|.++++..++. -++...+-.......++....+
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Qg--vYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~ 313 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQG--VYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRD 313 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhh--HHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhcc
Confidence 1124556666666677777777777776666633 223444 999998887754 4567778888888888887777
Q ss_pred ChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCc
Q 010798 343 NPKAAAF---SVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGW 419 (501)
Q Consensus 343 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 419 (501)
+.|+.++ .+...++....+++...++-...++.+..++++++=....+...+++++...++.+++++..++..+.+.
T Consensus 314 ~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t 393 (530)
T KOG2864|consen 314 NQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVAT 393 (530)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 6665554 5667777777777777777777778888888764322223557899999999999999999999999887
Q ss_pred chhHHHHH---HHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010798 420 QAFVAYVN---IACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIRT 475 (501)
Q Consensus 420 ~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 475 (501)
.+.....+ .+. .++.+.+++++... +|..|..+|..+.+.++.+.....+++.
T Consensus 394 ~~qi~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 394 SRQIDKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553222 222 35667788888777 7889999999999999888776666653
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.19 E-value=2.3e-09 Score=106.27 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=186.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGL-LFMVSVGFNAAASVRVSNELGAGNP 344 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~~~~~~ 344 (501)
....|++.+++.|..+....+.....++..+++++|+.+.+ +.+++....+. .+.+..++..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLa--a~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELA--SVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHH--HHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 46789999999999999999999999999999999986655 88898888876 5668899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHH
Q 010798 345 KAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVA 424 (501)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 424 (501)
+......+++........++.+. ++.+.+++...+..|+++...+..+.++.....+...........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999988888775 45556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 425 YVNIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
++.... ..+++++.+++.+.+++|..|++++..+++.+.......+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 999888 6899999999999999999999999999999988877766654
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.08 E-value=1.1e-06 Score=79.35 Aligned_cols=317 Identities=13% Similarity=0.068 Sum_probs=188.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 010798 46 LELKLLVRLAAPAVFVYLINNLMSLSTRVFCGH-L-GN-LELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (501)
Q Consensus 46 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~-~-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 122 (501)
.+++++.++-.|+.++++...+...+-+.-++| - .+ +.+++|+++..+.- +...+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHHHHHHh-----cchh
Confidence 467899999999999999999998888888887 3 33 55999999999999 77777777776655555 2222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchh
Q 010798 123 EMLGVYMQRATFVLLATGVPVMMV-YI-FCKPML-ILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLP 199 (501)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (501)
++ ++...-....+.+.+.+..++ +- +...++ ..++.++++.+.+...+.++.+..++.++....++++-=++++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 222222222222222222222 22 222233 566889999999999999999999999999999998886667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hC--cccchhHHHHHHHHHHHHHH-HHHHHHhcccccccccCCChHhhhhHHHHHHH
Q 010798 200 SAYISAATLVLHLLLSWLVVYK-FG--AGLIGASLVLSLSWYIIVGA-QFAYILMSDKCKHTWTGFSVQAFSGICEFLKL 275 (501)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~li~~-~~--~gi~g~~~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 275 (501)
....++...+..++...+++.. ++ -+..-..++...+..+.+-+ .+-++..-+...+...+...+....+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 6665555555555544444432 11 11111112222222222221 11122111121222222223333558999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH-----
Q 010798 276 SGSSAVMLCLETWYFQILVLIAGL-LDNP---ELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKA----- 346 (501)
Q Consensus 276 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~----- 346 (501)
.+|.+.....+.....+.+.++++ ++.. ..|+|...+.+...-..+...+-+ .+..|..-++--+++..+
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~v 319 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNPV 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCch
Confidence 999999999999999999988888 5543 245566555555544444433332 233444322211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 347 AAFSVVVVTSISFIISVVFAVIVL 370 (501)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~ 370 (501)
.+..+++.....+.+++.+++.++
T Consensus 320 ~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 320 TQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233677777777777777766554
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.53 E-value=1.5e-05 Score=80.56 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=159.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc---
Q 010798 49 KLLVRLAAPAVFVYLINNLMSLSTRVFCGH--L-GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY--- 122 (501)
Q Consensus 49 ~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~--~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~--- 122 (501)
++.++.+.......+...+.+--|.+++.. + ..++.|.|+++.++-++..-.++..+--+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678888999999999999999999999999 6 8899999999999999777777878888877788877765433
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 010798 123 ------EMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQS 195 (501)
Q Consensus 123 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 195 (501)
++..+.+...+.+...+++++..+ ....+.++.++.++.-..+.+...+++.+..+++.+++++..++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 335566777777777777777654 5566666777654433334456778899999999999999999999977
Q ss_pred CchhHHH---HHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 010798 196 IVLPSAY---ISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMS 251 (501)
Q Consensus 196 ~~~~~~~---~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (501)
..+.... ...+..++.+..+++++.. ++|..|..+|+++...+..+....+..+.
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 4444566677788888876 78999999999999999999887777654
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.42 E-value=4.7e-05 Score=63.53 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=72.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 171 VYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
+++++++.++..+.....+.+++.||++..+..+.++.++|+++++++++. +|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999876 799999999999999998888777665
Q ss_pred c
Q 010798 251 S 251 (501)
Q Consensus 251 ~ 251 (501)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.18 E-value=0.0058 Score=56.84 Aligned_cols=321 Identities=12% Similarity=0.026 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 010798 97 FAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIP 176 (501)
Q Consensus 97 ~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 176 (501)
+...+..|+....++.+|...=++|.+++..-+.....+....+..+....++ ..++...... ...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~-------~~~~~si~yk-----~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF-------VNNQYSIVYK-----ILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh-------hcCchhHHHH-----HHHHH
Confidence 34456778888899999998888888877665555555554444444422111 1112211111 12233
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010798 177 QIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKH 256 (501)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 256 (501)
.....+..=+...++.+.++.+.....-.++.++...+..++-. .++.|..++..++..+...+...+..|.-+-+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~- 215 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-
Confidence 33444444455667888899888888888888888887776665 48999999999999888777766666541111
Q ss_pred cccCCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH------HHHHHHHHHHHHHHHHHH-----
Q 010798 257 TWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELAL------DSLSVCMAVSGLLFMVSV----- 325 (501)
Q Consensus 257 ~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------a~~~~~~~i~~~~~~~~~----- 325 (501)
+...++.-. ..+ --....+-.+.-.++..+|+.+.=..++++.-. ..|-+.--.+.....|..
T Consensus 216 ~~i~FdFL~--~~~----~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 216 RRIGFDFLL--YRR----KYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred cccceehhh--hhh----cchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 111111111 111 112233344445555555554433222111110 122232222222222222
Q ss_pred HHHHHHHHHHHHhh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHh
Q 010798 326 GFNAAASVRVSNEL----GA-------GNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELC 394 (501)
Q Consensus 326 ~l~~~~~p~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 394 (501)
.+.+...+..-+.+ +. ++.++.....++.+.-..-+-...++.+++.++.+...++-|+. ..+..
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHH
Confidence 22233333322222 11 22344445566666666777778888899999999888876543 34445
Q ss_pred HHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHH
Q 010798 395 PLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGF 444 (501)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 444 (501)
.+-.++...+.....+-.+..-..+-+..+..+..- .+.+-.+.++...
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~ 414 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH
Confidence 555566555555555555555666666666555554 4556556665544
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.002 Score=61.44 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=142.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchH-
Q 010798 50 LLVRLAAPAVFVYLINNLMSLSTRVFCGHL---GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEML- 125 (501)
Q Consensus 50 ~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~---g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~- 125 (501)
+..+.........++-.+.+--|.++++-. +-++.|.|.+..++-++..-.+...+.-..-...+|...++++|+.
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 444555555666777788888888988853 5567888888877777666667777777777777777666655554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHH-
Q 010798 126 --GVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA- 201 (501)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 201 (501)
-++....+.+...++++.+.. ...+.+.+.+.+++.-....+...+++.+..+++.+++++..+++.+....+..-
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 445666677777777666543 5566667777766544444455779999999999999999999999877555443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 202 --YISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 202 --~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
....+..+..++.+++++.. +|..|..+|+++...+..+....+.++
T Consensus 400 ~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred cccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888999887 467999999999998887777655544
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.08 E-value=0.0013 Score=61.12 Aligned_cols=185 Identities=22% Similarity=0.220 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 010798 275 LSGSSAVMLCLETWYFQILV-LIAGLLDNPELALDSLSVCMAVSGLLFMV-SVGFNAAASVRVSNELGAGNPKAAAFSVV 352 (501)
Q Consensus 275 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~a~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 352 (501)
-+......+........+.. ++...+|+++ .|.|+....+.++...+ ..|+.++..-..++..++ .+..++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~--~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPEE--YGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 33444455555555555544 4555556544 55999999998887775 678888887777765432 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHH
Q 010798 353 VVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYY 432 (501)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 432 (501)
.......+..+.......... .+..++ ... .+........++.........++++.++.+......+...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444333333332222222222 333332 111 1122222222577788888999999999999888887775
Q ss_pred HHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 433 IVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 433 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
+..+.+...+.... .+..+...+..++.++..++.....+|
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFLG-SSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443332 348899999999998887777766664
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.02 E-value=0.004 Score=56.86 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010798 266 FSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLL-DNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNP 344 (501)
Q Consensus 266 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 344 (501)
...+++++++.+|..+++....+.-++.+.-+++- .+....+|+|+++..+.-++..+...+.+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 35588999999999999999999988888767653 3333557899999999999999888888776666532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-hhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccC
Q 010798 345 KAAAFSVVVVTSISFIISVVFAVI-----VLALRH-VISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCG 418 (501)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 418 (501)
++ +++.......+...+++ .-.++. .+..++.-|+++.+.+...+.++....+++++....++++.=.+
T Consensus 82 sr-----r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 SR-----RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 22 22222222333332222 112222 34556677899999999999999999999999999999887445
Q ss_pred cchhHHHHHHHH
Q 010798 419 WQAFVAYVNIAC 430 (501)
Q Consensus 419 ~~~~~~~~~~~~ 430 (501)
++......++..
T Consensus 157 ~s~iV~~aSI~~ 168 (345)
T PF07260_consen 157 HSWIVGSASIAD 168 (345)
T ss_pred ceeEeehHHHHH
Confidence 555554444443
No 44
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.00 E-value=4.5e-05 Score=63.60 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 010798 394 CPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTI 473 (501)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 473 (501)
+++++++.++.++.....+.+++.||+|..+..+... .++++++.+++.+. +|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999988 68999999999655 89999999999999999998888887
Q ss_pred Hc
Q 010798 474 RT 475 (501)
Q Consensus 474 ~~ 475 (501)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 73
No 45
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.75 E-value=0.014 Score=53.40 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=103.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 293 LVLIAGLLDNPELALDSLSVCMAVSGLLFMV-SVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLA 371 (501)
Q Consensus 293 ~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (501)
...+...+|.++ .|.|+....+..+...+ ..++.+...- ..++++++.++..+.......+.++...++...
T Consensus 8 ~~~lar~l~~~~--~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 8 LILLARYLGPED--FGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHCCHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667554 45999999988877775 3444443322 233566677777666666555555444433333
Q ss_pred hhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHHhcCCch
Q 010798 372 LRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFKFNFGAK 451 (501)
Q Consensus 372 ~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 451 (501)
... .+ ++++ ...++.+..+..++..........+++.+|.+........... ..+.+...+.... .+..
T Consensus 81 ~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 149 (251)
T PF13440_consen 81 IAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLLYLG-LNLW 149 (251)
T ss_pred HHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhHH
Confidence 222 33 3332 2344566777778888899999999999999999988888753 3333333333322 3788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010798 452 GIWSGMIGGTAMQTIILLWVTI 473 (501)
Q Consensus 452 G~~~a~~~~~~i~~~~~~~~~~ 473 (501)
+..++..++.++..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8899988988887766555433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=74.08 E-value=87 Score=30.22 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHH
Q 010798 323 VSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLL 402 (501)
Q Consensus 323 ~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~ 402 (501)
++.+++....-.++...=+++.+++...+.-.+.+....+..++...... .++ ..... =...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~---~si~y--k~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQ---YSIVY--KILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCc---hhHHH--HHHHHHHHH
Confidence 45666667777777777667777777766666666555555544321111 121 11121 223344555
Q ss_pred HhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 403 LNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 403 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
..+...+....+.+.+|.+.....-.+. ......++.++-.. +..|..++..++..+..++....+.|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666777788889999888887766666 45666666666544 88999999999998877776665555
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=65.43 E-value=1.4e+02 Score=29.25 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010798 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISY 378 (501)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (501)
+.++.+++.+++.+.+........++.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999999998888887776666655
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=52.76 E-value=88 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010798 326 GFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVV 364 (501)
Q Consensus 326 ~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (501)
-++......+.+.+.+||.+++++.-+++.+++.+-.+.
T Consensus 35 i~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 35 IVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 334445566778888999999999999988887554433
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=49.24 E-value=2.7e+02 Score=27.31 Aligned_cols=24 Identities=8% Similarity=-0.248 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 010798 342 GNPKAAAFSVVVVTSISFIISVVF 365 (501)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~ 365 (501)
-|.+++.|.-++.+...++-++..
T Consensus 72 ~Dlr~i~~~g~~~l~~F~~~~~g~ 95 (378)
T PF05684_consen 72 ADLRRILRLGGRLLLAFLIGAVGT 95 (378)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHH
Confidence 355666665555444444443333
No 50
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=46.86 E-value=2.4e+02 Score=26.05 Aligned_cols=35 Identities=3% Similarity=-0.147 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 010798 318 GLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVV 352 (501)
Q Consensus 318 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 352 (501)
+....+...++....+..-+...++|.++.++...
T Consensus 108 ~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 108 QYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 33444555667777777777888888888876544
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=41.91 E-value=2.8e+02 Score=25.52 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 010798 317 SGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVV 352 (501)
Q Consensus 317 ~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 352 (501)
.+....+...++....+..=+..+++|.++.++...
T Consensus 106 g~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 106 GQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334445556666777777777888888888866543
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.15 E-value=1.3e+02 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 010798 121 RYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGE 159 (501)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 159 (501)
++++..+.+..++...+.+-.+.+++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 455555566666665555555555556666777776663
No 53
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=37.92 E-value=57 Score=24.09 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.2
Q ss_pred HHHcChH
Q 010798 472 TIRTDWK 478 (501)
Q Consensus 472 ~~~~~~~ 478 (501)
..++.|+
T Consensus 33 i~~~IW~ 39 (121)
T PF10669_consen 33 ITKSIWH 39 (121)
T ss_pred HHHHHhh
Confidence 3344554
No 54
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=36.14 E-value=2e+02 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 225 GLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 225 gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
++.|...++.+.+++.+++...+..+
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 45566777888888877776666554
No 55
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=35.94 E-value=4.4e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHhhc--c-ChHHHHHHHHHHHH
Q 010798 42 IASWLELKLLVRLAAPAVFVYLINNLM--SLSTRVFCGH--L-GNLELAAASLGNSG 93 (501)
Q Consensus 42 ~~~~~~~~~i~~~~~p~~~~~~~~~~~--~~~~~~~i~~--~-g~~~~~~~~~~~~~ 93 (501)
+.+.+..|.++++.+|+.+..+.+... +..++..--. . -.+.+..|+..+++
T Consensus 236 ~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~ 292 (402)
T PF02487_consen 236 KEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQL 292 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 334556788888999999988888765 3344443222 2 23556666655543
No 56
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=35.73 E-value=32 Score=22.83 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcChH
Q 010798 454 WSGMIGGTAMQTIILLWVTIRTDWK 478 (501)
Q Consensus 454 ~~a~~~~~~i~~~~~~~~~~~~~~~ 478 (501)
.+..+++.++..+..+-+.-+-++.
T Consensus 8 IIviVlgvIigNia~LK~sAk~K~~ 32 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSAKMKFP 32 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCCC
Confidence 3444555555555554444443333
No 57
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=34.03 E-value=2.1e+02 Score=27.88 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010798 354 VTSISFIISVVFAVI 368 (501)
Q Consensus 354 ~~~~~~~~~~~~~~~ 368 (501)
.-++.+.+.+|..++
T Consensus 33 ls~lv~~~~lP~liF 47 (385)
T PF03547_consen 33 LSKLVFNVFLPALIF 47 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444454554433
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.52 E-value=1.6e+02 Score=27.85 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHHHHh-------cCC-chHHHHHHHHHHHHHHHHHHHHHHHcCh
Q 010798 419 WQAFVAYVNIACYYIVGIPLGCLLGFKF-------NFG-AKGIWSGMIGGTAMQTIILLWVTIRTDW 477 (501)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~-------~~g-~~G~~~a~~~~~~i~~~~~~~~~~~~~~ 477 (501)
..+..-..++++ ++.+|..++.+.+. ... -.|. +...+..++.++..+++++|++|
T Consensus 254 ~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy-~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 254 MNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGY-PAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444455555 46667777665541 111 1233 33333344445566778888888
No 59
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=31.08 E-value=4.6e+02 Score=24.78 Aligned_cols=11 Identities=18% Similarity=-0.015 Sum_probs=4.7
Q ss_pred HHHHHHHHhhc
Q 010798 330 AASVRVSNELG 340 (501)
Q Consensus 330 ~~~p~~~~~~~ 340 (501)
.....+++.+|
T Consensus 48 ~~~g~l~dr~g 58 (379)
T TIGR00881 48 FVMGSVSDRSN 58 (379)
T ss_pred hhhhHHHHhhC
Confidence 33344444444
No 60
>PRK09546 zntB zinc transporter; Reviewed
Probab=31.07 E-value=1.7e+02 Score=27.91 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh-cCC-c------hHHHHHHHHHHHHHHHHHHHHHHHcCh
Q 010798 425 YVNIACYYIVGIPLGCLLGFKF-NFG-A------KGIWSGMIGGTAMQTIILLWVTIRTDW 477 (501)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~~-~~g-~------~G~~~a~~~~~~i~~~~~~~~~~~~~~ 477 (501)
..++++ .+.+|+.++.+.+. +++ + .|-+ ...+..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~-~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFS-IFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 344454 35568777766541 111 1 2333 3333344445556677888877
No 61
>PRK01637 hypothetical protein; Reviewed
Probab=30.79 E-value=4.4e+02 Score=24.50 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=3.9
Q ss_pred HHHHhhcCC
Q 010798 334 RVSNELGAG 342 (501)
Q Consensus 334 ~~~~~~~~~ 342 (501)
-+.+.++.+
T Consensus 115 a~N~i~~~~ 123 (286)
T PRK01637 115 ALNTIWRSK 123 (286)
T ss_pred HHHHHhCCC
Confidence 334445444
No 62
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=30.71 E-value=2.1e+02 Score=20.77 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 010798 449 GAKGIWSGMIGGTAMQTIILLWVTIR 474 (501)
Q Consensus 449 g~~G~~~a~~~~~~i~~~~~~~~~~~ 474 (501)
|.....+...+..++-.++.-+++.+
T Consensus 22 ~~s~li~~~LilfviF~~~L~~yy~k 47 (83)
T PF05814_consen 22 GFSELIITLLILFVIFFCVLQVYYIK 47 (83)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555555544444444444
No 63
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.78 E-value=1.1e+02 Score=22.24 Aligned_cols=15 Identities=0% Similarity=0.155 Sum_probs=1.3
Q ss_pred HHHHHHcChHHHHHH
Q 010798 469 LWVTIRTDWKKEVEK 483 (501)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (501)
+..++|.+.++++++
T Consensus 27 ~ieYrk~~rqrkId~ 41 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDR 41 (81)
T ss_dssp ------------CHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 334444444444444
No 64
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=26.80 E-value=1e+03 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 010798 183 VNFPIQKFLQAQSIVLPSAYISAATLVLHLLLS 215 (501)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 215 (501)
....+...+...++.+...+.+....+..++..
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 344455566666666666666666555444433
No 65
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=26.67 E-value=6.7e+02 Score=25.26 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010798 43 ASWLELKLLVRLAAPAVFVYLINNLMSLS 71 (501)
Q Consensus 43 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~ 71 (501)
.+...+|.++|-++|..+..++..+-...
T Consensus 11 ld~~~~k~~~k~~i~~~i~~~l~~i~~~~ 39 (459)
T PF10337_consen 11 LDRRSLKIMFKCWIAPWIALILCQIPPVA 39 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 36778899999999998888876554443
No 66
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=26.25 E-value=5e+02 Score=23.65 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=8.3
Q ss_pred hHHHHHHhhhcCCCcch
Q 010798 108 AVETLCGQAYGAGRYEM 124 (501)
Q Consensus 108 ~~~~~is~~~~~~~~~~ 124 (501)
+...-..+.++.++.+.
T Consensus 102 ~l~~~ln~i~~~~~~r~ 118 (259)
T TIGR00765 102 NIDSTLNKIWRVKPRRS 118 (259)
T ss_pred HHHHHHHHHhCCCCCCc
Confidence 33444555566554433
No 67
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.71 E-value=5.8e+02 Score=24.22 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHh-cCC-------chHHHHHHHHHHHHHHHHHHHHHHHcCh
Q 010798 420 QAFVAYVNIACYYIVGIPLGCLLGFKF-NFG-------AKGIWSGMIGGTAMQTIILLWVTIRTDW 477 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~g-------~~G~~~a~~~~~~i~~~~~~~~~~~~~~ 477 (501)
....-..++++ ++.+|..++.+.+. +++ -.|.|++..+.- +.+++.+++++|++|
T Consensus 259 N~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~-~~~~~~~~~frrk~W 321 (322)
T COG0598 259 NEIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILML-LLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 33444445554 46667777666541 111 125555554444 445566778888887
No 68
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.68 E-value=7.1e+02 Score=25.21 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHH--HHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 010798 390 VSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACY--YIVGIPLGCLLGFKFNFGAKGIWSGMIGGTAMQTII 467 (501)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~ 467 (501)
..+.++-++.+..+-+...+.....--..+.+.....+...+ -++..|++-.+... .+|-..+.+...+.-++-.++
T Consensus 133 ~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~ 211 (466)
T KOG2532|consen 133 VLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFIL 211 (466)
T ss_pred HHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHH
Confidence 445555556666666666666666555566665554444332 23444444333332 368888887777776665555
Q ss_pred HHHHHH
Q 010798 468 LLWVTI 473 (501)
Q Consensus 468 ~~~~~~ 473 (501)
.++.+.
T Consensus 212 w~~~~~ 217 (466)
T KOG2532|consen 212 WFLFYS 217 (466)
T ss_pred HHHHhc
Confidence 444443
No 69
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.06 E-value=1.9e+02 Score=18.27 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 010798 453 IWSGMIGGTAMQT 465 (501)
Q Consensus 453 ~~~a~~~~~~i~~ 465 (501)
+|.++.++.++..
T Consensus 7 VW~sYg~t~~~l~ 19 (46)
T PF04995_consen 7 VWSSYGVTALVLA 19 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 70
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.13 E-value=2.8e+02 Score=26.40 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHh-cCC-c------hHHHHHHHHHHHHHHHHHHHHHHHcCh
Q 010798 420 QAFVAYVNIACYYIVGIPLGCLLGFKF-NFG-A------KGIWSGMIGGTAMQTIILLWVTIRTDW 477 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~g-~------~G~~~a~~~~~~i~~~~~~~~~~~~~~ 477 (501)
....-..++++ ++.+|..++.+.+. ++. + .|.+++ ....++.++..+++++|++|
T Consensus 253 N~~mk~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~~-l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 253 NRIIKIFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPGA-IILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHccc
Confidence 34444445554 45666666655441 111 1 233333 33334445556778888887
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.97 E-value=1.1e+02 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 010798 452 GIWSGMIGGTAMQTIILLWVTIRTD 476 (501)
Q Consensus 452 G~~~a~~~~~~i~~~~~~~~~~~~~ 476 (501)
|+.++..++-+...++..++++|.+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443333333444444433
No 72
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.35 E-value=3e+02 Score=20.01 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 010798 110 ETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPV 143 (501)
Q Consensus 110 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (501)
+..+-..+.+||.+.+++.-+++..++.+..++.
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3566777788999999998888888875444443
No 73
>PF14184 YrvL: Regulatory protein YrvL
Probab=22.92 E-value=4.1e+02 Score=21.46 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010798 130 QRATFVLLATGVPVMMVYIFCKPMLILLGEST-AVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATL 208 (501)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 208 (501)
.......+.+.++.+...+....+++++|.+= .......-.+....++.++..+...+...+.-.+-++. .......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~--~~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRR--LFILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchH--HHHHHHH
Confidence 33444444444444455556667778887542 22333333444555667777666666665555533332 2334445
Q ss_pred HHHHHHHHHHHHHhCcccchhHH
Q 010798 209 VLHLLLSWLVVYKFGAGLIGASL 231 (501)
Q Consensus 209 ~~~i~~~~~li~~~~~gi~g~~~ 231 (501)
.+....++..++.-+.=+.++.+
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceee
Confidence 67777777777764433333333
No 74
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.91 E-value=5.1e+02 Score=22.60 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhH
Q 010798 332 SVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSEL 393 (501)
Q Consensus 332 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 393 (501)
.|.+-...+..+.++.++..++....+..+ .+++.++++.+.+.|+-+-+....+...
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLV----MLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355555555566777777777665555544 5567788999999998765555555443
No 75
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.59 E-value=4.6e+02 Score=22.94 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHhcCC
Q 010798 432 YIVGIPLGCLLGFKFNFG 449 (501)
Q Consensus 432 ~~~~i~~~~~l~~~~~~g 449 (501)
.+..+.+++++..++.+-
T Consensus 51 Al~~l~~S~iy~~~~~y~ 68 (251)
T COG5415 51 ALTVLALSYIYWEYHGYR 68 (251)
T ss_pred HHHHHHHHHHHhhccccc
Confidence 344444556655444333
No 76
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=22.38 E-value=8.1e+02 Score=24.69 Aligned_cols=50 Identities=6% Similarity=-0.075 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHH----HHHHHHHHHHHH
Q 010798 312 VCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAF----SVVVVTSISFII 361 (501)
Q Consensus 312 ~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 361 (501)
....++.+.+.....+.-.+.|..-..+.+++.+..+| ..+..+.+..+.
T Consensus 76 ~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~ 129 (471)
T PF04791_consen 76 LMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIF 129 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHH
Confidence 34445677777777778889999999998888764444 444444444433
No 77
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.08 E-value=8.5e+02 Score=24.83 Aligned_cols=256 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCChhhhhhccchhhhccCcchhhhhhhcCCccchhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Q 010798 1 MESPVEAAQYQPIIESEATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLG 80 (501)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g 80 (501)
.++..++|+..=..=...++++.+.++..++.+.+...+.......+..+--+.-.|..+...+.....+.....+..++
T Consensus 214 ~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys 293 (485)
T KOG0569|consen 214 KKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYS 293 (485)
T ss_pred HcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCC
Q 010798 81 NLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGES 160 (501)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 160 (501)
++-+-..++...-.. ..-...|+-+-..+.++-..- |+-..|.+.-.+...+.+..++..+........- .-
T Consensus 294 t~i~~~aG~~~~~a~--~an~~~g~v~~~~t~~~~~li--d~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~----~~ 365 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQ--YANLGIGIVNLLSTLVSPFLI--DRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG----SW 365 (485)
T ss_pred HHHHHHcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHH
Q 010798 161 TAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQS-IVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYI 239 (501)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~li~~~~~gi~g~~~a~~i~~~~ 239 (501)
......+...+....++.-...+...+.+=+-.++ |..............|.+....+... ....|. ...+-..+
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l--~~~~g~--~~filF~i 441 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL--QNVIGP--YVFILFVI 441 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc--hhhHHHHH
Q ss_pred HHHHHHHHHHhcccccccccCCChHhhhhHHHHHH
Q 010798 240 IVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLK 274 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 274 (501)
...+...+.+++ .+.-+-++..++.+.++
T Consensus 442 ~~~~~~i~~~~~------lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 442 PLAIFLIYLYRY------LPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHh------CcccCCCCHHHHHHHHH
No 78
>PRK10913 dipeptide transporter; Provisional
Probab=20.74 E-value=7.1e+02 Score=23.38 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010798 269 ICEFLKLSGSSAVMLCLET 287 (501)
Q Consensus 269 ~~~il~~~~p~~~~~~~~~ 287 (501)
.|.++....|..+..+...
T Consensus 208 ~rhilPn~~~~ii~~~~~~ 226 (300)
T PRK10913 208 FINILPNCLAPLIVQASLG 226 (300)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4455555555444444333
No 79
>PRK11677 hypothetical protein; Provisional
Probab=20.38 E-value=2.1e+02 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhhhccc
Q 010798 479 KEVEKAKMRLDKWEDKQQ 496 (501)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ 496 (501)
+.+++.+.+.++.+.+..
T Consensus 36 ~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 36 YELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555554444433
No 80
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.38 E-value=7.7e+02 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010798 344 PKAAAFSVVVVTSISFIISVVFAVIVLAL 372 (501)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (501)
.++..+..++-++......+|......+.
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666666655544443
No 81
>PRK08156 type III secretion system protein SpaS; Validated
Probab=20.05 E-value=8.1e+02 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=16.4
Q ss_pred HHHHHcChHHHHHHHHHHhhhhhhccc
Q 010798 470 WVTIRTDWKKEVEKAKMRLDKWEDKQQ 496 (501)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (501)
+.+.|..|.+++++.+++.++|-.+.+
T Consensus 197 ~~~Qr~~~~k~lkMSkqEvKdE~Ke~E 223 (361)
T PRK08156 197 FIAEYFLHMKDMKMDKQEVKREYKEQE 223 (361)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhcc
Confidence 445566677777766665555555544
Done!