Query 010798
Match_columns 501
No_of_seqs 261 out of 2171
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5.5E-48 1.9E-52 388.5 37.2 431 43-476 6-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.6E-19 8.8E-24 179.5 18.9 206 44-250 233-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 79.1 44 0.0015 31.6 38.2 20 448-467 410-429 (451)
4 3o7q_A L-fucose-proton symport 39.9 2.3E+02 0.0079 26.2 33.6 38 55-92 32-71 (438)
5 2knc_B Integrin beta-3; transm 29.3 1.4E+02 0.0047 20.6 5.5 18 450-467 10-27 (79)
6 4aps_A DI-OR tripeptide H+ sym 28.5 3.8E+02 0.013 25.3 29.6 18 448-465 448-465 (491)
7 2k1k_A Ephrin type-A receptor 19.6 1E+02 0.0036 17.8 2.8 10 228-237 15-24 (38)
8 1pw4_A Glycerol-3-phosphate tr 16.4 6.2E+02 0.021 23.2 18.0 29 50-78 253-281 (451)
9 2iub_A CORA, divalent cation t 14.8 64 0.0022 30.0 1.8 54 421-477 301-362 (363)
10 2jwa_A Receptor tyrosine-prote 13.4 2.4E+02 0.0082 16.9 3.6 31 226-257 14-44 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5.5e-48 Score=388.50 Aligned_cols=431 Identities=23% Similarity=0.368 Sum_probs=393.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 010798 43 ASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (501)
Q Consensus 43 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 122 (501)
..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++.. +...+..|++++..+.+++++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 34578899999999999999999999999999999999999999999999988 77778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 123 EMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
++.++.+++++.+..+++++..+++++.++++.+++.+++..+.+..|++++.++.++..+.....+++++.|+++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999998877777888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-h---CcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccCCChHhhhhHHHHHHHH
Q 010798 203 ISAATLVLHLLLSWLVVYK-F---GAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKH-T-WTGFSVQAFSGICEFLKLS 276 (501)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~-~---~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~il~~~ 276 (501)
.++++.++|+++++++++. + ++|+.|+++|+.+++.+..++...+.+++++.+. + +.++...+++.+|++++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 4 6899999999999999999988777776533221 1 1222233457799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 010798 277 GSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTS 356 (501)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (501)
+|.+++++...+...+++.+++.+|+. ++|+|+++.++.++...+..+++++..|.+++++|++|.++.++..+++++
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999754 466999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCcHHHHHHHHhHhHHHHHHHHHhhHHhHhhhhhhccCcchhHHHHHHHHHHHHhH
Q 010798 357 ISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGI 436 (501)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (501)
++..++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++....+++++.||+|.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHH----hc-CCchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010798 437 PLGCLLGFK----FN-FGAKGIWSGMIGGTAMQTIILLWVTIRTD 476 (501)
Q Consensus 437 ~~~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 476 (501)
|+.+++.+. ++ +|..|+|+++.+++++..++..+.++|..
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 66 89999999999999999887776665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=2.6e-19 Score=179.46 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 010798 44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE 123 (501)
Q Consensus 44 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 123 (501)
+++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++.+ +...+..+++++..+.+++.+|++|++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~-~~~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSS-LVFMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3456789999999999999999999999999999999999999999999999 777889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 010798 124 MLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (501)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (501)
+.++..+.++.+...++++.+++ .++.+++..++..++++.+.+..++++.+++.++.+++....+.+++.||++.+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999999865 77888888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHH----hC-cccchhHHHHHHHHHHHHHHHHHHHHh
Q 010798 203 ISAATL-VLHLLLSWLVVYK----FG-AGLIGASLVLSLSWYIIVGAQFAYILM 250 (501)
Q Consensus 203 ~~~~~~-~~~i~~~~~li~~----~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~ 250 (501)
.++++. ++++++++++.+. ++ +|+.|+++|+.+++.+..++..+.++|
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 9999999999987 56 899999999999999988877554443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=79.05 E-value=44 Score=31.60 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=11.1
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 010798 448 FGAKGIWSGMIGGTAMQTII 467 (501)
Q Consensus 448 ~g~~G~~~a~~~~~~i~~~~ 467 (501)
.|....++...+..++..++
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 56666666555555554443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=39.88 E-value=2.3e+02 Score=26.24 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHH
Q 010798 55 AAPAVFVYLINNLMSLSTRVFCGHL--GNLELAAASLGNS 92 (501)
Q Consensus 55 ~~p~~~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~~~~~ 92 (501)
..-..+..............+...+ ++.+.+.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 71 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFY 71 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333333343344444444455555 4555554443333
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.26 E-value=1.4e+02 Score=20.64 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=7.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 010798 450 AKGIWSGMIGGTAMQTII 467 (501)
Q Consensus 450 ~~G~~~a~~~~~~i~~~~ 467 (501)
+.++..+.+.+-++..++
T Consensus 10 ~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 344444444444433333
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=28.47 E-value=3.8e+02 Score=25.28 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=7.7
Q ss_pred CCchHHHHHHHHHHHHHH
Q 010798 448 FGAKGIWSGMIGGTAMQT 465 (501)
Q Consensus 448 ~g~~G~~~a~~~~~~i~~ 465 (501)
.+....+........+..
T Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp SSTTHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=19.58 E-value=1e+02 Score=17.76 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=4.1
Q ss_pred hhHHHHHHHH
Q 010798 228 GASLVLSLSW 237 (501)
Q Consensus 228 g~~~a~~i~~ 237 (501)
|+.++.+.+-
T Consensus 15 GiVvG~v~gv 24 (38)
T 2k1k_A 15 AVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4444444333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.40 E-value=6.2e+02 Score=23.21 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010798 50 LLVRLAAPAVFVYLINNLMSLSTRVFCGH 78 (501)
Q Consensus 50 ~i~~~~~p~~~~~~~~~~~~~~~~~~i~~ 78 (501)
.++...+..++...........-..++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333344443
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=14.79 E-value=64 Score=29.96 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH-------hcCC-chHHHHHHHHHHHHHHHHHHHHHHHcCh
Q 010798 421 AFVAYVNIACYYIVGIPLGCLLGFK-------FNFG-AKGIWSGMIGGTAMQTIILLWVTIRTDW 477 (501)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~G~~~a~~~~~~i~~~~~~~~~~~~~~ 477 (501)
+..-..++++ ++.+|+.++.+.+ |..+ -.|.+++.. ..++.++..+++++|++|
T Consensus 301 ~imk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~-~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 301 EVMKVLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLA-VMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTTSCC--------------CHHHHH-HHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHH-HHHHHHHHHHHHHHHccc
Confidence 3344445554 3556666655432 1111 123333333 334445556777788887
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.42 E-value=2.4e+02 Score=16.92 Aligned_cols=31 Identities=13% Similarity=-0.078 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010798 226 LIGASLVLSLSWYIIVGAQFAYILMSDKCKHT 257 (501)
Q Consensus 226 i~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 257 (501)
+.+...+ ++..++..+....+++|++..+++
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhhhccC
Done!