Query 010798
Match_columns 501
No_of_seqs 261 out of 2171
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 14:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 71.8 31 0.0023 30.1 18.9 25 224-248 407-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 45.0 90 0.0066 26.8 38.0 25 447-471 406-430 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 7.2 1.9E+02 0.014 15.4 4.4 34 343-376 7-40 (41)
4 d2oara1 f.16.1.1 (A:10-118) Ga 5.8 1E+02 0.0075 21.0 1.3 15 452-466 61-75 (109)
5 d2iuba2 f.17.3.1 (A:286-349) M 4.0 3.1E+02 0.022 16.0 2.7 8 434-441 15-22 (64)
6 d1lghb_ f.3.1.1 (B:) Light-har 3.7 3.8E+02 0.027 14.6 4.0 33 343-375 10-42 (43)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.3 4E+02 0.029 14.3 4.3 26 339-364 4-29 (42)
8 d1ijdb_ f.3.1.1 (B:) Light-har 3.3 3.9E+02 0.028 14.0 4.2 32 343-374 8-39 (40)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.0 1E+03 0.075 18.4 6.3 9 429-437 147-155 (261)
10 d2yvxa3 f.57.1.1 (A:276-448) M 3.0 8.6E+02 0.063 17.5 6.6 40 106-145 56-97 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=71.84 E-value=31 Score=30.14 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=11.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 010798 224 AGLIGASLVLSLSWYIIVGAQFAYI 248 (501)
Q Consensus 224 ~gi~g~~~a~~i~~~~~~~~~~~~~ 248 (501)
.|..+..+......++..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544444444444443333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=45.00 E-value=90 Score=26.76 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=13.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHH
Q 010798 447 NFGAKGIWSGMIGGTAMQTIILLWV 471 (501)
Q Consensus 447 ~~g~~G~~~a~~~~~~i~~~~~~~~ 471 (501)
..|..+..+......++..++....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4676666666655555555444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.23 E-value=1.9e+02 Score=15.38 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010798 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHVI 376 (501)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (501)
+.++..+..--+.+....+++..=++.+...||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3577888888888888888888777777666654
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.78 E-value=1e+02 Score=21.02 Aligned_cols=15 Identities=0% Similarity=-0.141 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010798 452 GIWSGMIGGTAMQTI 466 (501)
Q Consensus 452 G~~~a~~~~~~i~~~ 466 (501)
|.++...+..++.+.
T Consensus 61 G~fi~a~InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAAINFFLIAF 75 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444444
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.04 E-value=3.1e+02 Score=16.02 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.4
Q ss_pred HhHHHHHH
Q 010798 434 VGIPLGCL 441 (501)
Q Consensus 434 ~~i~~~~~ 441 (501)
+.+|+.++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.70 E-value=3.8e+02 Score=14.56 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010798 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHV 375 (501)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (501)
+-++.++.+..++.....+++..=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777766666655555443
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.32 E-value=4e+02 Score=14.27 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=13.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHH
Q 010798 339 LGAGNPKAAAFSVVVVTSISFIISVV 364 (501)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (501)
+|+=|.+.-.|.+.-.+++..-.++.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~ 29 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVV 29 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.29 E-value=3.9e+02 Score=14.02 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010798 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRH 374 (501)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (501)
+.++.++..--+.+....+++..=++.+...|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45778888888888887777776665555443
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.98 E-value=1e+03 Score=18.43 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=3.8
Q ss_pred HHHHHHhHH
Q 010798 429 ACYYIVGIP 437 (501)
Q Consensus 429 ~~~~~~~i~ 437 (501)
++...-.+|
T Consensus 147 it~l~~~iP 155 (261)
T d3cx5c2 147 ITNLFSAIP 155 (261)
T ss_dssp HHHGGGGST
T ss_pred HHHHHHhcC
Confidence 333344445
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.98 E-value=8.6e+02 Score=17.49 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHhHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHH
Q 010798 106 GSAVETLCGQAYGAG--RYEMLGVYMQRATFVLLATGVPVMM 145 (501)
Q Consensus 106 ~~~~~~~is~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (501)
++-....+-|..+.+ ++++.++.+.+=+..+++.++...+
T Consensus 56 G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 56 GNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555544 4556677777777777777666554
Done!