Query 010799
Match_columns 501
No_of_seqs 357 out of 3493
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-34 1.9E-38 307.8 23.3 290 3-300 1-324 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 4.2E-25 9.1E-30 215.8 14.5 169 328-500 1-171 (287)
3 KOG4658 Apoptotic ATPase [Sign 99.9 9.7E-24 2.1E-28 229.7 15.4 169 326-501 161-332 (889)
4 PF00931 NB-ARC: NB-ARC domain 99.9 4.4E-24 9.5E-29 208.6 11.4 139 138-276 1-144 (287)
5 PLN03210 Resistant to P. syrin 99.8 1E-19 2.2E-24 207.9 18.6 171 320-501 181-366 (1153)
6 PLN03210 Resistant to P. syrin 99.8 1.3E-18 2.9E-23 198.7 17.0 158 132-292 183-361 (1153)
7 PRK00411 cdc6 cell division co 99.3 9.1E-11 2E-15 119.9 17.1 174 323-499 30-220 (394)
8 TIGR02928 orc1/cdc6 family rep 99.2 2.7E-10 5.9E-15 115.2 16.3 172 323-499 15-212 (365)
9 TIGR02639 ClpA ATP-dependent C 99.2 4.5E-10 9.7E-15 122.8 15.6 163 323-499 454-662 (731)
10 PF05729 NACHT: NACHT domain 99.2 3.2E-10 6.9E-15 100.8 11.6 143 347-499 1-163 (166)
11 COG2256 MGS1 ATPase related to 99.0 1.3E-09 2.9E-14 105.5 10.8 124 343-498 45-175 (436)
12 TIGR01243 CDC48 AAA family ATP 99.0 2E-08 4.3E-13 110.3 19.9 155 322-499 452-635 (733)
13 PF01637 Arch_ATPase: Archaeal 99.0 3.9E-09 8.5E-14 99.4 12.4 165 325-499 1-204 (234)
14 PRK11034 clpA ATP-dependent Cl 98.9 1.4E-08 3.1E-13 110.0 15.3 161 324-499 459-666 (758)
15 PTZ00112 origin recognition co 98.9 2.3E-08 4.9E-13 106.2 14.7 175 323-500 755-950 (1164)
16 KOG0735 AAA+-type ATPase [Post 98.8 3.4E-07 7.5E-12 94.5 20.6 153 323-498 667-847 (952)
17 CHL00095 clpC Clp protease ATP 98.8 1.8E-07 3.9E-12 103.8 19.6 44 133-178 179-222 (821)
18 PRK06893 DNA replication initi 98.8 2.4E-08 5.2E-13 93.8 10.4 147 321-500 14-175 (229)
19 COG1474 CDC6 Cdc6-related prot 98.8 1.1E-07 2.5E-12 94.7 15.6 170 325-500 19-204 (366)
20 TIGR03015 pepcterm_ATPase puta 98.8 2.3E-07 4.9E-12 89.7 16.9 145 346-499 43-205 (269)
21 PRK13342 recombination factor 98.8 4.4E-08 9.5E-13 100.4 12.1 144 322-499 11-164 (413)
22 KOG0733 Nuclear AAA ATPase (VC 98.8 3.9E-06 8.5E-11 85.5 24.7 133 345-500 544-693 (802)
23 PF13173 AAA_14: AAA domain 98.7 4.4E-08 9.5E-13 83.2 8.6 120 346-490 2-126 (128)
24 PF13401 AAA_22: AAA domain; P 98.7 2.2E-08 4.8E-13 85.3 5.4 113 346-467 4-125 (131)
25 PRK00411 cdc6 cell division co 98.7 1.6E-07 3.5E-12 96.0 12.6 144 131-275 28-187 (394)
26 TIGR00635 ruvB Holliday juncti 98.7 3.6E-08 7.9E-13 97.1 7.2 162 322-500 3-173 (305)
27 PRK12402 replication factor C 98.7 2.8E-07 6.1E-12 92.1 13.6 168 322-499 14-197 (337)
28 PTZ00202 tuzin; Provisional 98.7 1.3E-06 2.8E-11 86.7 17.1 163 321-499 260-434 (550)
29 PRK07003 DNA polymerase III su 98.7 2.8E-07 6.1E-12 97.5 13.3 166 321-499 14-191 (830)
30 KOG2028 ATPase related to the 98.6 1.5E-07 3.2E-12 90.0 10.0 147 323-499 138-294 (554)
31 PRK14961 DNA polymerase III su 98.6 5.8E-07 1.3E-11 90.5 14.5 166 321-499 14-191 (363)
32 PF13191 AAA_16: AAA ATPase do 98.6 8E-08 1.7E-12 87.1 7.1 50 324-375 1-51 (185)
33 PRK04841 transcriptional regul 98.6 4.7E-07 1E-11 102.7 15.0 163 323-500 14-200 (903)
34 cd00009 AAA The AAA+ (ATPases 98.6 5.2E-07 1.1E-11 77.9 11.5 125 326-469 1-131 (151)
35 PRK00080 ruvB Holliday junctio 98.6 2.4E-07 5.2E-12 92.1 10.5 48 321-368 23-73 (328)
36 KOG0730 AAA+-type ATPase [Post 98.6 1.8E-06 3.9E-11 89.0 16.8 154 322-500 433-616 (693)
37 cd01128 rho_factor Transcripti 98.6 7.6E-08 1.7E-12 90.8 6.1 88 156-244 16-114 (249)
38 PF05729 NACHT: NACHT domain 98.6 1E-07 2.2E-12 84.6 6.7 115 157-275 1-134 (166)
39 PRK13341 recombination factor 98.6 4.2E-07 9.2E-12 98.2 12.3 145 321-499 26-181 (725)
40 TIGR01242 26Sp45 26S proteasom 98.6 5.5E-07 1.2E-11 90.8 12.4 155 322-499 121-306 (364)
41 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.8E-07 8.3E-12 85.6 10.5 143 322-498 14-171 (226)
42 PRK14963 DNA polymerase III su 98.6 1.5E-07 3.3E-12 97.9 8.4 169 321-499 12-188 (504)
43 PRK14962 DNA polymerase III su 98.6 1.1E-06 2.4E-11 90.7 14.7 163 321-499 12-189 (472)
44 PRK08727 hypothetical protein; 98.6 6E-07 1.3E-11 84.5 11.7 145 321-499 17-175 (233)
45 PRK14949 DNA polymerase III su 98.6 6.5E-07 1.4E-11 96.7 12.8 167 321-499 14-191 (944)
46 PLN03025 replication factor C 98.5 7E-07 1.5E-11 88.3 12.3 158 321-499 11-171 (319)
47 PRK06645 DNA polymerase III su 98.5 1.3E-06 2.8E-11 90.6 14.5 170 321-499 19-200 (507)
48 PRK12323 DNA polymerase III su 98.5 7.4E-07 1.6E-11 93.2 12.5 169 321-499 14-196 (700)
49 PRK14960 DNA polymerase III su 98.5 1.2E-06 2.6E-11 91.9 13.6 167 321-499 13-190 (702)
50 PRK14956 DNA polymerase III su 98.5 7.2E-07 1.6E-11 90.8 11.6 167 321-499 16-193 (484)
51 PRK00440 rfc replication facto 98.5 1.9E-06 4.1E-11 85.4 14.2 154 322-499 16-174 (319)
52 PRK09376 rho transcription ter 98.5 1.5E-07 3.3E-12 92.7 5.7 99 144-244 158-267 (416)
53 PRK14957 DNA polymerase III su 98.5 1.7E-06 3.7E-11 90.4 13.8 166 321-498 14-190 (546)
54 KOG2543 Origin recognition com 98.5 2.5E-06 5.5E-11 82.5 13.7 163 323-497 6-191 (438)
55 PRK09302 circadian clock prote 98.5 5.6E-06 1.2E-10 87.4 17.8 127 330-467 257-408 (509)
56 PRK05564 DNA polymerase III su 98.5 2.4E-06 5.3E-11 84.3 14.1 154 322-498 3-164 (313)
57 PRK07940 DNA polymerase III su 98.5 2.8E-06 6E-11 85.7 14.3 164 322-498 4-188 (394)
58 PF13401 AAA_22: AAA domain; P 98.5 4.7E-07 1E-11 77.1 7.4 114 155-270 3-125 (131)
59 PF05496 RuvB_N: Holliday junc 98.5 1.6E-06 3.4E-11 79.0 11.0 147 322-499 23-192 (233)
60 COG2909 MalT ATP-dependent tra 98.5 3.9E-06 8.4E-11 89.0 15.3 165 323-499 19-207 (894)
61 PRK14964 DNA polymerase III su 98.5 2.5E-06 5.3E-11 87.9 13.6 167 321-499 11-188 (491)
62 TIGR03015 pepcterm_ATPase puta 98.5 3.4E-06 7.3E-11 81.4 14.0 96 155-253 42-145 (269)
63 PRK04195 replication factor C 98.4 1.9E-06 4.1E-11 90.2 12.8 151 322-499 13-173 (482)
64 PRK14955 DNA polymerase III su 98.4 2.1E-06 4.6E-11 87.4 12.6 173 321-499 14-199 (397)
65 PRK08084 DNA replication initi 98.4 2.7E-06 5.8E-11 80.2 11.9 144 323-499 22-180 (235)
66 PRK14951 DNA polymerase III su 98.4 3.6E-06 7.7E-11 89.2 13.8 170 321-499 14-196 (618)
67 PHA02544 44 clamp loader, smal 98.4 3.2E-06 7E-11 83.7 12.5 147 322-496 20-170 (316)
68 TIGR02928 orc1/cdc6 family rep 98.4 1.5E-06 3.3E-11 87.9 10.3 114 132-245 14-141 (365)
69 TIGR00678 holB DNA polymerase 98.4 9.3E-06 2E-10 73.9 14.4 70 427-498 95-167 (188)
70 PTZ00202 tuzin; Provisional 98.4 1.9E-05 4.2E-10 78.6 17.2 105 128-240 257-368 (550)
71 cd00009 AAA The AAA+ (ATPases 98.4 3.6E-06 7.9E-11 72.5 11.2 123 136-272 1-131 (151)
72 PRK09112 DNA polymerase III su 98.4 8.8E-06 1.9E-10 81.0 15.2 170 319-497 19-211 (351)
73 PF13173 AAA_14: AAA domain 98.4 7.7E-07 1.7E-11 75.5 6.6 102 156-275 2-103 (128)
74 PRK07994 DNA polymerase III su 98.4 3.7E-06 8.1E-11 89.2 13.1 167 321-499 14-191 (647)
75 PRK03992 proteasome-activating 98.4 5.8E-06 1.3E-10 83.9 14.0 156 322-500 130-316 (389)
76 PRK08691 DNA polymerase III su 98.4 2.8E-06 6E-11 90.0 11.9 166 321-499 14-191 (709)
77 TIGR02639 ClpA ATP-dependent C 98.4 3.8E-06 8.2E-11 92.3 13.4 152 323-498 182-357 (731)
78 TIGR02655 circ_KaiC circadian 98.4 1.8E-05 3.8E-10 82.8 17.7 128 330-468 247-399 (484)
79 PRK05896 DNA polymerase III su 98.4 2.1E-06 4.5E-11 89.9 10.6 167 321-499 14-191 (605)
80 TIGR02397 dnaX_nterm DNA polym 98.4 1E-05 2.2E-10 81.5 15.3 163 322-499 13-189 (355)
81 COG0488 Uup ATPase components 98.3 4.1E-05 9E-10 79.9 19.7 130 347-484 349-510 (530)
82 PRK14970 DNA polymerase III su 98.3 9E-06 2E-10 82.2 14.1 159 321-499 15-180 (367)
83 COG1222 RPT1 ATP-dependent 26S 98.3 1.9E-05 4.1E-10 76.0 15.1 154 322-499 150-335 (406)
84 PRK14954 DNA polymerase III su 98.3 9.4E-06 2E-10 86.3 14.5 173 321-498 14-198 (620)
85 PRK14958 DNA polymerase III su 98.3 6E-06 1.3E-10 86.3 12.9 166 321-498 14-190 (509)
86 PRK14969 DNA polymerase III su 98.3 1.1E-05 2.5E-10 84.7 14.9 167 321-499 14-191 (527)
87 PRK07764 DNA polymerase III su 98.3 7.2E-06 1.6E-10 89.9 13.8 166 321-499 13-192 (824)
88 PF00308 Bac_DnaA: Bacterial d 98.3 4.2E-06 9.1E-11 77.9 10.4 156 322-500 7-180 (219)
89 PRK09087 hypothetical protein; 98.3 7.7E-06 1.7E-10 76.4 12.0 114 346-500 44-167 (226)
90 PRK05642 DNA replication initi 98.3 5.2E-06 1.1E-10 78.2 10.9 122 346-499 45-179 (234)
91 PRK14952 DNA polymerase III su 98.3 9.4E-06 2E-10 85.6 13.8 166 321-498 11-189 (584)
92 PRK07471 DNA polymerase III su 98.3 2.3E-05 5.1E-10 78.4 15.9 173 320-499 16-213 (365)
93 TIGR02881 spore_V_K stage V sp 98.3 6.1E-06 1.3E-10 79.2 11.3 158 322-500 5-192 (261)
94 TIGR02880 cbbX_cfxQ probable R 98.2 2.5E-05 5.4E-10 75.8 14.6 155 324-499 23-208 (284)
95 PRK14959 DNA polymerase III su 98.2 1.3E-05 2.8E-10 84.4 13.5 165 321-498 14-190 (624)
96 TIGR00767 rho transcription te 98.2 3.2E-06 7E-11 83.9 7.9 87 157-244 169-266 (415)
97 PRK09111 DNA polymerase III su 98.2 8.2E-06 1.8E-10 86.6 11.3 170 321-499 22-204 (598)
98 PRK14950 DNA polymerase III su 98.2 1E-05 2.2E-10 86.4 12.2 167 322-499 15-192 (585)
99 PRK08903 DnaA regulatory inact 98.2 8.5E-06 1.8E-10 76.5 10.2 139 322-497 17-168 (227)
100 TIGR02903 spore_lon_C ATP-depe 98.2 6.3E-05 1.4E-09 80.7 17.9 139 132-272 153-335 (615)
101 TIGR03689 pup_AAA proteasome A 98.2 7.5E-06 1.6E-10 84.7 10.3 163 322-499 181-378 (512)
102 TIGR03345 VI_ClpV1 type VI sec 98.2 9.8E-06 2.1E-10 89.8 11.8 151 323-497 187-361 (852)
103 PRK08451 DNA polymerase III su 98.2 2.9E-05 6.2E-10 80.9 14.4 167 321-499 12-189 (535)
104 cd01128 rho_factor Transcripti 98.2 2.1E-06 4.5E-11 81.1 5.5 90 346-439 16-114 (249)
105 CHL00095 clpC Clp protease ATP 98.2 7.9E-06 1.7E-10 90.8 10.9 151 323-497 179-352 (821)
106 PRK06305 DNA polymerase III su 98.2 2.1E-05 4.6E-10 81.1 13.1 165 321-499 15-193 (451)
107 PTZ00454 26S protease regulato 98.2 3.7E-05 8E-10 77.8 14.5 156 321-499 143-329 (398)
108 PRK14953 DNA polymerase III su 98.2 4.6E-05 1E-09 79.2 15.2 163 321-499 14-191 (486)
109 CHL00181 cbbX CbbX; Provisiona 98.2 7.1E-05 1.5E-09 72.6 15.5 156 323-499 23-209 (287)
110 PRK12422 chromosomal replicati 98.1 3.1E-05 6.6E-10 79.7 13.5 156 321-499 109-284 (445)
111 COG1123 ATPase components of v 98.1 8.5E-05 1.8E-09 76.5 16.5 59 415-476 434-498 (539)
112 PRK14088 dnaA chromosomal repl 98.1 2.1E-05 4.6E-10 81.0 12.3 158 321-500 103-277 (440)
113 TIGR02903 spore_lon_C ATP-depe 98.1 1.9E-05 4.1E-10 84.6 12.2 173 322-500 153-367 (615)
114 PRK11331 5-methylcytosine-spec 98.1 8.2E-06 1.8E-10 82.3 8.8 108 132-244 174-283 (459)
115 PRK11034 clpA ATP-dependent Cl 98.1 1.3E-05 2.9E-10 87.2 11.1 152 323-498 186-361 (758)
116 PRK14971 DNA polymerase III su 98.1 4.2E-05 9.1E-10 81.8 14.6 163 321-498 15-192 (614)
117 PF13191 AAA_16: AAA ATPase do 98.1 1.8E-06 3.9E-11 78.1 3.5 48 134-181 1-49 (185)
118 PRK07133 DNA polymerase III su 98.1 3.6E-05 7.8E-10 82.4 13.7 163 321-498 16-189 (725)
119 PF01637 Arch_ATPase: Archaeal 98.1 4.5E-06 9.8E-11 78.4 6.2 44 135-180 1-44 (234)
120 PTZ00361 26 proteosome regulat 98.1 1.4E-05 3.1E-10 81.4 10.1 156 321-499 181-367 (438)
121 PRK15439 autoinducer 2 ABC tra 98.1 0.00024 5.1E-09 75.2 19.7 23 346-368 289-311 (510)
122 PRK14087 dnaA chromosomal repl 98.1 2.7E-05 5.9E-10 80.3 12.2 159 321-500 113-289 (450)
123 PRK14965 DNA polymerase III su 98.1 3.4E-05 7.3E-10 82.2 13.2 166 321-498 14-190 (576)
124 PF05621 TniB: Bacterial TniB 98.1 7.4E-05 1.6E-09 71.4 14.0 106 329-439 43-156 (302)
125 PRK05564 DNA polymerase III su 98.1 4.2E-05 9E-10 75.6 12.4 125 133-272 4-134 (313)
126 PRK06647 DNA polymerase III su 98.1 6.8E-05 1.5E-09 79.2 14.7 167 321-499 14-191 (563)
127 TIGR01241 FtsH_fam ATP-depende 98.1 7.5E-05 1.6E-09 78.5 14.6 157 320-499 52-238 (495)
128 PRK10865 protein disaggregatio 98.0 3.2E-05 6.8E-10 86.1 12.1 152 323-498 178-353 (857)
129 PRK06620 hypothetical protein; 98.0 4.3E-05 9.4E-10 70.8 10.9 109 347-499 45-160 (214)
130 PRK15064 ABC transporter ATP-b 98.0 0.00064 1.4E-08 72.3 21.3 57 415-475 443-502 (530)
131 TIGR00362 DnaA chromosomal rep 98.0 4.6E-05 1E-09 78.1 12.0 132 346-500 136-282 (405)
132 PRK05563 DNA polymerase III su 98.0 9.9E-05 2.1E-09 78.3 14.7 167 321-499 14-191 (559)
133 PRK07399 DNA polymerase III su 98.0 9.2E-05 2E-09 72.7 13.2 170 322-498 3-194 (314)
134 PRK13409 putative ATPase RIL; 98.0 0.00071 1.5E-08 72.4 20.7 126 347-475 366-521 (590)
135 PRK00149 dnaA chromosomal repl 98.0 6.3E-05 1.4E-09 78.1 12.3 157 321-500 120-294 (450)
136 TIGR03346 chaperone_ClpB ATP-d 98.0 5.2E-05 1.1E-09 84.7 12.2 152 323-498 173-348 (852)
137 CHL00176 ftsH cell division pr 98.0 7E-05 1.5E-09 80.2 12.5 156 322-500 182-367 (638)
138 PRK04841 transcriptional regul 98.0 6.2E-05 1.3E-09 85.6 12.9 129 132-271 13-162 (903)
139 KOG2227 Pre-initiation complex 98.0 0.00011 2.5E-09 73.1 12.8 171 322-500 149-339 (529)
140 PRK13342 recombination factor 98.0 2.9E-05 6.2E-10 79.7 9.0 109 132-266 11-124 (413)
141 KOG0989 Replication factor C, 98.0 4.7E-05 1E-09 71.9 9.4 161 322-499 35-201 (346)
142 TIGR00635 ruvB Holliday juncti 97.9 1.6E-05 3.4E-10 78.3 6.7 47 133-179 4-53 (305)
143 PRK11288 araG L-arabinose tran 97.9 0.00074 1.6E-08 71.3 19.7 60 415-475 401-463 (501)
144 PRK14086 dnaA chromosomal repl 97.9 9E-05 2E-09 77.9 12.3 156 322-500 287-460 (617)
145 PRK08058 DNA polymerase III su 97.9 0.00013 2.9E-09 72.3 13.0 163 323-497 5-180 (329)
146 PRK10982 galactose/methyl gala 97.9 0.00055 1.2E-08 72.1 18.2 58 414-475 395-458 (491)
147 TIGR00602 rad24 checkpoint pro 97.9 7.1E-05 1.5E-09 79.6 11.2 48 321-368 82-132 (637)
148 PRK14948 DNA polymerase III su 97.9 0.00021 4.5E-09 76.5 14.5 168 321-498 14-192 (620)
149 smart00382 AAA ATPases associa 97.9 0.0001 2.2E-09 62.8 9.8 87 347-440 3-90 (148)
150 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00016 3.5E-09 74.1 12.1 155 321-498 188-373 (802)
151 PF00004 AAA: ATPase family as 97.9 3.4E-05 7.3E-10 65.4 6.5 96 349-467 1-111 (132)
152 PRK09376 rho transcription ter 97.9 2.2E-05 4.7E-10 77.7 5.7 89 347-439 170-267 (416)
153 PRK08116 hypothetical protein; 97.8 7.8E-05 1.7E-09 71.6 9.2 103 347-468 115-221 (268)
154 PRK05707 DNA polymerase III su 97.8 0.00034 7.3E-09 69.1 13.9 143 344-498 20-177 (328)
155 PRK11147 ABC transporter ATPas 97.8 0.00057 1.2E-08 74.2 16.6 312 158-483 31-510 (635)
156 PRK12377 putative replication 97.8 0.0001 2.2E-09 69.6 9.0 100 346-466 101-204 (248)
157 CHL00195 ycf46 Ycf46; Provisio 97.8 0.0003 6.5E-09 73.0 13.1 153 322-499 227-405 (489)
158 COG0593 DnaA ATPase involved i 97.8 0.00016 3.5E-09 72.4 10.5 133 345-499 112-257 (408)
159 PRK00080 ruvB Holliday junctio 97.8 7.4E-05 1.6E-09 74.3 8.1 49 132-180 24-75 (328)
160 PF13177 DNA_pol3_delta2: DNA 97.8 0.00027 5.9E-09 62.5 10.8 147 327-487 1-162 (162)
161 KOG0927 Predicted transporter 97.8 0.0011 2.4E-08 67.4 16.1 139 326-469 397-567 (614)
162 PRK08181 transposase; Validate 97.8 0.00014 3.1E-09 69.5 9.4 99 347-468 107-209 (269)
163 PRK07003 DNA polymerase III su 97.8 0.0002 4.2E-09 76.5 11.2 133 132-272 15-160 (830)
164 TIGR00767 rho transcription te 97.7 4.6E-05 1E-09 75.8 6.1 90 347-439 169-266 (415)
165 KOG2028 ATPase related to the 97.7 8.5E-05 1.8E-09 71.5 7.0 120 133-273 138-263 (554)
166 cd01393 recA_like RecA is a b 97.7 0.00028 6.2E-09 66.1 10.7 129 334-467 7-168 (226)
167 TIGR00763 lon ATP-dependent pr 97.7 0.00031 6.8E-09 77.8 12.5 160 323-498 320-504 (775)
168 PRK11331 5-methylcytosine-spec 97.7 0.00013 2.9E-09 73.7 8.6 108 322-439 174-283 (459)
169 COG0470 HolB ATPase involved i 97.7 0.00053 1.1E-08 68.0 13.0 145 325-490 3-172 (325)
170 PRK06526 transposase; Provisio 97.7 9.8E-05 2.1E-09 70.2 7.2 100 346-468 98-201 (254)
171 KOG2004 Mitochondrial ATP-depe 97.7 0.00023 5E-09 74.3 10.2 159 323-498 411-595 (906)
172 PRK03003 GTP-binding protein D 97.7 0.00049 1.1E-08 71.9 13.0 43 327-369 186-234 (472)
173 PRK04195 replication factor C 97.7 0.00018 3.8E-09 75.4 9.7 118 132-269 13-138 (482)
174 COG3903 Predicted ATPase [Gene 97.7 2.3E-05 5E-10 77.1 2.7 140 345-499 13-155 (414)
175 COG1474 CDC6 Cdc6-related prot 97.7 0.00028 6.1E-09 70.6 10.4 110 133-244 17-134 (366)
176 PRK10762 D-ribose transporter 97.7 0.00017 3.8E-09 76.1 9.5 22 347-368 279-300 (501)
177 PRK06893 DNA replication initi 97.6 0.00014 3.1E-09 68.2 7.6 94 156-274 39-137 (229)
178 COG0466 Lon ATP-dependent Lon 97.6 0.00047 1E-08 72.3 11.7 158 324-498 324-507 (782)
179 PRK10787 DNA-binding ATP-depen 97.6 0.00038 8.3E-09 76.6 11.8 162 323-499 322-506 (784)
180 PRK14961 DNA polymerase III su 97.6 0.00059 1.3E-08 68.7 12.1 46 132-178 15-60 (363)
181 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00015 3.1E-09 68.5 7.2 102 335-439 8-126 (235)
182 PRK07952 DNA replication prote 97.6 0.00037 8.1E-09 65.6 9.6 116 332-467 85-204 (244)
183 PRK10536 hypothetical protein; 97.6 0.00061 1.3E-08 63.9 10.8 52 323-378 55-106 (262)
184 PRK14963 DNA polymerase III su 97.6 0.00025 5.4E-09 74.1 9.2 132 132-269 13-154 (504)
185 PF01695 IstB_IS21: IstB-like 97.6 7.8E-05 1.7E-09 67.0 4.7 73 346-439 47-119 (178)
186 PRK12402 replication factor C 97.6 0.0003 6.5E-09 70.2 9.2 45 132-178 14-58 (337)
187 KOG1514 Origin recognition com 97.6 0.0013 2.9E-08 68.7 13.8 170 324-498 397-588 (767)
188 PRK13531 regulatory ATPase Rav 97.6 0.00049 1.1E-08 70.3 10.4 42 323-368 20-61 (498)
189 PRK13341 recombination factor 97.6 0.00027 5.9E-09 76.8 9.2 46 132-179 27-75 (725)
190 TIGR01243 CDC48 AAA family ATP 97.6 0.00053 1.2E-08 75.7 11.6 154 321-498 176-358 (733)
191 PRK10865 protein disaggregatio 97.5 0.0015 3.3E-08 72.9 14.9 44 133-178 178-221 (857)
192 PF02562 PhoH: PhoH-like prote 97.5 0.00065 1.4E-08 61.9 9.9 129 327-469 4-157 (205)
193 PRK10938 putative molybdenum t 97.5 0.00051 1.1E-08 72.3 10.6 22 347-368 287-308 (490)
194 PRK08118 topology modulation p 97.5 3.5E-05 7.6E-10 68.5 1.5 35 157-191 2-37 (167)
195 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0012 2.6E-08 63.3 12.2 155 331-499 10-198 (262)
196 PRK09700 D-allose transporter 97.5 0.0011 2.5E-08 70.1 13.2 23 346-368 289-311 (510)
197 KOG2543 Origin recognition com 97.5 0.00048 1E-08 67.1 9.0 111 132-247 5-129 (438)
198 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.9E-08 66.9 12.7 134 328-493 22-161 (398)
199 PF04665 Pox_A32: Poxvirus A32 97.5 0.00041 8.9E-09 64.7 8.2 33 347-381 14-46 (241)
200 PRK14960 DNA polymerase III su 97.5 0.0008 1.7E-08 71.2 11.2 130 132-270 14-157 (702)
201 PRK09183 transposase/IS protei 97.5 0.00029 6.3E-09 67.3 7.3 22 347-368 103-124 (259)
202 KOG0744 AAA+-type ATPase [Post 97.5 0.00079 1.7E-08 64.1 9.8 140 345-498 176-339 (423)
203 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0016 3.5E-08 72.9 14.2 164 323-498 565-775 (852)
204 PRK14957 DNA polymerase III su 97.5 0.00088 1.9E-08 70.3 11.3 46 132-178 15-60 (546)
205 PF05496 RuvB_N: Holliday junc 97.5 0.00017 3.6E-09 66.0 5.1 49 131-179 22-73 (233)
206 COG2256 MGS1 ATPase related to 97.5 0.00047 1E-08 67.7 8.5 114 133-272 24-144 (436)
207 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00018 4E-09 67.3 5.7 40 138-179 22-61 (226)
208 cd01394 radB RadB. The archaea 97.5 0.00041 8.8E-09 64.7 7.9 101 333-439 6-114 (218)
209 PRK12323 DNA polymerase III su 97.5 0.001 2.3E-08 70.1 11.5 46 132-178 15-60 (700)
210 PRK09361 radB DNA repair and r 97.5 0.00045 9.8E-09 64.7 8.2 99 334-438 11-117 (225)
211 PRK13549 xylose transporter AT 97.5 0.0013 2.8E-08 69.6 12.5 22 347-368 289-310 (506)
212 COG3899 Predicted ATPase [Gene 97.4 0.00072 1.6E-08 75.2 11.0 49 325-375 2-51 (849)
213 PRK09354 recA recombinase A; P 97.4 0.00068 1.5E-08 66.8 9.5 97 334-439 47-149 (349)
214 PRK06835 DNA replication prote 97.4 0.00025 5.5E-09 69.8 6.6 101 347-467 184-288 (329)
215 PRK14949 DNA polymerase III su 97.4 0.001 2.3E-08 72.5 11.6 47 132-179 15-61 (944)
216 PTZ00112 origin recognition co 97.4 0.00067 1.5E-08 73.2 9.9 112 132-243 754-879 (1164)
217 PLN03025 replication factor C 97.4 0.00093 2E-08 66.1 10.5 45 132-178 12-56 (319)
218 KOG0734 AAA+-type ATPase conta 97.4 0.0027 5.9E-08 64.4 13.5 153 321-497 302-482 (752)
219 smart00382 AAA ATPases associa 97.4 0.00053 1.1E-08 58.2 7.7 88 157-247 3-92 (148)
220 PHA02544 44 clamp loader, smal 97.4 0.00099 2.1E-08 65.9 10.6 118 132-270 20-140 (316)
221 PRK11608 pspF phage shock prot 97.4 0.002 4.3E-08 63.9 12.6 48 321-368 4-51 (326)
222 COG0542 clpA ATP-binding subun 97.4 0.00057 1.2E-08 73.5 9.1 152 323-498 170-345 (786)
223 KOG0731 AAA+-type ATPase conta 97.4 0.0024 5.3E-08 68.3 13.6 156 320-500 308-496 (774)
224 TIGR02633 xylG D-xylose ABC tr 97.4 0.0018 3.9E-08 68.4 12.8 22 347-368 287-308 (500)
225 PRK00440 rfc replication facto 97.4 0.0019 4.2E-08 63.8 12.3 121 132-269 16-140 (319)
226 TIGR02902 spore_lonB ATP-depen 97.4 0.00066 1.4E-08 71.7 9.2 45 322-368 64-108 (531)
227 COG2812 DnaX DNA polymerase II 97.4 0.0002 4.4E-09 73.8 5.1 166 322-499 15-191 (515)
228 PRK08116 hypothetical protein; 97.4 0.00024 5.2E-09 68.2 5.4 100 157-269 115-219 (268)
229 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0014 3E-08 73.0 12.0 44 133-178 187-230 (852)
230 PRK06871 DNA polymerase III su 97.4 0.0053 1.1E-07 60.4 14.6 155 331-498 10-178 (325)
231 COG2909 MalT ATP-dependent tra 97.4 0.0019 4.1E-08 69.2 12.2 127 143-273 25-172 (894)
232 PRK14958 DNA polymerase III su 97.3 0.0017 3.8E-08 68.0 11.7 46 132-178 15-60 (509)
233 PF14532 Sigma54_activ_2: Sigm 97.3 0.00046 9.9E-09 59.3 6.2 107 326-468 1-110 (138)
234 TIGR01242 26Sp45 26S proteasom 97.3 0.00076 1.6E-08 68.1 8.5 48 132-179 121-179 (364)
235 cd01131 PilT Pilus retraction 97.3 0.001 2.2E-08 61.0 8.4 113 347-474 2-115 (198)
236 PRK06645 DNA polymerase III su 97.3 0.0021 4.6E-08 67.0 11.7 46 132-178 20-65 (507)
237 PF10443 RNA12: RNA12 protein; 97.3 0.0033 7.1E-08 63.0 12.4 69 429-500 149-230 (431)
238 PRK08691 DNA polymerase III su 97.3 0.0019 4.2E-08 68.9 11.4 46 132-178 15-60 (709)
239 cd00983 recA RecA is a bacter 97.3 0.00064 1.4E-08 66.5 7.3 97 334-439 42-144 (325)
240 PRK14962 DNA polymerase III su 97.3 0.0021 4.5E-08 66.7 11.4 46 132-178 13-58 (472)
241 cd01120 RecA-like_NTPases RecA 97.3 0.0016 3.4E-08 57.2 9.3 38 348-389 1-38 (165)
242 KOG0727 26S proteasome regulat 97.3 0.0061 1.3E-07 56.2 12.9 152 322-496 154-336 (408)
243 COG4608 AppF ABC-type oligopep 97.3 0.0012 2.7E-08 61.9 8.6 126 346-476 39-178 (268)
244 PRK06921 hypothetical protein; 97.3 0.001 2.3E-08 63.7 8.5 35 345-381 116-151 (266)
245 TIGR02881 spore_V_K stage V sp 97.3 0.00068 1.5E-08 65.1 7.3 46 133-178 6-64 (261)
246 PRK04296 thymidine kinase; Pro 97.3 0.00055 1.2E-08 62.3 6.3 112 347-469 3-117 (190)
247 PRK14951 DNA polymerase III su 97.3 0.0024 5.1E-08 68.1 11.8 45 132-177 15-59 (618)
248 PRK08939 primosomal protein Dn 97.3 0.00047 1E-08 67.4 6.2 120 327-467 135-260 (306)
249 PRK10536 hypothetical protein; 97.3 0.0016 3.4E-08 61.2 9.3 132 130-268 52-210 (262)
250 TIGR02237 recomb_radB DNA repa 97.3 0.00071 1.5E-08 62.6 7.1 95 339-439 5-108 (209)
251 PF05673 DUF815: Protein of un 97.3 0.0018 3.9E-08 60.1 9.5 127 123-274 17-154 (249)
252 PF07728 AAA_5: AAA domain (dy 97.3 0.00013 2.8E-09 62.7 1.9 86 349-450 2-89 (139)
253 PHA00729 NTP-binding motif con 97.3 0.0013 2.8E-08 60.7 8.5 24 345-368 16-39 (226)
254 KOG0741 AAA+-type ATPase [Post 97.3 0.002 4.3E-08 65.3 10.3 127 344-497 536-684 (744)
255 PRK06964 DNA polymerase III su 97.3 0.008 1.7E-07 59.5 14.6 69 428-498 132-203 (342)
256 TIGR02974 phageshock_pspF psp 97.3 0.0029 6.3E-08 62.7 11.6 158 325-496 1-184 (329)
257 PRK08769 DNA polymerase III su 97.2 0.0074 1.6E-07 59.2 14.2 155 331-497 12-183 (319)
258 PRK14955 DNA polymerase III su 97.2 0.0025 5.4E-08 65.0 11.4 46 132-178 15-60 (397)
259 PRK07940 DNA polymerase III su 97.2 0.0029 6.2E-08 64.1 11.6 45 133-177 5-57 (394)
260 PRK14969 DNA polymerase III su 97.2 0.0033 7.1E-08 66.4 12.5 46 132-178 15-60 (527)
261 PF00158 Sigma54_activat: Sigm 97.2 0.00099 2.1E-08 59.2 7.3 44 325-368 1-44 (168)
262 TIGR02012 tigrfam_recA protein 97.2 0.00085 1.8E-08 65.6 7.5 97 334-439 42-144 (321)
263 CHL00181 cbbX CbbX; Provisiona 97.2 0.0014 3.1E-08 63.5 9.1 104 157-274 60-174 (287)
264 PRK11819 putative ABC transpor 97.2 0.0029 6.4E-08 67.6 12.2 213 158-381 35-383 (556)
265 PRK07993 DNA polymerase III su 97.2 0.0081 1.8E-07 59.6 14.3 155 330-498 9-179 (334)
266 COG2884 FtsE Predicted ATPase 97.2 0.0046 1E-07 54.7 11.0 62 412-475 139-204 (223)
267 PF00004 AAA: ATPase family as 97.2 0.00095 2.1E-08 56.4 6.8 22 159-180 1-22 (132)
268 TIGR01817 nifA Nif-specific re 97.2 0.004 8.7E-08 66.3 12.9 164 321-496 194-381 (534)
269 PF14516 AAA_35: AAA-like doma 97.2 0.011 2.4E-07 58.8 15.0 167 324-498 12-213 (331)
270 COG0464 SpoVK ATPases of the A 97.2 0.0027 6E-08 66.9 11.4 155 323-500 242-424 (494)
271 TIGR02397 dnaX_nterm DNA polym 97.2 0.004 8.6E-08 62.6 12.2 46 132-178 13-58 (355)
272 PRK07994 DNA polymerase III su 97.2 0.0022 4.8E-08 68.5 10.5 46 132-178 15-60 (647)
273 PRK15429 formate hydrogenlyase 97.2 0.0023 4.9E-08 70.2 10.8 156 321-488 374-551 (686)
274 KOG0652 26S proteasome regulat 97.2 0.0066 1.4E-07 56.2 11.7 157 317-496 165-352 (424)
275 PRK10733 hflB ATP-dependent me 97.1 0.0027 5.9E-08 68.7 11.0 155 322-499 151-335 (644)
276 PRK08118 topology modulation p 97.1 0.00087 1.9E-08 59.5 6.0 35 347-381 2-37 (167)
277 PF05673 DUF815: Protein of un 97.1 0.0041 9E-08 57.8 10.4 48 321-368 25-74 (249)
278 KOG2228 Origin recognition com 97.1 0.0037 8.1E-08 60.0 10.2 170 323-499 24-219 (408)
279 PRK14956 DNA polymerase III su 97.1 0.0031 6.7E-08 64.7 10.5 46 132-178 17-62 (484)
280 KOG0728 26S proteasome regulat 97.1 0.011 2.3E-07 54.5 12.6 150 325-498 149-330 (404)
281 COG1484 DnaC DNA replication p 97.1 0.0024 5.2E-08 60.7 9.0 75 345-439 104-178 (254)
282 PRK08699 DNA polymerase III su 97.1 0.006 1.3E-07 60.3 12.0 67 429-497 114-183 (325)
283 PF04665 Pox_A32: Poxvirus A32 97.1 0.0012 2.6E-08 61.6 6.7 37 157-195 14-50 (241)
284 PF05621 TniB: Bacterial TniB 97.1 0.0056 1.2E-07 58.7 11.3 139 133-271 34-191 (302)
285 TIGR02880 cbbX_cfxQ probable R 97.1 0.003 6.6E-08 61.3 9.8 100 158-271 60-170 (284)
286 PF07693 KAP_NTPase: KAP famil 97.1 0.0085 1.8E-07 59.4 13.3 167 328-498 1-262 (325)
287 PRK09518 bifunctional cytidyla 97.1 0.0021 4.5E-08 70.7 9.7 45 325-369 421-473 (712)
288 cd03214 ABC_Iron-Siderophores_ 97.1 0.0036 7.7E-08 56.4 9.7 123 347-474 26-164 (180)
289 TIGR00678 holB DNA polymerase 97.1 0.0086 1.9E-07 54.3 12.2 112 144-271 3-136 (188)
290 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0018 3.9E-08 56.5 7.2 118 347-469 3-139 (159)
291 PRK07261 topology modulation p 97.1 0.0015 3.2E-08 58.4 6.8 34 158-191 2-36 (171)
292 PRK06090 DNA polymerase III su 97.1 0.017 3.7E-07 56.7 14.6 154 331-498 11-179 (319)
293 KOG0736 Peroxisome assembly fa 97.1 0.0018 3.8E-08 68.5 8.1 94 323-439 672-775 (953)
294 PRK05022 anaerobic nitric oxid 97.1 0.0028 6.1E-08 66.9 9.9 155 322-488 186-362 (509)
295 PRK05896 DNA polymerase III su 97.0 0.0044 9.6E-08 65.4 11.0 46 132-178 15-60 (605)
296 PRK08727 hypothetical protein; 97.0 0.0021 4.6E-08 60.4 7.9 36 157-194 42-77 (233)
297 PLN00020 ribulose bisphosphate 97.0 0.0019 4.2E-08 63.4 7.4 25 344-368 146-170 (413)
298 PRK14964 DNA polymerase III su 97.0 0.0056 1.2E-07 63.4 11.3 46 132-178 12-57 (491)
299 PRK14970 DNA polymerase III su 97.0 0.0058 1.3E-07 61.8 11.4 46 132-178 16-61 (367)
300 PRK06067 flagellar accessory p 97.0 0.0042 9.1E-08 58.5 9.6 128 333-468 12-165 (234)
301 PRK14950 DNA polymerase III su 97.0 0.0029 6.3E-08 67.8 9.5 131 132-269 15-158 (585)
302 COG1373 Predicted ATPase (AAA+ 97.0 0.003 6.5E-08 64.3 9.0 96 158-275 39-135 (398)
303 cd03216 ABC_Carb_Monos_I This 97.0 0.002 4.4E-08 57.0 6.9 117 347-474 27-148 (163)
304 PF08423 Rad51: Rad51; InterP 97.0 0.002 4.3E-08 61.4 7.2 103 334-439 26-144 (256)
305 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00063 1.4E-08 67.1 3.8 46 324-369 52-101 (361)
306 TIGR03594 GTPase_EngA ribosome 97.0 0.0069 1.5E-07 62.7 11.7 43 327-369 147-195 (429)
307 PRK10820 DNA-binding transcrip 97.0 0.005 1.1E-07 65.1 10.7 48 321-368 202-249 (520)
308 COG2204 AtoC Response regulato 97.0 0.0037 7.9E-08 63.8 9.2 169 190-369 7-187 (464)
309 COG1223 Predicted ATPase (AAA+ 97.0 0.0076 1.7E-07 55.9 10.3 155 322-500 120-298 (368)
310 PRK07764 DNA polymerase III su 97.0 0.0059 1.3E-07 67.5 11.4 46 132-178 14-59 (824)
311 PRK08084 DNA replication initi 97.0 0.0025 5.5E-08 60.0 7.6 24 156-179 45-68 (235)
312 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0041 8.8E-08 58.8 8.9 123 333-466 8-169 (237)
313 COG0542 clpA ATP-binding subun 96.9 0.0052 1.1E-07 66.3 10.4 117 323-452 491-619 (786)
314 PRK09087 hypothetical protein; 96.9 0.0024 5.3E-08 59.7 7.1 24 156-179 44-67 (226)
315 cd03223 ABCD_peroxisomal_ALDP 96.9 0.011 2.4E-07 52.4 11.0 115 347-472 28-152 (166)
316 KOG0726 26S proteasome regulat 96.9 0.011 2.4E-07 55.6 11.0 121 322-466 184-332 (440)
317 TIGR02858 spore_III_AA stage I 96.9 0.015 3.2E-07 55.7 12.3 117 345-473 110-234 (270)
318 KOG0991 Replication factor C, 96.9 0.0036 7.9E-08 57.0 7.5 46 321-368 25-70 (333)
319 PRK00093 GTP-binding protein D 96.9 0.011 2.3E-07 61.4 12.3 24 346-369 173-196 (435)
320 PRK07261 topology modulation p 96.9 0.0025 5.4E-08 56.9 6.5 21 348-368 2-22 (171)
321 cd01121 Sms Sms (bacterial rad 96.9 0.003 6.6E-08 63.4 7.7 98 332-439 68-169 (372)
322 PRK09111 DNA polymerase III su 96.9 0.0091 2E-07 63.7 11.7 46 132-178 23-68 (598)
323 PRK11889 flhF flagellar biosyn 96.9 0.012 2.6E-07 58.7 11.6 24 345-368 240-263 (436)
324 KOG0729 26S proteasome regulat 96.9 0.012 2.5E-07 54.8 10.6 123 323-469 177-327 (435)
325 COG0466 Lon ATP-dependent Lon 96.8 0.018 3.9E-07 60.9 13.2 52 133-186 323-378 (782)
326 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.019 4.1E-07 53.8 12.6 124 333-467 7-165 (229)
327 PRK15455 PrkA family serine pr 96.8 0.0012 2.6E-08 68.5 4.7 47 322-368 75-125 (644)
328 PRK03992 proteasome-activating 96.8 0.0049 1.1E-07 62.7 9.0 48 132-179 130-188 (389)
329 COG1618 Predicted nucleotide k 96.8 0.0041 8.9E-08 53.5 6.9 22 347-368 6-27 (179)
330 KOG2227 Pre-initiation complex 96.8 0.0073 1.6E-07 60.6 9.7 113 131-243 148-266 (529)
331 PRK12377 putative replication 96.8 0.0038 8.2E-08 59.0 7.4 73 156-243 101-173 (248)
332 cd03222 ABC_RNaseL_inhibitor T 96.8 0.01 2.2E-07 53.2 9.8 106 347-474 26-138 (177)
333 COG0396 sufC Cysteine desulfur 96.8 0.015 3.2E-07 53.3 10.7 58 418-476 152-212 (251)
334 PLN03187 meiotic recombination 96.8 0.0063 1.4E-07 60.3 9.2 102 335-439 115-232 (344)
335 COG4172 ABC-type uncharacteriz 96.8 0.015 3.2E-07 57.5 11.4 53 420-475 436-494 (534)
336 PRK04328 hypothetical protein; 96.8 0.0077 1.7E-07 57.3 9.5 122 334-466 11-171 (249)
337 COG1484 DnaC DNA replication p 96.8 0.0023 4.9E-08 60.9 5.8 75 155-244 104-178 (254)
338 cd03247 ABCC_cytochrome_bd The 96.8 0.014 3E-07 52.4 10.7 114 347-473 29-162 (178)
339 PRK14954 DNA polymerase III su 96.8 0.01 2.2E-07 63.5 11.2 46 132-178 15-60 (620)
340 PRK14952 DNA polymerase III su 96.8 0.014 3E-07 62.1 12.0 46 132-178 12-57 (584)
341 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.5E-08 55.1 3.3 21 348-368 1-21 (121)
342 PRK06526 transposase; Provisio 96.8 0.011 2.4E-07 56.2 10.3 73 156-244 98-170 (254)
343 PF00308 Bac_DnaA: Bacterial d 96.8 0.0062 1.3E-07 56.7 8.4 120 135-270 11-139 (219)
344 PRK08181 transposase; Validate 96.8 0.0038 8.2E-08 59.8 7.1 71 157-243 107-177 (269)
345 PRK05642 DNA replication initi 96.8 0.0039 8.5E-08 58.7 7.1 91 156-271 45-140 (234)
346 COG1136 SalX ABC-type antimicr 96.7 0.014 3.1E-07 53.8 10.5 62 411-475 143-210 (226)
347 COG0468 RecA RecA/RadA recombi 96.7 0.0095 2.1E-07 57.0 9.6 100 335-439 49-152 (279)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.018 4E-07 49.7 10.7 104 347-474 27-133 (144)
349 PF07728 AAA_5: AAA domain (dy 96.7 0.00058 1.2E-08 58.7 1.2 85 159-255 2-89 (139)
350 PRK06696 uridine kinase; Valid 96.7 0.0019 4.2E-08 60.3 4.9 42 327-368 2-44 (223)
351 cd01125 repA Hexameric Replica 96.7 0.012 2.5E-07 55.7 10.2 145 348-493 3-198 (239)
352 cd03228 ABCC_MRP_Like The MRP 96.7 0.012 2.5E-07 52.5 9.7 116 347-473 29-160 (171)
353 PRK13695 putative NTPase; Prov 96.7 0.0035 7.7E-08 56.1 6.3 64 428-496 96-169 (174)
354 PRK12608 transcription termina 96.7 0.0058 1.3E-07 60.7 8.2 102 141-244 119-231 (380)
355 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0053 1.2E-07 58.7 7.8 41 344-388 34-74 (259)
356 KOG0735 AAA+-type ATPase [Post 96.7 0.014 3E-07 61.4 11.1 128 344-497 429-584 (952)
357 PRK14088 dnaA chromosomal repl 96.7 0.012 2.6E-07 60.8 10.9 75 156-244 130-205 (440)
358 PRK08939 primosomal protein Dn 96.7 0.073 1.6E-06 52.1 15.8 117 137-269 135-259 (306)
359 PHA02244 ATPase-like protein 96.7 0.0094 2E-07 59.0 9.5 40 325-368 98-141 (383)
360 PRK11388 DNA-binding transcrip 96.7 0.0093 2E-07 65.0 10.6 47 322-368 324-370 (638)
361 TIGR00708 cobA cob(I)alamin ad 96.7 0.0072 1.6E-07 53.4 7.8 114 347-468 6-140 (173)
362 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0057 1.2E-07 58.3 7.7 94 157-252 70-183 (274)
363 TIGR02329 propionate_PrpR prop 96.7 0.017 3.7E-07 60.8 11.9 47 322-368 211-257 (526)
364 COG1124 DppF ABC-type dipeptid 96.7 0.014 3E-07 53.9 9.7 63 413-475 144-209 (252)
365 cd03238 ABC_UvrA The excision 96.7 0.017 3.7E-07 51.7 10.3 114 347-473 22-154 (176)
366 PRK05541 adenylylsulfate kinas 96.6 0.0097 2.1E-07 53.3 8.6 35 345-381 6-40 (176)
367 PRK12608 transcription termina 96.6 0.0083 1.8E-07 59.6 8.7 103 332-439 120-231 (380)
368 smart00763 AAA_PrkA PrkA AAA d 96.6 0.002 4.3E-08 63.6 4.4 48 133-180 51-102 (361)
369 KOG0737 AAA+-type ATPase [Post 96.6 0.012 2.6E-07 57.4 9.5 67 310-378 79-157 (386)
370 PF13207 AAA_17: AAA domain; P 96.6 0.0012 2.6E-08 55.0 2.4 21 158-178 1-21 (121)
371 PRK14959 DNA polymerase III su 96.6 0.018 3.9E-07 61.2 11.5 46 132-178 15-60 (624)
372 cd03246 ABCC_Protease_Secretio 96.6 0.011 2.4E-07 52.8 8.6 122 347-473 29-161 (173)
373 PRK14953 DNA polymerase III su 96.6 0.026 5.5E-07 59.0 12.4 46 132-178 15-60 (486)
374 PRK07471 DNA polymerase III su 96.6 0.019 4E-07 57.7 11.0 46 131-177 17-62 (365)
375 PRK11823 DNA repair protein Ra 96.6 0.012 2.6E-07 60.9 9.7 99 331-439 65-167 (446)
376 PRK14965 DNA polymerase III su 96.6 0.023 5.1E-07 60.7 12.1 46 132-178 15-60 (576)
377 PRK09183 transposase/IS protei 96.6 0.0062 1.3E-07 58.2 7.0 73 157-244 103-175 (259)
378 PRK07667 uridine kinase; Provi 96.5 0.0046 9.9E-08 56.4 5.8 37 332-368 3-39 (193)
379 TIGR02239 recomb_RAD51 DNA rep 96.5 0.0091 2E-07 58.8 8.2 104 333-439 83-202 (316)
380 TIGR00763 lon ATP-dependent pr 96.5 0.064 1.4E-06 59.7 15.8 47 133-179 320-370 (775)
381 COG0465 HflB ATP-dependent Zn 96.5 0.034 7.4E-07 58.5 12.7 95 322-439 149-253 (596)
382 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0091 2E-07 56.2 8.0 90 154-244 17-126 (235)
383 PF02562 PhoH: PhoH-like prote 96.5 0.0062 1.3E-07 55.6 6.4 126 137-271 4-156 (205)
384 PF00448 SRP54: SRP54-type pro 96.5 0.009 2E-07 54.5 7.5 23 346-368 1-23 (196)
385 PRK06620 hypothetical protein; 96.5 0.0039 8.4E-08 57.8 5.0 24 157-180 45-68 (214)
386 COG2255 RuvB Holliday junction 96.5 0.0032 6.9E-08 59.2 4.4 47 322-368 25-74 (332)
387 PLN03186 DNA repair protein RA 96.5 0.015 3.1E-07 57.8 9.3 103 334-439 111-229 (342)
388 COG1120 FepC ABC-type cobalami 96.5 0.018 4E-07 54.3 9.5 62 411-475 139-206 (258)
389 PRK08533 flagellar accessory p 96.5 0.012 2.6E-07 55.2 8.4 50 344-399 22-71 (230)
390 PRK00771 signal recognition pa 96.5 0.034 7.4E-07 57.0 12.2 24 345-368 94-117 (437)
391 cd03230 ABC_DR_subfamily_A Thi 96.5 0.017 3.8E-07 51.5 9.0 112 347-474 27-161 (173)
392 KOG0651 26S proteasome regulat 96.5 0.012 2.6E-07 56.1 8.0 102 345-469 165-282 (388)
393 PRK14087 dnaA chromosomal repl 96.5 0.01 2.2E-07 61.4 8.4 103 156-270 141-248 (450)
394 TIGR02236 recomb_radA DNA repa 96.5 0.013 2.8E-07 57.8 8.9 102 335-439 84-203 (310)
395 PRK09112 DNA polymerase III su 96.5 0.019 4.1E-07 57.3 10.0 48 130-178 20-67 (351)
396 TIGR00416 sms DNA repair prote 96.5 0.0084 1.8E-07 62.0 7.8 102 328-439 76-181 (454)
397 TIGR02238 recomb_DMC1 meiotic 96.4 0.021 4.5E-07 56.1 10.1 103 334-439 84-202 (313)
398 cd00984 DnaB_C DnaB helicase C 96.4 0.018 3.9E-07 54.4 9.5 117 345-466 12-171 (242)
399 COG1875 NYN ribonuclease and A 96.4 0.025 5.4E-07 55.2 10.2 135 325-469 226-389 (436)
400 COG2274 SunT ABC-type bacterio 96.4 0.0088 1.9E-07 65.0 8.1 61 412-474 611-674 (709)
401 TIGR02640 gas_vesic_GvpN gas v 96.4 0.015 3.2E-07 55.8 8.8 55 141-204 10-64 (262)
402 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0089 1.9E-07 59.8 7.5 104 344-469 60-168 (362)
403 PRK04301 radA DNA repair and r 96.4 0.013 2.8E-07 58.0 8.6 102 335-439 91-209 (317)
404 PRK15424 propionate catabolism 96.4 0.03 6.5E-07 59.0 11.6 48 322-369 218-265 (538)
405 PRK10923 glnG nitrogen regulat 96.4 0.029 6.3E-07 58.8 11.7 46 323-368 138-183 (469)
406 PTZ00035 Rad51 protein; Provis 96.4 0.024 5.3E-07 56.3 10.5 104 333-439 105-224 (337)
407 PTZ00454 26S protease regulato 96.4 0.021 4.5E-07 58.1 10.1 48 132-179 144-202 (398)
408 COG1126 GlnQ ABC-type polar am 96.4 0.031 6.6E-07 50.8 9.8 65 410-475 136-203 (240)
409 PF14532 Sigma54_activ_2: Sigm 96.4 0.0064 1.4E-07 52.1 5.5 46 136-181 1-46 (138)
410 KOG0739 AAA+-type ATPase [Post 96.4 0.022 4.9E-07 53.9 9.2 70 346-439 166-236 (439)
411 PRK09519 recA DNA recombinatio 96.4 0.011 2.4E-07 64.3 8.3 98 333-439 46-149 (790)
412 cd01131 PilT Pilus retraction 96.4 0.0079 1.7E-07 55.1 6.3 110 157-275 2-113 (198)
413 PRK06696 uridine kinase; Valid 96.4 0.0038 8.1E-08 58.4 4.2 41 138-178 3-44 (223)
414 PRK14971 DNA polymerase III su 96.4 0.033 7.2E-07 59.9 11.9 46 132-178 16-61 (614)
415 PRK06647 DNA polymerase III su 96.4 0.04 8.6E-07 58.6 12.3 46 132-178 15-60 (563)
416 PRK06921 hypothetical protein; 96.4 0.0093 2E-07 57.2 6.9 24 156-179 117-140 (266)
417 TIGR00362 DnaA chromosomal rep 96.4 0.013 2.8E-07 60.1 8.5 73 156-244 136-210 (405)
418 COG1066 Sms Predicted ATP-depe 96.4 0.015 3.3E-07 57.6 8.4 100 329-439 76-179 (456)
419 PRK06762 hypothetical protein; 96.3 0.016 3.6E-07 51.2 8.1 22 347-368 3-24 (166)
420 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.5E-07 54.4 7.4 86 154-243 10-107 (209)
421 cd03215 ABC_Carb_Monos_II This 96.3 0.015 3.3E-07 52.4 7.9 55 419-474 113-170 (182)
422 PRK07132 DNA polymerase III su 96.3 0.14 3E-06 50.0 14.9 140 332-497 5-160 (299)
423 PF13671 AAA_33: AAA domain; P 96.3 0.0047 1E-07 53.1 4.4 100 158-275 1-112 (143)
424 PRK12723 flagellar biosynthesi 96.3 0.046 9.9E-07 55.2 11.9 24 345-368 173-196 (388)
425 cd01393 recA_like RecA is a b 96.3 0.015 3.3E-07 54.3 8.2 49 154-204 17-71 (226)
426 cd01133 F1-ATPase_beta F1 ATP 96.3 0.0069 1.5E-07 57.7 5.7 90 347-439 70-174 (274)
427 PRK05986 cob(I)alamin adenolsy 96.3 0.011 2.3E-07 53.1 6.6 120 345-468 21-158 (191)
428 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.039 8.4E-07 51.9 10.5 61 411-475 140-206 (254)
429 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.019 4.1E-07 50.3 8.1 118 347-474 26-146 (157)
430 PRK14722 flhF flagellar biosyn 96.3 0.41 8.9E-06 48.0 18.3 86 156-243 137-225 (374)
431 PRK05973 replicative DNA helic 96.3 0.018 3.8E-07 54.0 8.2 116 344-468 62-193 (237)
432 PRK07667 uridine kinase; Provi 96.3 0.0045 9.7E-08 56.5 4.1 38 141-178 2-39 (193)
433 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.051 1.1E-06 51.5 11.5 127 347-475 26-183 (246)
434 PRK00149 dnaA chromosomal repl 96.3 0.019 4E-07 59.8 9.3 72 156-243 148-221 (450)
435 TIGR02238 recomb_DMC1 meiotic 96.3 0.016 3.4E-07 56.9 8.2 66 148-214 88-157 (313)
436 cd01124 KaiC KaiC is a circadi 96.3 0.022 4.7E-07 51.4 8.7 35 348-386 1-35 (187)
437 cd03238 ABC_UvrA The excision 96.3 0.016 3.4E-07 51.9 7.5 112 156-275 21-153 (176)
438 PRK08233 hypothetical protein; 96.3 0.012 2.6E-07 52.8 6.9 24 346-369 3-26 (182)
439 PF06745 KaiC: KaiC; InterPro 96.3 0.003 6.6E-08 59.1 3.0 122 335-466 8-159 (226)
440 TIGR03689 pup_AAA proteasome A 96.3 0.0096 2.1E-07 62.0 6.9 48 132-179 181-239 (512)
441 PF03308 ArgK: ArgK protein; 96.2 0.0072 1.6E-07 56.5 5.2 39 331-369 14-52 (266)
442 PTZ00494 tuzin-like protein; P 96.2 0.18 4E-06 50.8 15.1 166 321-499 369-544 (664)
443 TIGR02324 CP_lyasePhnL phospho 96.2 0.067 1.4E-06 49.9 11.9 64 418-484 157-223 (224)
444 PRK14948 DNA polymerase III su 96.2 0.05 1.1E-06 58.5 12.3 46 132-178 15-60 (620)
445 COG1116 TauB ABC-type nitrate/ 96.2 0.063 1.4E-06 50.0 11.2 125 347-475 30-198 (248)
446 cd03247 ABCC_cytochrome_bd The 96.2 0.0095 2.1E-07 53.5 5.8 23 157-179 29-51 (178)
447 PRK10867 signal recognition pa 96.2 0.048 1E-06 55.8 11.5 24 345-368 99-122 (433)
448 PRK07133 DNA polymerase III su 96.2 0.041 8.9E-07 59.5 11.4 46 132-178 17-62 (725)
449 PF00154 RecA: recA bacterial 96.2 0.016 3.5E-07 56.6 7.6 98 333-439 39-142 (322)
450 PF13604 AAA_30: AAA domain; P 96.2 0.016 3.6E-07 52.9 7.4 23 346-368 18-40 (196)
451 COG2607 Predicted ATPase (AAA+ 96.2 0.032 6.9E-07 51.4 8.9 109 125-258 52-167 (287)
452 COG0470 HolB ATPase involved i 96.2 0.047 1E-06 54.0 11.2 122 134-269 2-147 (325)
453 PRK13538 cytochrome c biogenes 96.2 0.041 8.9E-07 50.6 10.1 57 418-475 137-196 (204)
454 COG1703 ArgK Putative periplas 96.2 0.0066 1.4E-07 57.6 4.7 39 332-370 37-75 (323)
455 PRK14086 dnaA chromosomal repl 96.2 0.026 5.5E-07 59.9 9.6 98 157-270 315-419 (617)
456 PRK06305 DNA polymerase III su 96.2 0.045 9.9E-07 56.7 11.4 46 132-178 16-61 (451)
457 COG4619 ABC-type uncharacteriz 96.2 0.094 2E-06 45.7 11.2 22 347-368 30-51 (223)
458 PRK14722 flhF flagellar biosyn 96.2 0.045 9.8E-07 54.8 10.8 23 346-368 137-159 (374)
459 COG1102 Cmk Cytidylate kinase 96.2 0.0056 1.2E-07 52.7 3.7 22 348-369 2-23 (179)
460 TIGR02858 spore_III_AA stage I 96.2 0.054 1.2E-06 51.9 11.0 128 141-276 97-234 (270)
461 cd03229 ABC_Class3 This class 96.2 0.017 3.7E-07 51.9 7.2 123 347-474 27-167 (178)
462 PRK05917 DNA polymerase III su 96.2 0.18 3.9E-06 48.7 14.5 151 330-495 4-168 (290)
463 cd01120 RecA-like_NTPases RecA 96.1 0.027 5.8E-07 49.2 8.3 40 158-199 1-40 (165)
464 cd03115 SRP The signal recogni 96.1 0.043 9.4E-07 48.9 9.8 21 348-368 2-22 (173)
465 cd01130 VirB11-like_ATPase Typ 96.1 0.011 2.3E-07 53.6 5.8 109 347-469 26-136 (186)
466 PRK07952 DNA replication prote 96.1 0.024 5.2E-07 53.5 8.3 94 142-249 85-180 (244)
467 cd03235 ABC_Metallic_Cations A 96.1 0.051 1.1E-06 50.3 10.4 22 347-368 26-47 (213)
468 TIGR01420 pilT_fam pilus retra 96.1 0.018 3.9E-07 57.5 7.8 113 347-473 123-235 (343)
469 PRK09361 radB DNA repair and r 96.1 0.019 4.1E-07 53.7 7.6 48 154-204 21-68 (225)
470 CHL00176 ftsH cell division pr 96.1 0.024 5.1E-07 61.1 9.0 94 132-243 182-285 (638)
471 PRK05703 flhF flagellar biosyn 96.1 0.12 2.6E-06 53.1 13.8 23 346-368 221-243 (424)
472 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.056 1.2E-06 48.6 10.3 111 348-471 1-117 (183)
473 PRK08451 DNA polymerase III su 96.1 0.079 1.7E-06 55.6 12.6 46 132-178 13-58 (535)
474 PRK15455 PrkA family serine pr 96.1 0.0055 1.2E-07 63.8 4.0 46 133-178 76-125 (644)
475 PF08423 Rad51: Rad51; InterP 96.1 0.016 3.4E-07 55.3 6.9 88 155-243 37-143 (256)
476 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.038 8.2E-07 51.6 9.4 51 334-388 4-54 (224)
477 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0097 2.1E-07 55.1 5.2 120 346-474 29-160 (213)
478 PRK05703 flhF flagellar biosyn 96.1 0.39 8.5E-06 49.4 17.4 22 156-177 221-242 (424)
479 COG0572 Udk Uridine kinase [Nu 96.1 0.012 2.7E-07 53.7 5.7 30 344-375 6-35 (218)
480 PRK12726 flagellar biosynthesi 96.0 0.063 1.4E-06 53.5 11.0 24 345-368 205-228 (407)
481 COG1160 Predicted GTPases [Gen 96.0 0.11 2.3E-06 52.5 12.7 48 324-371 149-203 (444)
482 PRK14974 cell division protein 96.0 0.047 1E-06 54.0 10.2 25 344-368 138-162 (336)
483 TIGR03499 FlhF flagellar biosy 96.0 0.026 5.7E-07 54.7 8.4 88 345-437 193-281 (282)
484 smart00534 MUTSac ATPase domai 96.0 0.0053 1.2E-07 55.6 3.3 117 348-475 1-129 (185)
485 PLN03187 meiotic recombination 96.0 0.024 5.1E-07 56.2 8.1 66 148-214 118-187 (344)
486 COG1117 PstB ABC-type phosphat 96.0 0.04 8.7E-07 49.9 8.7 50 421-475 160-215 (253)
487 TIGR01241 FtsH_fam ATP-depende 96.0 0.028 6.1E-07 59.2 9.2 48 132-179 54-111 (495)
488 TIGR00382 clpX endopeptidase C 96.0 0.026 5.6E-07 57.3 8.5 47 322-368 76-138 (413)
489 cd03232 ABC_PDR_domain2 The pl 96.0 0.042 9.1E-07 50.0 9.2 118 347-469 34-169 (192)
490 COG1136 SalX ABC-type antimicr 96.0 0.036 7.9E-07 51.2 8.7 53 225-277 152-209 (226)
491 TIGR01818 ntrC nitrogen regula 96.0 0.057 1.2E-06 56.4 11.4 160 323-496 134-319 (463)
492 PF13238 AAA_18: AAA domain; P 96.0 0.0055 1.2E-07 51.4 3.1 21 349-369 1-21 (129)
493 PRK06835 DNA replication prote 96.0 0.014 2.9E-07 57.7 6.2 23 157-179 184-206 (329)
494 COG0563 Adk Adenylate kinase a 96.0 0.021 4.5E-07 51.2 6.9 95 348-452 2-102 (178)
495 KOG0062 ATPase component of AB 96.0 0.21 4.6E-06 51.0 14.5 125 344-474 388-545 (582)
496 COG4088 Predicted nucleotide k 96.0 0.037 8E-07 49.7 8.1 22 347-368 2-23 (261)
497 PF01695 IstB_IS21: IstB-like 96.0 0.0044 9.6E-08 55.6 2.5 73 156-244 47-119 (178)
498 COG4608 AppF ABC-type oligopep 96.0 0.021 4.5E-07 53.8 7.0 117 156-276 39-175 (268)
499 PRK13543 cytochrome c biogenes 96.0 0.062 1.4E-06 49.8 10.3 23 347-369 38-60 (214)
500 TIGR00064 ftsY signal recognit 96.0 0.14 3E-06 49.3 12.9 25 344-368 70-94 (272)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-34 Score=307.84 Aligned_cols=290 Identities=19% Similarity=0.274 Sum_probs=219.2
Q ss_pred cccchH-HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--------cChhhHHHHHHHHHHhHHHHHHH
Q 010799 3 AEATIV-PVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEI--------NDVSPKLLNAVSQVQDITDTFRI 73 (501)
Q Consensus 3 a~~~v~-~v~kl~~~l~~e~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~--------~~~~~~l~~~~~~~edllD~~~~ 73 (501)
+++.++ .+.|+.+++.++...+.+..+.+..++..|..++.++++++. .+|.+.+++..|++++.++.+.+
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677 888999999999999999999999999999999999998886 23778899999999999999998
Q ss_pred Hhhhhhhccccc--------cCcchHHHH-------HHHHHHHHHHHHHHHHHHhhhhcccc-ccc---ccccccccccc
Q 010799 74 ENCKRVYLGVIS--------LRSSTVQAR-------FRKKIKELVSGIREESEKMLLEISGK-ITS---AENVDSAKKTG 134 (501)
Q Consensus 74 ~~~~~~~~~~~~--------~~~~~~~~~-------~~~~i~~l~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 134 (501)
+....+...... .+.....+. +.+++-.....++....+..+...+. ..+ ....+......
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 765543322111 111123333 44444444444444333222222121 111 11111122333
Q ss_pred cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccc-cccccceeEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799 135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECET-VKEYFQCRAWVPVPEELERRELVTDILKQVGG 213 (501)
Q Consensus 135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~-v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~ 213 (501)
||.+..++++.+.|.+++. .+++|+||||+||||||+++||+.. ++.+||..+||+||+.|+...++.+|++.++.
T Consensus 161 -VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred -ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 9999999999999998764 8999999999999999999999998 99999999999999999999999999999987
Q ss_pred CCCcC----cchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc-ccCCCCCCCccc
Q 010799 214 SKVEK----QLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC-RNMSFFGGESSF 288 (501)
Q Consensus 214 ~~~~~----~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~-~~~~~l~~~~~~ 288 (501)
..... ...++..|.+.|++|||||||||||+..+|+.++.++|...+||||++|||+++||.. ++. .+.+
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~-----~~~~ 312 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV-----DYPI 312 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC-----Cccc
Confidence 43331 2356899999999999999999999999999999999999999999999999999974 222 2455
Q ss_pred CcceeeeccccC
Q 010799 289 KPKYIAYAASED 300 (501)
Q Consensus 289 ~~~~~~~~~s~~ 300 (501)
+++++....+|.
T Consensus 313 ~v~~L~~~eaW~ 324 (889)
T KOG4658|consen 313 EVECLTPEEAWD 324 (889)
T ss_pred cccccCccccHH
Confidence 555555554444
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=4.2e-25 Score=215.77 Aligned_cols=169 Identities=29% Similarity=0.486 Sum_probs=139.5
Q ss_pred cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799 328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE 407 (501)
Q Consensus 328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~ 407 (501)
||.++++|.+.|....+..++|+|+|+||+|||+||..++++..+..+|+.++| ++++...+...++..++.++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~w--v~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIW--VSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEE--EEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccc--cccccccccccccccccccccccc
Confidence 789999999999876678899999999999999999999996558999999999 999999999999999999999885
Q ss_pred CC--CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCCC
Q 010799 408 VD--EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRP 485 (501)
Q Consensus 408 ~~--~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~~ 485 (501)
.. ...+..+....+.+.+.++++||||||+|+...|+.+...++. ...+++||||||+..++..+......++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~--~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPS--FSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HC--HHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccchhhhccccceeeeeeeccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 42 3567888999999999999999999999999999888888887 6789999999999988877652367999999
Q ss_pred CChHHHHHHHHHhhc
Q 010799 486 LNEEESGKLFQRRLK 500 (501)
Q Consensus 486 L~~~ea~~Lf~~~~~ 500 (501)
|+.++|++||.+.++
T Consensus 157 L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 157 LSEEEALELFKKRAG 171 (287)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred ccccccccccccccc
Confidence 999999999999876
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=9.7e-24 Score=229.69 Aligned_cols=169 Identities=28% Similarity=0.447 Sum_probs=154.2
Q ss_pred eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc-cccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799 326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY-TKKNFPCRAWANVYVSQDFDMRSVFADILRQLT 404 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~-~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~ 404 (501)
||.++.++++...|...+. .+++|+||||+||||||+.++++.. +..+|+.++| |.++..++...+..+|+..++
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iW--V~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIW--VVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEE--EEEcccccHHhHHHHHHHHhc
Confidence 9999999999999976544 8999999999999999999999887 8999999999 999999999999999999888
Q ss_pred cCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh-cCCCCccee
Q 010799 405 QDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS-FSPSIFLHQ 482 (501)
Q Consensus 405 ~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~-~~~~~~~~~ 482 (501)
..... ......+....+.++|..+|+|||+||+|+..+|+.+...+|. ...||+|++|||++.++.. ++ ....++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~--~~~g~KvvlTTRs~~V~~~~m~-~~~~~~ 313 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPS--RENGSKVVLTTRSEEVCGRAMG-VDYPIE 313 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCC--ccCCeEEEEEeccHhhhhcccc-CCcccc
Confidence 84442 2334478899999999999999999999999999999999999 7888999999999999999 65 688999
Q ss_pred CCCCChHHHHHHHHHhhcC
Q 010799 483 LRPLNEEESGKLFQRRLKA 501 (501)
Q Consensus 483 l~~L~~~ea~~Lf~~~~~~ 501 (501)
++.|+.+|||+||++.||.
T Consensus 314 v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred ccccCccccHHHHHHhhcc
Confidence 9999999999999999873
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.90 E-value=4.4e-24 Score=208.59 Aligned_cols=139 Identities=23% Similarity=0.384 Sum_probs=115.5
Q ss_pred chhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Q 010799 138 LNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE 217 (501)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~ 217 (501)
|+.++++|.++|.....+.++|+|+||||+||||||..++++..++.+|+.++||.++...+...+++.|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999998667899999999999999999999998877999999999999999999999999999999877332
Q ss_pred -----CcchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799 218 -----KQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC 276 (501)
Q Consensus 218 -----~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~ 276 (501)
+..+....+++.|+++++||||||||+...|+.+...++....||+||||||+..|+..
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~ 144 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS 144 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccc
Confidence 23446899999999999999999999999999999888888889999999999999864
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1e-19 Score=207.91 Aligned_cols=171 Identities=17% Similarity=0.256 Sum_probs=135.0
Q ss_pred ccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe---CCC-------
Q 010799 320 EEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV---SQD------- 389 (501)
Q Consensus 320 ~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~---~~~------- 389 (501)
...+++|||++.++++..+|....+..++++||||||+||||||+.+|+ ++..+|++.+| +.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vf--v~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVF--IDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEE--eeccccccchhhcccc
Confidence 3457799999999999999976667889999999999999999999999 88889988887 531 111
Q ss_pred ----CC-hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEE
Q 010799 390 ----FD-MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 390 ----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
.+ ...+..+++..+.......... ...+++.+.++|+||||||+|+..+|+.+.....+ .++|++||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~--~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQW--FGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCcc--CCCCcEEEEE
Confidence 01 1233444555443332211111 25677889999999999999999999999887777 7899999999
Q ss_pred eCChHHHhhcCCCCcceeCCCCChHHHHHHHHHhhcC
Q 010799 465 TREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA 501 (501)
Q Consensus 465 tR~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 501 (501)
||++.++..++ ...+|+|+.|+.++|++||+++||.
T Consensus 331 Trd~~vl~~~~-~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 331 TKDKHFLRAHG-IDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred eCcHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHhcC
Confidence 99999988765 6689999999999999999999873
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.3e-18 Score=198.73 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=119.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc---CCC-----------
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV---PEE----------- 197 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v---s~~----------- 197 (501)
..++||++..+++|..+|..+..+.++|+||||||+||||||+.+|+ ++..+|+..+|+.- +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 46799999999999999976666799999999999999999999996 67788999887732 111
Q ss_pred CC-HHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799 198 LE-RRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC 276 (501)
Q Consensus 198 ~~-~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~ 276 (501)
++ ...++.+++.++.......... ...+++.|++||+||||||||+...|+.+.......++||+||||||+.+++..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 11 1235555555553322211111 367888999999999999999999999998877767889999999999999863
Q ss_pred ------ccCCCCCCCcccCcce
Q 010799 277 ------RNMSFFGGESSFKPKY 292 (501)
Q Consensus 277 ------~~~~~l~~~~~~~~~~ 292 (501)
+.++.++.+++|....
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFC 361 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHH
Confidence 3445566666666554
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=9.1e-11 Score=119.92 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=117.5
Q ss_pred cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
+.|+||++++++|...+... +...+.+.|+|++|+|||++++.+++ ..........|-++++....+...++..++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45999999999999998442 34456789999999999999999998 433332222332277777778889999999
Q ss_pred HHhccC-CCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChh------hHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799 401 RQLTQD-EVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPG------AWYDLKRIFSPQASPIGSRVILITREAYVA 471 (501)
Q Consensus 401 ~~l~~~-~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~------~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~ 471 (501)
.++... .+....+.++....+.+.+.. ++.+||||+++... .+..+...+... .+.+..+|.++......
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchh
Confidence 998762 222334567778888887753 56899999998742 233443333331 11133366666654433
Q ss_pred hhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799 472 RSFSP------SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 472 ~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+ ....+.+++++.++..+++..++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 32211 23568999999999999998775
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=2.7e-10 Score=115.20 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=112.6
Q ss_pred cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHH
Q 010799 323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRS 394 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~ 394 (501)
+.|+||++++++|...|.. .+.....+.|+|++|+|||++++.++++ ..... -..+| +++....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~--in~~~~~~~~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVY--VNCQILDTLYQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEE--EECCCCCCHHH
Confidence 4599999999999999853 2344568999999999999999999884 32211 12456 78777777888
Q ss_pred HHHHHHHHhc---cCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCh--hh---HHHHHHh--cCCCCCCCCCEEE
Q 010799 395 VFADILRQLT---QDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSP--GA---WYDLKRI--FSPQASPIGSRVI 462 (501)
Q Consensus 395 ~~~~i~~~l~---~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~--~~---~~~l~~~--l~~~~~~~~~~iI 462 (501)
++..++.++. ...+....+..+....+.+.+. +++++||||+++.. .. +..+... .... .+....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~-~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL-DNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC-CCCeEEEE
Confidence 9999999984 2222123345566666666664 45789999999875 11 2222222 1110 11334555
Q ss_pred EEeCChHHHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799 463 LITREAYVARSFSP------SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 463 iTtR~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.++........+.+ ....+.++|++.++..+++..++
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 55654433222211 13568999999999999998775
No 9
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.16 E-value=4.5e-10 Score=122.85 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=89.8
Q ss_pred cceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|.+..++.+...+... ..+ ..++.++|++|+|||.||+.++. .... ..+. ++++.-.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~~---~~~~--~d~se~~~~--- 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALGV---HLER--FDMSEYMEK--- 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--HhcC---CeEE--EeCchhhhc---
Confidence 46889999999988887531 122 24689999999999999999988 3322 2233 343321110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL 463 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi 463 (501)
..+...++.+......+. ...+.+.+..+ ..+++||+++. .+.++.|+..+.... ...++.+|+
T Consensus 524 -~~~~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 524 -HTVSRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred -ccHHHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 011111111110001111 12223333333 45999999986 455666666554310 023455777
Q ss_pred EeCChH----------------------HHhhcCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799 464 ITREAY----------------------VARSFSP-----SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 464 TtR~~~----------------------~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
||-... +...+.+ -..++.+.+|+.++-.+++...+
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 763210 1111111 24689999999999998887654
No 10
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=3.2e-10 Score=100.84 Aligned_cols=143 Identities=22% Similarity=0.395 Sum_probs=86.5
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChH---HHHHHHHHHhccCCCCCCCCHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMR---SVFADILRQLTQDEVDEESSLDDLES 419 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~ 419 (501)
|++.|.|.+|+|||+++..++........ +...+| ++........ .+...+..++..... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFF--FSLRDISDSNNSRSLADLLFDQLPESIA----PIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEE--EeehhhhhccccchHHHHHHHhhccchh----hhHH---
Confidence 58999999999999999998874433332 234455 5553332221 333333333332211 1111
Q ss_pred HHHHhc-CCceEEEEEcCCCChhh---------HHHHHHhcCCCCCCCCCEEEEEeCChHH---HhhcCCCCcceeCCCC
Q 010799 420 EFTGIL-YEKRYLVVLDDVHSPGA---------WYDLKRIFSPQASPIGSRVILITREAYV---ARSFSPSIFLHQLRPL 486 (501)
Q Consensus 420 ~l~~~l-~~~r~LlVlDnv~~~~~---------~~~l~~~l~~~~~~~~~~iIiTtR~~~~---~~~~~~~~~~~~l~~L 486 (501)
.+...+ ...+++||||+++.... +..+...+......+++++|||+|.... ..... ....+++++|
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~-~~~~~~l~~~ 150 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK-QAQILELEPF 150 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC-CCcEEEECCC
Confidence 222222 45799999999987322 2223332222113668999999998776 22332 4468999999
Q ss_pred ChHHHHHHHHHhh
Q 010799 487 NEEESGKLFQRRL 499 (501)
Q Consensus 487 ~~~ea~~Lf~~~~ 499 (501)
+.++..+++.+..
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.3e-09 Score=105.54 Aligned_cols=124 Identities=21% Similarity=0.306 Sum_probs=83.8
Q ss_pred CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHH-
Q 010799 343 SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEF- 421 (501)
Q Consensus 343 ~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l- 421 (501)
++......+|||+|+||||||+.+.. .....|.. +++ ..+-.. +..++++.-
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sA--v~~gvk------------------dlr~i~e~a~ 97 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSA--VTSGVK------------------DLREIIEEAR 97 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----ecc--ccccHH------------------HHHHHHHHHH
Confidence 35667888999999999999999988 56665532 222 111111 122222222
Q ss_pred HHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChHH--HhhcCCCCcceeCCCCChHHHHHHH
Q 010799 422 TGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAYV--ARSFSPSIFLHQLRPLNEEESGKLF 495 (501)
Q Consensus 422 ~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf 495 (501)
+....+++.+|++|++.. ..+++.|++.+.+ |.-|+| ||-|+.. -..+.+...++.+++|+.++-.+++
T Consensus 98 ~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~-----G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN-----GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred HHHhcCCceEEEEehhhhcChhhhhhhhhhhcC-----CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence 223347899999999974 6777887776666 777777 6666642 2222236789999999999999999
Q ss_pred HHh
Q 010799 496 QRR 498 (501)
Q Consensus 496 ~~~ 498 (501)
.+.
T Consensus 173 ~ra 175 (436)
T COG2256 173 KRA 175 (436)
T ss_pred HHH
Confidence 873
No 12
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.00 E-value=2e-08 Score=110.32 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=88.6
Q ss_pred ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++.|.+...+.|.+.+.. +-..++-+.++|++|+|||++|+.+++ .....| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-------i~v~~~- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-------IAVRGP- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-------EEEehH-
Confidence 35678888887777766531 112346789999999999999999998 433332 333211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--------------hhHHHHHHhcCCCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--------------GAWYDLKRIFSPQASP 456 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--------------~~~~~l~~~l~~~~~~ 456 (501)
+++.... ..+...+...+...-...+.+|+||+++.. .....++..+......
T Consensus 522 -------~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -------EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -------HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1111111 112223333333333456799999998642 1123344444431123
Q ss_pred CCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..||.||.... +...+- .....+.++..+.++-.++|..+.
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 3444555664443 222221 145688999999999999887553
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=3.9e-09 Score=99.37 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH-----
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI----- 399 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i----- 399 (501)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+ .....-...+| +......+ ......+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y--~~~~~~~~-~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVY--IDFLEESN-ESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCH--HCCTTBSH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEE--Eecccchh-hhHHHHHHHHHH
Confidence 799999999999998642 347899999999999999999988 44332223444 33322222 1122222
Q ss_pred -----HHHhccCCCC---------CCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh-----------hHHHHHHhcCC
Q 010799 400 -----LRQLTQDEVD---------EESSLDDLESEFTGILY--EKRYLVVLDDVHSPG-----------AWYDLKRIFSP 452 (501)
Q Consensus 400 -----~~~l~~~~~~---------~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~-----------~~~~l~~~l~~ 452 (501)
...+...... ...........+.+.+. +++++|||||++... .+..+...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1112111110 01112222333333332 235999999987754 11222233223
Q ss_pred CCCCCCCEEEEEeCChHHHhh-------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 453 QASPIGSRVILITREAYVARS-------FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 453 ~~~~~~~~iIiTtR~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.....+++++........ .-.....+.+++|+.+++++++....
T Consensus 154 ---~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 154 ---QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred ---cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence 344455566555544433 11134459999999999999998753
No 14
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.94 E-value=1.4e-08 Score=109.98 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred ceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHH
Q 010799 324 AVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~ 396 (501)
.++|.++.++.+...+... ..+ ...+.++|++|+|||.+|+.++. .....| +. ++++.-.. ..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~~~---i~--id~se~~~-~~-- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGIEL---LR--FDMSEYME-RH-- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCCCc---EE--eechhhcc-cc--
Confidence 5899999999998887521 122 34789999999999999999988 332222 23 33332111 00
Q ss_pred HHHHHHhccCCCC-CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799 397 ADILRQLTQDEVD-EESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL 463 (501)
Q Consensus 397 ~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi 463 (501)
. ...+.+..+. ..... ...+.+.+..+ ..+|+||+++. .+.++.|+..+.... ...++-+|+
T Consensus 529 -~-~~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 529 -T-VSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred -c-HHHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 1 1222221111 01111 11223333333 46999999986 455666666554300 012444777
Q ss_pred EeCCh----------------------HHHhhcCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799 464 ITREA----------------------YVARSFSP-----SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 464 TtR~~----------------------~~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
||-.. .+...+.+ ...++.+.+|+.++..++....+
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHH
Confidence 76511 01111111 24588899999999888776543
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=2.3e-08 Score=106.21 Aligned_cols=175 Identities=16% Similarity=0.186 Sum_probs=111.2
Q ss_pred cceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccc---cCCc--cceeEEEEeCCCCChHH
Q 010799 323 TAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTK---KNFP--CRAWANVYVSQDFDMRS 394 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~---~~f~--~~~w~~v~~~~~~~~~~ 394 (501)
+.+.||++++++|...|.. +.....++.|+|++|+|||++++.++...... .... .+++ |++....+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY--INCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE--INGMNVVHPNA 832 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE--EeCCccCCHHH
Confidence 5689999999999998853 23333577899999999999999998743211 1122 1345 77777778888
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC--c-eEEEEEcCCCChh--hHHHHHHhcCCCCCCCCCEEEE--EeCC
Q 010799 395 VFADILRQLTQDEVDEESSLDDLESEFTGILYE--K-RYLVVLDDVHSPG--AWYDLKRIFSPQASPIGSRVIL--ITRE 467 (501)
Q Consensus 395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~-r~LlVlDnv~~~~--~~~~l~~~l~~~~~~~~~~iIi--TtR~ 467 (501)
++..|+.++....+....+..+....+...+.. + ..+||||+++... ..+.|...+.+. ...+++|++ +|..
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~-~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP-TKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh-hccCCeEEEEEecCc
Confidence 999999988554443333444556666655532 2 4589999998632 334444433331 233555544 3332
Q ss_pred hH----HHhhcCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799 468 AY----VARSFSP--SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 468 ~~----~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
-. +...+.+ ....+..+|++.++-.+++..++.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 11 1112211 223467899999999999998874
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.4e-07 Score=94.46 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=91.5
Q ss_pred cceeecchhHHHHHHHhhcCC-----------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 323 TAVVSMENDILKLAKLTLNSS-----------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
+++-|..+..+-|.+.+.-++ .-..-|.++|++|+|||.||..++. ...- -| +++..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~--~~~~-----~f--isvKGP-- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIAS--NSNL-----RF--ISVKGP-- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHh--hCCe-----eE--EEecCH--
Confidence 456677777777777664432 1224699999999999999999887 2222 33 777654
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIG 458 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~ 458 (501)
+++...-+. +.+...+.+.+.-.-++|+|+||++++. ...+.++..+.-...-.|
T Consensus 736 ------ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 736 ------ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred ------HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 344443333 3455566666666779999999999872 234555555544212234
Q ss_pred CEEEE-EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799 459 SRVIL-ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 459 ~~iIi-TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.-|+- |||-..+...+-+ -.+.+.-+..+..+-.+.|...
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~l 847 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVL 847 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHH
Confidence 44444 5665554443322 2334445556666666666543
No 17
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.83 E-value=1.8e-07 Score=103.76 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=37.0
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++||+++.+.+++.|.....+ -+.++|.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999865422 345999999999999988864
No 18
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=2.4e-08 Score=93.77 Aligned_cols=147 Identities=20% Similarity=0.198 Sum_probs=84.8
Q ss_pred cccceeecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
..++|+|-+... -+..+... .....+.+.|||++|+|||+|+..+++ ........+.| +++..... ..
T Consensus 14 ~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y--~~~~~~~~---~~--- 82 (229)
T PRK06893 14 TLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIY--IPLSKSQY---FS--- 82 (229)
T ss_pred cccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEE--eeHHHhhh---hh---
Confidence 456788655432 12211111 122346789999999999999999998 44444445566 55431100 00
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHH-HHHHhcCCCCCCCCCEEEE-EeCC-------
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWY-DLKRIFSPQASPIGSRVIL-ITRE------- 467 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~-~l~~~l~~~~~~~~~~iIi-TtR~------- 467 (501)
..+.+.+. +.-+|+|||++.. ..|+ .+...+... ...+..+|+ |+..
T Consensus 83 -------------------~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~-~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 83 -------------------PAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRI-KEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred -------------------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHH-HHcCCcEEEEeCCCChHHccc
Confidence 01111111 2348999999862 3333 344434331 223555654 4443
Q ss_pred --hHHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 468 --AYVARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 468 --~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+.+...+. .+.++++++++.++.+++|++.+.
T Consensus 142 ~~~~L~sRl~-~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 142 KLPDLASRLT-WGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred cchhHHHHHh-cCCeeeCCCCCHHHHHHHHHHHHH
Confidence 34555544 567999999999999999998764
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.1e-07 Score=94.72 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=118.2
Q ss_pred eeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc--ceeEEEEeCCCCChHHHHHHHH
Q 010799 325 VVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC--RAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~--~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
+.+|+++++++...|.. .+..+..+.|+|++|+|||+.++.++. ++...... +++ |+|....+...++..|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~y--INc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVY--INCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEE--EeeeeCCCHHHHHHHHH
Confidence 88999999999988753 234445699999999999999999998 55554432 466 99999999999999999
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChhhH--HHHHHhcCCCCCCCCCEE--EEEeCChHHHhhc
Q 010799 401 RQLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPGAW--YDLKRIFSPQASPIGSRV--ILITREAYVARSF 474 (501)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~~~--~~l~~~l~~~~~~~~~~i--IiTtR~~~~~~~~ 474 (501)
.++..... ...+..+..+.+.+.+.. +.+++|||+++....- +.+...+... ....++| |..+-+......+
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~-~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP-GENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc-cccceeEEEEEEeccHHHHHHh
Confidence 99973222 356677788888888865 5789999999873221 3333333331 1113433 3334333322222
Q ss_pred CC------CCcceeCCCCChHHHHHHHHHhhc
Q 010799 475 SP------SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 475 ~~------~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
.+ ....+..+|.+.+|-.+.+..++.
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 21 234588999999999999988864
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80 E-value=2.3e-07 Score=89.66 Aligned_cols=145 Identities=20% Similarity=0.299 Sum_probs=87.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
...++|+|++|+||||+++.+++.... ..+ ..+| + +....+..+++..++..++.+.. ..+.......+..++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~--~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAK--L-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEee--e-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHH
Confidence 468999999999999999999884221 111 1122 2 23345667888888888866543 233333344444333
Q ss_pred -----CCceEEEEEcCCCCh--hhHHHHHHhcCCCC--CCCCCEEEEEeCChHHHhhcC--------C-CCcceeCCCCC
Q 010799 426 -----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQA--SPIGSRVILITREAYVARSFS--------P-SIFLHQLRPLN 487 (501)
Q Consensus 426 -----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~--~~~~~~iIiTtR~~~~~~~~~--------~-~~~~~~l~~L~ 487 (501)
.+++.+||+|+++.. ..++.+.. +.... ......|++|.... ....+. + ....+.+++|+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 567889999999874 33444432 22210 12223455665433 221111 0 23467899999
Q ss_pred hHHHHHHHHHhh
Q 010799 488 EEESGKLFQRRL 499 (501)
Q Consensus 488 ~~ea~~Lf~~~~ 499 (501)
.+|..+++..++
T Consensus 194 ~~e~~~~l~~~l 205 (269)
T TIGR03015 194 REETREYIEHRL 205 (269)
T ss_pred HHHHHHHHHHHH
Confidence 999999988664
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=4.4e-08 Score=100.36 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=89.2
Q ss_pred ccceeecchhHHH---HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSMENDILK---LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~~~~~~---l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.++|+|++..+.. |..++.. ...+.+.|+|++|+||||||+.+++ .....|. . ++... .-...+.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~~---~--l~a~~--~~~~~ir- 78 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAG--ATDAPFE---A--LSAVT--SGVKDLR- 78 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---E--Eeccc--ccHHHHH-
Confidence 4679999988766 7777744 3456788999999999999999988 4333331 1 22221 1111111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChH--HH
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAY--VA 471 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~--~~ 471 (501)
.+.+...... .+++.+|+||+++. ....+.|+..+.. +..++| ||.+.. +.
T Consensus 79 -----------------~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~-----~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 79 -----------------EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED-----GTITLIGATTENPSFEVN 136 (413)
T ss_pred -----------------HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc-----CcEEEEEeCCCChhhhcc
Confidence 1222222211 35678999999986 3456666666554 444554 344332 22
Q ss_pred hhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 472 RSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 472 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+.+...++.+.+++.++..++|.+.+
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 2222245789999999999999998754
No 22
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.9e-06 Score=85.52 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=80.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
.+.-|.+|||+|+|||-||+++++ .....| +++..+ +++...-+.. ..-+.+.+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-------isVKGP--------ELlNkYVGES------ErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-------ISVKGP--------ELLNKYVGES------ERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-------EeecCH--------HHHHHHhhhH------HHHHHHHHHHh
Confidence 456799999999999999999999 555555 777554 3333333222 22223333344
Q ss_pred cCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCC
Q 010799 425 LYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLN 487 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~ 487 (501)
-.+-+|+|+||+++.. ...+.|+--+.-...-.|.-||-.|-.+. +...+-. -...+-|+..+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3456999999999861 22344444433310133455555444333 3333322 45688888889
Q ss_pred hHHHHHHHHHhhc
Q 010799 488 EEESGKLFQRRLK 500 (501)
Q Consensus 488 ~~ea~~Lf~~~~~ 500 (501)
.+|-.++++....
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9998888876643
No 23
>PF13173 AAA_14: AAA domain
Probab=98.74 E-value=4.4e-08 Score=83.23 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=80.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
.+++.|.|+.|+|||||+++++.+ .. .....++ +++......... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~y--i~~~~~~~~~~~-----------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILY--INFDDPRDRRLA-----------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-cccccee--eccCCHHHHHHh-----------------hhh-hHHHHHHhh
Confidence 368999999999999999999873 22 2233455 554332111000 000 223334443
Q ss_pred CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh-----cCCCCcceeCCCCChHH
Q 010799 426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS-----FSPSIFLHQLRPLNEEE 490 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~-----~~~~~~~~~l~~L~~~e 490 (501)
..++.+|+||+++...+|......+.+ ..+..+|++|+.+...... ..+....+++.||+..|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d--~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVD--NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHH--hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 346789999999999899988888888 5677899999988765533 11144578999999876
No 24
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=2.2e-08 Score=85.34 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=79.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccC-----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKN-----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESE 420 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 420 (501)
.+++.|+|++|+|||+++..++. ..... -..++| +.+....+...+...++..+...... ..+..++.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIY--VNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEE--EEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEE--EEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 47899999999999999999988 33321 234568 88877779999999999999988763 4567788888
Q ss_pred HHHhcCCce-EEEEEcCCCCh-h--hHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 421 FTGILYEKR-YLVVLDDVHSP-G--AWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 421 l~~~l~~~r-~LlVlDnv~~~-~--~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
+.+.+...+ .+||+|+++.. . .++.+.. +.+ ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC---SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh---CCCCeEEEEECh
Confidence 888887654 59999999875 2 2233322 222 567788887764
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.69 E-value=1.6e-07 Score=96.03 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=93.0
Q ss_pred cccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799 131 KKTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL 208 (501)
Q Consensus 131 ~~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~ 208 (501)
.+..++||+++.++|...|... +.....+-|+|.+|+|||++++.++++.......-..++|......+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 3567999999999999998542 22345577999999999999999997543222223345565566667889999999
Q ss_pred HHhcCCCCc----CcchHHHHHHHHcc--CCeEEEEEecCCChh------HHHHHhhcCCCCCCCcE--EEEEeccccch
Q 010799 209 KQVGGSKVE----KQLDPQKKLRKLFT--ENRYLVVIINARTPD------IWDILKYLFPNSSNGSR--VILSFQEADAA 274 (501)
Q Consensus 209 ~~~~~~~~~----~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--iivTtr~~~va 274 (501)
+++...... ...+....+.+.++ ++..+||||+++.-. .+..+...+.. ..+++ +|.++...++.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 998752211 12334566666664 456889999997532 23333322222 23444 66776666554
Q ss_pred h
Q 010799 275 R 275 (501)
Q Consensus 275 ~ 275 (501)
.
T Consensus 187 ~ 187 (394)
T PRK00411 187 Y 187 (394)
T ss_pred h
Confidence 3
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.67 E-value=3.6e-08 Score=97.07 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=86.5
Q ss_pred ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
..+|+|+++.++.|..++.. .......+.++|++|+|||+||+.+++ .....+ .. ++....... ..+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~--~~~~~~~~~-~~l~~ 74 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KI--TSGPALEKP-GDLAA 74 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--eccchhcCc-hhHHH
Confidence 46799999999999988842 123456789999999999999999988 433222 11 221111111 11222
Q ss_pred HHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 399 ILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 399 i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
.+..+....-. +..+ ......+...+.+.+..+|+++..+...+.. . ..+.+-|..||+...+...
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~--~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL------D--LPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred HHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee------c--CCCeEEEEecCCccccCHH
Confidence 22222111100 0000 1112233333334444444444333222111 1 1234555667776544443
Q ss_pred cCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799 474 FSP-SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 474 ~~~-~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
..+ ....+.+++++.++..+++.+.++
T Consensus 146 l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 146 LRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred HHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 221 235789999999999999987764
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=2.8e-07 Score=92.11 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=93.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-Cc-cceeEEEEeCCCCChHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FP-CRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~-~~~w~~v~~~~~~~~~~~~~~i 399 (501)
..+|+|++..++.|..++..+ ..+.+.++|++|+|||++|+.+++ ..... +. ..+. ++++.... .....+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~--i~~~~~~~--~~~~~~ 85 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTE--FNVADFFD--QGKKYL 85 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEE--echhhhhh--cchhhh
Confidence 467999999999999988543 335688999999999999999887 33222 11 1223 44322110 000000
Q ss_pred H------HHhccCCCCCCCCHHH---HHHHHHHhc--CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 400 L------RQLTQDEVDEESSLDD---LESEFTGIL--YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 400 ~------~~l~~~~~~~~~~~~~---~~~~l~~~l--~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
. ..+...........+. +......+. ...+-+||+||++.. .....+...+.. ....+++|+||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--YSRTCRFIIATR 163 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--ccCCCeEEEEeC
Confidence 0 0000000000001111 111222222 133458999999864 334556665555 445677888775
Q ss_pred Ch-HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 467 EA-YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 467 ~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+. .+...+.+....+.+.+++.++..+++.+.+
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 43 2222233345688999999999888887653
No 28
>PTZ00202 tuzin; Provisional
Probab=98.66 E-value=1.3e-06 Score=86.72 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=103.2
Q ss_pred cccceeecchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
...+|+||+.++..|...|.+.+ ..+++++|.|++|+|||||++.+... .. +. ..+ ++ ..+..+++..+
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~-qL~--vN---prg~eElLr~L 329 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP-AVF--VD---VRGTEDTLRSV 329 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce-EEE--EC---CCCHHHHHHHH
Confidence 45689999999999999996433 33469999999999999999998873 22 11 222 22 22679999999
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcC------CceEEEEE--cCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILY------EKRYLVVL--DDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYV 470 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~------~~r~LlVl--Dnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~ 470 (501)
+.+|+.+.. ....++...+.+.+. +++.+||+ -+-.+. ...++... |-. ...-|+|++----+.+
T Consensus 330 L~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~--drr~ch~v~evplesl 403 (550)
T PTZ00202 330 VKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LAC--DRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHc--cchhheeeeeehHhhc
Confidence 999997432 233445555555442 44555554 333332 22222222 222 2345778876554432
Q ss_pred Hhh--cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 471 ARS--FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 471 ~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.-. .-+.-..|.+++++.++|.++-...+
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 221 11244588999999999999877654
No 29
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=2.8e-07 Score=97.53 Aligned_cols=166 Identities=14% Similarity=0.212 Sum_probs=100.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.++++||.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+.+.......+.. ..+.....+..+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---------~PCG~C~sCr~I~ 83 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---------QPCGVCRACREID 83 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---------CCCcccHHHHHHh
Confidence 3578999999999999998543 23457789999999999999988874321111110 0111111111111
Q ss_pred HH-----hccCCCCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799 401 RQ-----LTQDEVDEESSLDDLESEFTGIL----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA- 468 (501)
Q Consensus 401 ~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~- 468 (501)
.. +..+.. .....+++...+.... .++.-++|||+++.. ..++.|+..+.. ...++++|+||.+.
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE--PP~~v~FILaTtd~~ 160 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE--PPPHVKFILATTDPQ 160 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh--cCCCeEEEEEECChh
Confidence 10 000000 1112333333222211 234558889999874 447888888877 56678888877764
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+.+.-..+.+.+++.++..+.|.+.+
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 3433333355689999999999998887654
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.65 E-value=1.5e-07 Score=90.01 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=90.3
Q ss_pred cceeecchhHH---HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 323 TAVVSMENDIL---KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 323 ~~fvGR~~~~~---~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
.+.||.+..+. .|.+++. .++.+.+.+||++|+|||+||+.+.. ..+.+ ...| |..+-...-..-++++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~--tsk~~--Syrf--velSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIAS--TSKKH--SYRF--VELSATNAKTNDVRDI 209 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHh--hcCCC--ceEE--EEEeccccchHHHHHH
Confidence 44555443332 2344443 35667899999999999999999987 33332 1345 6554443333333444
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChHHH---h
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAYVA---R 472 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~~~---~ 472 (501)
.++-... ..+..+|.+|++|++.. ..+.+.|++ . -..|.-++| ||.++... .
T Consensus 210 fe~aq~~----------------~~l~krkTilFiDEiHRFNksQQD~fLP---~--VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 210 FEQAQNE----------------KSLTKRKTILFIDEIHRFNKSQQDTFLP---H--VENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHH----------------HhhhcceeEEEeHHhhhhhhhhhhcccc---e--eccCceEEEecccCCCccchhHH
Confidence 3332211 12346789999999975 445555544 4 344777776 77766522 2
Q ss_pred hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 SFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.++ .-.++-|++|..++-..++++.+
T Consensus 269 LlS-RC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 269 LLS-RCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHh-ccceeEeccCCHHHHHHHHHHHH
Confidence 222 55689999999999999888743
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=5.8e-07 Score=90.46 Aligned_cols=166 Identities=13% Similarity=0.228 Sum_probs=97.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+...+.|.+.+..+ .-++.+.++|++|+||||+|+.+++.......+.. .++.......++.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~~~ 83 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKEIE 83 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHHHh
Confidence 3477999999999999988643 33467899999999999999999873221111100 0000001111111
Q ss_pred HHhccC----CCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799 401 RQLTQD----EVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA- 468 (501)
Q Consensus 401 ~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~- 468 (501)
...... ........++.. .+.+.+ .+++-++|+|+++.. ..++.++..+.. .+..+++|++|.+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--PPQHIKFILATTDVE 160 (363)
T ss_pred cCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc--CCCCeEEEEEcCChH
Confidence 110000 000001122221 121221 234569999999874 357788888877 56677777766543
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+.+....+++.+++.++..+.+.+.+
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence 3443433355789999999999988877643
No 32
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=8e-08 Score=87.08 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=33.6
Q ss_pred ceeecchhHHHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799 324 AVVSMENDILKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN 375 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~ 375 (501)
+|+||++++++|...+. ......+.+.|+|++|+|||+|.++++. .....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 48999999999999993 2334568999999999999999999888 44443
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=4.7e-07 Score=102.73 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=101.5
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeC-CCCChHHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS-QDFDMRSVFADILR 401 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~-~~~~~~~~~~~i~~ 401 (501)
.++|-|..-++.|.. ....+++.|.|++|.||||++..+.. . ++.+.| +++. .+.++......++.
T Consensus 14 ~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w--~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGW--YSLDESDNQPERFASYLIA 80 (903)
T ss_pred cccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEE--EecCcccCCHHHHHHHHHH
Confidence 456777766665543 24568999999999999999999876 2 226889 9885 44466666667666
Q ss_pred HhccCCCC------------CCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh--hHH-HHHHhcCCCCCCCCCEEEEE
Q 010799 402 QLTQDEVD------------EESSLDDLESEFTGILY--EKRYLVVLDDVHSPG--AWY-DLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 402 ~l~~~~~~------------~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~--~~~-~l~~~l~~~~~~~~~~iIiT 464 (501)
.+...... ...+.......+...+. ..+++|||||+...+ ... .+...+.. ..++.++|||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~--~~~~~~lv~~ 158 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH--QPENLTLVVL 158 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh--CCCCeEEEEE
Confidence 66422111 01222333443433333 578999999997642 222 33333333 4557889999
Q ss_pred eCChHHHh--hcCCCCcceeCC----CCChHHHHHHHHHhhc
Q 010799 465 TREAYVAR--SFSPSIFLHQLR----PLNEEESGKLFQRRLK 500 (501)
Q Consensus 465 tR~~~~~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~ 500 (501)
||...-.. ..........+. +|+.+|+.+||....+
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~ 200 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS 200 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence 99842111 110023355666 9999999999976543
No 34
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=5.2e-07 Score=77.91 Aligned_cols=125 Identities=20% Similarity=0.096 Sum_probs=71.2
Q ss_pred eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhcc
Q 010799 326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQ 405 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~ 405 (501)
+|++..+..+...+... ..+.+.|+|++|+|||++++.+++ .....-..+++ +.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLY--LNASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEE--EehhhhhhhhHHHHHhhhh---
Confidence 37888889998888542 346899999999999999999998 33322233445 5543322211111000000
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCC-C---CCCCEEEEEeCChH
Q 010799 406 DEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQA-S---PIGSRVILITREAY 469 (501)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~-~---~~~~~iIiTtR~~~ 469 (501)
............++.+|++||++.. .....+...+.... . ..+..+|+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112222346789999999863 22333444333310 1 36788888887653
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.60 E-value=2.4e-07 Score=92.09 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=40.3
Q ss_pred cccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+|+|+++.++.+..++.. .+...+.+.|+|++|+|||+||+.+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence 357899999999999888743 234456889999999999999999998
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.8e-06 Score=88.97 Aligned_cols=154 Identities=13% Similarity=0.106 Sum_probs=93.4
Q ss_pred ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
-+++-|-++...+|.+.+.. +-..++-|.+|||||+|||++|+.+++ ...-.| ++++.+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-------lsvkgp- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-------LSVKGP- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-------eeccCH-
Confidence 35566777777777655432 225668999999999999999999999 444444 555432
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPI 457 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~ 457 (501)
++..... ..+...+.+.+...=+.-+++|.||+++.. ..+..|+..+.- ...
T Consensus 503 -------EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG--~e~ 567 (693)
T KOG0730|consen 503 -------ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG--LEA 567 (693)
T ss_pred -------HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc--ccc
Confidence 2222222 223334444444444455799999999862 112333333333 222
Q ss_pred CCEEEE---EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799 458 GSRVIL---ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 458 ~~~iIi---TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
...|+| |.|-..+...+-+ -..++.+++.+.+.-.++|+.++.
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 223333 4555555444433 467899999999999999988764
No 37
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.58 E-value=7.6e-08 Score=90.81 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=62.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC--CCHHHHHHHHH-----HHhcCCCCcCcc---hHHHH
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE--LERRELVTDIL-----KQVGGSKVEKQL---DPQKK 225 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~~i~-----~~~~~~~~~~~~---~~~~~ 225 (501)
-..++|+|.+|+|||||++.+|++.... +|+..+|++++++ ++..++++.+. .+++.+...... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999876655 9999999998777 89999999993 333321111000 11222
Q ss_pred HHHH-ccCCeEEEEEecCCC
Q 010799 226 LRKL-FTENRYLVVIINART 244 (501)
Q Consensus 226 l~~~-l~~kr~LlVlDdv~~ 244 (501)
.... -.+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 358999999999854
No 38
>PF05729 NACHT: NACHT domain
Probab=98.58 E-value=1e-07 Score=84.60 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=67.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHH---HHHHHHHHHhcCCCCcCcchHHHHHHHH
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERR---ELVTDILKQVGGSKVEKQLDPQKKLRKL 229 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~l~~~ 229 (501)
+++.|+|.+|+||||+++.+...-.-... |...+|++........ .+...+..+..... ......+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence 47899999999999999998864333322 4566677665543332 34444444433221 1111122222
Q ss_pred -ccCCeEEEEEecCCChhH---------HHH-HhhcCCC-CCCCcEEEEEeccccchh
Q 010799 230 -FTENRYLVVIINARTPDI---------WDI-LKYLFPN-SSNGSRVILSFQEADAAR 275 (501)
Q Consensus 230 -l~~kr~LlVlDdv~~~~~---------~~~-l~~~~~~-~~~gs~iivTtr~~~va~ 275 (501)
.+.++++||||++..... +.. +...++. ..+++++|||+|......
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~ 134 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD 134 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH
Confidence 267899999999754211 222 2233332 256899999999887744
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.57 E-value=4.2e-07 Score=98.19 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=88.4
Q ss_pred cccceeecchhHH---HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799 321 EVTAVVSMENDIL---KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 321 ~~~~fvGR~~~~~---~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
..++|+|.+..+. .|.+.+.. .+...+.|+|++|+||||||+.+++ .....|. . +++.. ....+
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~--lna~~-~~i~d--- 92 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---S--LNAVL-AGVKD--- 92 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---e--ehhhh-hhhHH---
Confidence 3577999998884 56666643 3456789999999999999999998 4444441 1 22211 00000
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhc--CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEE--eCChH--
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGIL--YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILI--TREAY-- 469 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiT--tR~~~-- 469 (501)
..+......+.+ .+++.+|+||+++. ...++.|...+.. +..++|+ |.+..
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~-----g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN-----GTITLIGATTENPYFE 151 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC-----ceEEEEEecCCChHhh
Confidence 111122222222 13567999999975 4556666665444 5555553 34432
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+.....+...++.+++|+.++...++.+.+
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 222222245689999999999999988754
No 40
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.57 E-value=5.5e-07 Score=90.81 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=90.3
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++.|+++.+++|.+.+... -..++.+.|+|++|+|||++|+.+++ .....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-------~~v~~-- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-------IRVVG-- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-------Eecch--
Confidence 467999999999998877421 12346799999999999999999998 444333 33221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
..+ ....... ....+...+...-...+.+|+||+++.. ..+..++..+....
T Consensus 190 --~~l----~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SEL----VRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHH----HHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 1111100 0111112222222345789999998753 11223333332210
Q ss_pred CCCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..||.||..... ...+. .....+.++.++.++..++|..++
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 2346678888765431 11111 134678999999999999998765
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=3.8e-07 Score=85.61 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=83.4
Q ss_pred ccceee--cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 322 VTAVVS--MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fvG--R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
.++|++ ....++.+.+++.. ...+.+.|+|++|+|||+||+.+++ ..........+ +++..-.+ ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~--i~~~~~~~------~~ 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIY--LPLAELAQ------AD 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEE--EeHHHHHH------hH
Confidence 345553 34467777776532 3457899999999999999999987 43333333444 55432110 00
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh---h-HHHHHHhcCCCCCCCCCEEEEEeCChH------
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG---A-WYDLKRIFSPQASPIGSRVILITREAY------ 469 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~---~-~~~l~~~l~~~~~~~~~~iIiTtR~~~------ 469 (501)
. .+...+.. .-+|||||++... . ...+...+... ...+..+|+||+...
T Consensus 82 ---------------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~-~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 82 ---------------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRV-REAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred ---------------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHH-HHcCCeEEEECCCChHHCCcc
Confidence 0 01111222 2389999998642 2 34444433321 123457888887532
Q ss_pred ---HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 ---VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+. ....+++++++.++...++...
T Consensus 141 ~~~L~~r~~-~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 141 LPDLRTRLA-WGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred cHHHHHHHh-cCeeEecCCCCHHHHHHHHHHH
Confidence 122221 2467999999999999888764
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.5e-07 Score=97.88 Aligned_cols=169 Identities=20% Similarity=0.187 Sum_probs=98.2
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
..++++|.+.....|..++..+ .-.+.+.++|++|+||||+|+.+++.......+...+| .+.+. ..+........
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg--~C~sc-~~i~~~~h~dv 87 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG--ECESC-LAVRRGAHPDV 87 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC--cChhh-HHHhcCCCCce
Confidence 3477999999999999888653 23356799999999999999999875432222222233 21100 00000000000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHh
Q 010799 401 RQLTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVAR 472 (501)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~ 472 (501)
..+... .....+.+. .+.+.+ .+++-++|||+++. ...++.|+..+.. ....+.+|++|.. ..+..
T Consensus 88 ~el~~~---~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 88 LEIDAA---SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE--PPEHVIFILATTEPEKMPP 161 (504)
T ss_pred EEeccc---ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh--CCCCEEEEEEcCChhhCCh
Confidence 000000 011222221 122222 24566899999986 3557888888877 4556666665543 34433
Q ss_pred hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 SFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+.+....+++.+++.++..+.+.+.+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 343355689999999999999887754
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.1e-06 Score=90.67 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=93.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
..++++|.+.....|...+..+ .-++.+.++|++|+||||+|+.+++......... + .++........+.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~------~pc~~c~~c~~i~ 81 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---V------EPCNECRACRSID 81 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C------CCCcccHHHHHHh
Confidence 3577999999888888877543 2335689999999999999999887321111000 0 0000000001110
Q ss_pred H-------HhccCCCCCCCCHHHHHHHHHHh-----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 401 R-------QLTQDEVDEESSLDDLESEFTGI-----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 401 ~-------~l~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
. .+... .....+++. .+.+. ..+++-++|+|+++. ...++.|+..+.. .+..+.+|++|.
T Consensus 82 ~g~~~dv~el~aa---~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~--p~~~vv~Ilatt 155 (472)
T PRK14962 82 EGTFMDVIELDAA---SNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE--PPSHVVFVLATT 155 (472)
T ss_pred cCCCCccEEEeCc---ccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh--CCCcEEEEEEeC
Confidence 0 00000 011122221 12222 224567999999986 3456777777776 444555555544
Q ss_pred C-hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 467 E-AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 467 ~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+ ..+...+.+...++++.+++.++....+.+.+
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 4 34544444466789999999999888887654
No 44
>PRK08727 hypothetical protein; Validated
Probab=98.56 E-value=6e-07 Score=84.51 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=84.2
Q ss_pred cccceeecchh-HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMEND-ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~-~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
.+++|++.... +..+..+..+ .....+.|+|++|+|||.|+..+++ ........+.| +++.. ....+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y--~~~~~------~~~~~ 84 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAY--LPLQA------AAGRL 84 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EeHHH------hhhhH
Confidence 45677766544 3323333222 2335699999999999999999988 44443334455 54321 11000
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCChH------
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREAY------ 469 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~------ 469 (501)
.+.+..+ .+.-+||+||++.. .....+...+... ...+..+|+||+...
T Consensus 85 ------------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 85 ------------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRA-RAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred ------------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHH-HHcCCeEEEECCCChhhhhhh
Confidence 1111111 12348999999852 2223444433321 234677999998532
Q ss_pred ---HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 ---VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+. ...++++++++.++-.+++.+++
T Consensus 144 ~~dL~SRl~-~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 144 LPDLRSRLA-QCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred hHHHHHHHh-cCceEEecCCCHHHHHHHHHHHH
Confidence 222222 35689999999999999999865
No 45
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=6.5e-07 Score=96.66 Aligned_cols=167 Identities=15% Similarity=0.204 Sum_probs=98.4
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.+++|.+..+..|.+++..+ .-.+.+.++|+.|+||||+|+.+++........... .+........+.
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---------pCg~C~sC~~i~ 83 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---------PCGVCSSCVEIA 83 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---------CCCCchHHHHHh
Confidence 3578999999999999998643 223556899999999999999998843211111100 000001111111
Q ss_pred HHhcc---CCCC-CCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799 401 RQLTQ---DEVD-EESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY 469 (501)
Q Consensus 401 ~~l~~---~~~~-~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~ 469 (501)
..... .... .....+. +.+.+... ..+++-++|||+++. ...++.|+..+-. ....+++|++|.+ ..
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE--PP~~vrFILaTTe~~k 161 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE--PPEHVKFLLATTDPQK 161 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--cCCCeEEEEECCCchh
Confidence 10000 0000 0011222 22222111 134567999999986 5677888888887 5666777666554 44
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+.-..+++.+|+.++..+++.+.+
T Consensus 162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 162 LPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred chHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 443333345789999999999998887754
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=98.55 E-value=7e-07 Score=88.34 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=92.7
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.++.+..|..++..+ +.+.+.++|++|+|||++|..+++.. ....|...+. .++.+..... +.++++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~-eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVL-ELNASDDRGI-DVVRNKI 85 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCcccee-eecccccccH-HHHHHHH
Confidence 3477999999999998887543 33557899999999999999988832 1122221111 0222222111 1222222
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcCCC
Q 010799 401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFSPS 477 (501)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~~~ 477 (501)
..+..... ....++.-+++||+++. ....+.|...+.. .+..+++|+++.. ..+...+.+.
T Consensus 86 ~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~--~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 86 KMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI--YSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc--ccCCceEEEEeCCccccchhHHHh
Confidence 21111100 00013466899999987 3445666666655 4556777776643 2222222224
Q ss_pred CcceeCCCCChHHHHHHHHHhh
Q 010799 478 IFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 478 ~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+++++++.++..+.+.+.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHH
Confidence 4689999999999988887654
No 47
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.3e-06 Score=90.63 Aligned_cols=170 Identities=19% Similarity=0.160 Sum_probs=100.2
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc-ceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC-RAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~-~~w~~v~~~~~~~~~~~~~~i 399 (501)
...+++|.+..+..|...+..+ .-.+.+.++|++|+||||+|+.+++.......... ..+ ..| .....+..+
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~--~~C----~~C~~C~~i 91 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI--KTC----EQCTNCISF 91 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc--CCC----CCChHHHHH
Confidence 4577999999999998877543 33468899999999999999999874322111100 000 000 000111111
Q ss_pred HHHhccCC----CCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCCh
Q 010799 400 LRQLTQDE----VDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREA 468 (501)
Q Consensus 400 ~~~l~~~~----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~ 468 (501)
........ .......+++...+... ..+++-++|+|+++. ...++.|+..+.. ..+.+.+|+ ||+..
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe--pp~~~vfI~aTte~~ 169 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE--PPPHIIFIFATTEVQ 169 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh--cCCCEEEEEEeCChH
Confidence 11000000 00011222222222211 234567899999986 4567888888887 566666655 55555
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+.+....+++.+++.++..+.+.+.+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence 6655554455689999999999999888765
No 48
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=7.4e-07 Score=93.19 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=99.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.+.++||.+...+.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+....... -.... ...+.....+..
T Consensus 14 tFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~------~~PCG~C~sC~~ 86 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT------AQPCGQCRACTE 86 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC------CCCCcccHHHHH
Confidence 4578999999999999999643 33467799999999999999998874321100 00000 001111111111
Q ss_pred HHHH-----hccCCCCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-
Q 010799 399 ILRQ-----LTQDEVDEESSLDDLESEFTGIL----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR- 466 (501)
Q Consensus 399 i~~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR- 466 (501)
|... +..... .....+++.+.+.... .++.-++|||+++. ...++.|+..+.. ...++.+|++|.
T Consensus 87 I~aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE--PP~~v~FILaTte 163 (700)
T PRK12323 87 IDAGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--PPEHVKFILATTD 163 (700)
T ss_pred HHcCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc--CCCCceEEEEeCC
Confidence 1110 000000 1122333333333221 34566999999986 4667888888877 556666555554
Q ss_pred ChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 467 EAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+...+.+.-..+.+..++.++..+.+.+.+
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 445544444345689999999999888877543
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.2e-06 Score=91.88 Aligned_cols=167 Identities=14% Similarity=0.198 Sum_probs=98.7
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+...+.|.+++..+ .-.+.+.++|+.|+||||+|+.+++...... + +. ...+.....+..+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~--~~-~~pCg~C~sC~~I~ 82 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCET------G--VT-STPCEVCATCKAVN 82 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------C--CC-CCCCccCHHHHHHh
Confidence 4578999999999999999643 2346889999999999999999887321111 1 10 00111111111111
Q ss_pred HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799 401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y 469 (501)
Q Consensus 401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~ 469 (501)
..-..+ ........+++...+.+. ..++.-++|||+++. ....+.|+..+.. ...++++|++|.+. .
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE--PP~~v~FILaTtd~~k 160 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE--PPEHVKFLFATTDPQK 160 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--CCCCcEEEEEECChHh
Confidence 100000 000011222222222211 124566899999986 3567788888777 56677788777653 2
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+.+.+
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 322222255799999999999988887644
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7.2e-07 Score=90.84 Aligned_cols=167 Identities=12% Similarity=0.113 Sum_probs=96.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.......... ..+....+ ...+.
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~-----~pCg~C~s----C~~i~ 85 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN-----EPCNECTS----CLEIT 85 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc-----cccCCCcH----HHHHH
Confidence 35789999999999999886432 2356899999999999999999883211110000 00111111 11111
Q ss_pred HHhccCC----CCCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799 401 RQLTQDE----VDEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY 469 (501)
Q Consensus 401 ~~l~~~~----~~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~ 469 (501)
....... .......++ +.+.+... ..++.-++|||+++. ...++.|+..+.. .......|++| ....
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE--Pp~~viFILaTte~~k 163 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE--PPAHIVFILATTEFHK 163 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc--CCCceEEEeecCChhh
Confidence 1111000 000111222 22222211 134566999999986 4668888888876 44555555444 4444
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+.-..|.+.+++.++..+.+.+.+
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 544444345679999999998888777653
No 51
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.51 E-value=1.9e-06 Score=85.37 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=91.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe--CCCCChHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV--SQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~--~~~~~~~~~~~~i 399 (501)
..+++|+++.++.+..++..+ ..+.+.++|++|+|||++|+.+++ ..........+ +.+ +..... ....+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~~~~--i~~~~~~~~~~-~~~~~~ 88 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALAR--ELYGEDWRENF--LELNASDERGI-DVIRNK 88 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHcCCccccce--EEeccccccch-HHHHHH
Confidence 467999999999999998543 334579999999999999999987 33221111122 222 221111 111111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCC
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSP 476 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~ 476 (501)
+..+....+ .....+-++++|+++.. .....|...+.. ....+.+|+++... .+.....+
T Consensus 89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~--~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM--YSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc--CCCCCeEEEEeCCccccchhHHH
Confidence 111111000 00123568999999863 345567776666 45567777776432 22222212
Q ss_pred CCcceeCCCCChHHHHHHHHHhh
Q 010799 477 SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 477 ~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+++++++.++....+.+.+
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHH
Confidence 44578999999999988887654
No 52
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.49 E-value=1.5e-07 Score=92.66 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCC--CHHHHHHHHHHHhcCCCCcC--c
Q 010799 144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEEL--ERRELVTDILKQVGGSKVEK--Q 219 (501)
Q Consensus 144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~--~~~~l~~~i~~~~~~~~~~~--~ 219 (501)
+++++|..-. .=.-..|+|.+|+||||||+.|||+.... +|++++||++++.+ +..++++.|.-.+-....+. .
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4555555322 22456899999999999999999876655 99999999999998 77888888763221111111 1
Q ss_pred ch------HHHHHHHH-ccCCeEEEEEecCCC
Q 010799 220 LD------PQKKLRKL-FTENRYLVVIINART 244 (501)
Q Consensus 220 ~~------~~~~l~~~-l~~kr~LlVlDdv~~ 244 (501)
.+ ..+..... -.+++.+|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 11111111 368999999999854
No 53
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.7e-06 Score=90.37 Aligned_cols=166 Identities=11% Similarity=0.149 Sum_probs=95.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+..+..|...+..+ .-.+.+.++|+.|+||||+|+.+++............+ .....+..+.
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC---------g~C~sC~~i~ 83 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC---------NKCENCVAIN 83 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC---------cccHHHHHHh
Confidence 3577999999999999988543 33456889999999999999998873211111000000 0000000000
Q ss_pred HH-------hccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799 401 RQ-------LTQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY 469 (501)
Q Consensus 401 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~ 469 (501)
.. +............++.+.+... ..+++-++|+|+++. ...++.|+..+.. ....+.+|++|.+ ..
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe--pp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE--PPEYVKFILATTDYHK 161 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc--CCCCceEEEEECChhh
Confidence 00 0000000001112222222221 234567999999985 4567888888888 5566766655543 33
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+.+...++++.+++.++..+.+.+.
T Consensus 162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~i 190 (546)
T PRK14957 162 IPVTILSRCIQLHLKHISQADIKDQLKII 190 (546)
T ss_pred hhhhHHHheeeEEeCCCCHHHHHHHHHHH
Confidence 44333335679999999999988777764
No 54
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.49 E-value=2.5e-06 Score=82.46 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=107.9
Q ss_pred cceeecchhHHHHHHHhhcCCCCc-eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~-~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
+.|.+|+.++..|..++.+.+... ..+.|+|-+|+|||.+.+.++++. .. ..+| +++...++...++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw--~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVW--LNCVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---ccee--eehHHhccHHHHHHHHHH
Confidence 568899999999999997665544 456999999999999999999843 22 3489 999999999999999999
Q ss_pred Hhc-cCCCCC---C--CCHHHHHHHHHHhc--C--CceEEEEEcCCCChhhHHH--------HHHhcCCCCCCCCCEEEE
Q 010799 402 QLT-QDEVDE---E--SSLDDLESEFTGIL--Y--EKRYLVVLDDVHSPGAWYD--------LKRIFSPQASPIGSRVIL 463 (501)
Q Consensus 402 ~l~-~~~~~~---~--~~~~~~~~~l~~~l--~--~~r~LlVlDnv~~~~~~~~--------l~~~l~~~~~~~~~~iIi 463 (501)
+.. .+.+.. . .+.......+.++- . ++.++|||||++...+.+. +...++. ...+|+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~-----~~i~ii 153 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE-----PTIVII 153 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC-----CceEEE
Confidence 996 332221 1 12223334444422 2 3479999999987544332 2222222 233444
Q ss_pred EeCC---hHHHhhcCC-CCcceeCCCCChHHHHHHHHH
Q 010799 464 ITRE---AYVARSFSP-SIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 464 TtR~---~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
++-. ......++. ...++..+..+.+|..++|.+
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 4332 222222232 456788899999999988764
No 55
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.48 E-value=5.6e-06 Score=87.36 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=71.9
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC--
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE-- 407 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~-- 407 (501)
.-+..|.+.|..+=..-.++.|.|.+|+|||+++..++. .....-..++| ++... +...+.... ..++.+.
T Consensus 257 tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~--~~~~~g~~~~y--is~e~--~~~~i~~~~-~~~g~~~~~ 329 (509)
T PRK09302 257 SGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAE--AACRRGERCLL--FAFEE--SRAQLIRNA-RSWGIDLEK 329 (509)
T ss_pred CCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEE--EEecC--CHHHHHHHH-HHcCCChHH
Confidence 445566666644434557999999999999999999887 33233345666 66543 333433332 2332210
Q ss_pred ------------CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh------hh----HHHHHHhcCCCCCCCCCEEEEE
Q 010799 408 ------------VDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP------GA----WYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 408 ------------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~------~~----~~~l~~~l~~~~~~~~~~iIiT 464 (501)
.....+.++....+.+.+.. +.-++|+|.+... .. +..+...+. ..|..+|+|
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k----~~~~t~l~t 405 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLK----SEEITGLFT 405 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHH----hCCCeEEEE
Confidence 00122345666666666644 4458999997541 11 122333333 357788888
Q ss_pred eCC
Q 010799 465 TRE 467 (501)
Q Consensus 465 tR~ 467 (501)
.-.
T Consensus 406 ~~~ 408 (509)
T PRK09302 406 NLT 408 (509)
T ss_pred ecc
Confidence 653
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.4e-06 Score=84.31 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=98.1
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc----cccCCccceeEEEEeC-CCCChHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY----TKKNFPCRAWANVYVS-QDFDMRSVF 396 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~----~~~~f~~~~w~~v~~~-~~~~~~~~~ 396 (501)
..+++|.+...+.|...+..+ .-++...++|+.|+|||++|..++...- ...|.+...| .... ....... .
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~--~~~~~~~i~v~~-i 78 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF--KPINKKSIGVDD-I 78 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe--ccccCCCCCHHH-H
Confidence 356899999999999988543 3446889999999999999999887321 1223333333 2111 1111111 2
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS 473 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~ 473 (501)
+++...+.... ..+++-++|+|+++. ...++.|+..+.. .+.++.+|++|.+.. +...
T Consensus 79 r~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 79 RNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE--PPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence 22222221110 123455777777654 5678899999999 788899888887653 3233
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHh
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.+...++.+.+++.++..+.+.+.
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHH
Confidence 3335679999999999998877654
No 57
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=2.8e-06 Score=85.74 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=95.5
Q ss_pred ccceeecchhHHHHHHHhhcCCC--------CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSD--------KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR 393 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~--------~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~ 393 (501)
.++++|.+..++.|.+.+..+.. -++.+.++|++|+|||++|+.++........- + - .+...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~--~----~Cg~C 73 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E--P----GCGEC 73 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C--C----CCCCC
Confidence 46789999999999999965431 34678999999999999999987632111100 0 0 00000
Q ss_pred HHHHHHHHHhccC-----CCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEE
Q 010799 394 SVFADILRQLTQD-----EVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRV 461 (501)
Q Consensus 394 ~~~~~i~~~l~~~-----~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~i 461 (501)
.....+...-.++ ........+++. .+.+.+ .+++-++|+|+++. ....+.|+..+.. ...++.+
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe--p~~~~~f 150 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE--PPPRTVW 150 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc--CCCCCeE
Confidence 0111111000000 000011222222 222222 23455888899986 4455778887777 5667766
Q ss_pred EEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 462 ILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 462 IiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|++|.+. .+...+.+.-..+.+++++.++..+.+.+.
T Consensus 151 IL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 151 LLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred EEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 6666653 444444445579999999999999888643
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=4.7e-07 Score=77.08 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=76.7
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccc---cccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc--CcchHHHHHHHH
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVK---EYFQCRAWVPVPEELERRELVTDILKQVGGSKVE--KQLDPQKKLRKL 229 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~l~~~ 229 (501)
+-+.+.|+|.+|+|||++++.+.+...-. ..-...+|+..+...+...+.+.|+++++..... +..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999998642110 0023446999988889999999999999977655 344556777777
Q ss_pred ccCCe-EEEEEecCCC---hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 230 FTENR-YLVVIINART---PDIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 230 l~~kr-~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
++..+ .+||||++.. ...++.|..... ..+.+||++-+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 5999999854 344566655443 556777776654
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.6e-06 Score=79.04 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=81.7
Q ss_pred ccceeecchhHHHHHHHhh---cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTL---NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~---~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.++|||.+..+..+.-++. ..++....+.+|||+|+||||||.-+++ .....|. + ++...-..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~--~sg~~i~k------- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---I--TSGPAIEK------- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---E--EECCC--S-------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---e--ccchhhhh-------
Confidence 4779999999998876653 2345567899999999999999999999 5555542 2 33221111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC------CCC-----------CC
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA------SPI-----------GS 459 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~------~~~-----------~~ 459 (501)
..++...+.+. +++.+|++|++.. ..+.+.|++...+.. .++ -+
T Consensus 89 ---------------~~dl~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ---------------AGDLAAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---------------HHHHHHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11222222221 2345888899986 455566666544310 111 12
Q ss_pred EEEEEeCChHHHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAYVARSFSP-SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
-|=-|||...+...+.. .+.+.+++..+.+|-.++..+.+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 24457887766655542 23355899999999998887654
No 60
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.46 E-value=3.9e-06 Score=89.00 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=106.2
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC-CCChHHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ-DFDMRSVFADILR 401 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~-~~~~~~~~~~i~~ 401 (501)
.+.|-|..-++.|.. ..+.|.+.|..|+|-|||||+.+++. . ...-..+.| +++.+ +.++...+..++.
T Consensus 19 ~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~W--lslde~dndp~rF~~yLi~ 88 (894)
T COG2909 19 DNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAW--LSLDESDNDPARFLSYLIA 88 (894)
T ss_pred ccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeE--eecCCccCCHHHHHHHHHH
Confidence 345666666655543 34679999999999999999999865 2 233456899 98854 4567788888888
Q ss_pred HhccCCCC------------CCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEE
Q 010799 402 QLTQDEVD------------EESSLDDLESEFTGILYE--KRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 402 ~l~~~~~~------------~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
.+....+. +..+...+++.+..-+.+ .++.+||||..- ..--..+...+.. .+++..+|+|
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~--~P~~l~lvv~ 166 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH--APENLTLVVT 166 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh--CCCCeEEEEE
Confidence 87754332 223445556666655543 589999999864 2222223233334 5569999999
Q ss_pred eCChHHHhhcCC--CCcceeCC----CCChHHHHHHHHHhh
Q 010799 465 TREAYVARSFSP--SIFLHQLR----PLNEEESGKLFQRRL 499 (501)
Q Consensus 465 tR~~~~~~~~~~--~~~~~~l~----~L~~~ea~~Lf~~~~ 499 (501)
||+..-...-.. ....++++ .|+.+|+.++|..+.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 998742221111 22334443 388899999988764
No 61
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.5e-06 Score=87.92 Aligned_cols=167 Identities=15% Similarity=0.126 Sum_probs=97.7
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.++||.+...+.|.+.+..+ .-++.+.++|+.|+||||+|+.+++.......... .++.....+..+.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~pCg~C~~C~~i~ 80 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DPCGTCHNCISIK 80 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CCccccHHHHHHh
Confidence 4578999999999998888543 23458999999999999999998763211110000 0001111111111
Q ss_pred HHhccCC---C-CCCCCHHHHHHHHHH---h-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-ChH
Q 010799 401 RQLTQDE---V-DEESSLDDLESEFTG---I-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR-EAY 469 (501)
Q Consensus 401 ~~l~~~~---~-~~~~~~~~~~~~l~~---~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~ 469 (501)
.....+- + ....+.+++...+.. . ..++.-++|+|+++. ...++.|+..+.. ..+.+.+|++|. ...
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe--Pp~~v~fIlatte~~K 158 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE--PAPHVKFILATTEVKK 158 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC--CCCCeEEEEEeCChHH
Confidence 1100000 0 001122222211111 1 124566899999976 4557888888888 666777666554 445
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+.+.+
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 555544466789999999999888877654
No 62
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.45 E-value=3.4e-06 Score=81.44 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCc-chHHHHHHHH----
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQ-LDPQKKLRKL---- 229 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~l~~~---- 229 (501)
+..++.|+|.+|+|||||++.+++..... .+ ..+|+. ....+..+++..++..++.+..... ......+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35678999999999999999999754322 11 223433 3346788999999999876543221 1222333322
Q ss_pred -ccCCeEEEEEecCCCh--hHHHHHhh
Q 010799 230 -FTENRYLVVIINARTP--DIWDILKY 253 (501)
Q Consensus 230 -l~~kr~LlVlDdv~~~--~~~~~l~~ 253 (501)
..+++++||+||++.. ..++.+..
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 3678899999999873 34565543
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=98.44 E-value=1.9e-06 Score=90.17 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=91.8
Q ss_pred ccceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
..+++|.++.++.|..++..- +...+.+.|+|++|+|||++|..++++ .. |.. +- ++++...+ .+.+..+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ie--lnasd~r~-~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IE--LNASDQRT-ADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EE--Eccccccc-HHHHHHH
Confidence 467999999999999998532 222678999999999999999999983 32 221 11 34333222 2223333
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHh
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREA-YVAR 472 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~ 472 (501)
+........ ....++-+||||+++.. ..+..+...+.. .+..+|+|+.+. ....
T Consensus 85 i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 85 AGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK----AKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc----CCCCEEEeccCccccch
Confidence 322221111 11135679999999873 235666665554 234455555432 1211
Q ss_pred -hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 -SFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+.+....+.+++++.++....+.+.+
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHH
Confidence 222245689999999999888877654
No 64
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.1e-06 Score=87.44 Aligned_cols=173 Identities=12% Similarity=0.128 Sum_probs=99.0
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE-eCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY-VSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~-~~~~~~~~~~~~~i 399 (501)
...+++|.+...+.|..++.++ .-++.+.++|++|+||||+|+.+++.......+...-| .. ...++........+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~--~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADY--LQEVTEPCGECESCRDF 90 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccc--cccCCCCCCCCHHHHHH
Confidence 3577999999999999988543 23356889999999999999998874322111111111 00 01111111222222
Q ss_pred HHHhccCC---CC-CCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799 400 LRQLTQDE---VD-EESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE 467 (501)
Q Consensus 400 ~~~l~~~~---~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~ 467 (501)
...-.... .. .....+++.+ +.+.+ .+.+-++|+|+++. ...++.++..+.. ..+.+.+|++| +.
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--p~~~t~~Il~t~~~ 167 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--PPPHAIFIFATTEL 167 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc--CCCCeEEEEEeCCh
Confidence 21111100 00 1112333333 22323 24566889999986 3467888888887 56677766655 43
Q ss_pred hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...+.+...++++.+++.++..+.+.+.+
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 44443333245689999999999888777643
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.41 E-value=2.7e-06 Score=80.23 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=81.5
Q ss_pred ccee-ecch-hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 323 TAVV-SMEN-DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 323 ~~fv-GR~~-~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
++|+ |-.. .+..+.++... ...+.+.|+|++|+|||+|+..+++ .....-..+.+ +++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y--~~~~~~~~--------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGY--VPLDKRAW--------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EEHHHHhh---------
Confidence 4565 5222 33334444322 2346899999999999999999888 44333333445 55422100
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHH-HHHHhcCCCCCCCCCEEEEEeCCh--------
Q 010799 401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWY-DLKRIFSPQASPIGSRVILITREA-------- 468 (501)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~-~l~~~l~~~~~~~~~~iIiTtR~~-------- 468 (501)
...+..+.+.+ --+|+|||++.. ..|+ .+...+.......+.++|+||+..
T Consensus 87 ------------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 87 ------------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred ------------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 01111222211 137899999762 2332 233333221012234799998754
Q ss_pred -HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 -YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 -~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+. .+.+++++++++++-.+++.+++
T Consensus 150 ~~L~SRl~-~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 150 PDLASRLD-WGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHHHHh-CCceeeecCCCHHHHHHHHHHHH
Confidence 2333333 66899999999999999988754
No 66
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.6e-06 Score=89.15 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=98.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC--ccceeEEEEeCCCCChHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF--PCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f--~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.++++||-+..+..|.+++..+ .-.+.+.++|+.|+||||+|+.+++........ .+... ..+.....+..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~------~pCg~C~~C~~ 86 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA------TPCGVCQACRD 86 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC------CCCCccHHHHH
Confidence 4578999999999999988643 334678999999999999999987632111100 11000 11111122222
Q ss_pred HHHHhccCC----CCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-
Q 010799 399 ILRQLTQDE----VDEESSLDDLESEFTGIL----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE- 467 (501)
Q Consensus 399 i~~~l~~~~----~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~- 467 (501)
+...-..+. .......+++.+.+.... .++.-++|||+++. ...++.|+..+.. ....+.+|++|.+
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE--PP~~~~fIL~Ttd~ 164 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE--PPEYLKFVLATTDP 164 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc--CCCCeEEEEEECCc
Confidence 211000000 001122333332222211 13445889999986 4567888888877 5566666666543
Q ss_pred hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...+.+....+++.+++.++..+.+.+.+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 34433333356799999999999888887654
No 67
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.39 E-value=3.2e-06 Score=83.66 Aligned_cols=147 Identities=11% Similarity=0.158 Sum_probs=88.1
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|.+...+.+..++.. +.-+..+.++|++|+|||++|..+++ .....| .. +++.. .. .+...+.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~--~~~~~~---~~--i~~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 20 IDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCN--EVGAEV---LF--VNGSD-CR-IDFVRNRLT 89 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHH--HhCccc---eE--eccCc-cc-HHHHHHHHH
Confidence 47799999999999999864 33446777899999999999999988 332222 23 44433 11 111111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS 477 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~ 477 (501)
.+.... . +...+-++|||+++.. .....+...+.. ...++++|+||.... +...+.+.
T Consensus 90 ~~~~~~---------------~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~--~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 90 RFASTV---------------S-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEA--YSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHhh---------------c-ccCCCeEEEEECcccccCHHHHHHHHHHHHh--cCCCceEEEEcCChhhchHHHHhh
Confidence 111000 0 1134568889999754 233445555555 456788888886532 22222224
Q ss_pred CcceeCCCCChHHHHHHHH
Q 010799 478 IFLHQLRPLNEEESGKLFQ 496 (501)
Q Consensus 478 ~~~~~l~~L~~~ea~~Lf~ 496 (501)
...+.++.++.++..+++.
T Consensus 152 ~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred ceEEEeCCCCHHHHHHHHH
Confidence 4577888888888776654
No 68
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.39 E-value=1.5e-06 Score=87.87 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=77.7
Q ss_pred ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccc-ccc---ceeEEEEcCCCCCHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVK-EYF---QCRAWVPVPEELERRELVT 205 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F---~~~~wv~vs~~~~~~~l~~ 205 (501)
+..++||+++.++|...|... +.....+.|+|++|+|||++++.+++.-.-. ... -..+|+......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 457999999999999998742 2344568999999999999999999642110 111 1335666666667788999
Q ss_pred HHHHHhc---CCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCCh
Q 010799 206 DILKQVG---GSKVE---KQLDPQKKLRKLFT--ENRYLVVIINARTP 245 (501)
Q Consensus 206 ~i~~~~~---~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~~ 245 (501)
.|++++. ..... +..+....+.+.+. ++.++||||++..-
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 9999984 21111 11233455555553 56789999998654
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=9.3e-06 Score=73.88 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 427 EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 427 ~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.+-++|+||++. ...++.|+..+.. .+..+.+|++|++. .+...+.+...++.+.+++.++..+.+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 4567899999986 3457788888877 56677777777653 333333335679999999999998887653
No 70
>PTZ00202 tuzin; Provisional
Probab=98.38 E-value=1.9e-05 Score=78.57 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=73.5
Q ss_pred ccccccccccchhhHHHHHHHHhcCC-CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH
Q 010799 128 DSAKKTGILDLNKEVNKLADFLIRSH-SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD 206 (501)
Q Consensus 128 ~~~~~~~~vg~~~~~~~l~~~L~~~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 206 (501)
.+....+|+||+.+..+|...|...+ ...+++.|.|++|+|||||++.+..... ..+++.-+. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHH
Confidence 34456799999999999999997533 2346889999999999999999884322 123333333 77999999
Q ss_pred HHHHhcCCCCcCcchHHHHHHHHc-----c-CCeEEEEEe
Q 010799 207 ILKQVGGSKVEKQLDPQKKLRKLF-----T-ENRYLVVII 240 (501)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlD 240 (501)
++.+|+.+......++...|.+.| . +++.+||+-
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999754433334444444333 3 677777763
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=3.6e-06 Score=72.53 Aligned_cols=123 Identities=9% Similarity=-0.105 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCC
Q 010799 136 LDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSK 215 (501)
Q Consensus 136 vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~ 215 (501)
.|++.....+...+... ..+.+.|+|.+|+|||||++.+++.-. ..-...+++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 36777888888887653 345788999999999999999996432 111234455444433222211111000
Q ss_pred CcCcchHHHHHHHHccCCeEEEEEecCCCh-----hHHHHHhhcCCCC---CCCcEEEEEecccc
Q 010799 216 VEKQLDPQKKLRKLFTENRYLVVIINARTP-----DIWDILKYLFPNS---SNGSRVILSFQEAD 272 (501)
Q Consensus 216 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTtr~~~ 272 (501)
............+..+|++||++.. ..+..+...+... ..+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011122233456789999999853 2222222222221 35788888887655
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=8.8e-06 Score=80.98 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=102.2
Q ss_pred cccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHH
Q 010799 319 SEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 319 ~~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.+..+++|.++....|...+..+ .-+..+.|+|+.|+||||+|..+++..-.... +..... ...+.-...+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-----~~~~~~c~~c 92 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-----ADPDPASPVW 92 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-----CCCCCCCHHH
Confidence 456788999999999999998543 34467999999999999999998874211110 111000 1111111222
Q ss_pred HHHHHH-------hccCCCC------CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCC
Q 010799 397 ADILRQ-------LTQDEVD------EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASP 456 (501)
Q Consensus 397 ~~i~~~-------l~~~~~~------~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~ 456 (501)
..+... +..+... .....+++ ..+.+++. +++-++|+|+++. ....+.|+..+.. ..
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE--pp 169 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE--PP 169 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc--CC
Confidence 333222 1111000 11223333 34455543 3456899999986 4556778888777 45
Q ss_pred CCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799 457 IGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 457 ~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
.++.+|++|... .+...+.+.-..+++.+++.++..+++.+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 556655555443 33333443456999999999999998876
No 73
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=7.7e-07 Score=75.54 Aligned_cols=102 Identities=13% Similarity=0.045 Sum_probs=68.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
.+++.|.|+.|+|||||+++++.+.. .....+++...+......... +..+.+.+...++..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP---------------DLLEYFLELIKPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh---------------hhHHHHHHhhccCCc
Confidence 46899999999999999999985332 224445554443322110000 022333344444778
Q ss_pred EEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 236 LVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 236 LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
+|+||++.....|......+-+..+..+|++|+.+.....
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 8999999988889877777776666789999998877764
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=3.7e-06 Score=89.24 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=99.4
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.++||.+..+..|...+..+ .-.+.+.++|+.|+||||+|+.+++.......+. ...+.....+..+.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHHH
Confidence 4578999999999999988643 2335678999999999999999987432111110 00111112222222
Q ss_pred HHhccCC---C-CCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799 401 RQLTQDE---V-DEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY 469 (501)
Q Consensus 401 ~~l~~~~---~-~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~ 469 (501)
..-..+. . ......+++...+.+. ..++.-++|||+++. ...++.|+..+-. ....+++|++|.+ ..
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE--Pp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQK 161 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc--CCCCeEEEEecCCccc
Confidence 1000000 0 0011223332222221 134566999999986 4567888888888 5666666665554 44
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+.-..+.+.+|+.++..+.+.+.+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 443433355799999999999998887643
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.37 E-value=5.8e-06 Score=83.88 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=89.5
Q ss_pred ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
.+++.|+++.++++.+.+.. +-..++.+.++|++|+|||++|+.+++ ..... | +.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~--i~v~~-- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----F--IRVVG-- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----E--EEeeh--
Confidence 35799999999999887632 113456799999999999999999988 43332 3 33321
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hh-HHHHHHhc---CCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GA-WYDLKRIF---SPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~-~~~l~~~l---~~~~ 454 (501)
.. +.....+. ....+...+...-...+.+|+||+++.. .. ...+...+ ....
T Consensus 199 --~~----l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SE----LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HH----HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 11 11111110 1111222222222345789999999863 11 11222222 2210
Q ss_pred CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhhc
Q 010799 455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
...+..||.||.... +...+- .....+.+++++.++..++|..++.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 123556777776533 222211 1346799999999999999987653
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=2.8e-06 Score=89.98 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=94.4
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.+++|.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++......... + ..|.. ...+..+.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~--~pCg~----C~sCr~i~ 83 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G--EPCGV----CQSCTQID 83 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C--CCCcc----cHHHHHHh
Confidence 4578999999999999998643 2346789999999999999999887321111110 0 00000 00001110
Q ss_pred HH-----hccCCCCCCCCHHHHHHHHHH---h-cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799 401 RQ-----LTQDEVDEESSLDDLESEFTG---I-LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA- 468 (501)
Q Consensus 401 ~~-----l~~~~~~~~~~~~~~~~~l~~---~-l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~- 468 (501)
.. +..... .....+.+...+.. . ..+++-++|||+++.. ...+.|+..+.. ....+++|++|.+.
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE--Pp~~v~fILaTtd~~ 160 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE--PPEHVKFILATTDPH 160 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh--CCCCcEEEEEeCCcc
Confidence 00 000000 11122222222221 1 1245668999999863 346677887766 45567777776543
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+.+....+.+.+++.++..+.+.+.+
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il 191 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVL 191 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHH
Confidence 2222222234578888999999888877554
No 77
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.37 E-value=3.8e-06 Score=92.27 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=88.1
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CC-ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NF-PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f-~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||++++.++...|... ...-+.++|++|+|||++|..+++ +... .+ ...+| .+ ++..+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~---~~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIY---SL----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEE---Ee----cHHHHh
Confidence 56999999999999988553 234678999999999999999988 3322 12 23344 11 111111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
. .... ....++.++.+.+.+ ...+.+|++|+++.. +..+.|.+.+.. ...++|-+
T Consensus 251 a-------~~~~--~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~----g~i~~Iga 317 (731)
T TIGR02639 251 A-------GTKY--RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS----GKLRCIGS 317 (731)
T ss_pred h-------hccc--cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC----CCeEEEEe
Confidence 0 0000 012222333333332 345789999998742 123344444433 12445555
Q ss_pred eCChHH------HhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYV------ARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|....+ ...+.+....+++++++.++..+++.+.
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 554322 1122224568999999999999999854
No 78
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.36 E-value=1.8e-05 Score=82.79 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC-
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV- 408 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~- 408 (501)
.-+..|.+.|..+=..-.++.|.|++|+|||+|+.+++. ....+-..+++ ++. ..+...+.... ..++.+..
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y--~s~--eEs~~~i~~~~-~~lg~~~~~ 319 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAIL--FAY--EESRAQLLRNA-YSWGIDFEE 319 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEe--eCCHHHHHHHH-HHcCCChHH
Confidence 445666777755545668999999999999999999887 33222233444 443 34444444443 23322110
Q ss_pred -------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh------hhHH----HHHHhcCCCCCCCCCEEEEE
Q 010799 409 -------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP------GAWY----DLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 409 -------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~------~~~~----~l~~~l~~~~~~~~~~iIiT 464 (501)
......++....+.+.+.+ +.-++|+|.+... .+.. .|...+. ..+..+++|
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk----~~~it~~~t 395 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK----QEEITGFFT 395 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHh----hCCCeEEEe
Confidence 0123446677777777754 4568999998742 1111 1222222 457778888
Q ss_pred eCCh
Q 010799 465 TREA 468 (501)
Q Consensus 465 tR~~ 468 (501)
.-..
T Consensus 396 ~~~~ 399 (484)
T TIGR02655 396 NTSD 399 (484)
T ss_pred eccc
Confidence 5443
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=2.1e-06 Score=89.89 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=96.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|++..++.|.+.+..+ .-++.+.++|+.|+|||++|+.+++... |..| ... ..+.-...+..+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~--~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNP--KDG-DCCNSCSVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCC--CCC-CCCcccHHHHHHH
Confidence 3577999999999999988543 3346789999999999999999987421 1112 110 1111112222221
Q ss_pred HHhccCC----CCCCCCHHHH---HHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-ChH
Q 010799 401 RQLTQDE----VDEESSLDDL---ESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR-EAY 469 (501)
Q Consensus 401 ~~l~~~~----~~~~~~~~~~---~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~ 469 (501)
....... .......+++ ...+... ...++-++|+|+++. ...++.|+..+.. .+..+.+|++|. ...
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE--PPKHVVFIFATTEFQK 161 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--CCCcEEEEEECCChHh
Confidence 1111000 0001122222 2222111 112344799999976 4567788888877 455666655553 334
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++....+.+.+
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 443333356689999999999888777643
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=1e-05 Score=81.46 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=93.6
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc--cCCc-cceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK--KNFP-CRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~--~~f~-~~~w~~v~~~~~~~~~~~~~~ 398 (501)
..+++|.+..++.|.+.+..+ .-.+.+.++|++|+|||++|+.+....... ..+. +-.+ .....
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c------------~~c~~ 79 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC------------ESCKE 79 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC------------HHHHH
Confidence 467899999999999988543 334678999999999999999887632111 1110 0000 00000
Q ss_pred HHHHhccC----CCCCCCCH---HHHHHHHHHh-cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 399 ILRQLTQD----EVDEESSL---DDLESEFTGI-LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 399 i~~~l~~~----~~~~~~~~---~~~~~~l~~~-l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
+....... ........ .++...+... ..+.+-++|+|+++.. ..++.++..+.. ....+.+|++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~--~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 80 INSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE--PPEHVVFILATTEP 157 (355)
T ss_pred HhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC--CccceeEEEEeCCH
Confidence 00000000 00000111 1122222111 1234568899998764 557788888866 55667777776554
Q ss_pred H-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 Y-VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
. +...+.+....+++++++.++..+.+...+
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence 3 333333345688999999999888887644
No 81
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.35 E-value=4.1e-05 Score=79.92 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=75.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E-----EEEeCCCC-----C------------hHHHHHHHHHHh
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A-----NVYVSQDF-----D------------MRSVFADILRQL 403 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~-----~v~~~~~~-----~------------~~~~~~~i~~~l 403 (501)
..|+|+|+.|+|||||.+.+.. .....-..+.| . |+...... + ...-.+..+..+
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g--~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhh--hcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 5899999999999999999855 22211111111 0 02211100 0 123334444444
Q ss_pred ccCCCC------CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 404 TQDEVD------EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 404 ~~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
...... ..+.-+...-.+...+-.++-+||||+--+ .+..+.|...|..+ .+.||+.|.++......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRV 502 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 443332 122334445555666667888999999765 34556666666663 45689999999888776
Q ss_pred CCCCcceeCC
Q 010799 475 SPSIFLHQLR 484 (501)
Q Consensus 475 ~~~~~~~~l~ 484 (501)
. ..++.+.
T Consensus 503 a--~~i~~~~ 510 (530)
T COG0488 503 A--TRIWLVE 510 (530)
T ss_pred c--ceEEEEc
Confidence 5 4444444
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9e-06 Score=82.22 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=91.2
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc---cCCccceeEEEEeCCCC-ChHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK---KNFPCRAWANVYVSQDF-DMRSVF 396 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~---~~f~~~~w~~v~~~~~~-~~~~~~ 396 (501)
...+++|.+...+.+.+.+..+ .-++.+.++|++|+|||++|..+.+..... .......++.+...... .-.+..
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3577999999999999999643 344689999999999999999987732110 01111111001111100 000111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeC-ChHHHhh
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITR-EAYVARS 473 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~~~~~ 473 (501)
.++...+... . ..+++-++++|+++.. ..++.+...+.. ....+.+|++|. ...+...
T Consensus 94 ~~l~~~~~~~----------------p-~~~~~kiviIDE~~~l~~~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 94 RNLIDQVRIP----------------P-QTGKYKIYIIDEVHMLSSAAFNAFLKTLEE--PPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHhhc----------------c-ccCCcEEEEEeChhhcCHHHHHHHHHHHhC--CCCceEEEEEeCCcccCCHH
Confidence 1222211110 0 1234558999999753 446777776665 444556665553 3333333
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...++++.+++.++....+.+.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHH
Confidence 22245688999999999888777643
No 83
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.9e-05 Score=76.00 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=99.0
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++-|-++++++|.+.+.-+ =+.++-|.+||+||+|||-||+++++ +....| +.+...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-------IrvvgS- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-------IRVVGS- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-------EEeccH-
Confidence 467889999999998876321 24567899999999999999999999 666666 444321
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
++....-+.+. .++..+.+.-+. .+++|++|.++.. ..+-+|+..+.-+
T Consensus 220 -------ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 -------ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred -------HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 33333333322 345555555554 4899999998761 1233455555553
Q ss_pred CCCCCCEEEEEeCChHHH-hh-cC--CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAYVA-RS-FS--PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~~~-~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
......+||..|-...+. .. +. .-...++++..+.+.-.+.|.-|.
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 334567888876544322 11 12 156789998777777777776554
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9.4e-06 Score=86.27 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=99.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE-eCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY-VSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~-~~~~~~~~~~~~~i 399 (501)
...+++|.+..+..|.+.+..+ .-.+.+.++|+.|+||||+|+.+++............| .. ....+.-...+..+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~--~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVY--LQEVTEPCGECESCRDF 90 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccc--ccccCCCCccCHHHHHH
Confidence 3578999999999999988542 33456889999999999999998874322111111112 10 00111111222222
Q ss_pred HHHhccCC---C-CCCCCHHHHHHHHHHh----cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEe-CCh
Q 010799 400 LRQLTQDE---V-DEESSLDDLESEFTGI----LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILIT-REA 468 (501)
Q Consensus 400 ~~~l~~~~---~-~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTt-R~~ 468 (501)
...-.... . ......+++...+... ..+.+-++|+|+++.. ...+.|+.++.. ....+.+|++| +..
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe--Pp~~tv~IL~t~~~~ 168 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE--PPPHAIFIFATTELH 168 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC--CCCCeEEEEEeCChh
Confidence 11110000 0 0111233443332222 2244567899998863 457788888888 55566655554 444
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.+...+.+...++++.+++.++....+.+.
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 554444436679999999999988777654
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6e-06 Score=86.26 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=95.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.++||-+..++.|.+++..+ .-.+...++|+.|+||||+|+.+++.......+.. .++.....+..+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---------~pCg~C~~C~~i~ 83 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---------NPCNDCENCREID 83 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---------ccCCCCHHHHHHh
Confidence 3578999999999999999543 23456799999999999999998874321111110 0011111111111
Q ss_pred HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799 401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y 469 (501)
Q Consensus 401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~ 469 (501)
..-..+ ........+++...+... ..++.-++|||+++. ....+.|+..+.. ....+++|++|.+. .
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe--pp~~~~fIlattd~~k 161 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE--PPSHVKFILATTDHHK 161 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc--cCCCeEEEEEECChHh
Confidence 100000 000011222222222111 124556899999986 4567888888887 56677777665443 3
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+.+....+++.+++.++..+.+.+.
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence 33333334567889999998877665543
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.1e-05 Score=84.72 Aligned_cols=167 Identities=15% Similarity=0.184 Sum_probs=94.2
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.+++|.+..++.|..++..+ .-.+.+.++|++|+||||+|+.+++......... . .++.....+..+.
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~------~pcg~C~~C~~i~ 83 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---A------TPCGVCSACLEID 83 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---C------CCCCCCHHHHHHh
Confidence 4577999999999999988643 2335678999999999999999887321111000 0 0011011111111
Q ss_pred HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799 401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-Y 469 (501)
Q Consensus 401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~ 469 (501)
..-..+ ........+++...+.+. ..+++-++|+|+++.. ...+.|+..+.. ....+.+|++|.+. .
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe--pp~~~~fIL~t~d~~k 161 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE--PPEHVKFILATTDPQK 161 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC--CCCCEEEEEEeCChhh
Confidence 000000 000011222222222111 1245679999999863 457788888887 55667666666443 2
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+.+.+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 222222234688999999998887776543
No 87
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=7.2e-06 Score=89.91 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=99.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.+.++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.......... ..+.....+..+.
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---------~pCg~C~sC~~~~ 82 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS---------TPCGECDSCVALA 82 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---------CCCcccHHHHHHH
Confidence 3577999999999999998643 23356889999999999999999874322111100 0011111111111
Q ss_pred HH-------hccCCCCCCCCHHHHHHHHHH----hcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 401 RQ-------LTQDEVDEESSLDDLESEFTG----ILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 401 ~~-------l~~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
.. +..... .....+++.+...+ -..++.-++|||+++. ...++.|+.++.. ....+.+|++|.+
T Consensus 83 ~g~~~~~dv~eidaa-s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--pP~~~~fIl~tt~ 159 (824)
T PRK07764 83 PGGPGSLDVTEIDAA-SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--PPEHLKFIFATTE 159 (824)
T ss_pred cCCCCCCcEEEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC--CCCCeEEEEEeCC
Confidence 11 000000 01123333221111 1234556889999986 4667788888888 5667766665543
Q ss_pred -hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 -AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...+.+...+|++.+++.++..+++.+.+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 44555555467799999999999888777643
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=4.2e-06 Score=77.92 Aligned_cols=156 Identities=21% Similarity=0.316 Sum_probs=86.4
Q ss_pred cccee-ecchh-HHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHH
Q 010799 322 VTAVV-SMEND-ILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 322 ~~~fv-GR~~~-~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~ 396 (501)
+++|| |-..+ .-.....+.. .......+.|+|+.|+|||.|...+++ ....... .+++ +++ .+..
T Consensus 7 Fdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y--~~~------~~f~ 76 (219)
T PF00308_consen 7 FDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVY--LSA------EEFI 76 (219)
T ss_dssp CCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEE--EEH------HHHH
T ss_pred cccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhcccccccee--ecH------HHHH
Confidence 34563 54333 2333333433 333345689999999999999999998 4443322 3444 432 3444
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hh-HHHHHHhcCCCCCCCCCEEEEEeCChH---
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GA-WYDLKRIFSPQASPIGSRVILITREAY--- 469 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~-~~~l~~~l~~~~~~~~~~iIiTtR~~~--- 469 (501)
..+...+.... ...+++.+.+ -=+|+|||++.. .. .+.+...+... ...|.++|+|+....
T Consensus 77 ~~~~~~~~~~~----------~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~-~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 77 REFADALRDGE----------IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRL-IESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HHHHHHHHTTS----------HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHH-HHTTSEEEEEESS-TTTT
T ss_pred HHHHHHHHccc----------chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHH-HhhCCeEEEEeCCCCccc
Confidence 44444444311 2334444442 247889999762 11 23333333321 234778999985431
Q ss_pred ------HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 470 ------VARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 470 ------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+...+. .+.++++++++.++..+++.+++.
T Consensus 145 ~~~~~~L~SRl~-~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 145 SGLLPDLRSRLS-WGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp TTS-HHHHHHHH-CSEEEEE----HHHHHHHHHHHHH
T ss_pred cccChhhhhhHh-hcchhhcCCCCHHHHHHHHHHHHH
Confidence 223333 678999999999999999998764
No 89
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=7.7e-06 Score=76.45 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=70.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
.+.+.|||++|+|||+|+..++. ... ..+ ++.. ....++. ..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~--~~~-----~~~--i~~~------~~~~~~~------------------~~~~--- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWRE--KSD-----ALL--IHPN------EIGSDAA------------------NAAA--- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--hcC-----CEE--ecHH------HcchHHH------------------Hhhh---
Confidence 46799999999999999998887 221 123 3321 0000111 1111
Q ss_pred CCceEEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCC---------hHHHhhcCCCCcceeCCCCChHHHHHHH
Q 010799 426 YEKRYLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITRE---------AYVARSFSPSIFLHQLRPLNEEESGKLF 495 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf 495 (501)
+ -+|++||++.. .+.+.+...+... ...|..+|+|++. +.+...+. ...++++++++.++-.+++
T Consensus 88 -~--~~l~iDDi~~~~~~~~~lf~l~n~~-~~~g~~ilits~~~p~~~~~~~~dL~SRl~-~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 88 -E--GPVLIEDIDAGGFDETGLFHLINSV-RQAGTSLLMTSRLWPSSWNVKLPDLKSRLK-AATVVEIGEPDDALLSQVI 162 (226)
T ss_pred -c--CeEEEECCCCCCCCHHHHHHHHHHH-HhCCCeEEEECCCChHHhccccccHHHHHh-CCceeecCCCCHHHHHHHH
Confidence 1 27888999752 2234444444331 2347789998873 23333443 6789999999999999999
Q ss_pred HHhhc
Q 010799 496 QRRLK 500 (501)
Q Consensus 496 ~~~~~ 500 (501)
++++.
T Consensus 163 ~~~~~ 167 (226)
T PRK09087 163 FKLFA 167 (226)
T ss_pred HHHHH
Confidence 98763
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=5.2e-06 Score=78.17 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=72.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
...+.|+|++|+|||.|+..+++ .....-..++| ++... +... .. .+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y--~~~~~------~~~~---------------~~----~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVY--LPLAE------LLDR---------------GP----ELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEE--eeHHH------HHhh---------------hH----HHHHhh
Confidence 36789999999999999999987 43333334556 55321 1110 01 122222
Q ss_pred CCceEEEEEcCCCCh---hhH-HHHHHhcCCCCCCCCCEEEEEeCChH---------HHhhcCCCCcceeCCCCChHHHH
Q 010799 426 YEKRYLVVLDDVHSP---GAW-YDLKRIFSPQASPIGSRVILITREAY---------VARSFSPSIFLHQLRPLNEEESG 492 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~---~~~-~~l~~~l~~~~~~~~~~iIiTtR~~~---------~~~~~~~~~~~~~l~~L~~~ea~ 492 (501)
.+- =+|++||++.. ..| ..+...+... ...|..+|+|++... +...+. .+.++++.+++.++-.
T Consensus 96 ~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~-~~~g~~ilits~~~p~~l~~~~~~L~SRl~-~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 96 EQY-ELVCLDDLDVIAGKADWEEALFHLFNRL-RDSGRRLLLAASKSPRELPIKLPDLKSRLT-LALVFQMRGLSDEDKL 172 (234)
T ss_pred hhC-CEEEEechhhhcCChHHHHHHHHHHHHH-HhcCCEEEEeCCCCHHHcCccCccHHHHHh-cCeeeecCCCCHHHHH
Confidence 222 26889999742 233 3344444331 234678888887532 111221 4578999999999999
Q ss_pred HHHHHhh
Q 010799 493 KLFQRRL 499 (501)
Q Consensus 493 ~Lf~~~~ 499 (501)
+++++++
T Consensus 173 ~il~~ka 179 (234)
T PRK05642 173 RALQLRA 179 (234)
T ss_pred HHHHHHH
Confidence 9988554
No 91
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.4e-06 Score=85.65 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=98.0
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+..++.|..++..+ .-.+...++|+.|+||||+|+.+++......... + .+++....+..+.
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~------~pCg~C~~C~~i~ 80 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A------TPCGVCESCVALA 80 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C------CcccccHHHHHhh
Confidence 3578999999999999999643 2345678999999999999999887422111100 0 0111111122221
Q ss_pred HHhccCC-----CC-CCCCHHHH---HHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799 401 RQLTQDE-----VD-EESSLDDL---ESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE 467 (501)
Q Consensus 401 ~~l~~~~-----~~-~~~~~~~~---~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~ 467 (501)
....... .. .....+++ .+.+... ..+++-++|+|+++. ...++.|+..+.. ....+.+|++| ..
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE--pp~~~~fIL~tte~ 158 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE--PPEHLIFIFATTEP 158 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--CCCCeEEEEEeCCh
Confidence 1100000 00 01122222 2222111 124556889999875 5667888888888 56666666555 44
Q ss_pred hHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
..+...+.+....+++.+++.++..+.+.+.
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence 4555444445678999999999988877654
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.3e-05 Score=78.39 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=102.0
Q ss_pred ccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccce----eEEEEeCCCCChHHH
Q 010799 320 EEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA----WANVYVSQDFDMRSV 395 (501)
Q Consensus 320 ~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~----w~~v~~~~~~~~~~~ 395 (501)
....+++|.++..+.|.+.+..+ .-++...++|+.|+||+++|..+.+..-......... -..+..... ...
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~~ 91 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HPV 91 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---ChH
Confidence 45678999999999999988553 3345789999999999999998876321111100000 000000000 111
Q ss_pred HHHHHHHhccC---------CC----CCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCC
Q 010799 396 FADILRQLTQD---------EV----DEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQAS 455 (501)
Q Consensus 396 ~~~i~~~l~~~---------~~----~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~ 455 (501)
.+.+...-.++ .. ......++ +..+.+++. +.+.++|+|+++. ....+.|+..+.. .
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe--p 168 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE--P 168 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc--C
Confidence 11111111000 00 00112333 334444443 3466899999986 4566788888777 5
Q ss_pred CCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 456 PIGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 456 ~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..++.+|++|.+. .+...+.+.-..+.+.+++.++..+++.+..
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 5677777777665 3433444456799999999999999988753
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.29 E-value=6.1e-06 Score=79.25 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=85.0
Q ss_pred ccceeecchhHHHHHHHhhc-------------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799 322 VTAVVSMENDILKLAKLTLN-------------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~ 388 (501)
..+++|.++..+.+.+.... ..+....+.++|++|+|||++|+.+++............+ +.+..
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~--v~~~~ 82 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHL--IEVER 82 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCce--EEecH
Confidence 45688988777776543211 1234467899999999999999998873211111111123 33321
Q ss_pred CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCC
Q 010799 389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIG 458 (501)
Q Consensus 389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~ 458 (501)
. + +..... ........+.+.... ..+|+||+++.. +.++.+...+.. ....
T Consensus 83 ~----~----l~~~~~------g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--~~~~ 143 (261)
T TIGR02881 83 A----D----LVGEYI------GHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--NRNE 143 (261)
T ss_pred H----H----hhhhhc------cchHHHHHHHHHhcc---CCEEEEechhhhccCCccchHHHHHHHHHHHHhc--cCCC
Confidence 1 1 111111 111122223332221 348899999752 244556665555 3333
Q ss_pred CEEEEEeCChHHHh------hcCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799 459 SRVILITREAYVAR------SFSP-SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 459 ~~iIiTtR~~~~~~------~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
..+|+++....... ...+ ....+.+++++.++-.+++.+.+.
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 45556654332211 1111 235689999999999999887653
No 94
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.25 E-value=2.5e-05 Score=75.77 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=85.9
Q ss_pred ceeecchhHHHHHHHhhc----------C---CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 324 AVVSMENDILKLAKLTLN----------S---SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~----------~---~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
+++|.++..+++.++... + ......+.++|++|+|||++|+.++.............| +.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~--v~v~~-- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHL--VSVTR-- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceE--EEecH--
Confidence 689988777776554210 0 112236899999999999999877662111111111134 44431
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~ 459 (501)
. ++...+.+. +.......+.+. ..-+|+||+++.. +.++.|...+.. ...+.
T Consensus 99 --~----~l~~~~~g~------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~--~~~~~ 161 (284)
T TIGR02880 99 --D----DLVGQYIGH------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--QRDDL 161 (284)
T ss_pred --H----HHhHhhccc------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc--CCCCE
Confidence 1 222222221 112222233322 2358899999732 234566666665 45566
Q ss_pred EEEEEeCChHHHhhcC-------CCCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAYVARSFS-------PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+||+++.......... .....+.+++++.+|-.+++...+
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 7777765432211111 024679999999999999988764
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.3e-05 Score=84.43 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=95.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|-+...+.|.+.+..+ .-.+.+.++|+.|+|||++|+.+++.......... ..++....+..+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~ 83 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVT 83 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHh
Confidence 3577899999989898888543 23468889999999999999998874321111100 0111111111111
Q ss_pred HHhccCC----CCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 010799 401 RQLTQDE----VDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-A 468 (501)
Q Consensus 401 ~~l~~~~----~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~ 468 (501)
.....+. .......+.+. .+.+.+ .+++-+||||+++. ...++.|+..+.. ......+|++|.+ .
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--P~~~~ifILaTt~~~ 160 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--PPARVTFVLATTEPH 160 (624)
T ss_pred cCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc--cCCCEEEEEecCChh
Confidence 1100000 00011122211 122222 24566899999986 3557788888776 4456666665554 4
Q ss_pred HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 469 YVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.+...+.+....+++.+++.++..+.+.+.
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~i 190 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKV 190 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHH
Confidence 444333334568899999999998887763
No 96
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=3.2e-06 Score=83.87 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=61.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC--CCHHHHHHHHHHHhcCCCCcC--cc--hH----HHHH
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE--LERRELVTDILKQVGGSKVEK--QL--DP----QKKL 226 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~~i~~~~~~~~~~~--~~--~~----~~~l 226 (501)
..++|+|.+|+|||||++.+++.-... +|+..+||+++++ .++.++++.++..+-....+. .. .+ .+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 568999999999999999999865443 8999999999976 799999999954433222111 11 11 1222
Q ss_pred HHH-ccCCeEEEEEecCCC
Q 010799 227 RKL-FTENRYLVVIINART 244 (501)
Q Consensus 227 ~~~-l~~kr~LlVlDdv~~ 244 (501)
... -.|++.+|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 368999999999864
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=8.2e-06 Score=86.57 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=98.8
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.+.+++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++......... +..+ ..+.....+..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~------~~cg~c~~C~~ 94 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI------DLCGVGEHCQA 94 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc------ccCcccHHHHH
Confidence 4578999999999999988643 2345789999999999999999987432211110 0001 01111111222
Q ss_pred HHHHhccCCC----CCCCCHHHHH---HHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799 399 ILRQLTQDEV----DEESSLDDLE---SEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE 467 (501)
Q Consensus 399 i~~~l~~~~~----~~~~~~~~~~---~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~ 467 (501)
+......+.. ......+++. +.+... ..+++-++|+|+++. ....+.|+..+.. ...++.+|++| ..
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--Pp~~~~fIl~tte~ 172 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--PPPHVKFIFATTEI 172 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--CCCCeEEEEEeCCh
Confidence 2211111000 0111223322 222111 123456899999976 3457788888877 56677776655 33
Q ss_pred hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...+.+....+++.+++.++..+.+.+.+
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 44444443355689999999999888887653
No 98
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1e-05 Score=86.43 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=97.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|.+...+.|..++..+ .-.+.+.++|+.|+|||++|+.+++......... -...++....+..+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHHhc
Confidence 477999999999998888543 2345678999999999999999987321111000 0011122223333332
Q ss_pred HhccCC---CC-CCCCHHHHH---HHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHH
Q 010799 402 QLTQDE---VD-EESSLDDLE---SEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYV 470 (501)
Q Consensus 402 ~l~~~~---~~-~~~~~~~~~---~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~ 470 (501)
....+. .. .....+++. ..+... ...++-++|||+++. ...++.|+..+.. ....+.+|++|.+ ..+
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--pp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--PPPHAIFILATTEVHKV 163 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--CCCCeEEEEEeCChhhh
Confidence 221110 00 112222222 222111 124567899999985 3557788888777 5566666666644 334
Q ss_pred HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+.+....+.+.+++.++....+.+.+
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 43333345678899999988887777654
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=8.5e-06 Score=76.54 Aligned_cols=139 Identities=15% Similarity=0.211 Sum_probs=76.0
Q ss_pred cccee-ecchhH-HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 322 VTAVV-SMENDI-LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fv-GR~~~~-~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
.++|+ |..+.. ..+.++.. .....+.+.|+|++|+|||+||..+++ .....-....+ +++.... . .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~--~~~~~~~~~~~--i~~~~~~---~---~- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVA--DASYGGRNARY--LDAASPL---L---A- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEE--EehHHhH---H---H-
Confidence 45566 444443 34444433 233456899999999999999999988 33221122333 4432210 0 0
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCC-EEEEEeCChHHHh----
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGS-RVILITREAYVAR---- 472 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~-~iIiTtR~~~~~~---- 472 (501)
+ .+. ...-+||+||++.. .....+...+... ...+. .+|+|++......
T Consensus 85 ---~-------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~-~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 85 ---F-------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRV-RAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred ---H-------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHH-HHcCCcEEEEeCCCCHHhCCCCH
Confidence 0 111 12347889999753 3334454444331 12233 4666766433221
Q ss_pred ----hcCCCCcceeCCCCChHHHHHHHHH
Q 010799 473 ----SFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 473 ----~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
.+. ....+++++|+.++-..++.+
T Consensus 141 ~L~sr~~-~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 141 DLRTRLG-WGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred HHHHHHh-cCeEEEecCCCHHHHHHHHHH
Confidence 221 347899999999887776655
No 100
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=6.3e-05 Score=80.67 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=87.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc---eeEEEEcCC---CCCHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ---CRAWVPVPE---ELERRELVT 205 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~---~~~wv~vs~---~~~~~~l~~ 205 (501)
.++++|.+..+..+.+.+... ....+.|+|.+|+||||||+.+++......++. ..-|+.+.. ..+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 357899999999888877543 345789999999999999999987654433332 234665532 122332221
Q ss_pred HH---------------HHHhcCCC-----------------CcC--cchHHHHHHHHccCCeEEEEEecCCCh--hHHH
Q 010799 206 DI---------------LKQVGGSK-----------------VEK--QLDPQKKLRKLFTENRYLVVIINARTP--DIWD 249 (501)
Q Consensus 206 ~i---------------~~~~~~~~-----------------~~~--~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~ 249 (501)
.+ +...+... +-. ....+..|.+.+++++++++.|+.|.. ..|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11111100 001 112588999999999999998877753 3488
Q ss_pred HHhhcCCCCCCCcEEEE--Eecccc
Q 010799 250 ILKYLFPNSSNGSRVIL--SFQEAD 272 (501)
Q Consensus 250 ~l~~~~~~~~~gs~iiv--Ttr~~~ 272 (501)
.++..+....+..-|++ ||++..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hhhhhcccCccceEEEEEecccccc
Confidence 88877776666555555 566544
No 101
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.20 E-value=7.5e-06 Score=84.70 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=91.8
Q ss_pred ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCC-----ccceeEEEE
Q 010799 322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-----PCRAWANVY 385 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-----~~~~w~~v~ 385 (501)
..++.|.+..++++.+.+.. +-..++-+.|+|++|+|||++|+.+++ .....+ ....| ++
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~f--l~ 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYF--LN 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeE--Ee
Confidence 46688999999999887632 113446799999999999999999998 433331 22334 44
Q ss_pred eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh---------hh-----HHHHHHhc
Q 010799 386 VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP---------GA-----WYDLKRIF 450 (501)
Q Consensus 386 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~---------~~-----~~~l~~~l 450 (501)
+... +++....... ......+++..++.. .+++++|+||+++.. .+ +..|+..+
T Consensus 257 v~~~--------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 257 IKGP--------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ccch--------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 4321 1111110000 001122333333322 246899999999852 11 23444444
Q ss_pred CCCCCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 451 SPQASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 451 ~~~~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.......+..||.||-... +...+- .-...+++++++.++..++|.+++
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 4310123344444553332 222222 134569999999999999998875
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.19 E-value=9.8e-06 Score=89.84 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=85.9
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||+.++.++...|.... ...+.++|++|+|||++|..++. ++.... ...+| .+..+. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~-~l~l~~------l- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLL-SLDLGL------L- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEE-Eeehhh------h-
Confidence 569999999999999886533 34667999999999999999888 432221 12222 011110 0
Q ss_pred HHHHHHhccCCCCCCCCHHH-HHHHHHHhc-CCceEEEEEcCCCCh-------hhHH---HHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDD-LESEFTGIL-YEKRYLVVLDDVHSP-------GAWY---DLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l-~~~r~LlVlDnv~~~-------~~~~---~l~~~l~~~~~~~~~~iIiT 464 (501)
..+... ....++ +...+.+.- .+.+++|++|+++.. ...+ .|++.+.. ...++|-|
T Consensus 255 ------~ag~~~--~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~----G~l~~Iga 322 (852)
T TIGR03345 255 ------QAGASV--KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR----GELRTIAA 322 (852)
T ss_pred ------hccccc--chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC----CCeEEEEe
Confidence 000000 001111 222222221 146799999998763 1122 34444433 23556666
Q ss_pred eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHH
Q 010799 465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
|....... .+.+...++.+++++.+++.++|..
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 66543211 1112456899999999999999753
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.9e-05 Score=80.88 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=96.5
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|-+...+.|...+..+ .-.+...++|+.|+|||++|+.+++..-..+..+.. ++........+.
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~ 81 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSAL 81 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHh
Confidence 3577999999999999988543 334577999999999999999887632111100000 000000000000
Q ss_pred HHhccCC---C-CCCCCHHHHHHHHHHh--c--CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799 401 RQLTQDE---V-DEESSLDDLESEFTGI--L--YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y 469 (501)
Q Consensus 401 ~~l~~~~---~-~~~~~~~~~~~~l~~~--l--~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~ 469 (501)
....... . ......+++.+.+... . .+++-++|+|+++. .+.++.|+..+.. .+..+++|++|.+. .
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE--pp~~t~FIL~ttd~~k 159 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE--PPSYVKFILATTDPLK 159 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh--cCCceEEEEEECChhh
Confidence 0000000 0 0011223333333221 1 14566889999986 4567788888887 56677777777653 3
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+.+.+
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHH
Confidence 333333355799999999999888876543
No 104
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.19 E-value=2.1e-06 Score=81.13 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=59.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCC------HHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESS------LDDL 417 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~ 417 (501)
-..++|.|++|+|||||++.+++..... +|+..+| +.+... .++.+++..+...+-..... .+. ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~--v~vI~er~~ev~el~~~I~~~~v~~~~~-~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLI--VLLIDERPEEVTDMQRSVKGEVIASTFD-EPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEE--EEEccCCCccHHHHHHHhccEEEEecCC-CCHHHHHHHHHHH
Confidence 3689999999999999999999854333 7899999 886555 68888888883332222111 111 1122
Q ss_pred HHHHHHhc-CCceEEEEEcCCCC
Q 010799 418 ESEFTGIL-YEKRYLVVLDDVHS 439 (501)
Q Consensus 418 ~~~l~~~l-~~~r~LlVlDnv~~ 439 (501)
......+. .+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 23333322 46899999999864
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.18 E-value=7.9e-06 Score=90.83 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=87.8
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CC-ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NF-PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f-~~~~w~~v~~~~~~~~~~~~ 396 (501)
..++||+++++++.+.|.... ...+.++|++|+|||++|..++. +... .. ...+| .+ ++..+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~---~l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVI---TL----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEE---Ee----eHHHH-
Confidence 458999999999999996532 34667999999999999999887 3321 11 23344 11 11111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHH-HHHHhcCCceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEEe
Q 010799 397 ADILRQLTQDEVDEESSLDDLES-EFTGILYEKRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILIT 465 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiTt 465 (501)
+.+... ....++.++ .+.+.....+.+|++|+++.. +..+.|.+.+.. ...++|-+|
T Consensus 247 ------~ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r----g~l~~IgaT 314 (821)
T CHL00095 247 ------LAGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR----GELQCIGAT 314 (821)
T ss_pred ------hccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC----CCcEEEEeC
Confidence 111111 112222232 232222346799999998641 122334444433 235566666
Q ss_pred CChHHHh------hcCCCCcceeCCCCChHHHHHHHHH
Q 010799 466 REAYVAR------SFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 466 R~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
....... .+......+.+++.+.++...++..
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 6554322 1111456789999999999888764
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.1e-05 Score=81.14 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=93.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
...+++|.+..+..|.+.+..+ .-.+...++|++|+|||++|+.+++.......- +...+ ........+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c---------~~c~~C~~i 84 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC---------NQCASCKEI 84 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC---------cccHHHHHH
Confidence 3578999999999999988542 233678899999999999999987732111100 00000 000000000
Q ss_pred HHH-----hccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 400 LRQ-----LTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 400 ~~~-----l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
... +..... .....+++.. +.+.+ .+.+-++|+|+++. ....+.|+..+.. ....+.+|++|.+
T Consensus 85 ~~~~~~d~~~i~g~-~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe--p~~~~~~Il~t~~ 160 (451)
T PRK06305 85 SSGTSLDVLEIDGA-SHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE--PPQHVKFFLATTE 160 (451)
T ss_pred hcCCCCceEEeecc-ccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc--CCCCceEEEEeCC
Confidence 000 000000 0011122211 11111 24567889999875 3456778888877 5566767766643
Q ss_pred -hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 -AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+...+.+....+++.+++.++..+.+.+.+
T Consensus 161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH
Confidence 33333333355689999999999888776543
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.17 E-value=3.7e-05 Score=77.83 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=90.7
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|.+...++|.+.+.. +-..++.+.++|++|+|||+||+.+++ .....| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f-------i~i~~- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF-------IRVVG- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-------EEEeh-
Confidence 356799999999998876631 113457899999999999999999998 333332 22211
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------h----hHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------G----AWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~----~~~~l~~~l~~~ 453 (501)
.. +.....+ .....+...+.......+.+|+||+++.. . .+..++..+...
T Consensus 213 ---s~----l~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ---SE----FVQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ---HH----HHHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 11 1111111 11122233333334457899999997742 0 122333333321
Q ss_pred CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..+|.||.... +...+- .-...+.++..+.++..++|....
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 1234566777776543 222221 134578999999999888887543
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.6e-05 Score=79.20 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=93.2
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc--ccC-CccceeEEEEe-----CCCCCh
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT--KKN-FPCRAWANVYV-----SQDFDM 392 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~--~~~-f~~~~w~~v~~-----~~~~~~ 392 (501)
...+++|.+.....|...+..+ .-.+...++|+.|+||||+|+.++..... ... ..|... .++ +...++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c--~nc~~i~~g~~~d~ 90 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC--ENCVEIDKGSFPDL 90 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc--HHHHHHhcCCCCcE
Confidence 3567999999999999999653 23456788999999999999998773211 000 001000 000 000010
Q ss_pred HHHHHHHHHHhccCCCCCCCCHH---HHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 393 RSVFADILRQLTQDEVDEESSLD---DLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 393 ~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
.. +... .....+ .+.+.+... ..+++-++|+|+++. ....+.|+..+.. .++.+.+|++|.
T Consensus 91 ~e--------idaa---s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe--pp~~~v~Il~tt 157 (486)
T PRK14953 91 IE--------IDAA---SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE--PPPRTIFILCTT 157 (486)
T ss_pred EE--------EeCc---cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc--CCCCeEEEEEEC
Confidence 00 0000 011122 222222211 124567999999986 3456778888777 555566665553
Q ss_pred -ChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 467 -EAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 467 -~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+...+.+....+.+.+++.++....+.+.+
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence 334433333245689999999999888777654
No 109
>CHL00181 cbbX CbbX; Provisional
Probab=98.15 E-value=7.1e-05 Score=72.59 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=86.0
Q ss_pred cceeecchhHHHHHHHhh---c---------C-CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 323 TAVVSMENDILKLAKLTL---N---------S-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~---~---------~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
.+++|.++..+++.++.. - . ......+.++|++|+|||++|+.++........-....| +.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~--~~v~~- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHL--LTVTR- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCce--EEecH-
Confidence 358888777665544421 0 0 112245889999999999999999773111111111124 44331
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIG 458 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~ 458 (501)
. ++...+.+.. .......+... ..-+|+||+++.. +....|...+.. ...+
T Consensus 100 ---~----~l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~--~~~~ 161 (287)
T CHL00181 100 ---D----DLVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN--QRDD 161 (287)
T ss_pred ---H----HHHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc--CCCC
Confidence 1 2222222111 11222233332 2248999999642 334555555555 4456
Q ss_pred CEEEEEeCChHHHhh-------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 459 SRVILITREAYVARS-------FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 459 ~~iIiTtR~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..||+++........ .+.....+.+++++.+|..+++.+.+
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 677777754333211 11145689999999999999988765
No 110
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=3.1e-05 Score=79.69 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=87.9
Q ss_pred ccccee-ecchhHH-HHHHHhhc-C----CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799 321 EVTAVV-SMENDIL-KLAKLTLN-S----SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR 393 (501)
Q Consensus 321 ~~~~fv-GR~~~~~-~l~~~L~~-~----~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~ 393 (501)
.+++|+ |-...+. .....+.. . ......+.|+|++|+|||+|+..+++ ........+++ ++. .
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~y--i~~------~ 178 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILY--VRS------E 178 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEE--eeH------H
Confidence 456675 7665543 22222221 1 11235688999999999999999998 44333233344 432 2
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799 394 SVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA- 468 (501)
Q Consensus 394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~- 468 (501)
.+...+...+... . ...+++... ..-+|++||++.. ...+++...+... ...|..||+||...
T Consensus 179 ~f~~~~~~~l~~~------~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l-~~~~k~IIlts~~~p 246 (445)
T PRK12422 179 LFTEHLVSAIRSG------E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSL-HTEGKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHhcc------h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHH-HHCCCcEEEecCCCH
Confidence 3333444443321 1 223444433 3448888998753 1233444433321 12356788888542
Q ss_pred H--------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 Y--------VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
. +...+. .+.++++++++.++-.+++.+++
T Consensus 247 ~~l~~l~~rL~SR~~-~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 247 QDLKAMEERLISRFE-WGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred HHHhhhHHHHHhhhc-CCeEEecCCCCHHHHHHHHHHHH
Confidence 1 222222 45799999999999999998765
No 111
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.14 E-value=8.5e-05 Score=76.51 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP 476 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~ 476 (501)
+...-.+.+.|.-++-+||.|+.-+. .+.-.++..+.. .-|...|+.|.+-.+...++.
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~---e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE---ELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH---HhCCEEEEEeCCHHHHHhhCc
Confidence 34445566666677889999997652 222233333333 457899999999988887763
No 112
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=2.1e-05 Score=80.98 Aligned_cols=158 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred ccccee-ecchhHH--HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHH
Q 010799 321 EVTAVV-SMENDIL--KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 321 ~~~~fv-GR~~~~~--~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|+ |-..... ...+...+ ......+.|||++|+|||.|+..+++ ....... .+.| +++ .++
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~y--i~~------~~f 171 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMY--ITS------EKF 171 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence 356666 6443322 22232322 22244699999999999999999998 5444332 2344 443 334
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---h-hHHHHHHhcCCCCCCCCCEEEEEeC-ChH-
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---G-AWYDLKRIFSPQASPIGSRVILITR-EAY- 469 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~-~~~~l~~~l~~~~~~~~~~iIiTtR-~~~- 469 (501)
+.++...+... +. ..+.+......-+|+|||++.. . ...++...+... ...+..||+||. .+.
T Consensus 172 ~~~~~~~~~~~------~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l-~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 172 LNDLVDSMKEG------KL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQK 240 (440)
T ss_pred HHHHHHHHhcc------cH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHH-HHcCCeEEEECCCCHHH
Confidence 44554444321 12 2233333334558999999752 1 123343333221 123457888874 332
Q ss_pred ---HHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799 470 ---VARSFSP---SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 470 ---~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+...+.+ .+.++.+++++.+.-.+++.+.+.
T Consensus 241 l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 1122211 456889999999999999988753
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=1.9e-05 Score=84.65 Aligned_cols=173 Identities=19% Similarity=0.187 Sum_probs=90.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---ccceeEEEEeC--CC-CChHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PCRAWANVYVS--QD-FDMRSV 395 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~~~w~~v~~~--~~-~~~~~~ 395 (501)
.++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ....| +.+. .. .+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f--v~i~~~~l~~d~~~i 228 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF--VEVDGTTLRWDPREV 228 (615)
T ss_pred HHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe--EEEechhccCCHHHH
Confidence 45689999999999888743 344679999999999999999987643222222 12345 4332 11 111111
Q ss_pred HHHHH---------------HHhccCCCC---------------CCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--hhh
Q 010799 396 FADIL---------------RQLTQDEVD---------------EESS-LDDLESEFTGILYEKRYLVVLDDVHS--PGA 442 (501)
Q Consensus 396 ~~~i~---------------~~l~~~~~~---------------~~~~-~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~ 442 (501)
...++ ...+..... +... .......+.+.+.++++.++-|..|. ...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 11111 000000000 0000 11234455555555555555444433 123
Q ss_pred HHHHHHhcCCCCCCCCCEEEE--EeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 443 WYDLKRIFSPQASPIGSRVIL--ITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 443 ~~~l~~~l~~~~~~~~~~iIi--TtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
|..+...+.. ..+...+++ ||++.. +...+.+....+.+.+++.+|.++++.+.+.
T Consensus 309 ~~~ik~~~~~--~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 309 PKYIKKLFEE--GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred chhhhhhccc--CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 4444444444 333344554 555432 2222222334778999999999999988653
No 114
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.14 E-value=8.2e-06 Score=82.32 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=73.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
..++++.+...+.+...|.. .+.|.++|++|+|||++|+.+.+.......|+...||++++.++..+++....-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-
Confidence 35688889999999999984 3467889999999999999998765555678889999999999988876433110
Q ss_pred cCCCCcCcchHHHHHHHHcc--CCeEEEEEecCCC
Q 010799 212 GGSKVEKQLDPQKKLRKLFT--ENRYLVVIINART 244 (501)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~ 244 (501)
+........-..+.+....+ ++.++||+|++-.
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 00000001111222333322 4689999999864
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=1.3e-05 Score=87.21 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=87.2
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-----C-ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-----F-PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-----f-~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||+.++.++.+.|.... ...+.|+|++|+|||++|..++. .+... + .+.+| . .++..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~---~----l~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIY---S----LDIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEE---e----ccHHHH-
Confidence 469999999999999886632 24557899999999999999887 32211 1 33334 1 111111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh----------hhHH-HHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP----------GAWY-DLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~----------~~~~-~l~~~l~~~~~~~~~~iIiT 464 (501)
+.+... ....+.....+.+.+ ...+.+|+||+++.. .+.. .+.+.+.. ...++|-+
T Consensus 254 ------laG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~----g~i~vIgA 321 (758)
T PRK11034 254 ------LAGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS----GKIRVIGS 321 (758)
T ss_pred ------hcccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC----CCeEEEec
Confidence 111110 112222333332323 345679999999742 1222 23333333 23445555
Q ss_pred eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|....+.. .+.+....+.+++++.+++.+++...
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 55443211 11124568999999999999998854
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.2e-05 Score=81.76 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=95.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
...+++|.+...+.|...+..+ .-.+.+.++|+.|+|||++|+.+.........- .... | .....+..+
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-----C----g~C~sC~~~ 84 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA-----C----NECESCVAF 84 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC-----C----CcchHHHHH
Confidence 3577999999999999998543 334678999999999999999887632111000 0000 0 000000000
Q ss_pred HHH-------hccCCCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-
Q 010799 400 LRQ-------LTQDEVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT- 465 (501)
Q Consensus 400 ~~~-------l~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt- 465 (501)
... +... .....+++...+.+. ..+.+-++|+|+++. ...++.|+..+.. ....+.+|++|
T Consensus 85 ~~~~~~n~~~ld~~---~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe--pp~~tifIL~tt 159 (614)
T PRK14971 85 NEQRSYNIHELDAA---SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE--PPSYAIFILATT 159 (614)
T ss_pred hcCCCCceEEeccc---ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC--CCCCeEEEEEeC
Confidence 000 0000 011122222222111 123456889999886 4567888888888 55666666554
Q ss_pred CChHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 466 REAYVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 466 R~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
....+...+.+...++++.+++.++....+.+.
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYV 192 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHH
Confidence 445555554446678999999999988877754
No 117
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.12 E-value=1.8e-06 Score=78.13 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=32.4
Q ss_pred ccccchhhHHHHHHHHh-cCCCCeeEEEEEeeCChhhHHHHhhhhcccc
Q 010799 134 GILDLNKEVNKLADFLI-RSHSSLFTISVVDVAGSVMTTDLWKSYECET 181 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~-~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 181 (501)
.|+||+++.++|...|. ......+.+.|+|.+|+|||+|.+.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999994 2234578999999999999999999885433
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=3.6e-05 Score=82.41 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=93.9
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+...+.|...+..+ .-.+...++|+.|+|||++|+.++...-..+... .+ -.| ..+....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~--~pC-------~~C~~~~ 83 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL--EPC-------QECIENV 83 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC--Cch-------hHHHHhh
Confidence 3577999999999999999643 3346788999999999999999877321111100 00 000 0000000
Q ss_pred H-H---hccCCCCCCCCHH---HHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCChH
Q 010799 401 R-Q---LTQDEVDEESSLD---DLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREAY 469 (501)
Q Consensus 401 ~-~---l~~~~~~~~~~~~---~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~~ 469 (501)
. . +..... .....+ ++.+.+... ..+++-++|+|+++. ...++.|+..+-. .+..+.+|+ |+....
T Consensus 84 ~~~~Dvieidaa-sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE--PP~~tifILaTte~~K 160 (725)
T PRK07133 84 NNSLDIIEMDAA-SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE--PPKHVIFILATTEVHK 160 (725)
T ss_pred cCCCcEEEEecc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--CCCceEEEEEcCChhh
Confidence 0 0 000000 001122 222222211 124566899999975 4567788888777 455555554 444445
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+.+....+++.+++.++..+.+...
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence 54443335568999999999988877653
No 119
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.11 E-value=4.5e-06 Score=78.38 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=35.6
Q ss_pred cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799 135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 180 (501)
|+||++++++|.+++..+ ....+.|+|..|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 689999999999999864 35678899999999999999998643
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.11 E-value=1.4e-05 Score=81.41 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=91.2
Q ss_pred cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|.+..+++|.+.+... -..++.+.|+|++|+|||++|+.+++ .....| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-------i~V~~s 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-------LRVVGS 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-------EEEecc
Confidence 3467899999999998877321 12346789999999999999999998 444443 222111
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~ 453 (501)
.+. ....+ .....+...+.....+.+.+|+||+++... .+..++..+...
T Consensus 252 ----eL~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 ----ELI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ----hhh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 111 11111 111222233333334567899999976410 112233222221
Q ss_pred CCCCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||..... ...+- .....+.+++.+.++..++|..++
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 01335677777765442 22221 135689999999999999998765
No 121
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.11 E-value=0.00024 Score=75.16 Aligned_cols=23 Identities=35% Similarity=0.733 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|+.|+|||||++.++.
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 36999999999999999999876
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=2.7e-05 Score=80.32 Aligned_cols=159 Identities=14% Similarity=0.224 Sum_probs=90.2
Q ss_pred ccccee-ecchh--HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHH
Q 010799 321 EVTAVV-SMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 321 ~~~~fv-GR~~~--~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|+ |.... ...........+.....+.|+|..|+|||.|+..+++ ....... .+++ ++. .++
T Consensus 113 tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~y--v~~------~~f 182 (450)
T PRK14087 113 TFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSY--MSG------DEF 182 (450)
T ss_pred chhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence 456665 55443 2222222222222335689999999999999999988 4433222 2233 332 345
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh---
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA--- 468 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~--- 468 (501)
...+...+.... +....+.+.+.+ .-+|||||++.. ...+.+...+... ...+..||+|+...
T Consensus 183 ~~~~~~~l~~~~--------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~-~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 183 ARKAVDILQKTH--------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNF-IENDKQLFFSSDKSPEL 252 (450)
T ss_pred HHHHHHHHHHhh--------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHH-HHcCCcEEEECCCCHHH
Confidence 555555544211 122334444432 348889999752 2234444443331 23455788886543
Q ss_pred ------HHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 469 ------YVARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 469 ------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
.+...+. .+.++.+++++.++-.+++.+++.
T Consensus 253 l~~l~~rL~SR~~-~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 253 LNGFDNRLITRFN-MGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred HhhccHHHHHHHh-CCceeccCCcCHHHHHHHHHHHHH
Confidence 1222332 577899999999999999988763
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.4e-05 Score=82.18 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=94.8
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+...+.|...+..+ .-.+...++|+.|+|||++|+.+++.....+.... .+++....+..+.
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---------~~c~~c~~c~~i~ 83 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---------EPCNVCPPCVEIT 83 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---------CCCCccHHHHHHh
Confidence 3578999999999999988543 23467789999999999999998874211111100 0011111111111
Q ss_pred HHhccCC---C-CCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799 401 RQLTQDE---V-DEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY 469 (501)
Q Consensus 401 ~~l~~~~---~-~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~ 469 (501)
.--..+. . ......++ +...+... ..+++-++|+|+++. ....+.|+..+.. ....+.+|++| ....
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--pp~~~~fIl~t~~~~k 161 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--PPPHVKFIFATTEPHK 161 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--CCCCeEEEEEeCChhh
Confidence 1000000 0 00111222 22222211 123456889999976 4557888888877 55666666555 4455
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+.+....+++.+++.++....+...
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i 190 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYI 190 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHH
Confidence 55544435568889999998887776643
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.10 E-value=7.4e-05 Score=71.39 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=78.3
Q ss_pred chhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHcccccccCCc------cceeEEEEeCCCCChHHHHHHHHH
Q 010799 329 ENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP------CRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 329 ~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~------~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
.+.+++|.+++..+ ..+.+.+.|+|.+|.|||+++++|.. .+-..++ .++. +-+...++...++..|+.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~--~hp~~~d~~~~~~PVv~--vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR--LHPPQSDEDAERIPVVY--VQMPPEPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH--HCCCCCCCCCccccEEE--EecCCCCChHHHHHHHHH
Confidence 35566677777543 45668999999999999999999986 3322221 2444 667888899999999999
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
.++.+... ..+.........+.++. .--+||||++.+
T Consensus 119 ~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 119 ALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99998763 44556666666677765 345899999987
No 125
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=4.2e-05 Score=75.55 Aligned_cols=125 Identities=11% Similarity=0.150 Sum_probs=84.3
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc----cccccccceeEEEE-cCCCCCHHHHHHHH
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC----ETVKEYFQCRAWVP-VPEELERRELVTDI 207 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~----~~v~~~F~~~~wv~-vs~~~~~~~l~~~i 207 (501)
.+++|.+..++.|.+.+..+. -.+..-++|+.|+||||+|+.++.. .....|.|...|.. -+......+ ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 468899999999999997543 3456788999999999999888752 22345778777765 334444444 3334
Q ss_pred HHHhcCCCCcCcchHHHHHHHHccCCeEEEEEe-cCCChhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 208 LKQVGGSKVEKQLDPQKKLRKLFTENRYLVVII-NARTPDIWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD-dv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
.+.+..... ..++|++||=+ |..+...|+.|...+..-..++.+|++|.+.+
T Consensus 82 ~~~~~~~p~-------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKKPY-------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcCcc-------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 444432111 12445544444 45677889999999988778999999886654
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=6.8e-05 Score=79.24 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=97.4
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|-+.....|...+..+ .-.+...++|+.|+|||++|+.+++..-....... .. +........+.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-----~p----C~~C~~C~~i~ 83 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-----MP----CGECSSCKSID 83 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-----CC----CccchHHHHHH
Confidence 3578999999999999999653 34467899999999999999999874221111100 00 00001111111
Q ss_pred HHhccC---CC-CCCCCHHHHHHHH---HHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799 401 RQLTQD---EV-DEESSLDDLESEF---TGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY 469 (501)
Q Consensus 401 ~~l~~~---~~-~~~~~~~~~~~~l---~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~ 469 (501)
..-... .. ......+++.+.. ... ..+++-++|+|+++. ...++.|+..+.. .+..+.+|++|.+ ..
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--pp~~~vfI~~tte~~k 161 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--PPPYIVFIFATTEVHK 161 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--CCCCEEEEEecCChHH
Confidence 110000 00 0012233333222 111 134566899999986 4557788888877 5666666666544 34
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+.+.+
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHH
Confidence 444333355678999999998887776643
No 127
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.05 E-value=7.5e-05 Score=78.51 Aligned_cols=157 Identities=12% Similarity=0.126 Sum_probs=88.3
Q ss_pred ccccceeecchhHHHHHHHhh---c-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 320 EEVTAVVSMENDILKLAKLTL---N-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 320 ~~~~~fvGR~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
....+++|-++..+++.+.+. . +...++-+.++|++|+|||+||+.++. ...-. | +.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~--~~~~~-----~--~~i~~- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVP-----F--FSISG- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCC-----e--eeccH-
Confidence 345788998887776655442 1 123446799999999999999999988 33222 2 33321
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~ 453 (501)
.+ +..... ......+...+.......+.+|+||+++... .+..++..+...
T Consensus 122 ---~~----~~~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 122 ---SD----FVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ---HH----HHHHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 11 111111 1122333444444445667899999996521 112233333221
Q ss_pred CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||.... +...+. .-...+.++..+.++-.++|..++
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 1233445555665432 222221 135689999999998888887654
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.05 E-value=3.2e-05 Score=86.12 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=85.4
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||+.++.++...|.... ...+.++|++|+|||+||..++. +..... ...+| .+.++ .++
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~-~l~l~------~l~ 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVL-ALDMG------ALV 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEE-EEehh------hhh
Confidence 559999999999999986533 34677999999999999999887 332211 12222 02211 111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHH-HHHHhc-CCceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLES-EFTGIL-YEKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~-~l~~~l-~~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
.+... ....++.++ .+.+.. ...+.+|++|+++... ..+.|.+.+.. ...++|-+
T Consensus 247 -------ag~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~----g~l~~Iga 313 (857)
T PRK10865 247 -------AGAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----GELHCVGA 313 (857)
T ss_pred -------hccch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc----CCCeEEEc
Confidence 00000 011222222 222222 2467999999987631 22334443333 23455555
Q ss_pred eCChHHH------hhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYVA------RSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|...... ....+....+.+...+.++..+++...
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 5544431 111113346778888999999988653
No 129
>PRK06620 hypothetical protein; Validated
Probab=98.03 E-value=4.3e-05 Score=70.77 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=66.0
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
+.+.|||++|+|||+|+..+++. ... .+ +... ... + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~--~~~-----~~--~~~~--~~~----------------------~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL--SNA-----YI--IKDI--FFN----------------------E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc--cCC-----EE--cchh--hhc----------------------h-------hHH-
Confidence 67999999999999999988773 221 22 2200 000 0 001
Q ss_pred CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChH-------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAY-------VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...-+|++||++...+ ..+...+... ...|..+|+|++... +...+. .+.+++++++++++-.+++.+++
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~-~e~g~~ilits~~~p~~l~l~~L~SRl~-~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNII-NEKQKYLLLTSSDKSRNFTLPDLSSRIK-SVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHH-HhcCCEEEEEcCCCccccchHHHHHHHh-CCceEeeCCCCHHHHHHHHHHHH
Confidence 1224788999985422 2233322211 134678999987443 222222 56699999999999888888765
No 130
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=0.00064 Score=72.30 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+...-.+...+..++-+|++|+--+ ......+...+.. . +..||++|.+......++
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~--~--~~tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEK--Y--EGTLIFVSHDREFVSSLA 502 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEeCCHHHHHHhC
Confidence 3444455555566778999999765 2333445555555 3 347999999988766654
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.02 E-value=4.6e-05 Score=78.10 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=76.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
...+.|+|++|+|||.|+..+++ ....... .+++ +++ .+....+...+... ..+. +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~y--i~~------~~~~~~~~~~~~~~------~~~~----~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVY--VSS------EKFTNDFVNALRNN------KMEE----FKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEE--EEH------HHHHHHHHHHHHcC------CHHH----HHH
Confidence 35789999999999999999998 4444432 2334 432 23334444444321 1222 233
Q ss_pred hcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-H--------HHhhcCCCCcceeCCCCChHH
Q 010799 424 ILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA-Y--------VARSFSPSIFLHQLRPLNEEE 490 (501)
Q Consensus 424 ~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~--------~~~~~~~~~~~~~l~~L~~~e 490 (501)
.+.+ .-+|+|||++.. ...+.+...+... ...+..+|+|+... . +...+. .+.++.+++++.++
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~-~~~~~~iiits~~~p~~l~~l~~~l~SRl~-~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNAL-HENGKQIVLTSDRPPKELPGLEERLRSRFE-WGLVVDIEPPDLET 272 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHH-HHCCCCEEEecCCCHHHHhhhhhhhhhhcc-CCeEEEeCCCCHHH
Confidence 3322 238899999752 1223344433321 12356678877642 2 111221 34679999999999
Q ss_pred HHHHHHHhhc
Q 010799 491 SGKLFQRRLK 500 (501)
Q Consensus 491 a~~Lf~~~~~ 500 (501)
-.+++.+++.
T Consensus 273 r~~il~~~~~ 282 (405)
T TIGR00362 273 RLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=9.9e-05 Score=78.27 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+...+.|.+.+..+ .-.+...++|+.|+|||++|+.+.+.....+.-.. .+++....+..+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~---------~pC~~C~~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG---------EPCNECEICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCccHHHHHHh
Confidence 3578999999999999999653 23467888999999999999998763211111000 0111111222221
Q ss_pred HHhccCC----CCCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799 401 RQLTQDE----VDEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY 469 (501)
Q Consensus 401 ~~l~~~~----~~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~ 469 (501)
.....+. .......++ +...+... ..++.-++|+|+++. ...++.|+..+.. .+..+..|++| ....
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe--pp~~~ifIlatt~~~k 161 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE--PPAHVIFILATTEPHK 161 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--CCCCeEEEEEeCChhh
Confidence 1110000 000112222 22222211 124566889999985 4567888888777 45555555544 4444
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+.+....+++.+++.++..+.+...+
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence 444333345678899999988887776543
No 133
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=9.2e-05 Score=72.70 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=99.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-------------CCccceeEEEEeCC
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-------------NFPCRAWANVYVSQ 388 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-------------~f~~~~w~~v~~~~ 388 (501)
..+++|.+...+.|.+.+..+ .-++...++|+.|+||+++|..++...-... ..+...| +.-..
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~--i~p~~ 79 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW--VEPTY 79 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE--Eeccc
Confidence 457899999999999998543 3347999999999999999988766321111 1122233 22100
Q ss_pred CCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCE
Q 010799 389 DFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSR 460 (501)
Q Consensus 389 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~ 460 (501)
..+-...-...+...+..... .....++ +..+.+++. +.+-++|+|+++. ....+.|+..+-. .+ .+.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--Pp-~~~ 155 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--PG-NGT 155 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--CC-CCe
Confidence 000000000111111100000 0112222 234444443 3466889999876 4567888888888 44 555
Q ss_pred EEEEe-CChHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 461 VILIT-REAYVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 461 iIiTt-R~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+|++| ....+...+.+....+++++++.++..+.+.+.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 55555 444455555556789999999999999988865
No 134
>PRK13409 putative ATPase RIL; Provisional
Probab=97.99 E-value=0.00071 Score=72.44 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=65.3
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccce-eE-EEE-eCCC------CChHHHH-------------HHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WA-NVY-VSQD------FDMRSVF-------------ADILRQLT 404 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~-~v~-~~~~------~~~~~~~-------------~~i~~~l~ 404 (501)
.+++|.|+.|+|||||++.++.. .... .+.+ |+ .+. +.+. .++.+.+ .+++..+.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl--~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGV--LKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 59999999999999999998863 2111 1111 10 011 1111 1222211 12222222
Q ss_pred cCCC-----CCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 405 QDEV-----DEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 405 ~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.... ...+.-+...-.+...+...+-+++||+--+ ......+...+.......+..||++|.+...+..+.
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 2110 0122333444455666667788999999654 222333333333310123678999999987666544
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.98 E-value=6.3e-05 Score=78.12 Aligned_cols=157 Identities=16% Similarity=0.238 Sum_probs=87.1
Q ss_pred ccccee-ecchh--HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc--ceeEEEEeCCCCChHHH
Q 010799 321 EVTAVV-SMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC--RAWANVYVSQDFDMRSV 395 (501)
Q Consensus 321 ~~~~fv-GR~~~--~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~--~~w~~v~~~~~~~~~~~ 395 (501)
.+++|+ |.... ...+.++..........+.|+|++|+|||+|+..+++ .....+.. +.+ +++ .++
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~y--i~~------~~~ 189 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVY--VTS------EKF 189 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence 345654 54443 2222333322223345799999999999999999998 55554432 334 433 223
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCChH--
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREAY-- 469 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-- 469 (501)
...+...+... .. ..+.+.+. +.-+|+|||++.. ...+.+...+... ...+..+|+||....
T Consensus 190 ~~~~~~~~~~~------~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l-~~~~~~iiits~~~p~~ 257 (450)
T PRK00149 190 TNDFVNALRNN------TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNAL-HEAGKQIVLTSDRPPKE 257 (450)
T ss_pred HHHHHHHHHcC------cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHH-HHCCCcEEEECCCCHHH
Confidence 33344443221 12 22333333 2348999999752 1233444433221 123456788776432
Q ss_pred -------HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 470 -------VARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 470 -------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+...+. .+.++++++++.++-.+++.+++.
T Consensus 258 l~~l~~~l~SRl~-~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 258 LPGLEERLRSRFE-WGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred HHHHHHHHHhHhc-CCeeEEecCCCHHHHHHHHHHHHH
Confidence 122222 456899999999999999988763
No 136
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.97 E-value=5.2e-05 Score=84.67 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||+.++.++...|.... ...+.++|++|+|||++|..++. ++...+ ...+| .+ ++..++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~---~l----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLL---AL----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEE---Ee----eHHHHh
Confidence 559999999999999996533 34566899999999999999887 433221 22233 11 111111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhc-C-CceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGIL-Y-EKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
..... ....+..+..+...+ . +++.+|++|+++... ..+.|.+.+.. ...++|-+
T Consensus 242 -------a~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~----g~i~~Iga 308 (852)
T TIGR03346 242 -------AGAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR----GELHCIGA 308 (852)
T ss_pred -------hcchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc----CceEEEEe
Confidence 01000 011222222222222 2 358999999987531 12233333222 23455555
Q ss_pred eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|....... .+.+....+.++.++.++..+++...
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 55444322 11124457889999999999988754
No 137
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=7e-05 Score=80.19 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=89.1
Q ss_pred ccceeecchhHHHHHHHh---hcC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 322 VTAVVSMENDILKLAKLT---LNS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L---~~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
..++.|.++..+++.+.+ ... ...++-+.++|++|+|||+||+.++. ... ..| +.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~--e~~-----~p~--i~is~s-- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG--EAE-----VPF--FSISGS-- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhC-----CCe--eeccHH--
Confidence 466888877776665554 221 12346799999999999999999988 332 223 333211
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hh----HHHHHHhcCCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GA----WYDLKRIFSPQAS 455 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~----~~~l~~~l~~~~~ 455 (501)
++ ...... .....+...+.......+++|+||+++.. .. +..++..+..+..
T Consensus 251 --~f----~~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 --EF----VEMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HH----HHHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 111110 11223344455555667899999999642 11 2333333322112
Q ss_pred CCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799 456 PIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 456 ~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
..+..||.||.... +...+.+ ....+.++..+.++-.++|..++.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 34556666665543 2222211 346889999999999998887653
No 138
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.97 E-value=6.2e-05 Score=85.56 Aligned_cols=129 Identities=10% Similarity=0.081 Sum_probs=79.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-CCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-LERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~~i~~~ 210 (501)
...++-|.. |.+.|... .+.+++.|+|++|.|||||+..... .++..+|+++... .+...++..++..
T Consensus 13 ~~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHH
Confidence 345566654 44444432 3678999999999999999998773 2336899999644 4667777777777
Q ss_pred hcCCCCc------------Ccch---HHHHHHHHcc--CCeEEEEEecCCCh---hHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 211 VGGSKVE------------KQLD---PQKKLRKLFT--ENRYLVVIINARTP---DIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 211 ~~~~~~~------------~~~~---~~~~l~~~l~--~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
+...... .... ....+...+. +.+++|||||+... ...+.+...++....+..+|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 7421110 0011 1222323332 67899999998542 2223343334444456788899998
Q ss_pred c
Q 010799 271 A 271 (501)
Q Consensus 271 ~ 271 (501)
.
T Consensus 162 ~ 162 (903)
T PRK04841 162 L 162 (903)
T ss_pred C
Confidence 4
No 139
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00011 Score=73.09 Aligned_cols=171 Identities=20% Similarity=0.245 Sum_probs=109.2
Q ss_pred ccceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~ 397 (501)
....+||+.+++.+..++.. ..+..+.+-+.|-+|.|||.+...++.+ ...... ..+. +++..-.....++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~--inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVY--INCTSLTEASAIFK 224 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEE--EeeccccchHHHHH
Confidence 35689999999999999854 3456688999999999999999988873 333332 3356 77777677888888
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCC-c-eEEEEEcCCCChh--hHHHHHH--hcCCCCCCCCCEEEEEeCC----
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYE-K-RYLVVLDDVHSPG--AWYDLKR--IFSPQASPIGSRVILITRE---- 467 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~-r~LlVlDnv~~~~--~~~~l~~--~l~~~~~~~~~~iIiTtR~---- 467 (501)
.|...+.......... .+....+..+... + .+|+|+|+++... ....+.. .+|+ -+++++|+..--
T Consensus 225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~---lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK---LPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc---CCcceeeeeeehhhhh
Confidence 8888873333221222 3344444444433 3 6899999998732 1122222 2333 445665554211
Q ss_pred ---hHHHhh---cCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 468 ---AYVARS---FSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 468 ---~~~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+.+... +.-....+..+|.+.++-.++|..++.
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 111111 111356788999999999999998764
No 140
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.96 E-value=2.9e-05 Score=79.71 Aligned_cols=109 Identities=9% Similarity=0.063 Sum_probs=64.1
Q ss_pred ccccccchhhHHH---HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799 132 KTGILDLNKEVNK---LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL 208 (501)
Q Consensus 132 ~~~~vg~~~~~~~---l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~ 208 (501)
..+++|.+..+.. |.+++... ....+.++|.+|+||||||+.+.+.. ... |+.++.......-++.++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHHHH
Confidence 3568898877655 77777554 34567889999999999999998642 222 333332222111122222
Q ss_pred HHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEE
Q 010799 209 KQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVIL 266 (501)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iiv 266 (501)
+.+.. ....+++.+|+||+++. ....+.|...+.. |+.+++
T Consensus 82 ~~~~~--------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 82 EEARQ--------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred HHHHH--------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 22211 11246788999999975 3445566555542 555554
No 141
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=4.7e-05 Score=71.87 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=95.0
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
.++++|.+....-|.+.+.. ...+....|||+|.|||+-|+.+++..--.+-|++.+-+ .+++...... +..
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~-lnaSderGis-vvr---- 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE-LNASDERGIS-VVR---- 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh-hccccccccc-chh----
Confidence 57799999999999999865 456899999999999999999988743333455543320 2232221111 000
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcC--Cce-EEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILY--EKR-YLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFS 475 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~--~~r-~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~ 475 (501)
. ...+...+......... ..+ -+||||+++. .+.|..+...+.. .+..++-|+.+-.- .+...+.
T Consensus 107 ----~---Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 107 ----E---KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--FSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----h---hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--cccceEEEEEcCChhhCChHHH
Confidence 0 00011111111110110 123 4789999997 6778999888888 67777755554332 2222222
Q ss_pred CCCcceeCCCCChHHHHHHHHHhh
Q 010799 476 PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 476 ~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+.-.-+..++|.+++..+=+...+
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHH
Confidence 233477888898887776665543
No 142
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.95 E-value=1.6e-05 Score=78.30 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=38.5
Q ss_pred cccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+|+|+++.++.|..++... ......+.++|++|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999988742 223556789999999999999999864
No 143
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.94 E-value=0.00074 Score=71.31 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+...-.+...+..++-||++|+--+ ......+...+... ...|..||++|.+......+.
T Consensus 401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviivsHd~~~~~~~~ 463 (501)
T PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVA 463 (501)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHhhC
Confidence 3444455555666788999999654 12222333222221 123678999999987666554
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=9e-05 Score=77.90 Aligned_cols=156 Identities=13% Similarity=0.242 Sum_probs=88.2
Q ss_pred cccee-ecchhHH--HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHH
Q 010799 322 VTAVV-SMENDIL--KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 322 ~~~fv-GR~~~~~--~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~ 396 (501)
+++|+ |-...+. .+.++..........+.|||..|+|||.|+..+++ .....+. .+++ +++ .++.
T Consensus 287 FDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Y--ita------eef~ 356 (617)
T PRK14086 287 FDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRY--VSS------EEFT 356 (617)
T ss_pred HhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEE--eeH------HHHH
Confidence 56676 4444322 22333322222234589999999999999999998 4443332 2344 432 2333
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hh-HHHHHHhcCCCCCCCCCEEEEEeCCh----
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GA-WYDLKRIFSPQASPIGSRVILITREA---- 468 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~-~~~l~~~l~~~~~~~~~~iIiTtR~~---- 468 (501)
.++...+... . ...+++.+.+ .=+|+|||++.. .. .+.|+..+... ...+..|||||...
T Consensus 357 ~el~~al~~~------~----~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l-~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 357 NEFINSIRDG------K----GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTL-HNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHhc------c----HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHH-HhcCCCEEEecCCChHhh
Confidence 3443333221 1 2223333332 347889999752 11 23344433331 23356788888753
Q ss_pred -----HHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 469 -----YVARSFSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 469 -----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
.+...+. .+.++.+++++.+.-.+++++++.
T Consensus 425 ~~l~~rL~SRf~-~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 425 VTLEDRLRNRFE-WGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred hhccHHHHhhhh-cCceEEcCCCCHHHHHHHHHHHHH
Confidence 1223333 678999999999999999998763
No 145
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00013 Score=72.35 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=94.1
Q ss_pred cceee-cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 323 TAVVS-MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 323 ~~fvG-R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
.+++| -+..++.|...+.. +.-++...++|+.|+|||++|..+.+..-..+......+ ........+..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~-~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c---------g~C~~c~~~~~ 74 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAK-NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC---------GTCTNCKRIDS 74 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC---------CcCHHHHHHhc
Confidence 34667 66677777777743 234467899999999999999998763211111110000 00001111110
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799 402 QLTQD-----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y 469 (501)
Q Consensus 402 ~l~~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~ 469 (501)
.-.++ ........+++.+.+... ..+.+-++|+|+++. ....+.|+..+.. .+.++.+|++|.+. .
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE--PSGGTTAILLTENKHQ 152 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC--CCCCceEEEEeCChHh
Confidence 00000 000112233333332221 124456789999876 4557889998888 67788777777653 3
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
+...+.+...++++.+++.++..+.+.+
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4444444677999999999999887764
No 146
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.92 E-value=0.00055 Score=72.09 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
-+...-.+...+..++-+++||+--+ ...+..+...+.. .|..||++|.+......+.
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~----~~~tvi~vsHd~~~~~~~~ 458 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK----KDKGIIIISSEMPELLGIT 458 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH----CCCEEEEECCChHHHHhhC
Confidence 34444555556666778999999644 2222233333333 3678999999877665554
No 147
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=7.1e-05 Score=79.61 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=39.9
Q ss_pred cccceeecchhHHHHHHHhhcCC---CCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSS---DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~---~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++++|-++.++++..++.... ...+++.|+|++|+||||+++.++.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35779999999999999985432 2336799999999999999999987
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00021 Score=76.50 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=95.6
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|.+.....|..++..+. -.+.+.++|+.|+|||++|+.+++........ ... ...+.....+..+.
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~------~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPT------PEPCGKCELCRAIA 85 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCC------CCCCcccHHHHHHh
Confidence 35679999999999999886532 23578899999999999999998743211110 000 01111122222232
Q ss_pred HHhccCC----CCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799 401 RQLTQDE----VDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY 469 (501)
Q Consensus 401 ~~l~~~~----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~ 469 (501)
.....+. .......+.+...+... ..+++-++|||+++. .+.++.|+..+.. ....+.+|++|.+ ..
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe--Pp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE--PPPRVVFVLATTDPQR 163 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc--CCcCeEEEEEeCChhh
Confidence 2211110 00111222222222111 123456889999986 4567888888887 4555655555543 33
Q ss_pred HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 470 VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+...+.+....+++.+++.++....+.+.
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 33333334567888899998887776653
No 149
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.88 E-value=0.0001 Score=62.78 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=46.6
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..+.|+|++|+||||+++.++. ........+++ +.............. ........ ...........+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIY--IDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEE--ECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHH
Confidence 5889999999999999999988 44433323444 443322221111111 11111111 12222333334444444
Q ss_pred Cc-eEEEEEcCCCCh
Q 010799 427 EK-RYLVVLDDVHSP 440 (501)
Q Consensus 427 ~~-r~LlVlDnv~~~ 440 (501)
.. ..+|++|++...
T Consensus 76 ~~~~~viiiDei~~~ 90 (148)
T smart00382 76 KLKPDVLILDEITSL 90 (148)
T ss_pred hcCCCEEEEECCccc
Confidence 43 489999999874
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00016 Score=74.13 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=93.7
Q ss_pred cccceeecchhHHHHHHHhhcC----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLNS----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...++-|.++.+.+|.+++..- -..++-|.++||+|+|||.||+.++++ ..-. | +.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vP-----f--~~isAp- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVP-----F--LSISAP- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCc-----e--Eeecch-
Confidence 5688999999999998887431 134578999999999999999999993 3333 3 444322
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--------hh-----HHHHHHhcCCCC-C-
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--------GA-----WYDLKRIFSPQA-S- 455 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--------~~-----~~~l~~~l~~~~-~- 455 (501)
++..... ..+.+.+...+.+....-+++++||+++-. .+ ...|+..+.... .
T Consensus 258 -------eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 258 -------EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred -------hhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 2222222 334566666666777778999999999861 11 122333222210 1
Q ss_pred CCCCEEEE---EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799 456 PIGSRVIL---ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 456 ~~~~~iIi---TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
..|-.||| |+|-..+...+.. ..+-|.+.-.+...-.+++...
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~ 373 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRII 373 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHH
Confidence 11333444 4554444333332 4567777777776666666544
No 151
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.86 E-value=3.4e-05 Score=65.44 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=52.4
Q ss_pred EEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-
Q 010799 349 ISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE- 427 (501)
Q Consensus 349 v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~- 427 (501)
|.|+|++|+|||++|+.+++ ....+| +. ++.+...+ . ........+.+.+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~--~l~~~~---~~--i~~~~~~~--------------~--~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ--YLGFPF---IE--IDGSELIS--------------S--YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HTTSEE---EE--EETTHHHT--------------S--STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHh--hccccc---cc--cccccccc--------------c--cccccccccccccccccccc
Confidence 57999999999999999999 333222 22 33321100 0 0111223333444443333
Q ss_pred ceEEEEEcCCCCh--hh-----------HHHHHHhcCCCC-CCCCCEEEEEeCC
Q 010799 428 KRYLVVLDDVHSP--GA-----------WYDLKRIFSPQA-SPIGSRVILITRE 467 (501)
Q Consensus 428 ~r~LlVlDnv~~~--~~-----------~~~l~~~l~~~~-~~~~~~iIiTtR~ 467 (501)
++.+|+|||++.. .. ...+...+.... ...+..+|.||..
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 3799999999862 11 345555555420 1134566767765
No 152
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.85 E-value=2.2e-05 Score=77.72 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=59.3
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC--ChHHHHHHHHHHhccCCCCCCCCH------HHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF--DMRSVFADILRQLTQDEVDEESSL------DDLE 418 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 418 (501)
...+|+|++|+||||||+.++++.... +|+..+| +.+.... ++.+++.++...+-.... +.... ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~--VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~i 245 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLI--VLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVI 245 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEE--EEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHH
Confidence 578899999999999999999954333 8999999 8887766 677777777632222211 11111 1222
Q ss_pred HHHHHhc-CCceEEEEEcCCCC
Q 010799 419 SEFTGIL-YEKRYLVVLDDVHS 439 (501)
Q Consensus 419 ~~l~~~l-~~~r~LlVlDnv~~ 439 (501)
..-..+. .++.+||++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 2223322 46899999999864
No 153
>PRK08116 hypothetical protein; Validated
Probab=97.84 E-value=7.8e-05 Score=71.57 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..+.|+|.+|+|||.||..+++ ....+...+++ ++ ..+++..+......... .+..+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~--~~------~~~ll~~i~~~~~~~~~---~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIF--VN------FPQLLNRIKSTYKSSGK---EDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EE------HHHHHHHHHHHHhcccc---ccHHH----HHHHhc
Confidence 4689999999999999999999 44444334455 44 33444455444332211 12222 233333
Q ss_pred CceEEEEEcCCCC--hhhH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 427 EKRYLVVLDDVHS--PGAW--YDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 427 ~~r~LlVlDnv~~--~~~~--~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
+-. ||||||+.. ..+| ..+...+... ...+..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r-~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSR-YRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHH-HHCCCCEEEECCCC
Confidence 333 899999942 2222 3344433331 23466788888753
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00034 Score=69.12 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=81.3
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc-------cCCCCCCCCHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-------QDEVDEESSLDD 416 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~-------~~~~~~~~~~~~ 416 (501)
.-++.+.++|+.|+|||++|..++...-....... ..+.-....+.+...-. ..........++
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~---------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG---------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 34567889999999999999998774322111100 00000011111110000 000001122333
Q ss_pred HHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCCh
Q 010799 417 LESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLHQLRPLNE 488 (501)
Q Consensus 417 ~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~ 488 (501)
+.. +.+.+. +.+-++|||+++. ....+.|+..+-. .+.++.+|+||.+. .+...+.+.-..+.+.+++.
T Consensus 91 iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 91 VRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred HHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 332 223222 2344557799986 5667888888888 66778888888775 34444444556899999999
Q ss_pred HHHHHHHHHh
Q 010799 489 EESGKLFQRR 498 (501)
Q Consensus 489 ~ea~~Lf~~~ 498 (501)
+++.+.+.+.
T Consensus 168 ~~~~~~L~~~ 177 (328)
T PRK05707 168 EESLQWLQQA 177 (328)
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 155
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.82 E-value=0.00057 Score=74.25 Aligned_cols=312 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEE-------EcCCCC--------------------------------
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV-------PVPEEL-------------------------------- 198 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv-------~vs~~~-------------------------------- 198 (501)
+++|+|..|+|||||.+.+. .........+++ .+++..
T Consensus 31 ~v~LvG~NGsGKSTLLriia---G~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (635)
T PRK11147 31 RVCLVGRNGAGKSTLMKILN---GEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHL 107 (635)
T ss_pred EEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred --------------------------CHHHHHHHHHHHhcCCCCcCcchH------HHHHHHHccCCeEEEEEecCCChh
Q 010799 199 --------------------------ERRELVTDILKQVGGSKVEKQLDP------QKKLRKLFTENRYLVVIINARTPD 246 (501)
Q Consensus 199 --------------------------~~~~l~~~i~~~~~~~~~~~~~~~------~~~l~~~l~~kr~LlVlDdv~~~~ 246 (501)
....-...+++.++........++ .-.|...|-.+.=+|+||...+.-
T Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~L 187 (635)
T PRK11147 108 VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHL 187 (635)
T ss_pred hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCcc
Q ss_pred HH---HHHhhcCCCCCCCcEEEEEeccccchh--cccCCCCCCCcc--cCcceeeeccccCC------------------
Q 010799 247 IW---DILKYLFPNSSNGSRVILSFQEADAAR--CRNMSFFGGESS--FKPKYIAYAASEDD------------------ 301 (501)
Q Consensus 247 ~~---~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~~l~~~~~--~~~~~~~~~~s~~~------------------ 301 (501)
+. ..+...+..- +..||++|++...+. |..+-.+..... +.-.+..+......
T Consensus 188 D~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (635)
T PRK11147 188 DIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQ 265 (635)
T ss_pred CHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------------------------CCCCCCCCCCCCCCccccccccceeecchhHHHHHHHhhcCCCC
Q 010799 302 ------------------------------------GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDK 345 (501)
Q Consensus 302 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~~~~ 345 (501)
........+...+.....-+..++.-.-.. ..+.+-+.-.-..
T Consensus 266 ~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~ 344 (635)
T PRK11147 266 EEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKIVFEMENVNYQIDG-KQLVKDFSAQVQR 344 (635)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCceEEEeeeEEEECC-eEEEcCcEEEEcC
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEe---------------------CCCCCh-----HHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYV---------------------SQDFDM-----RSVFAD 398 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~---------------------~~~~~~-----~~~~~~ 398 (501)
-.+++|.|+.|+|||||.+.++. .....-..+.| ..+.+ ...... ..-...
T Consensus 345 Ge~~~l~G~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 422 (635)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLG--QLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG 422 (635)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH
Q ss_pred HHHHhccCCCC------CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 399 ILRQLTQDEVD------EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 399 i~~~l~~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
++..+...... ..+.-+...-.+...+..++-+|+||+--+ ......+...+.. . +..||++|.+..
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~--~~tvi~vSHd~~ 498 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--Y--QGTVLLVSHDRQ 498 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh--C--CCeEEEEECCHH
Q ss_pred HHhhcCCCCcceeC
Q 010799 470 VARSFSPSIFLHQL 483 (501)
Q Consensus 470 ~~~~~~~~~~~~~l 483 (501)
....+. ..++.+
T Consensus 499 ~~~~~~--d~i~~l 510 (635)
T PRK11147 499 FVDNTV--TECWIF 510 (635)
T ss_pred HHHHhc--CEEEEE
No 156
>PRK12377 putative replication protein; Provisional
Probab=97.80 E-value=0.0001 Score=69.64 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
...+.|+|++|+|||.||..+++ ........+.+ +++ .+++..+....... ....+. + +.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~--i~~------~~l~~~l~~~~~~~-----~~~~~~---l-~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIV--VTV------PDVMSRLHESYDNG-----QSGEKF---L-QEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEE--EEH------HHHHHHHHHHHhcc-----chHHHH---H-HHh
Confidence 46899999999999999999999 44444444556 443 23444443333211 111222 2 222
Q ss_pred CCceEEEEEcCCCC----hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 426 YEKRYLVVLDDVHS----PGAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 426 ~~~r~LlVlDnv~~----~~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
.+.-||||||+.. ....+.|...+... ......+||||-
T Consensus 162 -~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R-~~~~~ptiitSN 204 (248)
T PRK12377 162 -CKVDLLVLDEIGIQRETKNEQVVLNQIIDRR-TASMRSVGMLTN 204 (248)
T ss_pred -cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH-HhcCCCEEEEcC
Confidence 3456999999943 12233444444431 233445677765
No 157
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.78 E-value=0.0003 Score=72.99 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=84.8
Q ss_pred ccceeecchhHHHHHHHh---hc-----CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799 322 VTAVVSMENDILKLAKLT---LN-----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR 393 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L---~~-----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~ 393 (501)
..++.|.+...+.+.... .. +-..++-+.++|++|+|||.+|+.+++ ...-.| +- ++++.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~--l~~~~----- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LR--LDVGK----- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EEhHH-----
Confidence 466788776666555421 10 123457899999999999999999988 333222 11 22211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh--------------hHHHHHHhcCCCCCCCCC
Q 010799 394 SVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG--------------AWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~--------------~~~~l~~~l~~~~~~~~~ 459 (501)
+.. ... ..+...+.+.+...-...+++|+||+++... .+..++..+.. ...+.
T Consensus 295 -----l~~----~~v--Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V 361 (489)
T CHL00195 295 -----LFG----GIV--GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPV 361 (489)
T ss_pred -----hcc----ccc--ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCce
Confidence 110 000 1122233333333334568999999997410 11223333333 23344
Q ss_pred EEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
-||.||.+.. +...+ +.....+.++..+.++-.++|..++
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4555665443 22222 1245688999999999999998765
No 158
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00016 Score=72.37 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=86.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
....+.|||+.|.|||.|+..+++ ........... +++.. ......+...+... -.+.+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v--~y~~s----e~f~~~~v~a~~~~----------~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARV--VYLTS----EDFTNDFVKALRDN----------EMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceE--EeccH----HHHHHHHHHHHHhh----------hHHHHHHh
Confidence 457899999999999999999999 66666654333 44432 23333333333321 24556666
Q ss_pred cCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh---------HHHhhcCCCCcceeCCCCChHHH
Q 010799 425 LYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA---------YVARSFSPSIFLHQLRPLNEEES 491 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~---------~~~~~~~~~~~~~~l~~L~~~ea 491 (501)
. .-=++++||++-. ...+++...+... ...|-.||+|++.. .+...+. .+.++++.+++.+..
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l-~~~~kqIvltsdr~P~~l~~~~~rL~SR~~-~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNAL-LENGKQIVLTSDRPPKELNGLEDRLRSRLE-WGLVVEIEPPDDETR 249 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHH-HhcCCEEEEEcCCCchhhccccHHHHHHHh-ceeEEeeCCCCHHHH
Confidence 5 3348889998752 2244555544442 23355899998532 2334444 678999999999999
Q ss_pred HHHHHHhh
Q 010799 492 GKLFQRRL 499 (501)
Q Consensus 492 ~~Lf~~~~ 499 (501)
...+++++
T Consensus 250 ~aiL~kka 257 (408)
T COG0593 250 LAILRKKA 257 (408)
T ss_pred HHHHHHHH
Confidence 99998865
No 159
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.77 E-value=7.4e-05 Score=74.29 Aligned_cols=49 Identities=14% Similarity=-0.046 Sum_probs=39.9
Q ss_pred ccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799 132 KTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 180 (501)
..+|+|+++.++.+..++.. .......+-++|++|+||||||+.+.+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 46799999999999888863 23345677899999999999999998643
No 160
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.77 E-value=0.00027 Score=62.48 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=77.9
Q ss_pred ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccC
Q 010799 327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQD 406 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~ 406 (501)
|-++..+.|...+.. +.-+..+.++|+.|+||+++|..+++..--...... .+........+...-..+
T Consensus 1 gq~~~~~~L~~~~~~-~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----------~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----------PCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------------SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----------CCCCCHHHHHHHhccCcc
Confidence 445667777777744 234467899999999999999998773211111100 000001111111100000
Q ss_pred C----CC---CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HH
Q 010799 407 E----VD---EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VA 471 (501)
Q Consensus 407 ~----~~---~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~ 471 (501)
. .. .....+++. .+.+++. +..-++||||++. .+.++.|+..+-. .+.++.+|++|.+.. +.
T Consensus 70 ~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE--PPENTYFILITNNPSKIL 146 (162)
T ss_dssp EEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS--TTTTEEEEEEES-GGGS-
T ss_pred eEEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC--CCCCEEEEEEECChHHCh
Confidence 0 00 011233333 4444443 2466899999986 5778889998888 778899888888764 44
Q ss_pred hhcCCCCcceeCCCCC
Q 010799 472 RSFSPSIFLHQLRPLN 487 (501)
Q Consensus 472 ~~~~~~~~~~~l~~L~ 487 (501)
..+.+.-..+.+++||
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 4444455677777664
No 161
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.76 E-value=0.0011 Score=67.43 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=73.2
Q ss_pred eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-----cc----CCc---cceeEEEEe-------
Q 010799 326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-----KK----NFP---CRAWANVYV------- 386 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-----~~----~f~---~~~w~~v~~------- 386 (501)
+|-++.. .+..-|..+-+.-..|+++|+.|+|||||.+.++.+..- +. +|. ...-+....
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 3444444 333333333233368999999999999999888775321 11 111 000000000
Q ss_pred ----CCCCChHHHHHHHHHHhccCCCCCC------CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCC
Q 010799 387 ----SQDFDMRSVFADILRQLTQDEVDEE------SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQ 453 (501)
Q Consensus 387 ----~~~~~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~ 453 (501)
-.+....+..+.++..++.....+. ++-+...=.+....-..+.||+||+--+ .+..+.+..++..
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe- 554 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE- 554 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc-
Confidence 0111234455666666666544322 2223333334444446788999999765 3556667777776
Q ss_pred CCCCCCEEEEEeCChH
Q 010799 454 ASPIGSRVILITREAY 469 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~ 469 (501)
-+|+ +|++|.+-.
T Consensus 555 --~~Gg-vv~vSHDfr 567 (614)
T KOG0927|consen 555 --FPGG-VVLVSHDFR 567 (614)
T ss_pred --cCCc-eeeeechhh
Confidence 3444 566665543
No 162
>PRK08181 transposase; Validated
Probab=97.75 E-value=0.00014 Score=69.52 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=55.5
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..+.|+|++|+|||.||..+++ ........+.| ++ ..+++..+..... ..+.......+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f--~~------~~~L~~~l~~a~~------~~~~~~~l~~l~---- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLF--TR------TTDLVQKLQVARR------ELQLESAIAKLD---- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceee--ee------HHHHHHHHHHHHh------CCcHHHHHHHHh----
Confidence 5699999999999999999988 44444344455 43 2344444433221 112222222221
Q ss_pred CceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 427 EKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 427 ~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
+.-||||||+... .....+...+.. .-.+..+||||...
T Consensus 167 -~~dLLIIDDlg~~~~~~~~~~~Lf~lin~--R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 -KFDLLILDDLAYVTKDQAETSVLFELISA--RYERRSILITANQP 209 (269)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHH--HHhCCCEEEEcCCC
Confidence 2349999999642 222344444443 22234688887653
No 163
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0002 Score=76.54 Aligned_cols=133 Identities=8% Similarity=-0.042 Sum_probs=71.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
..+++|.+..++.|.+++..+.- .+.+-++|..|+||||+|+.+.+.-.-...++ +..|..-...+.|...-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL-~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL-HHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 46799999999999999976532 34456999999999999987764221111110 01111111111111100
Q ss_pred c-----CCC--CcCcchHHHHHHHH----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 212 G-----GSK--VEKQLDPQKKLRKL----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 212 ~-----~~~--~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
. .+. ....+++.+.+... ..++.-++|||++.. ...|+.|+..+..-....++|+||.+.+
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 0 000 00001111111111 124555888999964 4558877777665556788887776543
No 164
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=4.6e-05 Score=75.79 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=60.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCCH-----HHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESSL-----DDLES 419 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~ 419 (501)
..++|+|++|+|||||++.+++.... ++|+..+| +.+... .++.++++.++..+-.......... ....+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~--VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELI--VLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEE--EEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 58999999999999999999984322 36888889 888655 6888888888544333322111111 11222
Q ss_pred HHHHhc-CCceEEEEEcCCCC
Q 010799 420 EFTGIL-YEKRYLVVLDDVHS 439 (501)
Q Consensus 420 ~l~~~l-~~~r~LlVlDnv~~ 439 (501)
...++. .+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 222222 46899999999875
No 165
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.71 E-value=8.5e-05 Score=71.54 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=70.9
Q ss_pred cccccchhhHHH--HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799 133 TGILDLNKEVNK--LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 133 ~~~vg~~~~~~~--l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
.+.||.+.-+.+ ++.-+.+. ..+.-+-.||.+|+||||||+.+.+..+-.. ..||..|-...-..=++.|+++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq-~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ-NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc-CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 445555544332 22222222 2577778999999999999999997655433 4566666543333333444443
Q ss_pred hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEE--Eeccccc
Q 010799 211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVIL--SFQEADA 273 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iiv--Ttr~~~v 273 (501)
... ...+.++|-.|.+|.|.. ..+- -..+|.-.+|+-++| ||.|.+.
T Consensus 213 aq~-------------~~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 213 AQN-------------EKSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSF 263 (554)
T ss_pred HHH-------------HHhhhcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCcc
Confidence 221 123457888999999852 2222 244666677886664 6766653
No 166
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.71 E-value=0.00028 Score=66.08 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=72.5
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVFADILRQLTQDE 407 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~ 407 (501)
.|.++|..+=..-.++.|+|++|+|||+||..++. ...... ..++| +.....++...+ .++........
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~y--i~~e~~~~~~rl-~~~~~~~~~~~ 81 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVY--IDTEGAFRPERL-VQLAVRFGLDP 81 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEE--EecCCCCCHHHH-HHHHHHhccch
Confidence 34444533334557999999999999999999876 322222 45677 777665554443 33333322110
Q ss_pred C--------CCCCCHHHHHHHHHHhcC---C-ceEEEEEcCCCCh---------------hhHHHHHHhcCCCCCCCCCE
Q 010799 408 V--------DEESSLDDLESEFTGILY---E-KRYLVVLDDVHSP---------------GAWYDLKRIFSPQASPIGSR 460 (501)
Q Consensus 408 ~--------~~~~~~~~~~~~l~~~l~---~-~r~LlVlDnv~~~---------------~~~~~l~~~l~~~~~~~~~~ 460 (501)
. ....+.+++...+.+... . +.-|+|+|.+... ..+..+...|.......++.
T Consensus 82 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~ 161 (226)
T cd01393 82 EEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVA 161 (226)
T ss_pred hhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence 0 023455666666665543 3 4569999998541 11222222233211246888
Q ss_pred EEEEeCC
Q 010799 461 VILITRE 467 (501)
Q Consensus 461 iIiTtR~ 467 (501)
||+|+..
T Consensus 162 vi~tnq~ 168 (226)
T cd01393 162 VVFTNQV 168 (226)
T ss_pred EEEEEEE
Confidence 9998753
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.00031 Score=77.78 Aligned_cols=160 Identities=14% Similarity=0.157 Sum_probs=86.5
Q ss_pred cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.+++|.++..+++.+++. .+..+.+++.++|++|+|||++|+.+++ .....|-. ++++...+..++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~-----i~~~~~~~~~~i--- 389 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVR-----FSLGGVRDEAEI--- 389 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEE-----EeCCCcccHHHH---
Confidence 458899999999887663 2223446899999999999999999998 44444422 333332232221
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcC--------C-C---CCC-CCC
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFS--------P-Q---ASP-IGS 459 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~--------~-~---~~~-~~~ 459 (501)
... .... .......+.+.+..... +.-+|+||+++... ....|+..+. + + ... .+.
T Consensus 390 -~g~-~~~~--~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 390 -RGH-RRTY--VGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred -cCC-CCce--eCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 110 0000 11122333444444333 33478899987631 1233333221 1 0 000 123
Q ss_pred EEEEEeCChH--HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 460 RVILITREAY--VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 460 ~iIiTtR~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
++|+|.|.. +...+-+...++++++++.++-.+++.+.
T Consensus 465 -~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 465 -IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred -EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 334444432 22222224468999999999988887654
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.00013 Score=73.74 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+.++.++.++.+...|.. .+.+.++|++|+|||++|+.+++.......|..+.| +.+....+..+.+..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~--VtFHpsySYeDFI~G~r- 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNM--VQFHQSYSYEDFIQGYR- 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeE--EeecccccHHHHhcccC-
Confidence 35678889999999998853 257888999999999999999885433446677778 88877776665543221
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHS 439 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~ 439 (501)
...........-..+.+..... +++++||+|+++.
T Consensus 247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 1110000000011222222222 3679999999976
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00053 Score=68.01 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=85.6
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-------------------ccceeEEEE
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-------------------PCRAWANVY 385 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-------------------~~~~w~~v~ 385 (501)
++|-+....++..+.......++.+.++|++|+|||++|..++++.--.... ..+.. ++
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le--l~ 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE--LN 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE--ec
Confidence 6777888888888886544444569999999999999999988743111110 11111 22
Q ss_pred eCCCCC---hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCE
Q 010799 386 VSQDFD---MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSR 460 (501)
Q Consensus 386 ~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~ 460 (501)
.+.... ..+..+++......... .+..-++++|+++. .+..+.+...+.. ....+.
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe--p~~~~~ 141 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE--PPKNTR 141 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc--CCCCeE
Confidence 222222 12222222222221110 24567899999987 4556788888877 677888
Q ss_pred EEEEeCCh-HHHhhcCCCCcceeCCCCChHH
Q 010799 461 VILITREA-YVARSFSPSIFLHQLRPLNEEE 490 (501)
Q Consensus 461 iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~e 490 (501)
+|++|.+. .+...+.+.-..+++.+.+..+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 88888743 3444343345577776644433
No 170
>PRK06526 transposase; Provisional
Probab=97.69 E-value=9.8e-05 Score=70.17 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=52.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
...+.|+|++|+|||+||..+.. .....-..+.| + +..+++..+...... .. ....+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f--~------t~~~l~~~l~~~~~~------~~---~~~~l~~l- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLF--A------TAAQWVARLAAAHHA------GR---LQAELVKL- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhh--h------hHHHHHHHHHHHHhc------Cc---HHHHHHHh-
Confidence 35799999999999999999887 33322223344 2 223344444322111 11 12233332
Q ss_pred CCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 426 YEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
.+.-||||||+... ...+.+...+... ...+ .+|+||...
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r-~~~~-s~IitSn~~ 201 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEAANLFFQLVSSR-YERA-SLIVTSNKP 201 (254)
T ss_pred -ccCCEEEEcccccCCCCHHHHHHHHHHHHHH-HhcC-CEEEEcCCC
Confidence 23458999999752 2222344433321 1223 478887653
No 171
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00023 Score=74.32 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
++=+|.++..+++.++|. .++.+-.+++++||+|||||.+|+.++. .....|.. ++++.-.+..++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR-----fSvGG~tDvAeIk-- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR-----FSVGGMTDVAEIK-- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE-----EeccccccHHhhc--
Confidence 456899999999999883 3445568999999999999999999999 66666644 6666666655431
Q ss_pred HHHHhccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------------hhHHHHHHhcCCCCCCCCC
Q 010799 399 ILRQLTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSP------------------GAWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 399 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------------~~~~~l~~~l~~~~~~~~~ 459 (501)
+...- -..-+..+++.++..-. ..-|+.||+++.. ++-..|.+.+.+. .-.=|
T Consensus 482 ------GHRRTYVGAMPGkiIq~LK~v~t-~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdV-p~DLS 553 (906)
T KOG2004|consen 482 ------GHRRTYVGAMPGKIIQCLKKVKT-ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDV-PVDLS 553 (906)
T ss_pred ------ccceeeeccCChHHHHHHHhhCC-CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccc-ccchh
Confidence 11100 01123345555555433 3457778888751 1112233333331 11235
Q ss_pred EEEEEeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799 460 RVILITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 460 ~iIiTtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+|++...-..+..-.++ ...+|+|.+...+|-.++-.++
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~y 595 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERY 595 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHh
Confidence 66664332222211111 4568999999988877665544
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.68 E-value=0.00049 Score=71.94 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=29.8
Q ss_pred ecchhHHHHHHHhhcC------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 327 SMENDILKLAKLTLNS------SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~------~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
|-++-++.+.+.+... ......|+|.|.+|+|||+|...+...
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 4445555555544221 123578999999999999999998874
No 173
>PRK04195 replication factor C large subunit; Provisional
Probab=97.68 E-value=0.00018 Score=75.43 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=69.7
Q ss_pred ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILK 209 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~ 209 (501)
..+++|.++.++.|.+|+..- +...+.+-|+|++|+||||+|+.+.+... |+.. -+..+...+. ..+..++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~i-elnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVI-ELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEE-EEcccccccH-HHHHHHHH
Confidence 467999999999999999742 22267889999999999999999986432 2222 2233332222 22333332
Q ss_pred HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCCh------hHHHHHhhcCCCCCCCcEEEEEec
Q 010799 210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTP------DIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
...... .....++-+||||++... ..+..+...+.. .++.||+|+.
T Consensus 87 ~~~~~~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n 138 (482)
T PRK04195 87 EAATSG------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN 138 (482)
T ss_pred HhhccC------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence 221110 001136779999998753 224555544432 2345666664
No 174
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.67 E-value=2.3e-05 Score=77.05 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=101.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCc-cceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFP-CRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~-~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
..+.++++|+||||||+++..+.. +...|. .+.+ +.+....+...+.-.....+..... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~--vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAF--VDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhhhcccceee--eeccccCchhHhHHHHHhhcccccc----cchHHHHHHHH
Confidence 348999999999999999998766 455564 4556 7777777777777777776666543 23445678888
Q ss_pred hcCCceEEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCCCCChH-HHHHHHHHhh
Q 010799 424 ILYEKRYLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEE-ESGKLFQRRL 499 (501)
Q Consensus 424 ~l~~~r~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~ 499 (501)
.+.+++.++++||+.+. +....+...+.. +.+.-+|+.|+|+..... ......+++|+.. ++.++|..++
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~--~~~~~~~~atsre~~l~~----ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLG--ACPRLAILATSREAILVA----GEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHc--cchhhhhHHHhHhhhccc----ccccccCCccccCCchhHHHHHHH
Confidence 88999999999999874 333334444555 566678899999765332 4667888888876 7888887665
No 175
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00028 Score=70.62 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=79.6
Q ss_pred cccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-e-eEEEEcCCCCCHHHHHHHHH
Q 010799 133 TGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-C-RAWVPVPEELERRELVTDIL 208 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~-~~wv~vs~~~~~~~l~~~i~ 208 (501)
..+.+|+.+.+++...|..- +....-+-|+|.+|+|||+.++.+.. ++++... . .+.|..-.......++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 44889999999999988742 22223388899999999999999995 3433321 1 56666667778899999999
Q ss_pred HHhcCCCC--cCcchHHHHHHHHcc--CCeEEEEEecCCC
Q 010799 209 KQVGGSKV--EKQLDPQKKLRKLFT--ENRYLVVIINART 244 (501)
Q Consensus 209 ~~~~~~~~--~~~~~~~~~l~~~l~--~kr~LlVlDdv~~ 244 (501)
++++.... ....+....+.+.+. ++.+++|||++..
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 99973322 233455677777774 4788999999864
No 176
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.67 E-value=0.00017 Score=76.05 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 177
>PRK06893 DNA replication initiation factor; Validated
Probab=97.65 E-value=0.00014 Score=68.24 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=53.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
.+.+-++|.+|+|||+|++.+.+.. ........++.+... ..... .+.+.++ +.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~-------------------~~~~~~~-~~d 93 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP-------------------AVLENLE-QQD 93 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH-------------------HHHhhcc-cCC
Confidence 3568899999999999999999642 222234456655311 00001 1111222 224
Q ss_pred EEEEecCCC---hhHHHH-HhhcCCCC-CCCcEEEEEeccccch
Q 010799 236 LVVIINART---PDIWDI-LKYLFPNS-SNGSRVILSFQEADAA 274 (501)
Q Consensus 236 LlVlDdv~~---~~~~~~-l~~~~~~~-~~gs~iivTtr~~~va 274 (501)
+|+|||+|. ...|+. +...+... ..|+.+||+|.+....
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 899999986 345653 33333222 2466777777666544
No 178
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00047 Score=72.34 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred ceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 324 AVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
+=+|.++..+++.+.|. ...-+-++++++||||+|||.|++.++. .....|-. ++++...+..++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR-----~sLGGvrDEAEI---- 392 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR-----ISLGGVRDEAEI---- 392 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE-----EecCccccHHHh----
Confidence 45789999999998883 2233447999999999999999999999 66777733 444544443332
Q ss_pred HHHhccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhc------------CCCCCCCCCE
Q 010799 400 LRQLTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIF------------SPQASPIGSR 460 (501)
Q Consensus 400 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l------------~~~~~~~~~~ 460 (501)
.+...- -..-+..+++.++..- .+.-|++||+++.. +-..+++..| ...+..- |.
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~ 466 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKAG-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SK 466 (782)
T ss_pred ----ccccccccccCChHHHHHHHHhC-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hh
Confidence 111110 0112234455555442 34568889998751 1112222222 1111111 33
Q ss_pred E-EEEeCChH--HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 461 V-ILITREAY--VARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 461 i-IiTtR~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
| .|||-|.. +...+--...++++.+.+.+|-.+.-.++
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~ 507 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRH 507 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHh
Confidence 4 44554432 22211115679999999999988776654
No 179
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.63 E-value=0.00038 Score=76.56 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=90.6
Q ss_pred cceeecchhHHHHHHHhhc----CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLN----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.+.+|.++..+++.+++.. ......+++++|++|+|||++|+.++. .....|.. ++++...+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~-----i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR-----MALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE-----EEcCCCCCHHHhccc
Confidence 5689999999999887742 123446899999999999999999987 44444422 333333332221111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcCC------------CCCC-CCC
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFSP------------QASP-IGS 459 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~~------------~~~~-~~~ 459 (501)
- ....+ .....+.+.+...-. ...+|+||+++... ....|+..+.. .+.. .+.
T Consensus 395 ~-~~~~g------~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 R-RTYIG------SMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred h-hccCC------CCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 0 01111 111233444443322 33478899997521 13455554432 0001 233
Q ss_pred EEEEEeCChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+|.|+....+...+-....++++.+++.++-.++..+++
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3444554433333322255689999999999988877654
No 180
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00059 Score=68.75 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=38.0
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999887642 235678999999999999998874
No 181
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.61 E-value=0.00015 Score=68.52 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=58.6
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD- 409 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~- 409 (501)
|.++|..+=..-.++.|+|++|+|||+|+.+++........ -..++| ++....++..++ .+++.........
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viy--i~~e~~~~~~rl-~~~~~~~~~~~~~~ 84 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVY--IDTEGTFRPERL-VQIAERFGLDPEEV 84 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEE--EeCCCCcCHHHH-HHHHHHhccChHhH
Confidence 33444333345579999999999999999998753222221 256788 887665554433 3333332221110
Q ss_pred -------CCCCHH---HHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799 410 -------EESSLD---DLESEFTGILYE--KRYLVVLDDVHS 439 (501)
Q Consensus 410 -------~~~~~~---~~~~~l~~~l~~--~r~LlVlDnv~~ 439 (501)
...+.. .....+.+.+.. +.-|||+|.+..
T Consensus 85 ~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 85 LDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred hcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 112223 333445555543 567999999864
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.60 E-value=0.00037 Score=65.62 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCC
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEE 411 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 411 (501)
+..+.++...-..+...+.++|.+|+|||+||..+++ .....-..+++ ++ +.+++..+....... .
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~--it------~~~l~~~l~~~~~~~----~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLI--IT------VADIMSAMKDTFSNS----E 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EE------HHHHHHHHHHHHhhc----c
Confidence 4444444432223345889999999999999999998 44433334455 43 344444444333211 1
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHH--HHHHhcCCCCCCCCCEEEEEeCC
Q 010799 412 SSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWY--DLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~--~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
.+...+.+ .+. +.=||||||+.. ..+|. .+...+... ......+||||-.
T Consensus 151 ~~~~~~l~----~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R-y~~~~~tiitSNl 204 (244)
T PRK07952 151 TSEEQLLN----DLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRR-SSSKRPTGMLTNS 204 (244)
T ss_pred ccHHHHHH----Hhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHH-HhCCCCEEEeCCC
Confidence 12222332 233 334888999865 23333 233333321 2334556777653
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00061 Score=63.95 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=38.6
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC 378 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~ 378 (501)
..+.+|......+..++.+ ...+.+.|++|+|||+||..++.+.-....|..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 3466788888999888854 249999999999999999998764222344544
No 184
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00025 Score=74.07 Aligned_cols=132 Identities=9% Similarity=-0.019 Sum_probs=73.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH---HH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD---IL 208 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~---i~ 208 (501)
-.+++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+.+.-...+.+...+|.|.+-. .+... .+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~----~i~~~~h~dv 87 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL----AVRRGAHPDV 87 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH----HHhcCCCCce
Confidence 3578999999999998887653 2345689999999999999998764332233333344433210 00000 00
Q ss_pred HHhcCCCCcCcchHHHHHHHH-----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799 209 KQVGGSKVEKQLDPQKKLRKL-----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
..++... ....+....+.+. ..+++-++|||+++. ...++.|...+......+.+|++|.
T Consensus 88 ~el~~~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 88 LEIDAAS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred EEecccc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 0000000 0001111222222 234666899999874 4557777777765545555555554
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.59 E-value=7.8e-05 Score=66.96 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=41.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
..-+.|+|++|+|||.||..+++ ....+-..+.| ++. .+++..+ ..... .....+..+.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f--~~~------~~L~~~l----~~~~~--~~~~~~~~~~l~~-- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLF--ITA------SDLLDEL----KQSRS--DGSYEELLKRLKR-- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEE--EEH------HHHHHHH----HCCHC--CTTHCHHHHHHHT--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeE--eec------Cceeccc----ccccc--ccchhhhcCcccc--
Confidence 46799999999999999999988 33333334455 442 3344443 32221 1122333333322
Q ss_pred CCceEEEEEcCCCC
Q 010799 426 YEKRYLVVLDDVHS 439 (501)
Q Consensus 426 ~~~r~LlVlDnv~~ 439 (501)
.=||||||+..
T Consensus 109 ---~dlLilDDlG~ 119 (178)
T PF01695_consen 109 ---VDLLILDDLGY 119 (178)
T ss_dssp ---SSCEEEETCTS
T ss_pred ---ccEecccccce
Confidence 24888999865
No 186
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.57 E-value=0.0003 Score=70.21 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|++..++.|.+++..+ ..+.+-++|.+|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999988754 334577999999999999999875
No 187
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.57 E-value=0.0013 Score=68.74 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=108.7
Q ss_pred ceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHccccc---ccCCccceeEEEEeCCCCChHHHHH
Q 010799 324 AVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYT---KKNFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~---~~~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
.+-+|+.+..+|.+++.. .....+++-|.|.+|+|||+.+..+....+. +.......+-.++.-.-..+.+++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 356899999999888743 2233459999999999999999999884431 1122222221145555667889999
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCChhh--HHHHHHhcCCCCCCCCCEEEEEeCC---
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHSPGA--WYDLKRIFSPQASPIGSRVILITRE--- 467 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~~~~--~~~l~~~l~~~~~~~~~~iIiTtR~--- 467 (501)
.|...+.+... ........+..+.. .+.+++++|+++..-. .+-+...+.|- ..++++++|.+=.
T Consensus 477 ~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-t~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 477 KIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-TLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC-cCCCCceEEEEecccc
Confidence 99999988765 33444455555554 2468999999886422 56666677763 6778887775421
Q ss_pred ----hHHHhhcCC--CCcceeCCCCChHHHHHHHHHh
Q 010799 468 ----AYVARSFSP--SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 468 ----~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.+....++ ....+..+|.+.++-.+....+
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~R 588 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISAR 588 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHh
Confidence 112212221 3556777888777666655544
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.56 E-value=0.00049 Score=70.33 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=37.2
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..|+||++.++.+...+..+ ..|.|.|++|+|||+||+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence 56999999999999888654 4789999999999999999887
No 189
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.56 E-value=0.00027 Score=76.76 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=34.6
Q ss_pred ccccccchhhHH---HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVN---KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~---~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+. .|.+.+..+ +...+-++|++|+||||||+.+++.
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 357889888774 455555543 4556789999999999999999963
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.55 E-value=0.00053 Score=75.69 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=86.0
Q ss_pred cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
..+++.|.+..++++.+++... -...+.+.|+|++|+|||+||+.+++ .....| +. ++...
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~---i~--i~~~~- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF---IS--INGPE- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE---EE--EecHH-
Confidence 3467899999999998876321 12346799999999999999999988 333322 11 22211
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASP 456 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~ 456 (501)
+..... ....+.+...+.....+.+.+|+||+++.. .....|...+... ..
T Consensus 248 ---------i~~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l-~~ 311 (733)
T TIGR01243 248 ---------IMSKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-KG 311 (733)
T ss_pred ---------Hhcccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc-cc
Confidence 110000 111223334444444556789999998652 1123344444331 12
Q ss_pred CCCEEEE-EeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799 457 IGSRVIL-ITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 457 ~~~~iIi-TtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.+..++| ||.... +...+.. ....+.++.++.++-.+++..+
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 2333444 443322 2222211 2356788888888888877643
No 191
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.0015 Score=72.90 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++||+.++.++++.|..... .-+.++|.+|+|||+||+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987542 3345899999999999988874
No 192
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.53 E-value=0.00065 Score=61.94 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=62.7
Q ss_pred ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CC-------------
Q 010799 327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FD------------- 391 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~------------- 391 (501)
.+..+.....+.|. ...++.+.|++|+|||.||...+.+.-....|+..++ +.-.-+ .+
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii--~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIII--TRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE--EE-S--TT----SS---------
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEE--EecCCCCccccccCCCCHHHHHH
Confidence 45566777777775 3359999999999999999988765444577777666 432110 11
Q ss_pred -hHHHHHHHHHHhccCCCCCCCCHHHHHHH------HHHhcCCc---eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEE
Q 010799 392 -MRSVFADILRQLTQDEVDEESSLDDLESE------FTGILYEK---RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRV 461 (501)
Q Consensus 392 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~i 461 (501)
...-+.+.+..+... ...+.+.+. --.+++++ ..+||+|++++... .++...+.. .+.+|++
T Consensus 78 p~~~p~~d~l~~~~~~-----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~-~~~k~ilTR--~g~~ski 149 (205)
T PF02562_consen 78 PYLRPIYDALEELFGK-----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP-EELKMILTR--IGEGSKI 149 (205)
T ss_dssp TTTHHHHHHHTTTS-T-----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H-HHHHHHHTT--B-TT-EE
T ss_pred HHHHHHHHHHHHHhCh-----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH-HHHHHHHcc--cCCCcEE
Confidence 011111222222111 111221110 01334454 46999999998432 334444555 6779999
Q ss_pred EEEeCChH
Q 010799 462 ILITREAY 469 (501)
Q Consensus 462 IiTtR~~~ 469 (501)
|++--...
T Consensus 150 i~~GD~~Q 157 (205)
T PF02562_consen 150 IITGDPSQ 157 (205)
T ss_dssp EEEE----
T ss_pred EEecCcee
Confidence 99965443
No 193
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.53 E-value=0.00051 Score=72.34 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 5999999999999999999876
No 194
>PRK08118 topology modulation protein; Reviewed
Probab=97.52 E-value=3.5e-05 Score=68.51 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=28.6
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccc-cccceeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAW 191 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~w 191 (501)
+-|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999766554 45777775
No 195
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.52 E-value=0.0012 Score=63.29 Aligned_cols=155 Identities=12% Similarity=0.167 Sum_probs=77.9
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH----------
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL---------- 400 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~---------- 400 (501)
-++++..++.. .+.+.|+|++|+|||+||+.++. .....| .. +++....+..+++....
T Consensus 10 l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~--~lg~~~---~~--i~~~~~~~~~dllg~~~~~~~~~~~~~ 78 (262)
T TIGR02640 10 VTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVAR--KRDRPV---ML--INGDAELTTSDLVGSYAGYTRKKVHDQ 78 (262)
T ss_pred HHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHH--HhCCCE---EE--EeCCccCCHHHHhhhhcccchhhHHHH
Confidence 34444444432 24677999999999999999887 333322 33 55555444444432211
Q ss_pred --HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC--------------CCCCCEEE
Q 010799 401 --RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA--------------SPIGSRVI 462 (501)
Q Consensus 401 --~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~--------------~~~~~~iI 462 (501)
.............. .-..+.... .+...+++|+++. .+.+..|...+.... ..++.+||
T Consensus 79 ~~~~~~~~~~~~~~~~--~~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI 155 (262)
T TIGR02640 79 FIHNVVKLEDIVRQNW--VDNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI 155 (262)
T ss_pred HHHHhhhhhcccceee--cCchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence 00000000000000 000111111 1346888999986 445555555443200 12366888
Q ss_pred EEeCChHHH------hhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 463 LITREAYVA------RSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 463 iTtR~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+|+-..... .........+.++.++.++-.+++.++.
T Consensus 156 aTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 156 FTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred EeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 887643211 1111133467788888888888877653
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.0011 Score=70.09 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|+.|+|||||.+.++.
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999875
No 197
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.50 E-value=0.00048 Score=67.09 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=80.8
Q ss_pred ccccccchhhHHHHHHHHhcCCCC-eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSS-LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
++.+.+|+.....|..+|...+.. ...|-|.|-.|.|||.+.+++++... ...+|++.-+.|...-++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence 457889999999999999876543 34457899999999999999997652 245899999999999999999999
Q ss_pred hcCCCCc-C--cc------hHHHHHHH--Hcc--CCeEEEEEecCCChhH
Q 010799 211 VGGSKVE-K--QL------DPQKKLRK--LFT--ENRYLVVIINARTPDI 247 (501)
Q Consensus 211 ~~~~~~~-~--~~------~~~~~l~~--~l~--~kr~LlVlDdv~~~~~ 247 (501)
.+..... . .. +....+.+ ... ++.++||||++....+
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 9622221 1 11 12233333 122 4689999999875443
No 198
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0013 Score=66.86 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=82.5
Q ss_pred cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccC
Q 010799 328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQD 406 (501)
Q Consensus 328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~ 406 (501)
|..-+.++.+.+.. ...++.|.|+-++||||+++.+.. ...+. .++ ++..+.. +-..+ .+.
T Consensus 22 ~~~~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy--~~~~d~~~~~~~l-~d~------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIK--GLLEE---IIY--INFDDLRLDRIEL-LDL------- 83 (398)
T ss_pred HHhhhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHh--hCCcc---eEE--EEecchhcchhhH-HHH-------
Confidence 33444555554422 222999999999999999976665 33333 333 3321111 11111 111
Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH-----HhhcCCCCcce
Q 010799 407 EVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV-----ARSFSPSIFLH 481 (501)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~-----~~~~~~~~~~~ 481 (501)
...+...-..++..|+||.|+....|......+.+ ..+. ++++|+-+... +....+....+
T Consensus 84 -----------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d--~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~ 149 (398)
T COG1373 84 -----------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYD--RGNL-DVLITGSSSSLLSKEISESLAGRGKDL 149 (398)
T ss_pred -----------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHc--cccc-eEEEECCchhhhccchhhhcCCCceeE
Confidence 11111111126789999999999999999999998 5555 88888776543 33333366789
Q ss_pred eCCCCChHHHHH
Q 010799 482 QLRPLNEEESGK 493 (501)
Q Consensus 482 ~l~~L~~~ea~~ 493 (501)
++-|||..|-..
T Consensus 150 ~l~PlSF~Efl~ 161 (398)
T COG1373 150 ELYPLSFREFLK 161 (398)
T ss_pred EECCCCHHHHHh
Confidence 999999998765
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.49 E-value=0.00041 Score=64.69 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=28.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW 381 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w 381 (501)
-.++|.|.+|+|||+|+..+.. .....|..+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l 46 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFL 46 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEE
Confidence 4788999999999999999988 67788866655
No 200
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0008 Score=71.17 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=71.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
-.+++|.+.....|.+++..+. -.+.+-++|..|+||||+|+.+.+.-. |.-++.. ..|+.-...+.|...-
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTS-TPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCC-CCCccCHHHHHHhcCC
Confidence 4679999999999999998653 235778899999999999998864211 1111111 1111111111111100
Q ss_pred cCC-------CCcCcchHHHHHHHH-----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 212 GGS-------KVEKQLDPQKKLRKL-----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 212 ~~~-------~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
..+ ......+. ..+... ..+++-++|+|++.. ...++.|...+.....+.++|++|.+
T Consensus 86 hpDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 000 00000111 111111 235666889999864 45677777766655566778877755
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.00029 Score=67.35 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+.|+|++|+|||+||..+++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 5788999999999999999977
No 202
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00079 Score=64.13 Aligned_cols=140 Identities=17% Similarity=0.246 Sum_probs=77.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHccccc--ccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYT--KKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFT 422 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~--~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 422 (501)
..|+|.++||||.|||+|++.++.+..+ .+.|....- +-+.. -.++... +... ......+++.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~l--iEins----hsLFSKW---FsES----gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQL--IEINS----HSLFSKW---FSES----GKLVAKMFQKIQ 242 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceE--EEEeh----hHHHHHH---Hhhh----hhHHHHHHHHHH
Confidence 3489999999999999999999986543 344432222 22211 1111111 1111 224566778888
Q ss_pred HhcCCceEE--EEEcCCCCh-----------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH--HHhhc-CCCCcc
Q 010799 423 GILYEKRYL--VVLDDVHSP-----------------GAWYDLKRIFSPQASPIGSRVILITREAY--VARSF-SPSIFL 480 (501)
Q Consensus 423 ~~l~~~r~L--lVlDnv~~~-----------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~--~~~~~-~~~~~~ 480 (501)
+.+.++..| +.+|+|++. ...+.++-.+... ....--+|+||.+-. +...+ .+..-+
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-K~~~NvliL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-KRYPNVLILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-ccCCCEEEEeccchHHHHHHHhhhHhhhe
Confidence 888876543 458998762 1133344433331 111223555665532 11111 113457
Q ss_pred eeCCCCChHHHHHHHHHh
Q 010799 481 HQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 481 ~~l~~L~~~ea~~Lf~~~ 498 (501)
.-+++.+.+.-++++.-.
T Consensus 322 ~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSC 339 (423)
T ss_pred eecCCccHHHHHHHHHHH
Confidence 778888888888777654
No 203
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.47 E-value=0.0016 Score=72.88 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=90.2
Q ss_pred cceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
..++|.+..++.+...+... ..+ ...+.+.|++|+|||++|+.+.. .....-...+. ++++.-.+ ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~--~d~s~~~~-~~- 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVR--IDMSEYME-KH- 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEE--Eechhhcc-cc-
Confidence 46899999999999888542 112 35788999999999999999887 33222122222 34332111 11
Q ss_pred HHHHHHHhccCCCC-CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEE
Q 010799 396 FADILRQLTQDEVD-EESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVI 462 (501)
Q Consensus 396 ~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iI 462 (501)
....+.+..+. ..... ...+.+.+..+ ..+|+||+++. ...++.|+..+.... ...++.||
T Consensus 639 ---~~~~l~g~~~g~~g~~~---~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 639 ---SVARLIGAPPGYVGYEE---GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred ---hHHHhcCCCCCccCccc---ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11112111111 01110 11222223223 34899999986 566677777664410 02345577
Q ss_pred EEeCChH----------------------HHhhcCC-----CCcceeCCCCChHHHHHHHHHh
Q 010799 463 LITREAY----------------------VARSFSP-----SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 463 iTtR~~~----------------------~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+||.... +...+.+ -..++...||+.++..+++...
T Consensus 713 ~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~ 775 (852)
T TIGR03346 713 MTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred EeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHH
Confidence 7776511 1111111 2357888999998888777654
No 204
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00088 Score=70.33 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=37.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887542 234567899999999999998874
No 205
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.46 E-value=0.00017 Score=66.01 Aligned_cols=49 Identities=10% Similarity=-0.092 Sum_probs=35.2
Q ss_pred cccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 131 KKTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 131 ~~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.-.+++|.++-++.+.-++.. ....+.-+-.||++|+||||||+.+.+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc
Confidence 357899999999887665542 3346778889999999999999999964
No 206
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00047 Score=67.72 Aligned_cols=114 Identities=13% Similarity=0.178 Sum_probs=64.0
Q ss_pred cccccchhhHH--H-HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHH
Q 010799 133 TGILDLNKEVN--K-LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILK 209 (501)
Q Consensus 133 ~~~vg~~~~~~--~-l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~ 209 (501)
.++||.+.-+. . |-+++..+ ++.-.-.||++|+||||||+.+.. .....| ..+|-.++-.+=++++++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHH
Confidence 45666654442 2 33333332 455566899999999999999984 333333 333333322222223322
Q ss_pred HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCC--ChhHHHHHhhcCCCCCCCcEEEE--Eecccc
Q 010799 210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINAR--TPDIWDILKYLFPNSSNGSRVIL--SFQEAD 272 (501)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iiv--Ttr~~~ 272 (501)
... +....|+|.+|.||.|. |..+=+.+ +|.-.+|.-|+| ||.|+.
T Consensus 95 ~a~--------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPs 144 (436)
T COG2256 95 EAR--------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPS 144 (436)
T ss_pred HHH--------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCC
Confidence 211 22234899999999995 33333334 444566887775 566555
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.46 E-value=0.00018 Score=67.33 Aligned_cols=40 Identities=10% Similarity=-0.053 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 138 LNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+..++.+.+++.. .....+.++|.+|+|||+||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34566667776543 24567889999999999999999864
No 208
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.46 E-value=0.00041 Score=64.65 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh----ccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL----TQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l----~~~~~ 408 (501)
..|..+|..+=..-+++.|+|.+|+|||++|.+++. .....-..++| ++....+. .-+.+++... .....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~y--i~~e~~~~--~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAY--IDTEGLSS--ERFRQIAGDRPERAASSII 79 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EECCCCCH--HHHHHHHhHChHhhhcCEE
Confidence 345555543334557999999999999999999887 33333334567 66543332 3333333321 10000
Q ss_pred -CCCCCHHHH---HHHHHHhcCCceEEEEEcCCCC
Q 010799 409 -DEESSLDDL---ESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 409 -~~~~~~~~~---~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
....+..+. ...+...+..+.-++|+|.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHH
Confidence 012222232 3344455544466899999764
No 209
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.001 Score=70.15 Aligned_cols=46 Identities=15% Similarity=-0.021 Sum_probs=37.8
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++||.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999998653 234567899999999999988864
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.45 E-value=0.00045 Score=64.70 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH----hccCC-C
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ----LTQDE-V 408 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~----l~~~~-~ 408 (501)
.|.++|..+=..-.++.|+|++|+|||++|.+++. .....-..++| ++.. ..+...+ .+++.. +.... .
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~y--i~~e-~~~~~r~-~~~~~~~~~~~~~~~~~ 84 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIY--IDTE-GLSPERF-KQIAGEDFEELLSNIII 84 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EECC-CCCHHHH-HHHHhhChHhHhhCeEE
Confidence 34455544334557999999999999999999887 33333456678 7765 3443332 233322 10000 0
Q ss_pred CCCCCHH---HHHHHHHHhcCCceEEEEEcCCC
Q 010799 409 DEESSLD---DLESEFTGILYEKRYLVVLDDVH 438 (501)
Q Consensus 409 ~~~~~~~---~~~~~l~~~l~~~r~LlVlDnv~ 438 (501)
....+.. +.+..+.+++..+.-++|+|.+.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 85 FEPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 0122222 23444455554566799999975
No 211
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0013 Score=69.57 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhC
Confidence 6999999999999999999886
No 212
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.45 E-value=0.00072 Score=75.22 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=40.4
Q ss_pred eeecchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799 325 VVSMENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKN 375 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~ 375 (501)
++||+.+++.|...+.+- .....++.+.|.+|+|||+|++++.. .+...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 789999999999988653 33446999999999999999999987 44443
No 213
>PRK09354 recA recombinase A; Provisional
Probab=97.45 E-value=0.00068 Score=66.85 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=62.4
Q ss_pred HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799 334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---- 408 (501)
Q Consensus 334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---- 408 (501)
.|..+|. .+=+.-+++-|+|++|+|||+||.+++. .....-..++| +...+..+.. .+..++.+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~y--Id~E~s~~~~-----~a~~lGvdld~lli 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAF--IDAEHALDPV-----YAKKLGVDIDNLLV 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--ECCccchHHH-----HHHHcCCCHHHeEE
Confidence 3445554 3435568999999999999999999876 33334455678 7776655542 3344433211
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
.+..+.++....+...+.. ..-+||+|.+..
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence 1344566777777776654 456999999764
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.45 E-value=0.00025 Score=69.85 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=53.9
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..+.++|++|+|||.||..+++ .....-..+++ +++ .+++..+..... ... ... ...+ +.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y--~t~------~~l~~~l~~~~~-~~~---~~~---~~~~-~~l~ 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIY--RTA------DELIEILREIRF-NND---KEL---EEVY-DLLI 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEE--EEH------HHHHHHHHHHHh-ccc---hhH---HHHH-HHhc
Confidence 6799999999999999999998 44443334555 443 233333332111 110 011 1112 2222
Q ss_pred CceEEEEEcCCCC----hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 427 EKRYLVVLDDVHS----PGAWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 427 ~~r~LlVlDnv~~----~~~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
..=||||||+.. ......+...+... ...+..+||||-.
T Consensus 246 -~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R-~~~~k~tIiTSNl 288 (329)
T PRK06835 246 -NCDLLIIDDLGTEKITEFSKSELFNLINKR-LLRQKKMIISTNL 288 (329)
T ss_pred -cCCEEEEeccCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEECCC
Confidence 224899999954 22223444444431 2335567888764
No 215
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.001 Score=72.48 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+..|.+++..+. =...+-++|..|+||||+|+.+.+.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999987642 2344578999999999999998753
No 216
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.44 E-value=0.00067 Score=73.21 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhccccc---ccccce--eEEEEcCCCCCHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYECETV---KEYFQC--RAWVPVPEELERREL 203 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v---~~~F~~--~~wv~vs~~~~~~~l 203 (501)
+..+.||+++.++|...|... ...-.++-|+|++|+|||+.++.|.+.-.- ...+.. .++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 356889999999999988742 223357789999999999999999853211 112222 234433444577888
Q ss_pred HHHHHHHhcCCCCcCc---chHHHHHHHHccC---CeEEEEEecCC
Q 010799 204 VTDILKQVGGSKVEKQ---LDPQKKLRKLFTE---NRYLVVIINAR 243 (501)
Q Consensus 204 ~~~i~~~~~~~~~~~~---~~~~~~l~~~l~~---kr~LlVlDdv~ 243 (501)
...|.+++........ .+....+...+.. ...+||||+|.
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 8888888854332211 2234445444422 23589999985
No 217
>PLN03025 replication factor C subunit; Provisional
Probab=97.43 E-value=0.00093 Score=66.15 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=35.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.++.+..|..++..+ +.+.+-++|.+|+||||+|+.+.+
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 457889888888888777654 334467899999999999998875
No 218
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0027 Score=64.42 Aligned_cols=153 Identities=12% Similarity=0.149 Sum_probs=81.8
Q ss_pred cccceeecch---hHHHHHHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeC-CC
Q 010799 321 EVTAVVSMEN---DILKLAKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS-QD 389 (501)
Q Consensus 321 ~~~~fvGR~~---~~~~l~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~-~~ 389 (501)
.++++-|-++ |++++.++|.++. .=++-|.++|++|.|||-||+.++. +..-. | ++++ +.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG--EA~VP-----F--F~~sGSE 372 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG--EAGVP-----F--FYASGSE 372 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc--ccCCC-----e--Eeccccc
Confidence 3566777664 5666677775532 2346799999999999999999988 33222 2 3332 22
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASP 456 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~ 456 (501)
++.. +-+ -.-..+.+.+...-..-+|+|++|+++.. ..++.++..+.-+..+
T Consensus 373 FdEm---------~VG------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 373 FDEM---------FVG------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred hhhh---------hhc------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 2110 000 11122333344444455899999998861 2245566655553123
Q ss_pred CCCEEEEEeCC-hHHHhhcCC---CCcceeCCCCChHHHHHHHHH
Q 010799 457 IGSRVILITRE-AYVARSFSP---SIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 457 ~~~~iIiTtR~-~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
.|.-||-.|-. +.+...+-. ....+.|+..+..--.++|..
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~ 482 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKL 482 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHH
Confidence 44433333433 333333322 344566666555444444443
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00053 Score=58.24 Aligned_cols=88 Identities=16% Similarity=-0.080 Sum_probs=44.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-CcchHHHHHHHHccCCe-
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-KQLDPQKKLRKLFTENR- 234 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~l~~~l~~kr- 234 (501)
..+.|+|.+|+||||+++.+..... ......+.+..+........... .......... ........+.+..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999985322 22112334433332221111111 0111111111 11112344445554444
Q ss_pred EEEEEecCCChhH
Q 010799 235 YLVVIINARTPDI 247 (501)
Q Consensus 235 ~LlVlDdv~~~~~ 247 (501)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999986444
No 220
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.42 E-value=0.00099 Score=65.90 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=68.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
..+++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++.. ...| ..+..+. .. ...++..+..+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~--~~~~---~~i~~~~-~~-~~~i~~~l~~~ 91 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEV--GAEV---LFVNGSD-CR-IDFVRNRLTRF 91 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh--Cccc---eEeccCc-cc-HHHHHHHHHHH
Confidence 4678999999999999987542 34677779999999999999998632 1111 2222222 12 11122211111
Q ss_pred cCCCCcCcchHHHHHHHHccCCeEEEEEecCCCh---hHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINARTP---DIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
... ..+.+.+-+||+||+... +....+...+.....++++|+||..
T Consensus 92 ~~~-------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 92 AST-------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred HHh-------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 100 001134457889998643 2233444444444567788888864
No 221
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.42 E-value=0.002 Score=63.91 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=40.0
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|+...+.++.+.+..-.....-|.|+|.+|+||+++|+.+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999988865444456899999999999999998765
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00057 Score=73.47 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=92.5
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-CCc-----cceeEEEEeCCCCChHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFP-----CRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-~f~-----~~~w~~v~~~~~~~~~~~~ 396 (501)
+.++||++++.++.+.|+....+.+ .++|.+|||||+++..++. ++.+ .-+ ..++ +.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~---sL---------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY---SL---------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE---Ee----------
Confidence 4589999999999999987655444 4679999999998888776 3322 211 1111 10
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
++.....+... ....++..+.+-+.+. ..+.+|++|.+... +.-+.|++.|.. + ..+.|-.
T Consensus 233 -D~g~LvAGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR---G-eL~~IGA 305 (786)
T COG0542 233 -DLGSLVAGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR---G-ELRCIGA 305 (786)
T ss_pred -cHHHHhccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc---C-CeEEEEe
Confidence 11222222221 2345555555555554 45899999998651 123445555555 2 2344544
Q ss_pred eCChHHHhhcC------CCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYVARSFS------PSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~~~~~~------~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|...+.-+.+. .....+.|+..+.+++...++..
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44444332222 25679999999999999988743
No 223
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0024 Score=68.31 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=90.9
Q ss_pred ccccceeecchh---HHHHHHHhhcC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 320 EEVTAVVSMEND---ILKLAKLTLNS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 320 ~~~~~fvGR~~~---~~~l~~~L~~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
-.+.++.|-++. +.++.++|.++ ..-++-+.|+||+|+|||-||++++. .. .+.| ++++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG--EA-----gVPF--~svSGS 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG--EA-----GVPF--FSVSGS 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhc--cc-----CCce--eeechH
Confidence 345778887755 45555556442 34557899999999999999999998 22 3344 565432
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------------hhHHHHHHhcCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------------GAWYDLKRIFSP 452 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------------~~~~~l~~~l~~ 452 (501)
++.+.+..... ....+.+...-.+.+++|.+|+++.. ..++.++....-
T Consensus 379 --------EFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 379 --------EFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred --------HHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 23333332211 12233333333456889999987651 224455554444
Q ss_pred CCCCCCCEEEE--EeCChH-HHhh-cCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799 453 QASPIGSRVIL--ITREAY-VARS-FSP--SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 453 ~~~~~~~~iIi--TtR~~~-~~~~-~~~--~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+.....||+ +|.... +... +.+ -...+.++..+.....++|.-++.
T Consensus 445 --f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 445 --FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLR 496 (774)
T ss_pred --CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhh
Confidence 233333333 343333 2222 222 456888999998888888887764
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.40 E-value=0.0018 Score=68.43 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhC
Confidence 6999999999999999999876
No 225
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.39 E-value=0.0019 Score=63.79 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=68.1
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc--CCCCCHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV--PEELERRELVTDILK 209 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v--s~~~~~~~l~~~i~~ 209 (501)
-.+++|++..++.|..++... ..+.+-++|.+|+||||+|+.+.+.-. ...+.. .++.+ +...... .....+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHHHHH
Confidence 457899999999999998754 344578999999999999999985321 111211 12222 2222222 1222222
Q ss_pred HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799 210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
.+..... .-...+-++++|++.. ....+.+...+......+.+|+++.
T Consensus 91 ~~~~~~~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 91 EFARTAP------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred HHHhcCC------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 1111000 0012345888999754 3345556655554445577777764
No 226
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.38 E-value=0.00066 Score=71.73 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=37.6
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++++|.+..++.+...+... ....+.|+|++|+|||++|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999877543 335678999999999999999875
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0002 Score=73.82 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=99.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
+.+++|-+.....|...+..+ .-.+--...|+-|+||||+|+-++......+.-. ..++.-...+.+|..
T Consensus 15 F~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKCISCKEINE 84 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhhhhhHhhhc
Confidence 577899999999999999653 2335667889999999999999876432221000 011111111122221
Q ss_pred H-------hccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHH
Q 010799 402 Q-------LTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYV 470 (501)
Q Consensus 402 ~-------l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~ 470 (501)
- +........++..++.+.+...-. ++--+.|+|+|.- ...++.|+..+-. ...+...|+.|++ ..+
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--PP~hV~FIlATTe~~Ki 162 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--PPSHVKFILATTEPQKI 162 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc--CccCeEEEEecCCcCcC
Confidence 1 001111011122222232222222 3445889999874 6778999999888 6667666665554 456
Q ss_pred HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+-+.-..|.+..++.++-...+..-+
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHH
Confidence 55555566789999999998877776543
No 228
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00024 Score=68.21 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=57.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
.-+-++|.+|+|||.||..+++... .+--..+++ +..+++..+...+...... ....+.+.+.+-. |
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~------~~~~ll~~i~~~~~~~~~~----~~~~~~~~l~~~d-l 181 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFV------NFPQLLNRIKSTYKSSGKE----DENEIIRSLVNAD-L 181 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEE------EHHHHHHHHHHHHhccccc----cHHHHHHHhcCCC-E
Confidence 3478999999999999999997432 222233455 3555666666555432111 1223344444333 8
Q ss_pred EEEecCC--ChhHHH--HHhhcCCC-CCCCcEEEEEec
Q 010799 237 VVIINAR--TPDIWD--ILKYLFPN-SSNGSRVILSFQ 269 (501)
Q Consensus 237 lVlDdv~--~~~~~~--~l~~~~~~-~~~gs~iivTtr 269 (501)
|||||+- ...+|. .+...+.. -..|..+|+||.
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999993 344553 23322221 134566888884
No 229
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.37 E-value=0.0014 Score=73.03 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=37.0
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++||++++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 678999999999999998653 22345899999999999998875
No 230
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0053 Score=60.38 Aligned_cols=155 Identities=9% Similarity=0.121 Sum_probs=89.4
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ce--eEEEEeCCCCChHHHHHHHHHHhc
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RA--WANVYVSQDFDMRSVFADILRQLT 404 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~--w~~v~~~~~~~~~~~~~~i~~~l~ 404 (501)
..+.|.+.+..+ .-++...++|+.|+||+++|..++...-..+.. .| .+ ...+.....+|+..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E 80 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c
Confidence 345555555332 334678899999999999999987643211111 00 00 000111222221110 0
Q ss_pred cCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCC
Q 010799 405 QDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSP 476 (501)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~ 476 (501)
.. .......+++.+ +.+.+. +++-++|+|+++. ....+.|+..+-. .++++.+|++|.+. .+...+.+
T Consensus 81 p~-~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 81 PI-DNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred cc-cCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh
Confidence 00 001122333332 223322 3456888999986 5667889999998 77788888887765 44444444
Q ss_pred CCcceeCCCCChHHHHHHHHHh
Q 010799 477 SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 477 ~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.-..+.+.+++.+++.+.+.+.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999888764
No 231
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.36 E-value=0.0019 Score=69.17 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-CCHHHHHHHHHHHhcCCCCc--Cc
Q 010799 143 NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-LERRELVTDILKQVGGSKVE--KQ 219 (501)
Q Consensus 143 ~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~~i~~~~~~~~~~--~~ 219 (501)
..|++.|... .+.+.+.|..++|.|||||+-+... ....=..+.|.+.... .+...+.+.++..++.-... ++
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 4566666644 3689999999999999999988862 1222346789998655 56788888888888732222 11
Q ss_pred -c------------hHHHHHHHHcc--CCeEEEEEecCC---ChhHHHHHhhcCCCCCCCcEEEEEeccccc
Q 010799 220 -L------------DPQKKLRKLFT--ENRYLVVIINAR---TPDIWDILKYLFPNSSNGSRVILSFQEADA 273 (501)
Q Consensus 220 -~------------~~~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 273 (501)
. .+...|..-|. .+...+||||-- +...-..+...+.....+-..|||||+.--
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 0 12223333332 357899999953 333234444444444457789999998653
No 232
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0017 Score=68.00 Aligned_cols=46 Identities=13% Similarity=-0.055 Sum_probs=37.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999997653 234567899999999999988864
No 233
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.34 E-value=0.00046 Score=59.28 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=62.6
Q ss_pred eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799 326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFPCRAWANVYVSQDFDMRSVFADILRQLT 404 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~ 404 (501)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..... ...|... ++.... .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~-----~~~~~~------~~~l~~-- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI-----DCASLP------AELLEQ-- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC-----CHHCTC------HHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe-----chhhCc------HHHHHH--
Confidence 57788888888877543344568899999999999999987763211 1122211 111110 111111
Q ss_pred cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
. +.-.|+|+|++. ...+..+...+... .....|+|.||+..
T Consensus 68 --------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~-~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 --------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQ-ERSNVRLIASSSQD 110 (138)
T ss_dssp --------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHC-TTTTSEEEEEECC-
T ss_pred --------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhc-CCCCeEEEEEeCCC
Confidence 1 233577899886 44556666666541 35678999998754
No 234
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.32 E-value=0.00076 Score=68.10 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=37.7
Q ss_pred ccccccchhhHHHHHHHHhcC--C---------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS--H---------SSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~--~---------~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++.|+++.+++|.+.+... . ...+-+.++|++|+|||+||+.+++.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999998877421 1 12445889999999999999999863
No 235
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.31 E-value=0.001 Score=61.00 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=65.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH-HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR-SVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
..+.|.|+.|+||||++..+.. .........++ . +..+.... .-...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~--t-~e~~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHIL--T-IEDPIEFVHESKRSLINQRE-----VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEE--E-EcCCccccccCccceeeecc-----cCCCccCHHHHHHHHh
Confidence 4789999999999999988777 34333333333 2 11111100 00000110100 0112234566777778
Q ss_pred CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
...+=+|++|++.+.+.+....... ..|..++.|+........+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a-----~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA-----ETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH-----HcCCEEEEEecCCcHHHHH
Confidence 7777899999998876665554433 2366688888877655443
No 236
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0021 Score=67.03 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=37.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999888776542 235677899999999999999975
No 237
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.30 E-value=0.0033 Score=62.97 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCh--------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh----hcCC-CCcceeCCCCChHHHHHHH
Q 010799 429 RYLVVLDDVHSP--------GAWYDLKRIFSPQASPIGSRVILITREAYVAR----SFSP-SIFLHQLRPLNEEESGKLF 495 (501)
Q Consensus 429 r~LlVlDnv~~~--------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~----~~~~-~~~~~~l~~L~~~ea~~Lf 495 (501)
+-+|||||+... +.+.++...+-. +.=.+||++|-+..... .+.. ..+.+.|.-.+.+-|.++.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 679999998652 112233333433 45678999887765444 3332 4568889999999999999
Q ss_pred HHhhc
Q 010799 496 QRRLK 500 (501)
Q Consensus 496 ~~~~~ 500 (501)
..++.
T Consensus 226 ~~~L~ 230 (431)
T PF10443_consen 226 LSQLD 230 (431)
T ss_pred HHHhc
Confidence 88764
No 238
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0019 Score=68.87 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=38.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998653 235678899999999999988864
No 239
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.29 E-value=0.00064 Score=66.49 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799 334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---- 408 (501)
Q Consensus 334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---- 408 (501)
.|..+|. .+=++-+++-|+|++|+|||+||.+++. .....-..++| ++..+..+.. .+..++.+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vy--Id~E~~~~~~-----~a~~lGvd~~~l~v 112 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAF--IDAEHALDPV-----YAKKLGVDLDNLLI 112 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEE--ECccccHHHH-----HHHHcCCCHHHhee
Confidence 3444553 3335568999999999999999999876 33333455677 7765554432 3333333211
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
.+..+.++....+...+.. ..-+||+|.+..
T Consensus 113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEcchHh
Confidence 1344566777777766654 456899999753
No 240
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0021 Score=66.75 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=36.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+.....|.+.+..+. -.+.+-++|++|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999888888887776542 234578899999999999999865
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.29 E-value=0.0016 Score=57.15 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=27.3
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
++.|+|++|+|||+++..++. .....-..++| ++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~--~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVY--VDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEE--EECCcc
Confidence 368999999999999999987 44333345666 665433
No 242
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0061 Score=56.15 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=80.5
Q ss_pred ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++-|.+-..+++.+...- +-+.++-|.++|++|+|||-||+.+++ .....| +.+...
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~--~t~a~f-------irvvgs- 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAF-------IRVVGS- 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh--ccchhe-------eeeccH-
Confidence 35567777666666555421 225668899999999999999999999 444444 443221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hh---HHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GA---WYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~---~~~l~~~l~~~~ 454 (501)
++.....+..+ .-..+.++-.-.+-+-+|++|+++.. +. +-+++....-+.
T Consensus 224 -------efvqkylgegp------rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd 290 (408)
T KOG0727|consen 224 -------EFVQKYLGEGP------RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD 290 (408)
T ss_pred -------HHHHHHhccCc------HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC
Confidence 22222223222 11222222223345788999998751 11 122333333222
Q ss_pred CCCCCEEEEEeCCh-HHHhhc-C--CCCcceeCCCCChHHHHHHHH
Q 010799 455 SPIGSRVILITREA-YVARSF-S--PSIFLHQLRPLNEEESGKLFQ 496 (501)
Q Consensus 455 ~~~~~~iIiTtR~~-~~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~ 496 (501)
...+.++|..|-.. .+...+ . .-...++.+..+..+-+-.|.
T Consensus 291 q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ 336 (408)
T KOG0727|consen 291 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 336 (408)
T ss_pred cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHH
Confidence 34567888866433 222211 1 134456666444444444443
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0012 Score=61.90 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=79.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeE--EEEeCCCCChHHHHHHHHHHhccCCCC------CCCCHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA--NVYVSQDFDMRSVFADILRQLTQDEVD------EESSLDDL 417 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~--~v~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~ 417 (501)
-.+++|+|.+|+||||+++.+.. -.......+.|+ ++.--......+...+++..++..... +-+.-+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 36999999999999999999988 444444444441 011011122334455566655543211 23344445
Q ss_pred HHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799 418 ESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP 476 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~ 476 (501)
.-.+.+.|.-++-++|.|+.-+. .+.-.|+..+.. ..|...|+.|.+-.+...++.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~---~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE---ELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH---HhCCeEEEEEEEHHhhhhhcc
Confidence 55677777888999999997652 333344444443 557889999999988888774
No 244
>PRK06921 hypothetical protein; Provisional
Probab=97.28 E-value=0.001 Score=63.74 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccC-Ccccee
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAW 381 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w 381 (501)
....+.++|.+|+|||.||..+++ .+... ...++|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y 151 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLY 151 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEE
Confidence 346899999999999999999998 54443 333455
No 245
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.28 E-value=0.00068 Score=65.06 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=31.6
Q ss_pred cccccchhhHHHHHH---HHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLAD---FLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~---~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++|.+..+..|.+ ++.. ..+....+.++|.+|+||||+|+.+.+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 357787766665543 3311 123456678899999999999999974
No 246
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.00055 Score=62.25 Aligned_cols=112 Identities=17% Similarity=0.037 Sum_probs=64.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGIL 425 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l 425 (501)
.++.++|+.|.||||++..++. +...+-..+.. +. ...+.......++.+++..... .....+++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i--~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLV--FK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEE--Ee--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 4788999999999999998887 44333333333 32 1111122223344454432211 11234555666655 3
Q ss_pred CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 426 YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
.++.-+||+|+++-. +++.++...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~----~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD----DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH----HcCCeEEEEecCcc
Confidence 334458999999763 33455555433 34889999999843
No 247
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0024 Score=68.07 Aligned_cols=45 Identities=13% Similarity=0.002 Sum_probs=36.8
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHH
Confidence 4678999998999999888653 23566889999999999998884
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.27 E-value=0.00047 Score=67.38 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=65.1
Q ss_pred ecchhHHHHHHHhhcCC--CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799 327 SMENDILKLAKLTLNSS--DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT 404 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~~--~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~ 404 (501)
+|........+++..-. ....-+.|+|+.|+|||.||..+++ .....-..+.+ ++++ .++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~--~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTL--LHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEE--EEHH------HHHHHHHHHHh
Confidence 34444444455553211 2346899999999999999999999 44333233455 4432 34444444332
Q ss_pred cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHH--HHHHhcCCCCCCCCCEEEEEeCC
Q 010799 405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWY--DLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~--~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
.. +..+.++. + .+.=||||||+.. ...|. .++..+...+...+..+|+||-.
T Consensus 205 ~~------~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 12222222 2 2345899999864 34443 34443322102346678888864
No 249
>PRK10536 hypothetical protein; Provisional
Probab=97.27 E-value=0.0016 Score=61.19 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=74.6
Q ss_pred ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE--c--CC-----CCCH
Q 010799 130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP--V--PE-----ELER 200 (501)
Q Consensus 130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~--v--s~-----~~~~ 200 (501)
.....+.++......++.+|.. ..++.+.|.+|+|||+||.....+.-..+.|+..+-+. + .+ +-+.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3345677889999999998865 24889999999999999988775322233344333221 0 10 0122
Q ss_pred HHH----HHHHHHHhcCCCCcCcchHHHH-----------HHHHccCCeE---EEEEecCCChhHHHHHhhcCCCCCCCc
Q 010799 201 REL----VTDILKQVGGSKVEKQLDPQKK-----------LRKLFTENRY---LVVIINARTPDIWDILKYLFPNSSNGS 262 (501)
Q Consensus 201 ~~l----~~~i~~~~~~~~~~~~~~~~~~-----------l~~~l~~kr~---LlVlDdv~~~~~~~~l~~~~~~~~~gs 262 (501)
.+- +..+...+..-... ...... -..+++|+.+ +||+|+..+... .++...+..-+.+|
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~--~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~s 204 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGA--SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhCh--HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCC
Confidence 221 22222222110000 001111 1235677665 999999877544 44555555556799
Q ss_pred EEEEEe
Q 010799 263 RVILSF 268 (501)
Q Consensus 263 ~iivTt 268 (501)
++|+|=
T Consensus 205 k~v~~G 210 (262)
T PRK10536 205 TVIVNG 210 (262)
T ss_pred EEEEeC
Confidence 998874
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.27 E-value=0.00071 Score=62.57 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=55.4
Q ss_pred hhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh-c---cCC-CCCCCC
Q 010799 339 TLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL-T---QDE-VDEESS 413 (501)
Q Consensus 339 L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l-~---~~~-~~~~~~ 413 (501)
|..+=..-+++.|+|++|+|||+++.+++. .....-..++| ++... .+...+.+ ++... . ... .....+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~y--i~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVY--IDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCC
Confidence 433334558999999999999999999887 33333456788 77754 44444333 33221 0 000 001122
Q ss_pred HHH---HHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 414 LDD---LESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 414 ~~~---~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
..+ ....+.+.+.. +.-+||+|.+..
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHH
Confidence 222 35555555544 456999999864
No 251
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.26 E-value=0.0018 Score=60.09 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=72.2
Q ss_pred cccccccccccccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799 123 SAENVDSAKKTGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER 200 (501)
Q Consensus 123 ~~~~~~~~~~~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~ 200 (501)
+...+++.....++|.+..++.|++=-.. .+....-+-+||..|+|||+|++.+.+.-.-.. .+ -|-|++. +
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-~- 90 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-D- 90 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-H-
Confidence 33444555568899999999887764331 112344566799999999999999985322111 11 1222221 0
Q ss_pred HHHHHHHHHHhcCCCCcCcchHHHHHHHHc--cCCeEEEEEecCC---ChhHHHHHhhcCCCC---CC-CcEEEEEeccc
Q 010799 201 RELVTDILKQVGGSKVEKQLDPQKKLRKLF--TENRYLVVIINAR---TPDIWDILKYLFPNS---SN-GSRVILSFQEA 271 (501)
Q Consensus 201 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~---~~~~~~~l~~~~~~~---~~-gs~iivTtr~~ 271 (501)
......|...| +..||+|.+||+. +...+..|++.+..+ .+ .-.|..||-..
T Consensus 91 -------------------L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 -------------------LGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred -------------------hccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 00122333333 3578999999984 345577777776532 22 33344555444
Q ss_pred cch
Q 010799 272 DAA 274 (501)
Q Consensus 272 ~va 274 (501)
+..
T Consensus 152 HLv 154 (249)
T PF05673_consen 152 HLV 154 (249)
T ss_pred hcc
Confidence 443
No 252
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.00013 Score=62.74 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=45.6
Q ss_pred EEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCc
Q 010799 349 ISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEK 428 (501)
Q Consensus 349 v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 428 (501)
|.|+|++|+|||+||+.++. .....+ .- +.++...+..+++...--. .......... +...+. +
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~~---~~--i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~---l~~a~~-----~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRPV---IR--INCSSDTTEEDLIGSYDPS-NGQFEFKDGP---LVRAMR-----K 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCEE---EE--EE-TTTSTHHHHHCEEET--TTTTCEEE-C---CCTTHH-----E
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcce---EE--EEeccccccccceeeeeec-cccccccccc---cccccc-----c
Confidence 68999999999999999988 442221 12 5666666655543322111 0000000000 000111 7
Q ss_pred eEEEEEcCCCC--hhhHHHHHHhc
Q 010799 429 RYLVVLDDVHS--PGAWYDLKRIF 450 (501)
Q Consensus 429 r~LlVlDnv~~--~~~~~~l~~~l 450 (501)
..+++||+++. .+.+..|...+
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHH
T ss_pred eeEEEECCcccCCHHHHHHHHHHH
Confidence 89999999984 34444444433
No 253
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.0013 Score=60.67 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+.|+|.+|+|||+||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999988
No 254
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.002 Score=65.27 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
.....+.+.|++|+|||+||..++. ...|+. |.+-++.++. ..+...-...++.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPF-----vKiiSpe~mi-----------------G~sEsaKc~~i~k 589 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPF-----VKIISPEDMI-----------------GLSESAKCAHIKK 589 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCe-----EEEeChHHcc-----------------CccHHHHHHHHHH
Confidence 3456889999999999999999887 455654 4443322211 1111222223333
Q ss_pred h----cCCceEEEEEcCCCChhhH------------HHHHHhcCCCCCCCCCE--EEEEeCChHHHhhcCC---CCccee
Q 010799 424 I----LYEKRYLVVLDDVHSPGAW------------YDLKRIFSPQASPIGSR--VILITREAYVARSFSP---SIFLHQ 482 (501)
Q Consensus 424 ~----l~~~r~LlVlDnv~~~~~~------------~~l~~~l~~~~~~~~~~--iIiTtR~~~~~~~~~~---~~~~~~ 482 (501)
. -++.--.||+||++..-+| ..|.-.|... ...|-+ |+-||....+...|+- -...|.
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~-ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQ-PPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccC-CCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 3 3344568999999875443 2333334431 222333 4447777788877764 456888
Q ss_pred CCCCCh-HHHHHHHHH
Q 010799 483 LRPLNE-EESGKLFQR 497 (501)
Q Consensus 483 l~~L~~-~ea~~Lf~~ 497 (501)
|+.++. ++..+.++.
T Consensus 669 Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCccCchHHHHHHHHH
Confidence 888887 666665543
No 255
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.008 Score=59.54 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 428 KRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 428 ~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.-++|+|+++. ....+.|+..+-. .++++.+|++|.+ ..+...+.+.-..+.+.+++.++..+.+.+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 355888999986 5667889999888 7778877766665 4455454445578999999999999888653
No 256
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.25 E-value=0.0029 Score=62.71 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=82.9
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT 404 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~ 404 (501)
++|....+.++.+.+..-.....-|.|+|.+|+||+++|+.+..... ..-...+- |+|.... ...+... +.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~--vnc~~~~--~~~l~~~---lf 71 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVK--LNCAALS--ENLLDSE---LF 71 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEE--EeCCCCC--hHHHHHH---Hh
Confidence 47888888888887755444456789999999999999998876221 11112223 5554322 1222221 11
Q ss_pred cCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH---
Q 010799 405 QDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY--- 469 (501)
Q Consensus 405 ~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~--- 469 (501)
+.... ...... .....+-....=.|+||+++. ...+..|+..+.... .....+||.||....
T Consensus 72 G~~~g~~~ga~~---~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~ 148 (329)
T TIGR02974 72 GHEAGAFTGAQK---RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPAL 148 (329)
T ss_pred ccccccccCccc---ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHH
Confidence 11100 000000 000001112234689999986 455666666654410 012358888775332
Q ss_pred ---------HHhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799 470 ---------VARSFSPSIFLHQLRPLN--EEESGKLFQ 496 (501)
Q Consensus 470 ---------~~~~~~~~~~~~~l~~L~--~~ea~~Lf~ 496 (501)
+...+ ....+.++||. .+|--.|+.
T Consensus 149 ~~~g~fr~dL~~rl--~~~~i~lPpLReR~eDI~~L~~ 184 (329)
T TIGR02974 149 AAEGRFRADLLDRL--AFDVITLPPLRERQEDIMLLAE 184 (329)
T ss_pred hhcCchHHHHHHHh--cchhcCCCchhhhhhhHHHHHH
Confidence 11111 35678999998 456555543
No 257
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0074 Score=59.23 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc---c--ceeEEEEeCCCCChHHHHHHHHHHhcc
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP---C--RAWANVYVSQDFDMRSVFADILRQLTQ 405 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~---~--~~w~~v~~~~~~~~~~~~~~i~~~l~~ 405 (501)
..+.|...+.. +.-++.+.++|+.|+||+++|..++...-...... | .-| +...+.+|+.-+. ...
T Consensus 12 ~~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~--~~~g~HPD~~~i~------~~p 82 (319)
T PRK08769 12 AYDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQL--IAAGTHPDLQLVS------FIP 82 (319)
T ss_pred HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHH--HhcCCCCCEEEEe------cCC
Confidence 34555555533 23345799999999999999998876432111110 0 001 1111111111000 000
Q ss_pred CCCC----CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhh
Q 010799 406 DEVD----EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARS 473 (501)
Q Consensus 406 ~~~~----~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~ 473 (501)
.... .....+ .+..+.+.+. +.+-++|||+++. ....+.|+..+-. ...++.+|++|.+ ..+...
T Consensus 83 ~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 83 NRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--PSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred CcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchH
Confidence 0000 001122 2223333332 3456899999986 4567888888888 6778877777765 344445
Q ss_pred cCCCCcceeCCCCChHHHHHHHHH
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
+.+.-..+.+.+++.+++.+.+.+
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHH
Confidence 444566889999999999887764
No 258
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0025 Score=65.04 Aligned_cols=46 Identities=11% Similarity=-0.078 Sum_probs=36.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999998888887542 234577899999999999988764
No 259
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0029 Score=64.10 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=36.3
Q ss_pred cccccchhhHHHHHHHHhcCCC--------CeeEEEEEeeCChhhHHHHhhhh
Q 010799 133 TGILDLNKEVNKLADFLIRSHS--------SLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~--------~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
.+++|.+..++.|.+.+..+.. -.+-+-++|++|+||||+|+.+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 4688999999999999986421 23557789999999999998875
No 260
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0033 Score=66.35 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=37.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999998643 234567899999999999988853
No 261
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.24 E-value=0.00099 Score=59.17 Aligned_cols=44 Identities=16% Similarity=0.384 Sum_probs=33.5
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++|.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 46888888888888755444447888999999999999999887
No 262
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.24 E-value=0.00085 Score=65.57 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=60.6
Q ss_pred HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799 334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---- 408 (501)
Q Consensus 334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---- 408 (501)
.|..+|. .+=++-+++.|+|++|+|||+||.+++. .....-..++| ++..+..+.. .+..++.+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~y--Id~E~~~~~~-----~a~~lGvd~~~l~v 112 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAF--IDAEHALDPV-----YARKLGVDIDNLLV 112 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EcccchhHHH-----HHHHcCCCHHHeEE
Confidence 3444453 3445568999999999999999999877 33333345667 7665544432 2334433211
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
.+..+.++....+...+.. ..-+||+|.+..
T Consensus 113 ~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 113 SQPDTGEQALEIAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred ecCCCHHHHHHHHHHHhhccCCcEEEEcchhh
Confidence 1344566677777666654 466999999764
No 263
>CHL00181 cbbX CbbX; Provisional
Probab=97.24 E-value=0.0014 Score=63.52 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=53.4
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
..+.++|.+|+||||+|+.+.........-...-|+.++ ...+. ..+.+.. .......+.+. .+ -+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~----~~~~g~~---~~~~~~~l~~a-~g--gV 125 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLV----GQYIGHT---APKTKEVLKKA-MG--GV 125 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHH----HHHhccc---hHHHHHHHHHc-cC--CE
Confidence 347789999999999999996421111111112245554 22222 2221111 11112223322 23 38
Q ss_pred EEEecCCC-----------hhHHHHHhhcCCCCCCCcEEEEEeccccch
Q 010799 237 VVIINART-----------PDIWDILKYLFPNSSNGSRVILSFQEADAA 274 (501)
Q Consensus 237 lVlDdv~~-----------~~~~~~l~~~~~~~~~gs~iivTtr~~~va 274 (501)
|+||++.. .+.-+.|...+.+...+.+||.++....+.
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 89999853 223344555555555566777777655443
No 264
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.23 E-value=0.0029 Score=67.65 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEE-------EcCCCCCH------------------------------
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV-------PVPEELER------------------------------ 200 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv-------~vs~~~~~------------------------------ 200 (501)
+++|+|..|+|||||.+.+. .........+.+ .+++.+..
T Consensus 35 ~~~iiG~NGsGKSTLlk~i~---G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 111 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMA---GVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA 111 (556)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred ------------------------------HHHHHHHHHHhcCCCCcCcch-------HHHHHHHHccCCeEEEEEecCC
Q 010799 201 ------------------------------RELVTDILKQVGGSKVEKQLD-------PQKKLRKLFTENRYLVVIINAR 243 (501)
Q Consensus 201 ------------------------------~~l~~~i~~~~~~~~~~~~~~-------~~~~l~~~l~~kr~LlVlDdv~ 243 (501)
.+-...+++.++......... -.-.|...|-.+.-+|+||+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt 191 (556)
T PRK11819 112 YAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191 (556)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCC
Q ss_pred C---hhHHHHHhhcCCCCCCCcEEEEEeccccchh--cccCCCCCCCccc------------------------------
Q 010799 244 T---PDIWDILKYLFPNSSNGSRVILSFQEADAAR--CRNMSFFGGESSF------------------------------ 288 (501)
Q Consensus 244 ~---~~~~~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~~l~~~~~~------------------------------ 288 (501)
+ ...-..+...+..-. + .||++|.+.+.+. +...-.+......
T Consensus 192 ~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (556)
T PRK11819 192 NHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKA 269 (556)
T ss_pred CcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------------------CcceeeeccccCCCCCCCCCCCCCCCCccccccccceeecchhHHHHHHHhhc
Q 010799 289 ---------------------------KPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLN 341 (501)
Q Consensus 289 ---------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~ 341 (501)
+.................+..+..-...--......-+|....++.+.=-+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~ 349 (556)
T PRK11819 270 LKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPP 349 (556)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcC
Q ss_pred CCCCceEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799 342 SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW 381 (501)
Q Consensus 342 ~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w 381 (501)
+. +++|.|+.|+|||||.+.++. .....-..+.|
T Consensus 350 Ge----~~~l~G~NGsGKSTLl~~i~G--~~~p~~G~i~~ 383 (556)
T PRK11819 350 GG----IVGIIGPNGAGKSTLFKMITG--QEQPDSGTIKI 383 (556)
T ss_pred CC----EEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEE
No 265
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0081 Score=59.55 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=89.7
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ce----eEEEEeCCCCChHHHHHHHHH
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RA----WANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~----w~~v~~~~~~~~~~~~~~i~~ 401 (501)
...+.|.+.+.. +.-++-..++|+.|+||+++|..++...--.+.- .| .+ + +.....+|+..+
T Consensus 9 ~~~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~--~~~g~HPD~~~i------ 79 (334)
T PRK07993 9 PDYEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQL--MQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCCEEEE------
Confidence 345566666643 2344688899999999999999987643111110 01 00 1 111112221110
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhh
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARS 473 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~ 473 (501)
...........+++.. +.+.+. +.+-++|+|+++. ....+.|+..+-. .+.++..|++|.+. .+...
T Consensus 80 --~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 --TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--PPENTWFFLACREPARLLAT 154 (334)
T ss_pred --ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHH
Confidence 0000000122333332 333332 3566899999986 5667889999998 77777777777664 35545
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHh
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.|.-..+.+.+++.+++.+.+...
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHc
Confidence 4445567899999999998877653
No 266
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0046 Score=54.72 Aligned_cols=62 Identities=13% Similarity=0.305 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEcCC----CChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 412 SSLDDLESEFTGILYEKRYLVVLDDV----HSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 412 ~~~~~~~~~l~~~l~~~r~LlVlDnv----~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+.-++..-.+.+.+-+++-||+-|+- +....|+ +...|... +..|+.||++|.+..+...+.
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeei-nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEI-NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHH-hhcCcEEEEEeccHHHHHhcc
Confidence 33444555666667788889998873 3333333 33333332 456999999999999988876
No 267
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00095 Score=56.42 Aligned_cols=22 Identities=18% Similarity=-0.064 Sum_probs=19.2
Q ss_pred EEEEeeCChhhHHHHhhhhccc
Q 010799 159 ISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 159 i~I~G~~GvGKTtLa~~v~~~~ 180 (501)
|-|+|.+|+||||+|+.+.+.-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999643
No 268
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.21 E-value=0.004 Score=66.27 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=87.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
....++|....+.++.+.+..-......|.|+|.+|+|||++|+.+.+.. ...-...+. ++|..-.. ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~--i~c~~~~~--~~~~~-- 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVK--VNCAALSE--TLLES-- 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEE--eecCCCCH--HHHHH--
Confidence 34679999999999998885544445678999999999999999987732 111112233 55543321 22221
Q ss_pred HHhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCC---------CCCCEEEEEeCCh
Q 010799 401 RQLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQAS---------PIGSRVILITREA 468 (501)
Q Consensus 401 ~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~---------~~~~~iIiTtR~~ 468 (501)
.+.+..... ..... .....+.....=.|+||+++. ...+..|+..+..... ....+||.||...
T Consensus 266 -~lfg~~~~~~~~~~~---~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 -ELFGHEKGAFTGAIA---QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred -HHcCCCCCccCCCCc---CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 221211100 00000 000001112234688999986 4556667666644100 0135788877543
Q ss_pred HHHhhcCC----------CCcceeCCCCC--hHHHHHHHH
Q 010799 469 YVARSFSP----------SIFLHQLRPLN--EEESGKLFQ 496 (501)
Q Consensus 469 ~~~~~~~~----------~~~~~~l~~L~--~~ea~~Lf~ 496 (501)
........ ....+.++||. .+|--.|+.
T Consensus 342 l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~ 381 (534)
T TIGR01817 342 LEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAE 381 (534)
T ss_pred HHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHH
Confidence 21110000 24578899998 455554443
No 269
>PF14516 AAA_35: AAA-like domain
Probab=97.20 E-value=0.011 Score=58.79 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=91.6
Q ss_pred ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc-cCCccceeEEEEeCC-----CCChHHHHH
Q 010799 324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAWANVYVSQ-----DFDMRSVFA 397 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w~~v~~~~-----~~~~~~~~~ 397 (501)
-.|.|...-+++.+.|.+.+ ..+.|.|+-.+|||+|..++.+ ... ..+.+ ++ +++.. ..+....+.
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~-v~--id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRC-VY--IDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred cccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHH--HHHHCCCEE-EE--EEeecCCCcccCCHHHHHH
Confidence 35788866667777775422 5999999999999999999887 333 34443 35 55432 124444444
Q ss_pred ----HHHHHhccCCCC------CCCCHHHHHHHHHHhc-C--CceEEEEEcCCCCh-------hhHHHHHHhcCCCCC--
Q 010799 398 ----DILRQLTQDEVD------EESSLDDLESEFTGIL-Y--EKRYLVVLDDVHSP-------GAWYDLKRIFSPQAS-- 455 (501)
Q Consensus 398 ----~i~~~l~~~~~~------~~~~~~~~~~~l~~~l-~--~~r~LlVlDnv~~~-------~~~~~l~~~l~~~~~-- 455 (501)
.+..++...... ...+.......+.+++ . +++.+|+||+++.. .++-.++..+...+.
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 444444433211 1123334444555543 2 57899999999862 122222222221000
Q ss_pred --CCCCEEEEEeCC-hHHHhhc-CC---CCcceeCCCCChHHHHHHHHHh
Q 010799 456 --PIGSRVILITRE-AYVARSF-SP---SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 456 --~~~~~iIiTtR~-~~~~~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
...-+.++.... ....... .+ .+..+.|++++.+|...|+.++
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 111223332211 1111111 11 4568999999999999998765
No 270
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0027 Score=66.88 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=91.6
Q ss_pred cceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 323 TAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
.++.|.+...+.+.+.+.. +-...+.+.++|++|+|||.||+.+++ .....| +.+... +
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-------i~v~~~-~ 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-------ISVKGS-E 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-------EEeeCH-H
Confidence 4566666666655544321 113446899999999999999999999 445555 333221 1
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIG 458 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~ 458 (501)
+.... -..+...+...+....+..++.|++|+++.. .....++..+.......+
T Consensus 312 -------l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 312 -------LLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred -------Hhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 11111 1223445555666666678999999998761 234445555543112233
Q ss_pred CEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhhc
Q 010799 459 SRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 459 ~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
..||-||-... +...+. .-...+.+++.+.++..+.|+.+..
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 33444443332 222211 1356899999999999999998764
No 271
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.19 E-value=0.004 Score=62.64 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..++.|.+++..+. -...+-++|.+|+||||+|+.+..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999887543 235677899999999999977753
No 272
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0022 Score=68.53 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=37.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999887643 234467899999999999998864
No 273
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.17 E-value=0.0023 Score=70.24 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=84.4
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
...+++|+...+.++.+.+..-......|.|+|.+|+|||.+|+.+.... ...-...+. ++|.... ...+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~--i~c~~~~--~~~~~~~- 446 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVK--MNCAAMP--AGLLESD- 446 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEE--EecccCC--hhHhhhh-
Confidence 34579999999999987775434445689999999999999999987632 111123333 5554332 1222211
Q ss_pred HHhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCCh
Q 010799 401 RQLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREA 468 (501)
Q Consensus 401 ~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~ 468 (501)
+.+..... ..........+ -....=.|+|||++. ...+..|...+.... .....+||.||...
T Consensus 447 --lfg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 447 --LFGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred --hcCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111100 00000111111 112234689999986 455566666654310 01345888888654
Q ss_pred HHHhh----cC------CCCcceeCCCCCh
Q 010799 469 YVARS----FS------PSIFLHQLRPLNE 488 (501)
Q Consensus 469 ~~~~~----~~------~~~~~~~l~~L~~ 488 (501)
..... +. -....+.++||.+
T Consensus 522 l~~~~~~~~f~~~L~~~l~~~~i~lPpLre 551 (686)
T PRK15429 522 LKKMVADREFRSDLYYRLNVFPIHLPPLRE 551 (686)
T ss_pred HHHHHHcCcccHHHHhccCeeEEeCCChhh
Confidence 21110 00 0245788999987
No 274
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0066 Score=56.19 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=86.7
Q ss_pred cccccccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE
Q 010799 317 EISEEVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY 385 (501)
Q Consensus 317 ~~~~~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~ 385 (501)
.+.+..+++-|-+..+++|.+.+.-+ -..+.-+.+|||+|.|||-+|+..+. +....|- .
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTFL-------K 235 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATFL-------K 235 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchHH-------H
Confidence 33445678899999999999887421 13446799999999999999999776 5555552 1
Q ss_pred eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHh
Q 010799 386 VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRI 449 (501)
Q Consensus 386 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~ 449 (501)
...+ ++...+-+. ...-..+.+.-.-...+.+|++|+++.. ...-+++..
T Consensus 236 LAgP--------QLVQMfIGd------GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 236 LAGP--------QLVQMFIGD------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred hcch--------HHHhhhhcc------hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 1111 011111111 1111222222222345789999997641 123355566
Q ss_pred cCCCCCCCCCEEEEEeCChHHHh--hc--CCCCcceeCCCCChHHHHHHHH
Q 010799 450 FSPQASPIGSRVILITREAYVAR--SF--SPSIFLHQLRPLNEEESGKLFQ 496 (501)
Q Consensus 450 l~~~~~~~~~~iIiTtR~~~~~~--~~--~~~~~~~~l~~L~~~ea~~Lf~ 496 (501)
|.-+......+||-.|-.-.+.. .+ +.-...++.+..+.+.-..+++
T Consensus 302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQ 352 (424)
T ss_pred hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHH
Confidence 66533345667777654332211 11 1145567776555554444444
No 275
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.15 E-value=0.0027 Score=68.74 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=83.6
Q ss_pred ccceeecchhHHHHHHHhh---c-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 322 VTAVVSMENDILKLAKLTL---N-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
..++.|.+...+++.+.+. . +..-.+-+.|+|++|+|||++|+.++. .....| +. ++.+.
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~--is~~~--- 220 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FT--ISGSD--- 220 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EE--EehHH---
Confidence 4567777766666655432 1 012234699999999999999999988 443333 11 22211
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQAS 455 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~~~ 455 (501)
+...... .....+...+.......+++|+||+++... .+..++..+..+..
T Consensus 221 -------~~~~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 -------FVEMFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred -------hHHhhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 1111111 112223333434444567899999987631 12333333332112
Q ss_pred CCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 456 PIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 456 ~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+.+.-+|.||..... ..... .....+.++..+.++-.++|..+.
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 334445556655442 22221 135688899999888888887664
No 276
>PRK08118 topology modulation protein; Reviewed
Probab=97.14 E-value=0.00087 Score=59.55 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=27.0
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccc-cCCcccee
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAW 381 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w 381 (501)
..|.|.|++|+||||||+.++...... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999844333 34666665
No 277
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.13 E-value=0.0041 Score=57.76 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=37.6
Q ss_pred cccceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++++|-+.+.+.|.+-... ......-+.+||..|+|||++++.+.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 457799999999998665421 123446788999999999999999888
No 278
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.13 E-value=0.0037 Score=60.05 Aligned_cols=170 Identities=20% Similarity=0.239 Sum_probs=97.1
Q ss_pred cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcc-cccccCCccceeEEEEeCCCC-ChHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYES-SYTKKNFPCRAWANVYVSQDF-DMRSVFAD 398 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~-~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~ 398 (501)
..|+|-.++..++..++.+. -+....+.|.||.|.|||.|......+ .++.++|-. +...... .-.-.+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~-----v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLL-----VRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEE-----EEECccchhhHHHHHH
Confidence 56999999999999988542 123357889999999999988776653 133444411 3332221 12234555
Q ss_pred HHHHhccCCCC---CCCCHHHHHHHHHHhcCC------ceEEEEEcCCCCh----hh--HHHHHHhcCCCCCCCCCEEEE
Q 010799 399 ILRQLTQDEVD---EESSLDDLESEFTGILYE------KRYLVVLDDVHSP----GA--WYDLKRIFSPQASPIGSRVIL 463 (501)
Q Consensus 399 i~~~l~~~~~~---~~~~~~~~~~~l~~~l~~------~r~LlVlDnv~~~----~~--~~~l~~~l~~~~~~~~~~iIi 463 (501)
|..|+...... ...+..+-...+-..|+. -++++|+|+++-. .+ +-.+.+.-... ..|=|-|-+
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~ 177 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGV 177 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEe
Confidence 66655543321 122333333333333332 2688999998752 11 12222222220 344566778
Q ss_pred EeCChH-------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 464 ITREAY-------VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 464 TtR~~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
|||-.- +-...+ ...++-+++++-++-.+++++.+
T Consensus 178 Ttrld~lE~LEKRVKSRFs-hr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFS-HRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcc-cceeeccCCCChHHHHHHHHHHh
Confidence 998542 233332 44577788888888888887654
No 279
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0031 Score=64.74 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999988653 124578999999999999999974
No 280
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.011 Score=54.51 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=87.3
Q ss_pred eeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799 325 VVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR 393 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~ 393 (501)
+-|-+..++++.+.+.-+ -..+.-+.++|++|.|||-||+.+++| ...-| +.++..
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~f--irvsgs---- 215 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTF--IRVSGS---- 215 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEE--EEechH----
Confidence 445677788877766322 235678999999999999999999983 22233 555532
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh----------------hhHHHHHHhcCCCCCC
Q 010799 394 SVFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQASP 456 (501)
Q Consensus 394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~~~ 456 (501)
++.+... +... .....+.-.- .+-+.+|++|++++. ...-+++..+.-+...
T Consensus 216 elvqk~i----gegs-------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ELVQKYI----GEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHHh----hhhH-------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 2222222 1111 1111111111 234678899998761 1233455555554456
Q ss_pred CCCEEEEEeCChHHH-hhc---CCCCcceeCCCCChHHHHHHHHHh
Q 010799 457 IGSRVILITREAYVA-RSF---SPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 457 ~~~~iIiTtR~~~~~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.+.+||..|-.-.+. ..+ +.....++.++.+.+.-.+++.-+
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 678888866543322 211 114567889988888777776543
No 281
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0024 Score=60.74 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=45.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
+..-+.++|++|+|||.||.++.+ .+...-..+.+ +++ .+++.++........ ....+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f--~~~------~el~~~Lk~~~~~~~---------~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLF--ITA------PDLLSKLKAAFDEGR---------LEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEE--EEH------HHHHHHHHHHHhcCc---------hHHHHHHH
Confidence 556899999999999999999999 55533334455 443 344555554444311 11222221
Q ss_pred cCCceEEEEEcCCCC
Q 010799 425 LYEKRYLVVLDDVHS 439 (501)
Q Consensus 425 l~~~r~LlVlDnv~~ 439 (501)
+. +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 21 224899999865
No 282
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.006 Score=60.27 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=46.2
Q ss_pred eEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799 429 RYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 429 r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
+-++|+|+++. ....+.++..+.. ...++.+|++|.+.. +...+.+.-..+.+.+++.+++.+.+.+
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEe--p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEE--PPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHh--CcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 44556688875 4556677777766 455677888887754 4434333456889999999999887764
No 283
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.0012 Score=61.64 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.3
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcC
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVP 195 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs 195 (501)
-.++|+|..|.|||||...+.. .....|.+..+++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 3678999999999999999884 466789777666543
No 284
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.10 E-value=0.0056 Score=58.72 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=86.4
Q ss_pred cccccch---hhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHH
Q 010799 133 TGILDLN---KEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELV 204 (501)
Q Consensus 133 ~~~vg~~---~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~ 204 (501)
+..+|.. +..+.|.++|... ....+-+.|||-+|.|||+++++....+-.... --.++-|..+..++...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4456643 3345566666543 235677899999999999999988754322111 1156677788999999999
Q ss_pred HHHHHHhcCCCCcCc--chHHHHHHHHccC-CeEEEEEecCCCh--------hHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 205 TDILKQVGGSKVEKQ--LDPQKKLRKLFTE-NRYLVVIINARTP--------DIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 205 ~~i~~~~~~~~~~~~--~~~~~~l~~~l~~-kr~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
..|+.+++.+..... ..........|+. +-=+||+|++.+. ...-.+...+.+.-.=+-|.|-|+..
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 999999998765432 2233444455544 3348999998652 11223333444444445555655543
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.10 E-value=0.003 Score=61.25 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=50.9
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEE
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLV 237 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 237 (501)
-+.++|.+|+||||+|+.+..--.-.......-|+.++. .++ +..+.+.. .......+.+. ..-+|
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~---~~~~~~~~~~a---~~gvL 125 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT---APKTKEILKRA---MGGVL 125 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc---hHHHHHHHHHc---cCcEE
Confidence 577899999999999976653211111111123454442 222 22222211 11122222222 23588
Q ss_pred EEecCCC-----------hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 238 VIINART-----------PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 238 VlDdv~~-----------~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
+||++.. .+.++.|...+.....+.+||.++...
T Consensus 126 ~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 126 FIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred EEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 8999852 223455566665555566777776544
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.10 E-value=0.0085 Score=59.41 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=94.9
Q ss_pred cchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccC----Ccc---ceeEEEEeCCCCChHHHHHHH
Q 010799 328 MENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPC---RAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 328 R~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~---~~w~~v~~~~~~~~~~~~~~i 399 (501)
|+...+.|.+.|.+.+ ..+.+|+|.|.=|+|||++.+.+.. ..... +.. -.| -+...+.-...++.++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w--~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAW--EYDGEDDLWASFLEEL 76 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccc--cCCCcchHHHHHHHHH
Confidence 3455677888886643 6678999999999999999999887 33333 221 223 1112122233444444
Q ss_pred HHHhccCCCC-----------------------------------------------------------------CCCCH
Q 010799 400 LRQLTQDEVD-----------------------------------------------------------------EESSL 414 (501)
Q Consensus 400 ~~~l~~~~~~-----------------------------------------------------------------~~~~~ 414 (501)
..++...... .....
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T PF07693_consen 77 FDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEV 156 (325)
T ss_pred HHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHH
Confidence 4444322110 00011
Q ss_pred HHHHHHHHHhcC--CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC--------------
Q 010799 415 DDLESEFTGILY--EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP-------------- 476 (501)
Q Consensus 415 ~~~~~~l~~~l~--~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~-------------- 476 (501)
++....+.+.+. .+|.++++||++. .+...+++..+......++...|+..-.+.+......
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 123445555554 3689999999987 3333333333222212467877877765554443321
Q ss_pred ----CCcceeCCCCChHHHHHHHHHh
Q 010799 477 ----SIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 477 ----~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
....+.+++++..+-..+|...
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 2346888888888777776654
No 287
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.10 E-value=0.0021 Score=70.70 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=31.6
Q ss_pred eeecchhHHHHHHHhhcC--------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 325 VVSMENDILKLAKLTLNS--------SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~--------~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
-.|.++-++.+.+.+... ......|+|.|.+|+|||+|...+...
T Consensus 421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 345556666666555321 123468999999999999999998875
No 288
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.10 E-value=0.0036 Score=56.40 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=67.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccce-eEEEEeCCCCChHHHHH------HHHHHhccCCC-----CCCCCH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WANVYVSQDFDMRSVFA------DILRQLTQDEV-----DEESSL 414 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~~v~~~~~~~~~~~~~------~i~~~l~~~~~-----~~~~~~ 414 (501)
.+++|.|+.|+|||||.+.++. .... ..+.+ |+...+.. .+...... +++..++.... ...+.-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G--~~~~-~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAG--LLKP-SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCCC-CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 6999999999999999999887 3332 33333 32122211 11111111 13333333211 122333
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCC-CCEEEEEeCChHHHhhc
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPI-GSRVILITREAYVARSF 474 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~-~~~iIiTtR~~~~~~~~ 474 (501)
+...-.+.+.+...+-++++|+--. ......+...+... ... +..||++|.+......+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~-~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL-ARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHh
Confidence 4444556666667788999999754 23334444444331 122 67899999887765443
No 289
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.09 E-value=0.0086 Score=54.30 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc--------------------cccceeEEEEcCCCCCHHHH
Q 010799 144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK--------------------EYFQCRAWVPVPEELERREL 203 (501)
Q Consensus 144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~--------------------~~F~~~~wv~vs~~~~~~~l 203 (501)
.|.+.+..+. -...+-++|..|+||||+|+.+.+.-.-. .+.|.............+ -
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~-~ 80 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVD-Q 80 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHH-H
Confidence 3445554332 23678899999999999998775421111 122222211111112221 1
Q ss_pred HHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 204 VTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
++.+++.+.... ..+.+-++|+|++.. .+.++.|...+......+.+|++|++.
T Consensus 81 i~~i~~~~~~~~--------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 81 VRELVEFLSRTP--------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred HHHHHHHHccCc--------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 122222222110 124566888999854 445777777776655567777777643
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.09 E-value=0.0018 Score=56.51 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=63.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhcc-----CCCCCCCCH------
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQ-----DEVDEESSL------ 414 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------ 414 (501)
..|.|++..|.|||++|...+. +.-.+=..+.+ -.+...........+..+- .+.. .......+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4788999999999999988766 33333222232 0022222333333333330 0000 000000111
Q ss_pred -HHHHHHHHHhcCCce-EEEEEcCCCCh-----hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 415 -DDLESEFTGILYEKR-YLVVLDDVHSP-----GAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 415 -~~~~~~l~~~l~~~r-~LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
.......++.+.... =|+|||++-.. -+.+.+...+.. ...+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--CCCCCEEEEECCCCC
Confidence 123344455554444 49999998652 334566677766 677899999999853
No 291
>PRK07261 topology modulation protein; Provisional
Probab=97.07 E-value=0.0015 Score=58.35 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=24.0
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccc-cccceeEE
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAW 191 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~w 191 (501)
.|.|+|++|+||||||+.+.....+. -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999987432221 13455555
No 292
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.017 Score=56.69 Aligned_cols=154 Identities=8% Similarity=0.097 Sum_probs=89.3
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC--cc-c----eeEEEEeCCCCChHHHHHHHHHHh
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF--PC-R----AWANVYVSQDFDMRSVFADILRQL 403 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f--~~-~----~w~~v~~~~~~~~~~~~~~i~~~l 403 (501)
..+.|.+.+.. +.-++...+.|+.|+||+++|..++...-..+.- .| . .+ +.....+|+..+
T Consensus 11 ~~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~--~~~g~HPD~~~i-------- 79 (319)
T PRK06090 11 VWQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCEL--MQSGNHPDLHVI-------- 79 (319)
T ss_pred HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHH--HHcCCCCCEEEE--------
Confidence 34555555533 2334689999999999999999986632111110 00 0 01 111111111100
Q ss_pred ccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcC
Q 010799 404 TQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFS 475 (501)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~ 475 (501)
...........+++. .+.+++. +..-++|+|+++. ....+.|+..+-. .+.++..|++|.+. .+...+.
T Consensus 80 ~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHH
Confidence 000000112333332 3334432 3355889999986 4667889999988 77778777776654 4555555
Q ss_pred CCCcceeCCCCChHHHHHHHHHh
Q 010799 476 PSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 476 ~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.-..+.+.+++.+++.+.+.+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHc
Confidence 56678999999999999888654
No 293
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0018 Score=68.48 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred cceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCCh
Q 010799 323 TAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDM 392 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~ 392 (501)
+++-|-++-..++.+-+.- +-.+..-|.+||++|+|||-||++++. ..+-.| +++..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~F-------lSVKGP--- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLNF-------LSVKGP--- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceeeE-------EeecCH---
Confidence 5677888888888766532 112345799999999999999999998 444333 676554
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 393 RSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 393 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
++++..-+. +++...+-+.+.-...+|+|+||++++
T Consensus 740 -----ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 -----ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -----HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 333333322 344455555555556899999999987
No 294
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.06 E-value=0.0028 Score=66.88 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=85.3
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
...++|+...+.++.+.+..-......|.|+|..|+||+.+|+.+.+.. ...-...+. ++|..-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~--v~c~~~~~--~~~e~--- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVY--LNCAALPE--SLAES--- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEE--EEcccCCh--HHHHH---
Confidence 4569999999999999886655556789999999999999999987732 111122344 66654332 22221
Q ss_pred HhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH
Q 010799 402 QLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY 469 (501)
Q Consensus 402 ~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~ 469 (501)
.+.+..... ..........+ + ..+ .=.|+||+++. ...+..|...+.... .....+||.||....
T Consensus 257 ~lfG~~~g~~~ga~~~~~g~~-~-~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l 333 (509)
T PRK05022 257 ELFGHVKGAFTGAISNRSGKF-E-LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333 (509)
T ss_pred HhcCccccccCCCcccCCcch-h-hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH
Confidence 221111100 00000000011 1 112 22468999987 455666776665410 012458888876442
Q ss_pred HHhh----cCC------CCcceeCCCCCh
Q 010799 470 VARS----FSP------SIFLHQLRPLNE 488 (501)
Q Consensus 470 ~~~~----~~~------~~~~~~l~~L~~ 488 (501)
.... +.. ....+.++||.+
T Consensus 334 ~~~~~~~~f~~dL~~rl~~~~i~lPpLre 362 (509)
T PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRE 362 (509)
T ss_pred HHHHHcCCccHHHHhcccccEeeCCCchh
Confidence 1110 110 245688999986
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0044 Score=65.38 Aligned_cols=46 Identities=9% Similarity=-0.093 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887543 235677899999999999998864
No 296
>PRK08727 hypothetical protein; Validated
Probab=97.04 E-value=0.0021 Score=60.45 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=25.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV 194 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v 194 (501)
..+.|+|..|+|||.|++.+++. ..++.....+++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 45899999999999999999863 2233334455553
No 297
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.02 E-value=0.0019 Score=63.43 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++.++|||++|+|||.+|+.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0056 Score=63.45 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=36.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 4678999999988888887553 234678999999999999988753
No 299
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0058 Score=61.78 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=38.1
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+...+.+.+.+..+. -.+.+-++|.+|+||||+|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997542 345788999999999999998864
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.00 E-value=0.0042 Score=58.52 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---- 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---- 408 (501)
..|.+.|..+=+...++.|+|.+|+|||+++.+++.. ... +=..++| ++..+ +...+..++ ..++....
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y--~~~e~--~~~~~~~~~-~~~g~~~~~~~~ 84 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYV--ITTEN--TSKSYLKQM-ESVKIDISDFFL 84 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEE--EEcCC--CHHHHHHHH-HHCCCChhHHHh
Confidence 4455555444456689999999999999999998652 122 2334566 66643 344444432 22221110
Q ss_pred ---------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 409 ---------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 409 ---------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
....+.+.+...+.+.+.. +.-++|+|.+.. ......+...+... ...+..+++|+.
T Consensus 85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l-~~~g~tvllt~~ 163 (234)
T PRK06067 85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNL-VDLGKTILITLH 163 (234)
T ss_pred CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHH-HhCCCEEEEEec
Confidence 0112345677777777764 556899999752 22222332222210 123567788776
Q ss_pred Ch
Q 010799 467 EA 468 (501)
Q Consensus 467 ~~ 468 (501)
..
T Consensus 164 ~~ 165 (234)
T PRK06067 164 PY 165 (234)
T ss_pred CC
Confidence 43
No 301
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0029 Score=67.81 Aligned_cols=131 Identities=9% Similarity=0.034 Sum_probs=72.0
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
-.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....+ .-...++.-...+.|....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCC
Confidence 4679999999999998887642 23456789999999999999887432111000 0011222222333333222
Q ss_pred cCCC---C---cCcchHHHHHHHH-----ccCCeEEEEEecCC--ChhHHHHHhhcCCCCCCCcEEEEEec
Q 010799 212 GGSK---V---EKQLDPQKKLRKL-----FTENRYLVVIINAR--TPDIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 212 ~~~~---~---~~~~~~~~~l~~~-----l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
+.+. + ....+....+.+. ..+++-++|+|++. +.+..+.|...+......+.+|++|.
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 2110 0 0000111122221 12456689999985 45557777766665555666766664
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.99 E-value=0.003 Score=64.28 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=62.1
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCC-CHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEEL-ERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
++.|.|+-++|||||++.+... ..+. .+.+...+.. +..++ .+. ...+.+.-..++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~---------------~~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDL---------------LRAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHH---------------HHHHHHhhccCCce
Confidence 9999999999999999766632 1111 4444332221 11111 111 11112221227889
Q ss_pred EEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 237 VVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 237 lVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
|+||.|.....|+.....+.+..+. +|++|+-+..+-.
T Consensus 98 ifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 98 IFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred EEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 9999999999999888888877666 8999998877654
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.002 Score=56.96 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=63.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
.+++|.|+.|+|||||.+.++. ... ...+.++ +.-... .+..+.. ......- . +.+.-+...-.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G--~~~-~~~G~v~--~~g~~~~~~~~~~~~---~~~i~~~-~-qLS~G~~qrl~lara 96 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSG--LYK-PDSGEIL--VDGKEVSFASPRDAR---RAGIAMV-Y-QLSVGERQMVEIARA 96 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCC-CCCeEEE--ECCEECCcCCHHHHH---hcCeEEE-E-ecCHHHHHHHHHHHH
Confidence 5999999999999999999887 322 2344444 221111 1111110 0111110 0 122333444555566
Q ss_pred cCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 425 LYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 425 l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
+-..+-++++|+--+ ......+...+... ...+..||++|.+......+
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence 666778899999754 22233344433331 12377899999987755443
No 304
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.98 E-value=0.002 Score=61.44 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=60.0
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD 409 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 409 (501)
.|.++|..+=....+.=|+|++|+|||+|+..++-....... =..++| ++....++..++ .++++........
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvy--idTe~~f~~~Rl-~~i~~~~~~~~~~ 102 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVY--IDTEGTFSPERL-QQIAERFGLDPEE 102 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEE--EESSSSS-HHHH-HHHHHHTTS-HHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEE--EeCCCCCCHHHH-HHHhhccccccch
Confidence 455555333334469999999999999999887653222222 234788 988887877665 4566654332111
Q ss_pred --------CCCCHHHHHH---HHHHhcC-CceEEEEEcCCCC
Q 010799 410 --------EESSLDDLES---EFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 --------~~~~~~~~~~---~l~~~l~-~~r~LlVlDnv~~ 439 (501)
...+.+++.. .+...+. ++--|||+|.+-.
T Consensus 103 ~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 103 ILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred hhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence 1233444433 3333333 3445999999754
No 305
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.98 E-value=0.00063 Score=67.07 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=39.2
Q ss_pred ceeecchhHHHHHHHhhcC----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 324 AVVSMENDILKLAKLTLNS----SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~~----~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
+++|.++.++++.+++... ....+++.|.|++|+||||||..+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999988542 335589999999999999999998874
No 306
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.98 E-value=0.0069 Score=62.68 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=30.0
Q ss_pred ecchhHHHHHHHhhcC------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 327 SMENDILKLAKLTLNS------SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~------~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
|-++.++.+.+.+... ....-.+++.|.+|+|||+|+..+...
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~ 195 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE 195 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC
Confidence 4556666666665321 122346899999999999999998764
No 307
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.97 E-value=0.005 Score=65.10 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=37.8
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+|....+.++.+.+..-......|.|+|..|+||+.+|+.+..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 456799999999888877743233345688999999999999999654
No 308
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.96 E-value=0.0037 Score=63.80 Aligned_cols=169 Identities=17% Similarity=0.251 Sum_probs=97.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCChhH--HHHHhhcCCCCCCCcEEEEE
Q 010799 190 AWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDI--WDILKYLFPNSSNGSRVILS 267 (501)
Q Consensus 190 ~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivT 267 (501)
+|| |.+..+...++..+++..+.....-. -.....+.+....+=+||-|+|-.+. .+ +...+....++..||+.
T Consensus 7 iLv-VDDd~~ir~~l~~~L~~~G~~v~~a~--~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~-ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 7 ILV-VDDDPDIRELLEQALELAGYEVVTAE--SAEEALEALSESPFDLVLLDIRMPGMDGLE-LLKEIKSRDPDLPVIVM 82 (464)
T ss_pred EEE-EeCCHHHHHHHHHHHHHcCCeEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHH-HHHHHHhhCCCCCEEEE
Confidence 444 55666888888888888774322211 13444555555578888888885322 22 22222333467889999
Q ss_pred eccccchhc---ccCCCCCCCcccCcce---e----eeccccCCCCCCCCCCCCCCCCccccccccceeecchhHHHHHH
Q 010799 268 FQEADAARC---RNMSFFGGESSFKPKY---I----AYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAK 337 (501)
Q Consensus 268 tr~~~va~~---~~~~~l~~~~~~~~~~---~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~ 337 (501)
|-.-++... .+.+-+ +|.-+|.. + ..+..........++ ..+ ........++|+...++++.+
T Consensus 83 Tg~g~i~~AV~A~k~GA~--Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~---~~~--~~~~~~~~liG~S~am~~l~~ 155 (464)
T COG2204 83 TGHGDIDTAVEALRLGAF--DFLEKPFDLDRLLAIVERALELRELQRENRR---SLK--RAKSLGGELVGESPAMQQLRR 155 (464)
T ss_pred eCCCCHHHHHHHHhcCcc--eeeeCCCCHHHHHHHHHHHHHHhhhhhhhhh---hhh--ccccccCCceecCHHHHHHHH
Confidence 988887653 332221 22222221 1 011110000000000 000 001234679999999999999
Q ss_pred HhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 338 LTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 338 ~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.+..-......|.|+|.+|+||..+|+.+...
T Consensus 156 ~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~ 187 (464)
T COG2204 156 LIAKVAPSDASVLITGESGTGKELVARAIHQA 187 (464)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh
Confidence 98665555578999999999999999998764
No 309
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.96 E-value=0.0076 Score=55.88 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred ccceeecchhHHH---HHHHhhcC----CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHH
Q 010799 322 VTAVVSMENDILK---LAKLTLNS----SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRS 394 (501)
Q Consensus 322 ~~~fvGR~~~~~~---l~~~L~~~----~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~ 394 (501)
.++++|.++...+ |.+.|.++ .=.++.|..+|++|.|||.+|+.+++ ...-.| +.+...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~-------l~vkat----- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL-------LLVKAT----- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce-------EEechH-----
Confidence 3678998876654 34555442 12357999999999999999999999 443333 333211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--------------hhhHHHHHHhcCCCCCCCCC
Q 010799 395 VFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--------------PGAWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--------------~~~~~~l~~~l~~~~~~~~~ 459 (501)
+++...-++. ...+..+-+.- +.-+|++++|.++. .+..++|+..+...-.+.|.
T Consensus 186 ---~liGehVGdg-------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 186 ---ELIGEHVGDG-------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ---HHHHHHhhhH-------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 1111111111 11122222222 23589999999875 23345565555443234555
Q ss_pred EEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799 460 RVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 460 ~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
..|-.|-+.. +.....+ ...-++....+++|-.+++...+.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 5555554443 2223322 345777888889998888877653
No 310
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0059 Score=67.46 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=37.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..++.|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998653 224578999999999999988854
No 311
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.95 E-value=0.0025 Score=60.02 Aligned_cols=24 Identities=13% Similarity=-0.123 Sum_probs=21.0
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
...+.|+|++|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998864
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.94 E-value=0.0041 Score=58.76 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---- 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---- 408 (501)
..|.++|..+=+.-.++.|.|++|+|||++|.++.. ..-..-..++| ++.. .+...+.+.+. .++.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~ly--vs~e--e~~~~i~~~~~-~~g~~~~~~~~ 80 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIY--VALE--EHPVQVRRNMA-QFGWDVRKYEE 80 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEE--EEee--CCHHHHHHHHH-HhCCCHHHHhh
Confidence 345555544445568999999999999999998766 22222344566 5543 34444444332 2211100
Q ss_pred -------------------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh---------hhHHHHHHhcCCC
Q 010799 409 -------------------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP---------GAWYDLKRIFSPQ 453 (501)
Q Consensus 409 -------------------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~---------~~~~~l~~~l~~~ 453 (501)
....+.++....+.+.+.. +.-++|+|.+... .....+...+.
T Consensus 81 ~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk-- 158 (237)
T TIGR03877 81 EGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLS-- 158 (237)
T ss_pred cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHH--
Confidence 0123556667777766644 3447999997651 11122333332
Q ss_pred CCCCCCEEEEEeC
Q 010799 454 ASPIGSRVILITR 466 (501)
Q Consensus 454 ~~~~~~~iIiTtR 466 (501)
..|+.+|+|+.
T Consensus 159 --~~~~t~llt~~ 169 (237)
T TIGR03877 159 --GLGCTSIFVSQ 169 (237)
T ss_pred --hCCCEEEEEEC
Confidence 45788888865
No 313
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0052 Score=66.35 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=70.8
Q ss_pred cceeecchhHHHHHHHhhc-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLN-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|.++.+..+.+.+.. ++....+....||.|||||.||+.++. ..-+.-...+- .+|++-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR--------~DMSEy 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIR--------IDMSEY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCcccee--------echHHH
Confidence 4689999999999888743 222335788899999999999999887 33221122222 233332
Q ss_pred HH-HHHHHhccCCCCC-CCCHHHHHHHHHHhcCCceE-EEEEcCCCC--hhhHHHHHHhcCC
Q 010799 396 FA-DILRQLTQDEVDE-ESSLDDLESEFTGILYEKRY-LVVLDDVHS--PGAWYDLKRIFSP 452 (501)
Q Consensus 396 ~~-~i~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~-LlVlDnv~~--~~~~~~l~~~l~~ 452 (501)
.. .-...|-+..+.. ..+ + -..|-+..+.++| +|.||+++. ++.++-|+..|..
T Consensus 561 ~EkHsVSrLIGaPPGYVGye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHhCCCCCCceec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22 1222333322221 111 1 3445566667777 888999985 6777777776655
No 314
>PRK09087 hypothetical protein; Validated
Probab=96.92 E-value=0.0024 Score=59.68 Aligned_cols=24 Identities=17% Similarity=-0.165 Sum_probs=21.0
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-+.+.|+|..|+|||+|++..++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999988854
No 315
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.91 E-value=0.011 Score=52.40 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E---EE-EeCCCCCh--HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A---NV-YVSQDFDM--RSVFADILRQLTQDEVDEESSLDDLES 419 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~---~v-~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 419 (501)
.+++|.|+.|+|||||++.++.- .... .+.++ + .+ .+.+...+ ..+...+... .....+.-+...-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~--~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv 100 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL--WPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRL 100 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHH
Confidence 59999999999999999998873 2221 22111 0 01 12222211 1233333211 1112334444555
Q ss_pred HHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799 420 EFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVAR 472 (501)
Q Consensus 420 ~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~ 472 (501)
.+.+.+..++-++++|+--+ ......+...+.. . +..+|++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~--~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--L--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH--h--CCEEEEEeCChhHHh
Confidence 56666667778889999654 2334445455544 2 467888998876654
No 316
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.011 Score=55.62 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=72.7
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++-|-+..++++.+...-+ -..+.-|.+||.+|.|||-||+++++ +.+..|-.+.=
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATFlRvvG--------- 252 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATFLRVVG--------- 252 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhhhhhhh---------
Confidence 456788899999887765321 23456788999999999999999999 77777743222
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
.++.....+..+ .+...+.+.-. +-+-++++|+++.. ...-+|+..+.-+
T Consensus 253 ------seLiQkylGdGp-------klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGF 319 (440)
T KOG0726|consen 253 ------SELIQKYLGDGP-------KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 319 (440)
T ss_pred ------HHHHHHHhccch-------HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCc
Confidence 122222222221 23444444443 34778888887641 1223455555553
Q ss_pred CCCCCCEEEEEeC
Q 010799 454 ASPIGSRVILITR 466 (501)
Q Consensus 454 ~~~~~~~iIiTtR 466 (501)
......+||..|.
T Consensus 320 dsrgDvKvimATn 332 (440)
T KOG0726|consen 320 DSRGDVKVIMATN 332 (440)
T ss_pred cccCCeEEEEecc
Confidence 2333457777553
No 317
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.89 E-value=0.015 Score=55.75 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=64.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-------CCCCHHHH
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-------EESSLDDL 417 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~ 417 (501)
....++|.|++|+|||||.+.++. .+... .+.++ +.-..-. ..+...+++.....-... ...+....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i~--~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQLG--LRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceEE--ECCEEee-cchhHHHHHHHhcccccccccccccccccchHH
Confidence 346899999999999999999988 44433 33333 2211100 011112333222111000 00111111
Q ss_pred HHHHHHhcC-CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 418 ESEFTGILY-EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 418 ~~~l~~~l~-~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
..+...+. ..+-++++|++...+.+..+...+.. |..+|+||.+..+...
T Consensus 184 -~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~-----G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 184 -EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHA-----GVSIIATAHGRDVEDL 234 (270)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhC-----CCEEEEEechhHHHHH
Confidence 12233332 46889999999887766666665433 7889999997766443
No 318
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.89 E-value=0.0036 Score=57.00 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=37.1
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...++||-++-+++|.-...+ .+.+-+.|.||||+||||-+..+++
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHH
Confidence 347899999999988766644 4568899999999999997776666
No 319
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.88 E-value=0.011 Score=61.35 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHcc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.-.|+|.|.+|+|||||...+...
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGE 196 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998754
No 320
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0025 Score=56.87 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 321
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.87 E-value=0.003 Score=63.41 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
+..|.+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++| ++.. .+...+. .-+..++.....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlY--vs~E--Es~~qi~-~Ra~rlg~~~~~l~ 140 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLY--VSGE--ESPEQIK-LRADRLGISTENLY 140 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEE--EECC--cCHHHHH-HHHHHcCCCcccEE
Confidence 4455555544334457999999999999999999887 33333345566 6543 2333322 223334332211
Q ss_pred --CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
...+.+.+.+.+. ..+.-++|+|.+..
T Consensus 141 l~~e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 141 LLAETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred EEccCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 1234444444443 23567899999854
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0091 Score=63.72 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=38.0
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..++.|.+.+..+. -..-+-++|..|+||||+|+.+.+
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987653 234577899999999999998864
No 323
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.012 Score=58.70 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.++|+|+|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988876
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.012 Score=54.77 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=71.3
Q ss_pred cceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 323 TAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
.++-|=.+++++|.+.... +-+.+.-|.++|++|.|||-+|+.+++ +....| +.+-..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-------irvigs-- 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-------IRVIGS-- 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-------EeehhH--
Confidence 4466777888888765432 124557899999999999999999999 555544 444221
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
++ ....-+.. ......+.+.-+. +-|+|+||+++.. ...-++...|.-+.
T Consensus 246 --el----vqkyvgeg-------armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd 312 (435)
T KOG0729|consen 246 --EL----VQKYVGEG-------ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 312 (435)
T ss_pred --HH----HHHHhhhh-------HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC
Confidence 11 11111111 1233444444444 4689999998641 11234445555521
Q ss_pred CCCCCEEEEEeCChH
Q 010799 455 SPIGSRVILITREAY 469 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~ 469 (501)
...+.+|++.|-.+.
T Consensus 313 prgnikvlmatnrpd 327 (435)
T KOG0729|consen 313 PRGNIKVLMATNRPD 327 (435)
T ss_pred CCCCeEEEeecCCCC
Confidence 223467787765443
No 325
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.018 Score=60.86 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=41.5
Q ss_pred cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhccccccccc
Q 010799 133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF 186 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F 186 (501)
.+-.|.++.++++++.|.- ..-+-++++.||++|||||+|++.|.. ...+.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 5668999999999999973 223447999999999999999999983 444445
No 326
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.84 E-value=0.019 Score=53.81 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-----
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE----- 407 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~----- 407 (501)
..|.+.|..+=..-.++.|.|++|+|||+++..++.+ ....-..++| ++... +...+... +..+....
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~--is~e~--~~~~i~~~-~~~~g~~~~~~~~ 79 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIY--VTTEE--SRESIIRQ-AAQFGMDFEKAIE 79 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEE--EEccC--CHHHHHHH-HHHhCCCHHHHhh
Confidence 3444555333345579999999999999999987652 2222345667 66532 22333222 22111100
Q ss_pred ------------------CCCCCCHHHHHHHHHHhcCC---ceEEEEEcCCCCh-----hhHH----HHHHhcCCCCCCC
Q 010799 408 ------------------VDEESSLDDLESEFTGILYE---KRYLVVLDDVHSP-----GAWY----DLKRIFSPQASPI 457 (501)
Q Consensus 408 ------------------~~~~~~~~~~~~~l~~~l~~---~r~LlVlDnv~~~-----~~~~----~l~~~l~~~~~~~ 457 (501)
.....+.+++...+.+.+.. +.-++|+|.+... .... .+...+. ..
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~----~~ 155 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN----RW 155 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH----hC
Confidence 00123566777777766643 3457889997642 1111 2222222 35
Q ss_pred CCEEEEEeCC
Q 010799 458 GSRVILITRE 467 (501)
Q Consensus 458 ~~~iIiTtR~ 467 (501)
++.+|+|+..
T Consensus 156 ~~tvil~~~~ 165 (229)
T TIGR03881 156 NFTILLTSQY 165 (229)
T ss_pred CCEEEEEecc
Confidence 8889999863
No 327
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.84 E-value=0.0012 Score=68.50 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=40.1
Q ss_pred ccceeecchhHHHHHHHh----hcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLT----LNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L----~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.+++|.++.++++.+.| .....+.+++.+.||+|+|||+||+.+++
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 456899999999999988 33345668999999999999999999876
No 328
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.84 E-value=0.0049 Score=62.69 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=37.5
Q ss_pred ccccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++.|++..+++|.+.+.. . -...+-|.++|.+|+|||+||+.+.+.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 35788999999999887642 1 123456888999999999999999863
No 329
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0041 Score=53.47 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.|.|+|++|+||||++..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4689999999999999999987
No 330
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0073 Score=60.60 Aligned_cols=113 Identities=11% Similarity=0.087 Sum_probs=73.5
Q ss_pred cccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799 131 KKTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL 208 (501)
Q Consensus 131 ~~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~ 208 (501)
.+..++||+.++..+.+|+... ....+-+-|.|.+|.|||.+...++.+..-...=-+.+.+.-..--....+...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 4577999999999999999753 23455677899999999999999986532211111223332222234566777777
Q ss_pred HHhc--CCCCcCcchHHHHHHHHccCCe--EEEEEecCC
Q 010799 209 KQVG--GSKVEKQLDPQKKLRKLFTENR--YLVVIINAR 243 (501)
Q Consensus 209 ~~~~--~~~~~~~~~~~~~l~~~l~~kr--~LlVlDdv~ 243 (501)
..+. ........+.+..+.++..+.+ ||+|||...
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 7662 2222233556777777776644 889999874
No 331
>PRK12377 putative replication protein; Provisional
Probab=96.81 E-value=0.0038 Score=59.03 Aligned_cols=73 Identities=8% Similarity=-0.050 Sum_probs=44.1
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
...+.++|.+|+|||+||..+.+... ...-.++++++ .+++..+-...... . . ...+.+.+ .+--
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~------~~l~~~l~~~~~~~--~---~-~~~~l~~l-~~~d 165 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTV------PDVMSRLHESYDNG--Q---S-GEKFLQEL-CKVD 165 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEH------HHHHHHHHHHHhcc--c---h-HHHHHHHh-cCCC
Confidence 45788999999999999999997433 33333455544 35555554443211 0 1 11222333 3456
Q ss_pred EEEEecCC
Q 010799 236 LVVIINAR 243 (501)
Q Consensus 236 LlVlDdv~ 243 (501)
||||||+-
T Consensus 166 LLiIDDlg 173 (248)
T PRK12377 166 LLVLDEIG 173 (248)
T ss_pred EEEEcCCC
Confidence 99999993
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.81 E-value=0.01 Score=53.18 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=59.2
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEE--EE-eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWAN--VY-VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~--v~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
.+++|.|+.|+|||||.+.+.. .....-..+.|+. +. +.+... .+.-+...-.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG--QLIPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc--CCCCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHH
Confidence 5999999999999999999887 3222222222311 11 111111 1222333444555
Q ss_pred hcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCC-CCEEEEEeCChHHHhhc
Q 010799 424 ILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPI-GSRVILITREAYVARSF 474 (501)
Q Consensus 424 ~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~-~~~iIiTtR~~~~~~~~ 474 (501)
.+..++-++++|+--. ......+...+... ... +..||++|.+......+
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL-SEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHHh
Confidence 5666778999999754 22223333333321 112 36788999887766544
No 333
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.015 Score=53.25 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHhcCCceEEEEEcCCCChhhH---HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799 418 ESEFTGILYEKRYLVVLDDVHSPGAW---YDLKRIFSPQASPIGSRVILITREAYVARSFSP 476 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~~~~~---~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~ 476 (501)
...+.+.+.-++-+.|||+.++--+. ..+...+... ..+++.+|+.|..+.+.....+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l-r~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL-REEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH-hcCCCeEEEEecHHHHHhhcCC
Confidence 34444555556789999999984333 3333333332 3458888999999998888763
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.80 E-value=0.0063 Score=60.28 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=60.2
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD- 409 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~- 409 (501)
|.++|..+=..-+++-|+|++|+|||+|+..++-..+.... -..++| ++....++..++.+ ++..++.....
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvy--IdTE~tF~peRl~~-ia~~~g~d~~~~ 191 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAY--IDTEGTFRPDRIVP-IAERFGMDADAV 191 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEE--EEcCCCCCHHHHHH-HHHHcCCChhhh
Confidence 33445433345578889999999999999888642222111 245788 88887777776544 55555443211
Q ss_pred -------CCCCHHHHHHH---HHHhcCC-ceEEEEEcCCCC
Q 010799 410 -------EESSLDDLESE---FTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 410 -------~~~~~~~~~~~---l~~~l~~-~r~LlVlDnv~~ 439 (501)
...+.++.... +...+.. +--|||+|.+..
T Consensus 192 l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 23344443333 3333433 345899999753
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=96.80 E-value=0.015 Score=57.49 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 420 EFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 420 ~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.+.+.+--++-+|++|+--+ ..+.-+|+..|.. ..+...|+.|.+-.+...++
T Consensus 436 AIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~---k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 436 AIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ---KHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred HHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH---HhCCeEEEEeccHHHHHHhh
Confidence 33444445677999999765 2444556666665 67888999999999888876
No 336
>PRK04328 hypothetical protein; Provisional
Probab=96.80 E-value=0.0077 Score=57.27 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=67.2
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC------
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE------ 407 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~------ 407 (501)
.|.++|..+=+.-.++.|.|++|+|||+|+.++... ....-...+| ++... +...+.+ .+..++.+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~ly--is~ee--~~~~i~~-~~~~~g~d~~~~~~~ 83 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVY--VALEE--HPVQVRR-NMRQFGWDVRKYEEE 83 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEE--EEeeC--CHHHHHH-HHHHcCCCHHHHhhc
Confidence 444555443345579999999999999999998762 2222344566 66533 3333322 222222110
Q ss_pred --------C---------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh---------hhHHHHHHhcCCCC
Q 010799 408 --------V---------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP---------GAWYDLKRIFSPQA 454 (501)
Q Consensus 408 --------~---------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~---------~~~~~l~~~l~~~~ 454 (501)
. ....+.++....+.+.+.. +.-++|+|.+... .....|...+.
T Consensus 84 ~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk--- 160 (249)
T PRK04328 84 GKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS--- 160 (249)
T ss_pred CCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH---
Confidence 0 0123455666666666654 3457999998531 11122333332
Q ss_pred CCCCCEEEEEeC
Q 010799 455 SPIGSRVILITR 466 (501)
Q Consensus 455 ~~~~~~iIiTtR 466 (501)
..++.+|+|+.
T Consensus 161 -~~g~t~llt~e 171 (249)
T PRK04328 161 -GLGCTAIFVSQ 171 (249)
T ss_pred -hCCCEEEEEEC
Confidence 45788888864
No 337
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0023 Score=60.93 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=47.7
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR 234 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr 234 (501)
+..-+.++|.+|+|||.||..+.|..- +..+.+. ++ ...++++++....... ....+|.+.+. +-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~-f~------~~~el~~~Lk~~~~~~------~~~~~l~~~l~-~~ 168 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVL-FI------TAPDLLSKLKAAFDEG------RLEEKLLRELK-KV 168 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEE-EE------EHHHHHHHHHHHHhcC------chHHHHHHHhh-cC
Confidence 455678999999999999999997554 4444443 33 4566777766665541 11233333332 22
Q ss_pred EEEEEecCCC
Q 010799 235 YLVVIINART 244 (501)
Q Consensus 235 ~LlVlDdv~~ 244 (501)
=||||||+-.
T Consensus 169 dlLIiDDlG~ 178 (254)
T COG1484 169 DLLIIDDIGY 178 (254)
T ss_pred CEEEEecccC
Confidence 3899999843
No 338
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.78 E-value=0.014 Score=52.42 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=62.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe-----------------CCCCChHHHHHHHHHHhccCCCC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV-----------------SQDFDMRSVFADILRQLTQDEVD 409 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~-----------------~~~~~~~~~~~~i~~~l~~~~~~ 409 (501)
.+++|.|+.|+|||||++.++.- ... ..+.++ +.- .+...+.. ..+.+.+ ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~--~~~-~~G~i~--~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i----~~ 97 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD--LKP-QQGEIT--LDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL----GR 97 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--CCC-CCCEEE--ECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh----cc
Confidence 58999999999999999998873 221 122222 111 11111000 0111111 00
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 410 EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 410 ~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
..+.-+...-.+.+.+-.++-++++|+..+ ....+.+...+.. ...+..||++|.+......
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~--~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE--VLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH--HcCCCEEEEEecCHHHHHh
Confidence 122223344445566667778999999765 2333444444444 2336789999988876653
No 339
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.01 Score=63.51 Aligned_cols=46 Identities=11% Similarity=-0.070 Sum_probs=36.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999887542 234477899999999999977754
No 340
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.014 Score=62.07 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=37.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997642 234567899999999999988864
No 341
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.77 E-value=0.0012 Score=55.13 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+|.|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 342
>PRK06526 transposase; Provisional
Probab=96.76 E-value=0.011 Score=56.23 Aligned_cols=73 Identities=11% Similarity=-0.037 Sum_probs=40.9
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
..-+.++|.+|+|||+||..+.+... ...+.+ .| ....+++..+...... ......+... .+.-
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v-~f------~t~~~l~~~l~~~~~~------~~~~~~l~~l--~~~d 161 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRV-LF------ATAAQWVARLAAAHHA------GRLQAELVKL--GRYP 161 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCch-hh------hhHHHHHHHHHHHHhc------CcHHHHHHHh--ccCC
Confidence 34578999999999999999875322 222322 22 2344555554433211 1122333332 2345
Q ss_pred EEEEecCCC
Q 010799 236 LVVIINART 244 (501)
Q Consensus 236 LlVlDdv~~ 244 (501)
||||||+..
T Consensus 162 lLIIDD~g~ 170 (254)
T PRK06526 162 LLIVDEVGY 170 (254)
T ss_pred EEEEccccc
Confidence 899999853
No 343
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.76 E-value=0.0062 Score=56.69 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=68.7
Q ss_pred cccc-hhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhccccccccc-c-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799 135 ILDL-NKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF-Q-CRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 135 ~vg~-~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
++|- .+..-...+.+... +.....+-|+|..|+|||.|.+.+++.- .+.. . .++++ +..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~--~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA--QKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH--HHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH--Hhccccccceee------cHHHHHHHHHHH
Confidence 4564 34444555555543 3334567899999999999999999642 2221 2 22333 567777777777
Q ss_pred hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC---hhHHHHHhhcCCC--CCCCcEEEEEecc
Q 010799 211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART---PDIWDILKYLFPN--SSNGSRVILSFQE 270 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~--~~~gs~iivTtr~ 270 (501)
+... ....+++.+++- =+|+|||+.. ...|......+-+ ...|-+||+|+..
T Consensus 83 ~~~~-------~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 83 LRDG-------EIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHTT-------SHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHcc-------cchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 6552 134555666543 3778999864 2334322221111 1346689998843
No 344
>PRK08181 transposase; Validated
Probab=96.76 E-value=0.0038 Score=59.78 Aligned_cols=71 Identities=8% Similarity=-0.078 Sum_probs=40.7
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
.-+.++|.+|+|||.||..+.+.. ....-...++ +..+++..+...... ..... +.+.+. +--|
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~------~~~~L~~~l~~a~~~------~~~~~-~l~~l~-~~dL 170 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFT------RTTDLVQKLQVARRE------LQLES-AIAKLD-KFDL 170 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeee------eHHHHHHHHHHHHhC------CcHHH-HHHHHh-cCCE
Confidence 348899999999999999998532 2222233444 345566555433211 11122 222232 2349
Q ss_pred EEEecCC
Q 010799 237 VVIINAR 243 (501)
Q Consensus 237 lVlDdv~ 243 (501)
|||||+-
T Consensus 171 LIIDDlg 177 (269)
T PRK08181 171 LILDDLA 177 (269)
T ss_pred EEEeccc
Confidence 9999984
No 345
>PRK05642 DNA replication initiation factor; Validated
Probab=96.75 E-value=0.0039 Score=58.71 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=50.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
...+.|+|..|+|||.|++.+.+.-. ..-...++++.. ++... ...+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~------~~~~~----------------~~~~~~~~~~~d- 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLA------ELLDR----------------GPELLDNLEQYE- 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHH------HHHhh----------------hHHHHHhhhhCC-
Confidence 35788999999999999999975321 111234555432 22221 012223333222
Q ss_pred EEEEecCCC---hhHHHH-HhhcCCC-CCCCcEEEEEeccc
Q 010799 236 LVVIINART---PDIWDI-LKYLFPN-SSNGSRVILSFQEA 271 (501)
Q Consensus 236 LlVlDdv~~---~~~~~~-l~~~~~~-~~~gs~iivTtr~~ 271 (501)
+|++||+.. ...|.. +...+.. ...|..||+|++..
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 678999952 345643 3333321 13466788888643
No 346
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.75 E-value=0.014 Score=53.83 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 411 ESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.+.-+...-.+.+.+-..+-+|+.|+--. ...+-.++..+.. ..|..||+.|.+..++..+.
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK---ERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHhCC
Confidence 44455666677778888888999998432 2223333333322 45889999999999999764
No 347
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0095 Score=57.03 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH-hccCCCCCCCC
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ-LTQDEVDEESS 413 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~ 413 (501)
|..+|..+=++-+++=|+|+.|+|||++|.+++- .....-..++| ++.-+.+++..+. +++.. +..-...+..+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~f--IDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~ 123 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAF--IDTEHALDPERAK-QLGVDLLDNLLVSQPDT 123 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEE--EeCCCCCCHHHHH-HHHHhhhcceeEecCCC
Confidence 3344444446668999999999999999999776 44555557889 9988888877653 33333 22222223344
Q ss_pred HHH---HHHHHHHhcCCceEEEEEcCCCC
Q 010799 414 LDD---LESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 414 ~~~---~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
.++ +.+.+......+--|+|+|.+-.
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 443 34444444444345999999864
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.74 E-value=0.018 Score=49.68 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=60.3
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
.+++|.|+.|+|||||++.+.. ... ...+.++ +.-.. .+. .-.+.+.-+...-.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G--~~~-~~~G~i~--~~~~~-------------~i~--~~~~lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAG--ELE-PDEGIVT--WGSTV-------------KIG--YFEQLSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcC--CCC-CCceEEE--ECCeE-------------EEE--EEccCCHHHHHHHHHHHHHh
Confidence 6999999999999999999877 222 2344444 21100 000 00001122233344555566
Q ss_pred CceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 427 EKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 427 ~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
.++-++++|+-.. ......+...+.. . +..||++|.+......+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~--~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKE--Y--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHH--c--CCEEEEEECCHHHHHHh
Confidence 6777999999754 3334455555544 2 35788899887766544
No 349
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.74 E-value=0.00058 Score=58.66 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred EEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEE
Q 010799 159 ISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLV 237 (501)
Q Consensus 159 i~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 237 (501)
|-++|.+|+|||+||+.+..- ++. ..-+.++...+..+++...--. .....-....+...++ +..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~------~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~-----~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL------LGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMR-----KGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH------HTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHH-----EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH------hhcceEEEEeccccccccceeeeeec-cccccccccccccccc-----ceeEE
Confidence 568999999999999999842 222 2345677778888776433222 1111101111111111 78899
Q ss_pred EEecCC--ChhHHHHHhhcC
Q 010799 238 VIINAR--TPDIWDILKYLF 255 (501)
Q Consensus 238 VlDdv~--~~~~~~~l~~~~ 255 (501)
|||++. +.+.+..|...+
T Consensus 70 ~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EESSCGG--HHHHHTTHHHH
T ss_pred EECCcccCCHHHHHHHHHHH
Confidence 999997 344455554444
No 350
>PRK06696 uridine kinase; Validated
Probab=96.73 E-value=0.0019 Score=60.33 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=34.9
Q ss_pred ecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 327 SMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 327 GR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|.+.+++|.+.+.. ..+++.+|+|.|.+|+||||||..+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 367778888888754 345678999999999999999999887
No 351
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.73 E-value=0.012 Score=55.69 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=73.6
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCC---------ccceeEEEEeCCCC-ChHHHHHHHHHHhccCCCC--------
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNF---------PCRAWANVYVSQDF-DMRSVFADILRQLTQDEVD-------- 409 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---------~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~~-------- 409 (501)
+..|+|+||+|||+||..++........| ...+| |+....+. .+..-+..+...+......
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vl-yi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVV-YLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEE-EEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 56789999999999999987632111111 22333 14433322 2333444444443211000
Q ss_pred --C-----C---CCHHHHHHHHHHhc-CCceEEEEEcCCC--------ChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799 410 --E-----E---SSLDDLESEFTGIL-YEKRYLVVLDDVH--------SPGAWYDLKRIFSPQASPIGSRVILITREAYV 470 (501)
Q Consensus 410 --~-----~---~~~~~~~~~l~~~l-~~~r~LlVlDnv~--------~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~ 470 (501)
. . ......+..+.+.+ ..+.-+||+|.+. +......+...+.......++.||+++...+-
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 0 0 01122333333333 3456799999763 22333344443332112347888888775532
Q ss_pred Hhh-------cC-------CCCcceeCCCCChHHHHH
Q 010799 471 ARS-------FS-------PSIFLHQLRPLNEEESGK 493 (501)
Q Consensus 471 ~~~-------~~-------~~~~~~~l~~L~~~ea~~ 493 (501)
... .. .....+.+.+++.+++.+
T Consensus 162 ~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 162 SAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred cccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 210 00 034578888899998877
No 352
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.012 Score=52.54 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=61.0
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhcc--CCCC--C-------CCC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQ--DEVD--E-------ESS 413 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~--~~~~--~-------~~~ 413 (501)
.+++|.|+.|+|||||.+.++. .... ..+.++ +.-... ..... ....+.. .... . .+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G--~~~~-~~G~i~--~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLR--LYDP-TSGEIL--IDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCC-CCCEEE--ECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence 6999999999999999999987 3222 233333 111000 00000 0000000 0000 0 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
-+...-.+...+..++-++++|+-.. ......+...+.. ...+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~--~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA--LAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH--hcCCCEEEEEecCHHHHHh
Confidence 22223345555666778999999764 2333444444444 2235789999998876654
No 353
>PRK13695 putative NTPase; Provisional
Probab=96.73 E-value=0.0035 Score=56.08 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCChhh-----HHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC---C--CCcceeCCCCChHHHHHHHH
Q 010799 428 KRYLVVLDDVHSPGA-----WYDLKRIFSPQASPIGSRVILITREAYVARSFS---P--SIFLHQLRPLNEEESGKLFQ 496 (501)
Q Consensus 428 ~r~LlVlDnv~~~~~-----~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~---~--~~~~~~l~~L~~~ea~~Lf~ 496 (501)
+.-+|++|+++..+. .+.+...+ . .+..+|+|+....+...+. . ...++.+.+-+.++-..-..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~----~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~ 169 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL-D----SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEIL 169 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH-h----CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHH
Confidence 455689998765222 23333333 3 3567888888765433221 1 56788888777776554333
No 354
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.72 E-value=0.0058 Score=60.66 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=63.9
Q ss_pred hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCC-CCHHHHHHHHHHHhcCCCCcC
Q 010799 141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEE-LERRELVTDILKQVGGSKVEK 218 (501)
Q Consensus 141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~-~~~~~l~~~i~~~~~~~~~~~ 218 (501)
-..++++.+..-..+ .-+.|+|.+|+|||||++.+.+.-.- .+=+. .+|+.+.+. -++.++++.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 344588888743222 35699999999999999998753211 12234 467777665 467888888887776543221
Q ss_pred --cch-----HHHHHHHHc--cCCeEEEEEecCCC
Q 010799 219 --QLD-----PQKKLRKLF--TENRYLVVIINART 244 (501)
Q Consensus 219 --~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 244 (501)
... ......+++ ++++.+||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111 111222222 58999999999854
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.71 E-value=0.0053 Score=58.72 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~ 388 (501)
..-.++.|+|++|+|||++|.+++.. ....-..+++ ++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vly--is~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLF--VTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEE--EEecC
Confidence 44579999999999999999998763 2122234566 66643
No 356
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.014 Score=61.43 Aligned_cols=128 Identities=22% Similarity=0.248 Sum_probs=70.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHH--
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESE-- 420 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 420 (501)
-...-|.|.|+.|+|||.||+++++ .+... .-.+.+ ++|+.-. ....+.+.+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~--v~Cs~l~--------------------~~~~e~iQk~l~ 484 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEI--VSCSTLD--------------------GSSLEKIQKFLN 484 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEE--Eechhcc--------------------chhHHHHHHHHH
Confidence 3446899999999999999999998 55432 222333 6664321 1112222222
Q ss_pred --HHHhcCCceEEEEEcCCCCh-------------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCC--
Q 010799 421 --FTGILYEKRYLVVLDDVHSP-------------------GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSP-- 476 (501)
Q Consensus 421 --l~~~l~~~r~LlVlDnv~~~-------------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~-- 476 (501)
+.+.+...+-+|||||++.. ..+..+...+.. .+...++|.|..... +...+.+
T Consensus 485 ~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~--~~~~ia~Iat~qe~qtl~~~L~s~~ 562 (952)
T KOG0735|consen 485 NVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK--RNRKIAVIATGQELQTLNPLLVSPL 562 (952)
T ss_pred HHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc--cCcEEEEEEechhhhhcChhhcCcc
Confidence 33334456889999998741 111122222222 233334555554433 2222221
Q ss_pred -CCcceeCCCCChHHHHHHHHH
Q 010799 477 -SIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 477 -~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
...+..++++...+-.++++.
T Consensus 563 ~Fq~~~~L~ap~~~~R~~IL~~ 584 (952)
T KOG0735|consen 563 LFQIVIALPAPAVTRRKEILTT 584 (952)
T ss_pred ceEEEEecCCcchhHHHHHHHH
Confidence 345788888888777766653
No 357
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.71 E-value=0.012 Score=60.76 Aligned_cols=75 Identities=9% Similarity=0.098 Sum_probs=47.0
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR 234 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr 234 (501)
..-+-|+|.+|+|||+|++.+.+.-. ..+.. ...|+ +..++...+...+.... ...+++.++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi------~~~~f~~~~~~~~~~~~-------~~~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYI------TSEKFLNDLVDSMKEGK-------LNEFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEE------EHHHHHHHHHHHHhccc-------HHHHHHHHHhcC
Confidence 34589999999999999999997422 22223 23444 34566667766664321 233444444445
Q ss_pred EEEEEecCCC
Q 010799 235 YLVVIINART 244 (501)
Q Consensus 235 ~LlVlDdv~~ 244 (501)
-+|+|||+..
T Consensus 196 dvLlIDDi~~ 205 (440)
T PRK14088 196 DVLLIDDVQF 205 (440)
T ss_pred CEEEEechhh
Confidence 5899999963
No 358
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.71 E-value=0.073 Score=52.14 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHhcCC--CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799 137 DLNKEVNKLADFLIRSH--SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGS 214 (501)
Q Consensus 137 g~~~~~~~l~~~L~~~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~ 214 (501)
++........+++..-. ...+-+-++|..|+|||.||..+.+... ...+. +.++++ ..++..+-..+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 34444444555555321 2345688999999999999999997533 33343 345544 35666665554321
Q ss_pred CCcCcchHHHHHHHHccCCeEEEEEecCC--ChhHHH--HHhhcC-CCC-CCCcEEEEEec
Q 010799 215 KVEKQLDPQKKLRKLFTENRYLVVIINAR--TPDIWD--ILKYLF-PNS-SNGSRVILSFQ 269 (501)
Q Consensus 215 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~--~l~~~~-~~~-~~gs~iivTtr 269 (501)
.....+. .++ +-=||||||+- ....|. .+...+ ... ..+-.+|+||-
T Consensus 207 ------~~~~~l~-~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ------SVKEKID-AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ------cHHHHHH-Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1222222 232 44589999985 345574 344433 222 23444677763
No 359
>PHA02244 ATPase-like protein
Probab=96.70 E-value=0.0094 Score=59.02 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=27.8
Q ss_pred eeecchhHH----HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 325 VVSMENDIL----KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 325 fvGR~~~~~----~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
|+|....+. .+..++.. ...|.|+|++|+|||+||+.++.
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHH
Confidence 555544443 34444422 24678899999999999999988
No 360
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.70 E-value=0.0093 Score=64.97 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=38.6
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.++|....+.++.+.+..-......|.|+|.+|+||+++|+.+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 56799999999998887754334445689999999999999999876
No 361
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.70 E-value=0.0072 Score=53.44 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=64.9
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccc-cCCccce--eEEEEeCCCCChHHHHHHHHHHhccC--CC---CCCCC-----
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRA--WANVYVSQDFDMRSVFADILRQLTQD--EV---DEESS----- 413 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~--w~~v~~~~~~~~~~~~~~i~~~l~~~--~~---~~~~~----- 413 (501)
..|.|++..|.||||.|...+. +.. ..+...+ | +...........+..+ .+... .. ....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQF--lKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQF--IKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEE--ecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 5888898899999999988765 332 2333211 3 3333223333444332 11110 00 00011
Q ss_pred --HHHHHHHHHHhcCCceE-EEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 414 --LDDLESEFTGILYEKRY-LVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 414 --~~~~~~~l~~~l~~~r~-LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
..+.....++.+...+| |+|||++.. .-+.+++...+.. .+++..+|+|.|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~--rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE--RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh--CCCCCEEEEECCCC
Confidence 22344555666655555 999999864 2233466666666 67789999999986
No 362
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.69 E-value=0.0057 Score=58.27 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=57.4
Q ss_pred eEEEEEeeCChhhHHHHhhhhccccccccc-ceeEEEEcCCCCC-HHHHHHHHHHHhcCC--------CCcCc-ch----
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYF-QCRAWVPVPEELE-RRELVTDILKQVGGS--------KVEKQ-LD---- 221 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~~~~wv~vs~~~~-~~~l~~~i~~~~~~~--------~~~~~-~~---- 221 (501)
.-++|.|-+|+|||||++.+++. ++.+| +.++++.+.+... ..++.+++...-... .+++. ..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999964 44445 5566777776654 456666665431111 01100 00
Q ss_pred -HHHHHHHHc---cCCeEEEEEecCCCh-hHHHHHh
Q 010799 222 -PQKKLRKLF---TENRYLVVIINARTP-DIWDILK 252 (501)
Q Consensus 222 -~~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~ 252 (501)
..-.+.+++ +++..|+++||+... ..+.++.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 122344555 389999999998652 3344444
No 363
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.68 E-value=0.017 Score=60.78 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=39.6
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++|....+.++.+.+..-......|.|.|.+|+||+.+|+.+++
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence 46699999999999888854344457899999999999999999876
No 364
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.014 Score=53.89 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 413 SLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.-+...-.+.+.|.-++-+||+|+.-+. .....+...|.......+..+|+.|.+-.+...++
T Consensus 144 GGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 3344445566677777889999997652 11122222222211255778999999988777665
No 365
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.68 E-value=0.017 Score=51.68 Aligned_cols=114 Identities=23% Similarity=0.260 Sum_probs=62.2
Q ss_pred eEEEEEecCCCChHHHHHHHHccc-cc--ccC---Cc--cceeEEEEeCCCCChHHHHHHHHHHhccCCC-C-----CCC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESS-YT--KKN---FP--CRAWANVYVSQDFDMRSVFADILRQLTQDEV-D-----EES 412 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~-~~--~~~---f~--~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~-~-----~~~ 412 (501)
.+++|.|+.|+|||||.+.+..+. .+ ... |. ...| + .+ .+.+..+..... . ..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--I--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--E--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 699999999999999999875321 11 111 10 1112 1 11 345555554321 1 112
Q ss_pred CHHHHHHHHHHhcCCc--eEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 413 SLDDLESEFTGILYEK--RYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 413 ~~~~~~~~l~~~l~~~--r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
.-+...-.+...+..+ +-++++|+--. ......+...+... ...|..||++|.+......
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHh
Confidence 2233344455555566 77888999754 23333333333331 1247789999998876643
No 366
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.64 E-value=0.0097 Score=53.32 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=28.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW 381 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w 381 (501)
...+|.+.|++|+||||+|+.++. .....+....+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~ 40 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIY 40 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEE
Confidence 446999999999999999999988 55555655555
No 367
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.64 E-value=0.0083 Score=59.57 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-cc-ceeEEEEeCC-CCChHHHHHHHHHHhccCCC
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PC-RAWANVYVSQ-DFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~-~~w~~v~~~~-~~~~~~~~~~i~~~l~~~~~ 408 (501)
..++.+++..-. +-..+.|+|++|+|||||++.+++ .+.... +. .+| +.+.+ ..++.++...++..+.....
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv--~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMV--LLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEE--EEecCCCCCHHHHHHHHhhhEEeecC
Confidence 344666665322 224679999999999999999888 444333 23 245 55644 44677888888776665432
Q ss_pred CCCC----CHHHHHHHHHHhc--CCceEEEEEcCCCC
Q 010799 409 DEES----SLDDLESEFTGIL--YEKRYLVVLDDVHS 439 (501)
Q Consensus 409 ~~~~----~~~~~~~~l~~~l--~~~r~LlVlDnv~~ 439 (501)
.... ..-.....+.+++ .++.++||+|++..
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 1111222333333 36789999999864
No 368
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.64 E-value=0.002 Score=63.59 Aligned_cols=48 Identities=2% Similarity=0.073 Sum_probs=40.9
Q ss_pred cccccchhhHHHHHHHHhcC----CCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799 133 TGILDLNKEVNKLADFLIRS----HSSLFTISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 180 (501)
.+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.-
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999742 3356899999999999999999998644
No 369
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.012 Score=57.41 Aligned_cols=67 Identities=27% Similarity=0.269 Sum_probs=49.5
Q ss_pred CCCCCCccccccccceeecchhHHHHHHHhhcC------------CCCceEEEEEecCCCChHHHHHHHHcccccccCCc
Q 010799 310 PKQVPDEEISEEVTAVVSMENDILKLAKLTLNS------------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP 377 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~ 377 (501)
+..++..++-....++-|-+..++.|.+++.-+ -...+-|.++||+|+|||-||+.++. +....|-
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~fI 156 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAK--EAGANFI 156 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHH--HcCCCcc
Confidence 344455566667788899999999887775221 12346899999999999999999998 6666663
Q ss_pred c
Q 010799 378 C 378 (501)
Q Consensus 378 ~ 378 (501)
.
T Consensus 157 n 157 (386)
T KOG0737|consen 157 N 157 (386)
T ss_pred e
Confidence 3
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.63 E-value=0.0012 Score=55.04 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=19.5
Q ss_pred EEEEEeeCChhhHHHHhhhhc
Q 010799 158 TISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~ 178 (501)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 371
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.018 Score=61.20 Aligned_cols=46 Identities=9% Similarity=-0.164 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3578999888888888887542 235677899999999999988864
No 372
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.60 E-value=0.011 Score=52.81 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=60.1
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhccCCCCC-------CCCHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQDEVDE-------ESSLDDLE 418 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~ 418 (501)
.+++|.|+.|+|||||.+.++. .... ..+.++ +...+.. .........+.-......... .+.-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G--~~~~-~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG--LLRP-TSGRVRLDGADISQ-WDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--ccCC-CCCeEEECCEEccc-CCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 5999999999999999999887 2222 223222 1111110 011111000000000000000 11222334
Q ss_pred HHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 419 SEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 419 ~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
-.+...+..++-++++|+.-. ......+...+... ...|..||++|.+......
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHh
Confidence 445555666777899999754 22233333333321 1237789999988876643
No 373
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.026 Score=58.99 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=37.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997643 234567899999999999988753
No 374
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.019 Score=57.74 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=36.9
Q ss_pred cccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799 131 KKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 131 ~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
...+++|.+..+..|.+.+..+. -...+-++|+.|+||+|||..+.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A 62 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMA 62 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999988653 23457899999999999986654
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.56 E-value=0.012 Score=60.86 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=56.1
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD- 409 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~- 409 (501)
-+..|.+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++| ++.. .+...+... +..++.....
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlY--vs~E--es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLY--VSGE--ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEcc--ccHHHHHHH-HHHcCCChhcE
Confidence 34556666644434457999999999999999999887 33322234566 5543 233333222 3344332110
Q ss_pred ---CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 410 ---EESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 410 ---~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
...+.+.+...+.+ .+.-++|+|.+..
T Consensus 138 ~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 138 YLLAETNLEAILATIEE---EKPDLVVIDSIQT 167 (446)
T ss_pred EEeCCCCHHHHHHHHHh---hCCCEEEEechhh
Confidence 12344444444432 3556899999764
No 376
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.023 Score=60.72 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=37.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+.-+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987652 234567899999999999988764
No 377
>PRK09183 transposase/IS protein; Provisional
Probab=96.55 E-value=0.0062 Score=58.23 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=40.2
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
..+.|+|.+|+|||+||..+.+... ...+.+. ++ +..++...+...... ..+...+...+ .+.-+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~-~~------~~~~l~~~l~~a~~~------~~~~~~~~~~~-~~~dl 167 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVR-FT------TAADLLLQLSTAQRQ------GRYKTTLQRGV-MAPRL 167 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEE-EE------eHHHHHHHHHHHHHC------CcHHHHHHHHh-cCCCE
Confidence 4577999999999999999975322 2222222 32 334444444322211 11223333322 34459
Q ss_pred EEEecCCC
Q 010799 237 VVIINART 244 (501)
Q Consensus 237 lVlDdv~~ 244 (501)
+||||+..
T Consensus 168 LiiDdlg~ 175 (259)
T PRK09183 168 LIIDEIGY 175 (259)
T ss_pred EEEccccc
Confidence 99999863
No 378
>PRK07667 uridine kinase; Provisional
Probab=96.54 E-value=0.0046 Score=56.39 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.+.+.+........+|+|.|++|+||||+|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566677765556668999999999999999999877
No 379
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.54 E-value=0.0091 Score=58.76 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC----ccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF----PCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f----~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
..|..+|..+=..-.++.|+|++|+|||+|+..++......... ..++| ++....++..+ +.+++..+.....
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvy--IdtE~~f~~~R-l~~ia~~~~~~~~ 159 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALY--IDTEGTFRPER-LLAIAERYGLNPE 159 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEE--EECCCCCCHHH-HHHHHHHcCCChH
Confidence 34445554443556799999999999999998877521111111 24578 88766666554 3344444333211
Q ss_pred C--------CCCCHHHH---HHHHHHhcCC-ceEEEEEcCCCC
Q 010799 409 D--------EESSLDDL---ESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 409 ~--------~~~~~~~~---~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
. ...+.++. +..+...+.+ +.-|||+|.+..
T Consensus 160 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 160 DVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 0 12233333 3333333433 456999999754
No 380
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.54 E-value=0.064 Score=59.69 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=37.4
Q ss_pred cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|.++.++.+.+++.. ...+-.++.++|.+|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999887752 2223457899999999999999999853
No 381
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.034 Score=58.51 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=58.3
Q ss_pred ccceeecchhHHHH---HHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 322 VTAVVSMENDILKL---AKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 322 ~~~fvGR~~~~~~l---~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
+.+.-|.++..+++ .+.|.+++ .-++-+.++|++|+|||.||+.++. ...-.| ++.+..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg--EA~VPF-------f~iSGS-- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVPF-------FSISGS-- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhc--ccCCCc-------eeccch--
Confidence 45677877665555 44454432 2346799999999999999999998 433333 222221
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
++.+.+-+-. .....+.+.+..++-+++|++|.++.
T Consensus 218 ------~FVemfVGvG------AsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 218 ------DFVEMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred ------hhhhhhcCCC------cHHHHHHHHHhhccCCCeEEEehhhh
Confidence 1222222211 22344666666667789999999875
No 382
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.52 E-value=0.0091 Score=56.21 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=54.9
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------C
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELVTDILKQVGGSKVE-----------K 218 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~ 218 (501)
+.-.++.|+|.+|+|||+|+.++.-....... -...+|++....++...+.+ +++.++..... +
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 35678999999999999999988633222221 35788999888887665543 33443322111 1
Q ss_pred cch---HHHHHHHHccC--CeEEEEEecCCC
Q 010799 219 QLD---PQKKLRKLFTE--NRYLVVIINART 244 (501)
Q Consensus 219 ~~~---~~~~l~~~l~~--kr~LlVlDdv~~ 244 (501)
..+ ....+...+.. +--|||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 111 23444455533 456899999853
No 383
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.52 E-value=0.0062 Score=55.60 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=61.4
Q ss_pred cchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC----C--C---CHHH----H
Q 010799 137 DLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE----E--L---ERRE----L 203 (501)
Q Consensus 137 g~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~----~--~---~~~~----l 203 (501)
.+.......++.|. +..++.+.|.+|.|||.||....-+.-..+.|+..+++.-.- . | +..+ .
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44556666777777 356889999999999999877765544457788777663211 1 0 1111 1
Q ss_pred HHHHHHHhcCCCCcCcchHHHHH---------HHHccCC---eEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799 204 VTDILKQVGGSKVEKQLDPQKKL---------RKLFTEN---RYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
+..+.+.+..-... ......+ ..+++|+ ..+|++|+..| .+++..+ +...+.|||||++=-
T Consensus 80 ~~p~~d~l~~~~~~--~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD 154 (205)
T PF02562_consen 80 LRPIYDALEELFGK--EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGD 154 (205)
T ss_dssp THHHHHHHTTTS-T--TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHHhCh--HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecC
Confidence 22222222221111 0111111 1345564 35899999855 4445444 445577999999864
Q ss_pred cc
Q 010799 270 EA 271 (501)
Q Consensus 270 ~~ 271 (501)
..
T Consensus 155 ~~ 156 (205)
T PF02562_consen 155 PS 156 (205)
T ss_dssp --
T ss_pred ce
Confidence 43
No 384
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.51 E-value=0.009 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++++.++|+.|+||||.+-.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 46899999999999987766665
No 385
>PRK06620 hypothetical protein; Validated
Probab=96.49 E-value=0.0039 Score=57.79 Aligned_cols=24 Identities=17% Similarity=-0.092 Sum_probs=20.7
Q ss_pred eEEEEEeeCChhhHHHHhhhhccc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~ 180 (501)
+.+-|+|.+|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999987543
No 386
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0032 Score=59.19 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=39.0
Q ss_pred ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.++..+.|.=++.. .....-.+.++||+|.||||||.-+++
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 47799999999888766642 334556899999999999999999998
No 387
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.48 E-value=0.015 Score=57.78 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD 409 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 409 (501)
.|.++|..+=..-.++-|+|.+|+|||+|+..++....... .-..++| ++....++..++ .+++..+......
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vly--IdtE~~f~~eRl-~qia~~~~~~~~~ 187 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMY--IDTEGTFRPQRL-IQIAERFGLNGAD 187 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEE--EECCCCccHHHH-HHHHHHcCCChhh
Confidence 34444544334557899999999999999988774212111 1135788 888877777664 4556555433211
Q ss_pred --------CCCCHHHHHHHHH---HhcC-CceEEEEEcCCCC
Q 010799 410 --------EESSLDDLESEFT---GILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 --------~~~~~~~~~~~l~---~~l~-~~r~LlVlDnv~~ 439 (501)
...+.++....+. ..+. .+.-|||+|.+..
T Consensus 188 ~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred hccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 2234444433333 3333 3456999999764
No 388
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.48 E-value=0.018 Score=54.25 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 411 ESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.+.-+...-.+...|..+.-+|+||+--+. -++-++...+.. ..|..||+++.+.+.+..++
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~---~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR---EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHHhC
Confidence 344556667777888888889999985441 122223333332 45788999999999888876
No 389
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.47 E-value=0.012 Score=55.16 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
+...++.|.|++|+|||++|.+++... .... ..+++ ++ ...+..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~y--i~--~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSY--VS--TQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEE--Ee--CCCCHHHHHHHH
Confidence 444699999999999999997776622 1222 23344 44 333445555554
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.034 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.++.++|++|+||||++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988877
No 391
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.017 Score=51.54 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=61.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe-----------------CCCCCh---HHHHHHHHHHhccC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV-----------------SQDFDM---RSVFADILRQLTQD 406 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~-----------------~~~~~~---~~~~~~i~~~l~~~ 406 (501)
.+++|.|+.|+|||||.+.++.. .. ...+.++ +.- .+...+ ..+...+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~--~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------ 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL--LK-PDSGEIK--VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------ 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEE--ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh------
Confidence 59999999999999999998773 22 1233333 211 111000 01111111
Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 407 EVDEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
.+.-+...-.+...+..++-++++|+--. ......+...+... ...|..+|++|.+......+
T Consensus 96 ----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 96 ----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL-KKEGKTILLSSHILEEAERL 161 (173)
T ss_pred ----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHh
Confidence 11222334456666667888999999764 22223333333321 12367899999988766644
No 392
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.012 Score=56.06 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
-+..++|||++|.|||-+|+.++. +..-.| +.++.. +|..... ..+..-+.++++..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf-------l~v~ss--------~lv~kyi------GEsaRlIRemf~yA 221 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF-------LKVVSS--------ALVDKYI------GESARLIRDMFRYA 221 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHH--hcCCce-------EEeeHh--------hhhhhhc------ccHHHHHHHHHHHH
Confidence 346899999999999999999988 544444 332211 1111111 11112223333333
Q ss_pred cCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 425 LYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
-...+|.|.+|+++.. ..+=+|+..+..+......++|+||-...
T Consensus 222 ~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 222 REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 3445799999998751 11223444444433456788999987654
No 393
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.46 E-value=0.01 Score=61.44 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=57.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
...+-|+|..|+|||+|++.+.+.- .........+++ +..++...+...+.... +....+++.++ +.-
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l--~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~-----~~~~~~~~~~~-~~d 208 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI--ESNFSDLKVSYM----SGDEFARKAVDILQKTH-----KEIEQFKNEIC-QND 208 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH--HHhCCCCeEEEE----EHHHHHHHHHHHHHHhh-----hHHHHHHHHhc-cCC
Confidence 3567899999999999999998632 211111111222 45667777777765321 12334444444 334
Q ss_pred EEEEecCCCh---hHH-HHHhhcCCC-CCCCcEEEEEecc
Q 010799 236 LVVIINARTP---DIW-DILKYLFPN-SSNGSRVILSFQE 270 (501)
Q Consensus 236 LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTtr~ 270 (501)
+|||||+... ..| +.+...+.. ...|..||+|+..
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 8889999532 223 233322221 1234567777654
No 394
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.46 E-value=0.013 Score=57.79 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD- 409 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~- 409 (501)
+..+|..+=....++-|+|++|+|||+++.+++....... .-..++| ++....++..++. +++..+......
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~y--i~te~~f~~~rl~-~~~~~~gl~~~~~ 160 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVY--IDTENTFRPERIM-QMAEARGLDPDEV 160 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEE--EECCCCCCHHHHH-HHHHHcCCCHHHH
Confidence 3344433334557999999999999999999876322211 1136788 8887766665543 444443322100
Q ss_pred -------CCCCHH---HHHHHHHHhcCCc---eEEEEEcCCCC
Q 010799 410 -------EESSLD---DLESEFTGILYEK---RYLVVLDDVHS 439 (501)
Q Consensus 410 -------~~~~~~---~~~~~l~~~l~~~---r~LlVlDnv~~ 439 (501)
...+.+ .+.+.+.+.+... .-+||+|.+..
T Consensus 161 ~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 161 LKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred hhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 111111 2334455555432 45899998764
No 395
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.019 Score=57.32 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=38.9
Q ss_pred ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.....++|-++....|...+.++. -...+-|+|..|+||||||..+..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 345679999999999999997653 234688899999999999987764
No 396
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.45 E-value=0.0084 Score=62.02 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=57.2
Q ss_pred cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799 328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE 407 (501)
Q Consensus 328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~ 407 (501)
...-+..|.+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++| ++.. .+...+... +..+....
T Consensus 76 i~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlY--vs~E--Es~~qi~~r-a~rlg~~~ 148 (454)
T TIGR00416 76 FSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLY--VSGE--ESLQQIKMR-AIRLGLPE 148 (454)
T ss_pred cccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEE--EECc--CCHHHHHHH-HHHcCCCh
Confidence 34445666676654445557999999999999999999876 33322234566 6543 233333221 22222211
Q ss_pred CC----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 408 VD----EESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 408 ~~----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
.. ...+.+.+...+.+ .+.-++|+|.+..
T Consensus 149 ~~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 149 PNLYVLSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred HHeEEcCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 10 12344444444432 2456899999764
No 397
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.45 E-value=0.021 Score=56.09 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=61.0
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD 409 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 409 (501)
.|.++|..+=..-+++-|+|++|+|||+|+..++-.-+... .-..++| ++....++..++. +++..+......
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvY--IdtE~~f~~eRi~-~~a~~~g~d~~~ 160 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAY--IDTEGTFRPDRIR-AIAERFGVDPDA 160 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEE--EEcCCCCCHHHHH-HHHHHcCCChHH
Confidence 34445544445557999999999999999988764212211 1235788 8887777776654 455555443211
Q ss_pred --------CCCCHHHHH---HHHHHhcCC-ceEEEEEcCCCC
Q 010799 410 --------EESSLDDLE---SEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 410 --------~~~~~~~~~---~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
...+.++.. ..+...+.. +--|||+|.+..
T Consensus 161 ~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred hcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 122344443 333334433 455899999764
No 398
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.45 E-value=0.018 Score=54.44 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=62.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc--------------------
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-------------------- 404 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~-------------------- 404 (501)
.-.++.|.|.+|+|||+++..++.+.. ..+=..++| ++.. .+..++...++....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly--~s~E--~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLF--FSLE--MSKEQLLQRLLASESGISLSKLRTGSLSDEDWERL 86 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEE--EeCC--CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHH
Confidence 346999999999999999998876322 221234455 5532 222233333221110
Q ss_pred --------cCC----CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEE
Q 010799 405 --------QDE----VDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRV 461 (501)
Q Consensus 405 --------~~~----~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~i 461 (501)
... .....+.+++...+...... +.-++|+|.+... ..+..+...|.......++.+
T Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~i 166 (242)
T cd00984 87 AEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPV 166 (242)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeE
Confidence 000 00123566677666665543 4568999997531 112233333332112457888
Q ss_pred EEEeC
Q 010799 462 ILITR 466 (501)
Q Consensus 462 IiTtR 466 (501)
|+|+.
T Consensus 167 i~~~q 171 (242)
T cd00984 167 IALSQ 171 (242)
T ss_pred EEecc
Confidence 88884
No 399
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.44 E-value=0.025 Score=55.16 Aligned_cols=135 Identities=22% Similarity=0.279 Sum_probs=72.8
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCcccee--EEEEeCCC---------CC-
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFPCRAW--ANVYVSQD---------FD- 391 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~~~~w--~~v~~~~~---------~~- 391 (501)
+-+|..+..--.++|.+ +....|.+.|.+|+|||.||....-.... +..|..++- .-+.+.++ ..
T Consensus 226 i~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 226 IRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred cCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 44566777666777754 56789999999999999999776543222 233333211 00111110 01
Q ss_pred ---hHHHHHHHHHHhccCCCCCCCCHHHHHHHH----------HHhcCCc---eEEEEEcCCCChhhHHHHHHhcCCCCC
Q 010799 392 ---MRSVFADILRQLTQDEVDEESSLDDLESEF----------TGILYEK---RYLVVLDDVHSPGAWYDLKRIFSPQAS 455 (501)
Q Consensus 392 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l----------~~~l~~~---r~LlVlDnv~~~~~~~~l~~~l~~~~~ 455 (501)
+..++. -++.+...... . ....+.+ -++++++ .-++|+|++++..- .+++-.+.. .
T Consensus 304 ~PWmq~i~D-nLE~L~~~~~~---~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR--~ 375 (436)
T COG1875 304 GPWMQAIFD-NLEVLFSPNEP---G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTR--A 375 (436)
T ss_pred cchHHHHHh-HHHHHhccccc---c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHh--c
Confidence 122222 22222222211 1 1222222 2344454 45899999998543 345555666 7
Q ss_pred CCCCEEEEEeCChH
Q 010799 456 PIGSRVILITREAY 469 (501)
Q Consensus 456 ~~~~~iIiTtR~~~ 469 (501)
+.||+|+.|.--..
T Consensus 376 G~GsKIVl~gd~aQ 389 (436)
T COG1875 376 GEGSKIVLTGDPAQ 389 (436)
T ss_pred cCCCEEEEcCCHHH
Confidence 88999999864333
No 400
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.43 E-value=0.0088 Score=64.99 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 412 SSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
+.-+...=.+.+.+-.++-+|+||+.-+. +.-..+...+.. ...|..+|+.|........+
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~--~~~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ--ILQGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH--HhcCCeEEEEEccchHhhhc
Confidence 34455566777778888899999997652 222334444444 34445555555555544443
No 401
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.43 E-value=0.015 Score=55.82 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHH
Q 010799 141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELV 204 (501)
Q Consensus 141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~ 204 (501)
-.+++..++..+ ..+-+.|.+|+|||+||+.+.+ .... ....++.....+..+++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 344455555432 2456899999999999999984 2211 22445555555555544
No 402
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.43 E-value=0.0089 Score=59.81 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
..++-+-|||..|.|||.|.-.+|.......+-. +.| + .-+.++...+- ++... .+.+..+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R-~HF---h----~Fm~~vh~~l~-~~~~~--------~~~l~~va~ 122 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR-VHF---H----EFMLDVHSRLH-QLRGQ--------DDPLPQVAD 122 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccc-ccc---c----HHHHHHHHHHH-HHhCC--------CccHHHHHH
Confidence 3467899999999999999999998543322111 111 0 01222222222 22211 112455556
Q ss_pred hcCCceEEEEEcCCCC--hhh---HHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 424 ILYEKRYLVVLDDVHS--PGA---WYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 424 ~l~~~r~LlVlDnv~~--~~~---~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
.+.++..||+||++.- ..+ +..|+..+-. .|. +||+|.|..
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~----~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFK----RGV-VLVATSNRP 168 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHH----CCC-EEEecCCCC
Confidence 6667777999999764 332 2333333333 354 555555543
No 403
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.43 E-value=0.013 Score=57.96 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=59.0
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC----ccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF----PCRAWANVYVSQDFDMRSVFADILRQLTQDEVD- 409 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f----~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~- 409 (501)
+.++|..+=....++-|+|++|+|||+++.+++........+ ..++| ++....++...+. +++..++.....
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~y--i~te~~f~~~rl~-~~~~~~g~~~~~~ 167 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVY--IDTEGTFRPERIE-QMAEALGLDPDEV 167 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEE--EeCCCCcCHHHHH-HHHHHcCCChHhh
Confidence 334443333455799999999999999999987632221111 35778 8887766665544 334443322110
Q ss_pred -------CCCCH---HHHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799 410 -------EESSL---DDLESEFTGILYE--KRYLVVLDDVHS 439 (501)
Q Consensus 410 -------~~~~~---~~~~~~l~~~l~~--~r~LlVlDnv~~ 439 (501)
...+. ......+...+.. +--|||+|.+..
T Consensus 168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 11111 2334555566654 345999999754
No 404
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.42 E-value=0.03 Score=59.01 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=39.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
..+++|....+.++.+.+..-......|.|.|.+|+||+.+|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999998887543444568999999999999999998773
No 405
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.41 E-value=0.029 Score=58.75 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=38.1
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|....+.++.+.+..-......+.|+|.+|+|||++|+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~ 183 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh
Confidence 4689999999988887754444456799999999999999999776
No 406
>PTZ00035 Rad51 protein; Provisional
Probab=96.41 E-value=0.024 Score=56.26 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
..|.++|..+=..-.++.|+|++|+|||+|+..++...+... .-..++| ++....++..+ +.+++..+.....
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvy--IdtE~~f~~er-i~~ia~~~g~~~~ 181 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLY--IDTEGTFRPER-IVQIAERFGLDPE 181 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEE--EEccCCCCHHH-HHHHHHHhCCChH
Confidence 344555544445567999999999999999988875222111 1234567 77766555555 3444444433211
Q ss_pred C--------CCCCHHHHHHHH---HHhcCC-ceEEEEEcCCCC
Q 010799 409 D--------EESSLDDLESEF---TGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 409 ~--------~~~~~~~~~~~l---~~~l~~-~r~LlVlDnv~~ 439 (501)
. ...+.++....+ ...+.. +--|||+|.+..
T Consensus 182 ~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 182 DVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred hHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0 223444444433 333333 456999999764
No 407
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.40 E-value=0.021 Score=58.07 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=36.7
Q ss_pred ccccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.++.|.+..+++|.+.+.- . -...+-+.++|.+|+|||+||+.+.+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45788999888888776641 1 123466789999999999999999864
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.031 Score=50.77 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 410 EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 410 ~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+.+.-+...-.+.+.|.=++-++.||+.-+ ++-..+.+..+... ...|...|+.|.+-..+....
T Consensus 136 qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L-A~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH-HHcCCeEEEEechhHHHHHhh
Confidence 344455556667777777788899999876 33344444433331 346889999999988888776
No 409
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.38 E-value=0.0064 Score=52.11 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=30.9
Q ss_pred ccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccc
Q 010799 136 LDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECET 181 (501)
Q Consensus 136 vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 181 (501)
||.-..+.++.+.+..-......|-|.|-.|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4555566666666653222345678999999999999999996543
No 410
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.022 Score=53.87 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=46.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
-+-|.++|++|.|||.||+.++. .....| +++++. ++.....+. .+.+++.+.+.-
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVAT--EAnSTF-------FSvSSS--------DLvSKWmGE-------SEkLVknLFemA 221 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVAT--EANSTF-------FSVSSS--------DLVSKWMGE-------SEKLVKNLFEMA 221 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHh--hcCCce-------EEeehH--------HHHHHHhcc-------HHHHHHHHHHHH
Confidence 37899999999999999999998 433333 455432 222222222 234555555555
Q ss_pred C-CceEEEEEcCCCC
Q 010799 426 Y-EKRYLVVLDDVHS 439 (501)
Q Consensus 426 ~-~~r~LlVlDnv~~ 439 (501)
+ +++-+|++|+++.
T Consensus 222 Re~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDS 236 (439)
T ss_pred HhcCCcEEEeehhhh
Confidence 4 5688999999986
No 411
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.38 E-value=0.011 Score=64.31 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=63.1
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|..+|. .+=+.-+++-|+|++|+|||+|+.+++. .....-..++| +...+..+. ..++.++.+...
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~y--Id~E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAF--IDAEHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--ECCccchhH-----HHHHHcCCChhHeE
Confidence 34445554 3335568999999999999999988766 22233345677 776555552 355555554321
Q ss_pred --CCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
+..+.+.....+...+.. ..-|||+|.+..
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence 344566677777776654 466899999763
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.37 E-value=0.0079 Score=55.07 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=63.3
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH--HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER--RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR 234 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr 234 (501)
.+|.|+|..|.||||++..+... ...+...++++ +.++... .. ...++.+-. .........+.++..|+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~-~~~~i~q~~--vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHES-KRSLINQRE--VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccC-ccceeeecc--cCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887632 22233334433 2222111 00 001111100 01112234667777777666
Q ss_pred EEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 235 YLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 235 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
=+|++|++.+.+.+..+.... ..|..++.|+...+++.
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 799999999877765544332 24666889998877664
No 413
>PRK06696 uridine kinase; Validated
Probab=96.37 E-value=0.0038 Score=58.39 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHhc-CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 138 LNKEVNKLADFLIR-SHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 138 ~~~~~~~l~~~L~~-~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
|++-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667778888764 234678999999999999999999984
No 414
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.033 Score=59.85 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=37.0
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997642 235577899999999999877653
No 415
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.04 Score=58.58 Aligned_cols=46 Identities=9% Similarity=-0.095 Sum_probs=38.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653 345677999999999999998864
No 416
>PRK06921 hypothetical protein; Provisional
Probab=96.36 E-value=0.0093 Score=57.22 Aligned_cols=24 Identities=21% Similarity=0.046 Sum_probs=21.1
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..-+.++|..|+|||.||..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999863
No 417
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.35 E-value=0.013 Score=60.08 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=44.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhccccccccc--ceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYF--QCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN 233 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k 233 (501)
...+-|+|..|+|||+|++.+++.- .+.. ...+++ +..++...+...+... ....+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYV------SSEKFTNDFVNALRNN-------KMEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEE------EHHHHHHHHHHHHHcC-------CHHHHHHHHHh-
Confidence 3567899999999999999999643 2222 122344 3445555666655432 12334444433
Q ss_pred eEEEEEecCCC
Q 010799 234 RYLVVIINART 244 (501)
Q Consensus 234 r~LlVlDdv~~ 244 (501)
.-+|+|||+..
T Consensus 200 ~dlLiiDDi~~ 210 (405)
T TIGR00362 200 VDLLLIDDIQF 210 (405)
T ss_pred CCEEEEehhhh
Confidence 23788999963
No 418
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.015 Score=57.56 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=62.0
Q ss_pred chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
...+.++.+.|..+--.-.++.|-|-||+|||||..+++. +..... .+++ ++...+...+-.. +..|+....
T Consensus 76 ~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLY----VsGEES~~QiklR-A~RL~~~~~ 147 (456)
T COG1066 76 STGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLY----VSGEESLQQIKLR-ADRLGLPTN 147 (456)
T ss_pred cCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEE----EeCCcCHHHHHHH-HHHhCCCcc
Confidence 4456667776744333336999999999999999999988 555444 4444 5555555443222 233433222
Q ss_pred C----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 409 D----EESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 409 ~----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
. ...+.+++.+.+.+ .++-++|+|.++.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ceEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 1 23455555555554 6788999999875
No 419
>PRK06762 hypothetical protein; Provisional
Probab=96.35 E-value=0.016 Score=51.22 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999887
No 420
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.34 E-value=0.012 Score=54.37 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=51.9
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh-c---CC----CCcC---cchH
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV-G---GS----KVEK---QLDP 222 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~-~---~~----~~~~---~~~~ 222 (501)
+.-.++-|+|.+|+|||+|+.++..+ ....-...+|+.... ++...+.+. .+.. . .+ ...+ ....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 35688999999999999999887643 223346788998876 666655543 2221 0 00 0001 1112
Q ss_pred HHHHHHHccC-CeEEEEEecCC
Q 010799 223 QKKLRKLFTE-NRYLVVIINAR 243 (501)
Q Consensus 223 ~~~l~~~l~~-kr~LlVlDdv~ 243 (501)
...+.+.+.. +--+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4445555544 34589999974
No 421
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.34 E-value=0.015 Score=52.37 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 419 SEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 419 ~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
-.+...+-.++-++++|+--. ......+...+... ...+..||++|.+......+
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~ 170 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGL 170 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence 345556666778999999754 22233333333321 12367899999987655543
No 422
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.14 Score=49.96 Aligned_cols=140 Identities=7% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc------ccCC-c-cceeEEEEeCCCCChHHHHHHHHHHh
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT------KKNF-P-CRAWANVYVSQDFDMRSVFADILRQL 403 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~------~~~f-~-~~~w~~v~~~~~~~~~~~~~~i~~~l 403 (501)
++.+...+.. +.-.+...++|..|.||+++|..+.+..-. .... + ...+ +.....
T Consensus 5 ~~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~-------------- 67 (299)
T PRK07132 5 IKFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDK-------------- 67 (299)
T ss_pred HHHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCC--------------
Confidence 3445555532 234478889999999999999998773200 1111 0 1111 110010
Q ss_pred ccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcC
Q 010799 404 TQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFS 475 (501)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~ 475 (501)
....+++.....+.- .+.+-++|+|+++.. ...+.|+..+.. .++.+.+|++|.+ ..+...+.
T Consensus 68 -------~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~ 138 (299)
T PRK07132 68 -------DLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIV 138 (299)
T ss_pred -------cCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHH
Confidence 112222322222221 146678888998763 457788888888 6777877776644 44444444
Q ss_pred CCCcceeCCCCChHHHHHHHHH
Q 010799 476 PSIFLHQLRPLNEEESGKLFQR 497 (501)
Q Consensus 476 ~~~~~~~l~~L~~~ea~~Lf~~ 497 (501)
+...++++.+++.++..+.+..
T Consensus 139 SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 139 SRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred hCeEEEECCCCCHHHHHHHHHH
Confidence 4678999999999999877765
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.33 E-value=0.0047 Score=53.07 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=50.6
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCc------c-----hHHHHH
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQ------L-----DPQKKL 226 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~------~-----~~~~~l 226 (501)
+|-+.|++|+||||+|+.+..... ++.+ +...+.. .+........ . .+...+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---------~~~i----~~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---------AVVI----SQDEIRR----RLAGEDPPSPSDYIEAEERAYQILNAAI 63 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---------EEEE----EHHHHHH----HHCCSSSGCCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---------CEEE----eHHHHHH----HHcccccccchhHHHHHHHHHHHHHHHH
Confidence 578899999999999999873222 2222 2333333 2322111110 0 013455
Q ss_pred HHHccCCeEEEEEec-CCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 227 RKLFTENRYLVVIIN-ARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 227 ~~~l~~kr~LlVlDd-v~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
...++.... +|+|+ .+....+..+...+...+....+|..+-+.+++.
T Consensus 64 ~~~l~~g~~-~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~ 112 (143)
T PF13671_consen 64 RKALRNGNS-VVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLR 112 (143)
T ss_dssp HHHHHTT-E-EEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHH
T ss_pred HHHHHcCCC-ceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHH
Confidence 566655555 56675 4555555555554443332344555554555543
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.046 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.9
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++.++|+.|+||||.+..++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998887776
No 425
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.015 Score=54.31 Aligned_cols=49 Identities=10% Similarity=-0.101 Sum_probs=35.4
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhhccccccccc------ceeEEEEcCCCCCHHHHH
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYF------QCRAWVPVPEELERRELV 204 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F------~~~~wv~vs~~~~~~~l~ 204 (501)
+.-.++.|+|.+|+|||+|+.++.-.. ...- ...+|+.....++...+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 346789999999999999998886322 1222 456888888877766554
No 426
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.32 E-value=0.0069 Score=57.75 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=54.2
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccCC------CCCCCCHH----
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQDE------VDEESSLD---- 415 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 415 (501)
..++|.|.+|+|||+|+..+++ ....+|...++ ++-+.... .+.++..++...-..+. ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V-~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSV-FAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEE-EEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5889999999999999999998 66656655444 14444433 44555555544211110 00111111
Q ss_pred -HHHHHHHHhc--C-CceEEEEEcCCCC
Q 010799 416 -DLESEFTGIL--Y-EKRYLVVLDDVHS 439 (501)
Q Consensus 416 -~~~~~l~~~l--~-~~r~LlVlDnv~~ 439 (501)
...-.+.+++ + ++.+||++|++-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2234456666 2 6799999999865
No 427
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.31 E-value=0.011 Score=53.14 Aligned_cols=120 Identities=16% Similarity=0.042 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHH--HHh--ccCCCCCCCC------
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADIL--RQL--TQDEVDEESS------ 413 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~--~~l--~~~~~~~~~~------ 413 (501)
....|.|+|..|-|||+.|...+. +...+=..+.. -.+.-...+.....+..+- ... .........+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346999999999999999988765 33222222222 0022221233333333310 000 0000000111
Q ss_pred -HHHHHHHHHHhcCCceE-EEEEcCCCCh-----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 414 -LDDLESEFTGILYEKRY-LVVLDDVHSP-----GAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 414 -~~~~~~~l~~~l~~~r~-LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
........++.+.+.+| |+|||++-.. -+.+++...+.. .+++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCC
Confidence 12334555666655554 9999998652 334566777766 67789999999986
No 428
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.039 Score=51.87 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 411 ESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.+.-+...-.+.+.|..++=||+||+--. ...+-.++..+.. .|..||++|.+-.......
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcHHhHhhC
Confidence 34455666778888889999999998432 2334445555554 3999999999977555543
No 429
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.019 Score=50.34 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=63.9
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
.+++|.|+.|.|||||.+.+.. ... ...+.++ +......... .......+..-. +.+.-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g--~~~-~~~G~i~--~~~~~~~~~~--~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAG--LLK-PTSGEIL--IDGKDIAKLP--LEELRRRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCC-CCccEEE--ECCEEcccCC--HHHHHhceEEEe--eCCHHHHHHHHHHHHHh
Confidence 6999999999999999999987 333 2344444 3221111100 001111111100 02222333444556666
Q ss_pred CceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 427 EKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 427 ~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
..+-++++|+... ......+...+... ...+..+|++|.+......+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence 6678999999764 22333343433321 11257899999988776664
No 430
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.41 Score=48.03 Aligned_cols=86 Identities=15% Similarity=-0.031 Sum_probs=47.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc-CCCCCHHHHHHHHHHHhcCCCCc--CcchHHHHHHHHccC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV-PEELERRELVTDILKQVGGSKVE--KQLDPQKKLRKLFTE 232 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v-s~~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~l~~~l~~ 232 (501)
-.++.++|..|+||||++.++......+.....+..|+. .......+-++...+.++.+... ...++...+ ..+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcC
Confidence 468999999999999999888743221111223344432 22234455566666666654322 222333333 34445
Q ss_pred CeEEEEEecCC
Q 010799 233 NRYLVVIINAR 243 (501)
Q Consensus 233 kr~LlVlDdv~ 243 (501)
+. +|++|..-
T Consensus 216 ~D-lVLIDTaG 225 (374)
T PRK14722 216 KH-MVLIDTIG 225 (374)
T ss_pred CC-EEEEcCCC
Confidence 54 45588874
No 431
>PRK05973 replicative DNA helicase; Provisional
Probab=96.29 E-value=0.018 Score=54.00 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----------CCCCC
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----------DEESS 413 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 413 (501)
..-..+.|.|.+|+|||+++.+++.. ...+-..+++ ++... +...+...+... +.+.. .....
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vly--fSlEe--s~~~i~~R~~s~-g~d~~~~~~~~~~d~~d~~~ 134 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVF--FTLEY--TEQDVRDRLRAL-GADRAQFADLFEFDTSDAIC 134 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEE--EEEeC--CHHHHHHHHHHc-CCChHHhccceEeecCCCCC
Confidence 33469999999999999999998763 2222233445 55432 233333333221 21110 01123
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
.++....+... .+.-++|+|.+... ..+..+...|.......|..||+|+.-.
T Consensus 135 ~~~ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 135 ADYIIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 33344444431 23458999997532 1122222212221124588888887543
No 432
>PRK07667 uridine kinase; Provisional
Probab=96.28 E-value=0.0045 Score=56.45 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=31.7
Q ss_pred hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+.+.+.|....+...+|+|-|.+|.||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777876666678999999999999999999984
No 433
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.28 E-value=0.051 Score=51.55 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=64.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeE--E---EEeC----CCCChHHHH--------------HHHHHHh
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA--N---VYVS----QDFDMRSVF--------------ADILRQL 403 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~--~---v~~~----~~~~~~~~~--------------~~i~~~l 403 (501)
.+++|.|+.|+|||||++.++.. ....-..+.|+ . +.-. ...++.+.+ .+++..+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 59999999999999999998773 22111111110 0 1110 011222222 1122222
Q ss_pred ccCCC-----CCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 404 TQDEV-----DEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 404 ~~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
..... ...+.-+...-.+...|..++-+++||+--. ......+...+.......+..||++|.+......+.
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 22110 0122223334445556666778999999754 222233333333310123678999999987666543
No 434
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.28 E-value=0.019 Score=59.78 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=44.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccc--eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQ--CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN 233 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~--~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k 233 (501)
..-+-|+|.+|+|||+|++.+.+. +...+. ..+++ +..++...+...+... ....+.+.+++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYV------TSEKFTNDFVNALRNN-------TMEEFKEKYRS- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEE------EHHHHHHHHHHHHHcC-------cHHHHHHHHhc-
Confidence 456889999999999999999964 333332 22344 3444555555555321 12344444542
Q ss_pred eEEEEEecCC
Q 010799 234 RYLVVIINAR 243 (501)
Q Consensus 234 r~LlVlDdv~ 243 (501)
--+|+|||+.
T Consensus 212 ~dlLiiDDi~ 221 (450)
T PRK00149 212 VDVLLIDDIQ 221 (450)
T ss_pred CCEEEEehhh
Confidence 3488999995
No 435
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.28 E-value=0.016 Score=56.94 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=44.9
Q ss_pred HHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc----cccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799 148 FLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK----EYFQCRAWVPVPEELERRELVTDILKQVGGS 214 (501)
Q Consensus 148 ~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~----~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~ 214 (501)
+|..+=+.-+++-|+|.+|+|||+|+.++.-..... ..=...+||.....|+.+.+.+ ++++++.+
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 444333356788899999999999998765322221 1113678999999999888764 56666543
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.27 E-value=0.022 Score=51.39 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=24.9
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV 386 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~ 386 (501)
++.|.|++|+|||+|+.+++.. ....=..++| ++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~--~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLY--VTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEE--EEC
Confidence 3679999999999999998763 2222244566 654
No 437
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.27 E-value=0.016 Score=51.89 Aligned_cols=112 Identities=19% Similarity=0.136 Sum_probs=58.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhccc-cc--cc---ccceeEEEEcCCCCCHHHHHHHHHHHhcCCC---CcC--cch---
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECE-TV--KE---YFQCRAWVPVPEELERRELVTDILKQVGGSK---VEK--QLD--- 221 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~-~v--~~---~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~---~~~--~~~--- 221 (501)
-.+++|+|..|+|||||.+.+..+. ++ .. .|...-...+.+ .+.+..++... ... ..+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 3588999999999999999886321 11 11 111111122222 34566665432 111 111
Q ss_pred -HHHHHHHHccCC--eEEEEEecCCCh---hHHHHHhhcCCC-CCCCcEEEEEeccccchh
Q 010799 222 -PQKKLRKLFTEN--RYLVVIINARTP---DIWDILKYLFPN-SSNGSRVILSFQEADAAR 275 (501)
Q Consensus 222 -~~~~l~~~l~~k--r~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~iivTtr~~~va~ 275 (501)
-.-.+...+-.+ .-+++||+..+. ...+.+...+.. ...|..||++|++.+.+.
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122344444445 567888997542 222333322221 124677999999887654
No 438
>PRK08233 hypothetical protein; Provisional
Probab=96.27 E-value=0.012 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHcc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
..+|+|.|++|+||||||..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 439
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.27 E-value=0.003 Score=59.14 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=68.0
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-------
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE------- 407 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~------- 407 (501)
|.++|..+=+...++.|.|++|+|||+++.+++.. ...+.=..++| ++... +...+.+.+. .++.+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vly--vs~ee--~~~~l~~~~~-s~g~d~~~~~~~g 81 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLY--VSFEE--PPEELIENMK-SFGWDLEEYEDSG 81 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEE--EESSS---HHHHHHHHH-TTTS-HHHHHHTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEE--EEecC--CHHHHHHHHH-HcCCcHHHHhhcC
Confidence 44445343345579999999999999999997752 22220234456 55533 3344433332 222110
Q ss_pred -------CCC-----CCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799 408 -------VDE-----ESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 408 -------~~~-----~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
... ..+.+.+...+.+.+.. +...+|+|.+... ..+..+...+.. .++.+|+|
T Consensus 82 ~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~----~~~t~llt 157 (226)
T PF06745_consen 82 KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS----RGVTTLLT 157 (226)
T ss_dssp SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH----TTEEEEEE
T ss_pred CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH----CCCEEEEE
Confidence 001 34677778888877765 3478999986432 223334444433 46667777
Q ss_pred eC
Q 010799 465 TR 466 (501)
Q Consensus 465 tR 466 (501)
+.
T Consensus 158 ~~ 159 (226)
T PF06745_consen 158 SE 159 (226)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 440
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.27 E-value=0.0096 Score=62.02 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.++.|.+..++++.+.+... -...+-+-++|++|+|||++|+.+++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 356888999999888876421 112345788999999999999999964
No 441
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.25 E-value=0.0072 Score=56.55 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=29.4
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
+..++.+.+.....+..+|+|+|+||+|||||.-.+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455666666666667889999999999999999887763
No 442
>PTZ00494 tuzin-like protein; Provisional
Probab=96.23 E-value=0.18 Score=50.80 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=100.4
Q ss_pred cccceeecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
....||.|+++=..+.+.|.+ ....+|++++.|.-|+|||+|.+...+. ++ -..++ |.+... ++.++.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk----E~-~paV~--VDVRg~---EDtLrsV 438 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV----EG-VALVH--VDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH----cC-CCeEE--EEecCC---cchHHHH
Confidence 456799999999988888855 3456799999999999999999987762 22 23456 666544 3456677
Q ss_pred HHHhccCCCCC-CCCHHHHH---HHHHHhcCCceEEEEE--cCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799 400 LRQLTQDEVDE-ESSLDDLE---SEFTGILYEKRYLVVL--DDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYVAR 472 (501)
Q Consensus 400 ~~~l~~~~~~~-~~~~~~~~---~~l~~~l~~~r~LlVl--Dnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~ 472 (501)
...|+.+.... .+-++-+. ..-+....++.-+||+ -+-.+. ...++... |-. ...-|+|++----+.+.-
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-Lac--DrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVS--DCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHc--cchhheeeeechHhhhch
Confidence 77777764421 11222222 2333334455555554 333332 22223222 222 234577877654443222
Q ss_pred hc--CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 SF--SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 ~~--~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.. -+.-..|.+++++.++|.++-+..+
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 1245589999999999999877654
No 443
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.23 E-value=0.067 Score=49.93 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCC
Q 010799 418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLR 484 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~ 484 (501)
.-.+...+-.++-++++|+--+ ......+...+... ...|..||++|.+......+. ..++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vsH~~~~~~~~~--d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAALIGIFHDEEVRELVA--DRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhc--ceeEecC
Confidence 3344444555677999999754 23333444433331 123778999999987765443 3455443
No 444
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.05 Score=58.54 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHH
Confidence 4678999999999999998642 224567899999999999998864
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.063 Score=49.96 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=67.2
Q ss_pred eEEEEEecCCCChHHHHHHHHccccc----------------------ccCCcccee----EEEEeCCC------CChHH
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYT----------------------KKNFPCRAW----ANVYVSQD------FDMRS 394 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~----------------------~~~f~~~~w----~~v~~~~~------~~~~~ 394 (501)
..|+|.|++|+|||||-+.++.-... -+++.--.| +||...-. ..-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 59999999999999999988642110 011122234 22222111 01122
Q ss_pred HHHHHHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------hhHHHHHHhcCCCCCCCCCEEE
Q 010799 395 VFADILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSP-------GAWYDLKRIFSPQASPIGSRVI 462 (501)
Q Consensus 395 ~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------~~~~~l~~~l~~~~~~~~~~iI 462 (501)
...++++..+..... +.+.-....-.+.+.|..++-+|.+|+--.. .-.+.+...+.. .+..|+
T Consensus 110 ~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~----~~~Tvl 185 (248)
T COG1116 110 RAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE----TRKTVL 185 (248)
T ss_pred HHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh----hCCEEE
Confidence 344555554443322 3333344445566666677778889985441 223344444333 456778
Q ss_pred EEeCChHHHhhcC
Q 010799 463 LITREAYVARSFS 475 (501)
Q Consensus 463 iTtR~~~~~~~~~ 475 (501)
+.|.+-.-+-.++
T Consensus 186 lVTHdi~EAv~Ls 198 (248)
T COG1116 186 LVTHDVDEAVYLA 198 (248)
T ss_pred EEeCCHHHHHhhh
Confidence 8887766555544
No 446
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.21 E-value=0.0095 Score=53.50 Aligned_cols=23 Identities=22% Similarity=-0.006 Sum_probs=20.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhcc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999753
No 447
>PRK10867 signal recognition particle protein; Provisional
Probab=96.20 E-value=0.048 Score=55.80 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.++.++|++|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999997766655
No 448
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.041 Score=59.50 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=37.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999997653 234567899999999999988853
No 449
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.19 E-value=0.016 Score=56.61 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=60.7
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|...|. .+=+.-+++-|+|+.|+||||||..++. .....-..++| +...+..+. ..+..++.+...
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~--ID~e~~ld~-----~~a~~lGvdl~rll 109 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAF--IDAEHALDP-----EYAESLGVDLDRLL 109 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEE--EESSS---H-----HHHHHTT--GGGEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEE--ecCcccchh-----hHHHhcCccccceE
Confidence 34555554 2334557999999999999999999887 44444455778 887665543 334444443322
Q ss_pred --CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILYEK-RYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~ 439 (501)
++.+.++....+...++.. .-++|+|.+..
T Consensus 110 v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 110 VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred EecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 3456677777777777654 45899999765
No 450
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.19 E-value=0.016 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++.|.|++|+|||+++..+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHH
Confidence 37899999999999999988776
No 451
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.032 Score=51.36 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=67.4
Q ss_pred cccccccccccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHH
Q 010799 125 ENVDSAKKTGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRE 202 (501)
Q Consensus 125 ~~~~~~~~~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~ 202 (501)
+......-..++|.+..++.|++--.. .+..-.-+-.||..|.||++|++.+++ +..+..-..+ -|.+. +
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--EV~k~----d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--EVDKE----D 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--EEcHH----H
Confidence 334444567899999988888764331 112334567899999999999999985 2323322222 22111 1
Q ss_pred HHHHHHHHhcCCCCcCcchHHHHHHHHcc--CCeEEEEEecCC---ChhHHHHHhhcCCCC
Q 010799 203 LVTDILKQVGGSKVEKQLDPQKKLRKLFT--ENRYLVVIINAR---TPDIWDILKYLFPNS 258 (501)
Q Consensus 203 l~~~i~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~~~~~ 258 (501)
......|.+.|+ ..||.|..||+. ..+.++.|+..+..+
T Consensus 124 -----------------l~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 124 -----------------LATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred -----------------HhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 111344555553 578999999984 355688888887643
No 452
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.047 Score=54.01 Aligned_cols=122 Identities=14% Similarity=0.047 Sum_probs=70.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccccc-------------------ccceeEEEEc
Q 010799 134 GILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKE-------------------YFQCRAWVPV 194 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~-------------------~F~~~~wv~v 194 (501)
.++|-+....++..+..........+-++|++|+||||+|..+.+.---.. ..+-...+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777788888888875442333588999999999999888764211000 0111222222
Q ss_pred CCCCC---HHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799 195 PEELE---RRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ 269 (501)
Q Consensus 195 s~~~~---~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr 269 (501)
|.... ..+.++++.+.+..... .++.-+++||++.. .+.-+.+...+..-...+.+|++|.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 22222 23333333333322211 25667888999875 3334556666655567788888886
No 453
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.041 Score=50.58 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.-.+...+-.++-++++|+--+ ......+...+... ...+..||++|.+......+.
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH-AEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HHCCCEEEEEecChhhhccCC
Confidence 3444555556677999999764 22233343333321 123678999999887776664
No 454
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.18 E-value=0.0066 Score=57.61 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS 370 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~ 370 (501)
-.+|...+.....+..+|+|+|.||+|||||.-.+..+.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 345666666667788899999999999999998877743
No 455
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.18 E-value=0.026 Score=59.85 Aligned_cols=98 Identities=10% Similarity=0.160 Sum_probs=54.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhccccccccc-c-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYF-Q-CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR 234 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr 234 (501)
..+-|+|..|+|||.|++.+.+.. ...+ . ..+++ +..++..++...+... ....+++.+++ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a--~~~~~g~~V~Yi------taeef~~el~~al~~~-------~~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA--RRLYPGTRVRYV------SSEEFTNEFINSIRDG-------KGDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEe------eHHHHHHHHHHHHHhc-------cHHHHHHHhhc-C
Confidence 458899999999999999999643 2222 1 22333 4455665655554321 12334444443 2
Q ss_pred EEEEEecCCC---hhHHHH-HhhcCCC-CCCCcEEEEEecc
Q 010799 235 YLVVIINART---PDIWDI-LKYLFPN-SSNGSRVILSFQE 270 (501)
Q Consensus 235 ~LlVlDdv~~---~~~~~~-l~~~~~~-~~~gs~iivTtr~ 270 (501)
=+|+|||+.. .+.|.. +...+.. ...|..||+||..
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 4788999853 233322 2222211 1235568887764
No 456
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.045 Score=56.68 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=37.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999997542 235577899999999999988753
No 457
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.17 E-value=0.094 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.++|+||+|+|||||-+.++.
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 4799999999999999999977
No 458
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.045 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++++|+.|+||||++..++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999998887
No 459
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0056 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHcc
Q 010799 348 LISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
+|+|.|++|+||||+|+.++.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999884
No 460
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.16 E-value=0.054 Score=51.92 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE---cCCCCCHHHHHHHHHHHhcCCCCc
Q 010799 141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP---VPEELERRELVTDILKQVGGSKVE 217 (501)
Q Consensus 141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~---vs~~~~~~~l~~~i~~~~~~~~~~ 217 (501)
..+.++..|... ....-++|+|..|+|||||.+.+.... ......+++. +..--...++...+ ..+....-.
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHHh-ccccccccc
Confidence 445555555543 245789999999999999999998422 2222222221 11000122332111 111111000
Q ss_pred C------cchHHHHHHHHcc-CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799 218 K------QLDPQKKLRKLFT-ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC 276 (501)
Q Consensus 218 ~------~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~ 276 (501)
. ...-..-+...+. -..-+|++|.+...+.+..+...+. .|..||+||.+.++...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 0001222333333 4667899999988887777666553 47789999998877554
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.017 Score=51.88 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=60.4
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhcc--CCCC--C-----------C
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQ--DEVD--E-----------E 411 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~--~~~~--~-----------~ 411 (501)
.+++|.|+.|+|||||++.++.. .. ...+.+. +.-........-.......+.. +... . .
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~--~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL--EE-PDSGSIL--IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEE--ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 59999999999999999998762 21 1233232 1110000000000000011100 0000 0 1
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 412 SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
+.-+...-.+...+..++-++++|+--. ......+...+.......+..+|++|.+......+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 1123334445566666778999999654 22233343433331011257899999887766543
No 462
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.18 Score=48.65 Aligned_cols=151 Identities=9% Similarity=0.062 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
...++|...+..+ .-++...++|+.|+||+++|..++...-... ...|..| .....+|+.. +.+...
T Consensus 4 ~~~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~---~~~~HPD~~~--------i~p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI---SQKIHPDIHE--------FSPQGK 71 (290)
T ss_pred HHHHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH---hcCCCCCEEE--------EecCCC
Confidence 3456666666432 3346788999999999999998876321110 1111111 0000000000 000000
Q ss_pred CCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcc
Q 010799 409 DEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFL 480 (501)
Q Consensus 409 ~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~ 480 (501)
......+++ ..+.+.+. +..-++|+|+++. .+.++.|+..+-. .+.++..|++|.+. .+...+.+.-..
T Consensus 72 ~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 72 GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRSRSLS 148 (290)
T ss_pred CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHhcceE
Confidence 001122222 22333332 3456888999986 5678899999888 67777777777664 444443334445
Q ss_pred eeCCCC-----ChHHHHHHH
Q 010799 481 HQLRPL-----NEEESGKLF 495 (501)
Q Consensus 481 ~~l~~L-----~~~ea~~Lf 495 (501)
+.++++ +.+++..+.
T Consensus 149 ~~~~~~~~~~i~~~~~~~l~ 168 (290)
T PRK05917 149 IHIPMEEKTLVSKEDIAYLI 168 (290)
T ss_pred EEccchhccCCCHHHHHHHH
Confidence 556543 455555443
No 463
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.14 E-value=0.027 Score=49.19 Aligned_cols=40 Identities=25% Similarity=0.049 Sum_probs=28.0
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE 199 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~ 199 (501)
++.|+|.+|+||||++..+.... ...-...+|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999987532 22334566776665543
No 464
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.14 E-value=0.043 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++.+.|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.13 E-value=0.011 Score=53.59 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=56.5
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-CCCCCCHHHHHHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE-VDEESSLDDLESEFTGIL 425 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~l 425 (501)
..++|.|+.|+||||+++.++. .+.... ..+ .+............. .++.... ...........+.++..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i----~ied~~E~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA--FIPPDE-RII----TIEDTAELQLPHPNW-VRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEE----EECCccccCCCCCCE-EEEEEecCCCCCCCccCHHHHHHHHh
Confidence 6899999999999999998877 333222 111 111111000000000 0000000 000112234556677777
Q ss_pred CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCE-EEEEeCChH
Q 010799 426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSR-VILITREAY 469 (501)
Q Consensus 426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~-iIiTtR~~~ 469 (501)
+..+=.++++++.+.+.+..+ .... .|.. ++.|..-..
T Consensus 98 R~~pd~i~igEir~~ea~~~~-~a~~-----tGh~g~~~T~Ha~s 136 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL-QAMN-----TGHPGGMTTIHANS 136 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH-HHHh-----cCCCCceeeecCCC
Confidence 777889999999987765533 3322 3444 555555444
No 466
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.13 E-value=0.024 Score=53.45 Aligned_cols=94 Identities=7% Similarity=0.054 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcch
Q 010799 142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLD 221 (501)
Q Consensus 142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~ 221 (501)
+..+.++......+...+-++|.+|+|||+||..+.+.-.- .-...+++ +..+++..+-..+.. . ...
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~i------t~~~l~~~l~~~~~~-~---~~~ 152 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLII------TVADIMSAMKDTFSN-S---ETS 152 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEE------EHHHHHHHHHHHHhh-c---ccc
Confidence 34444444332223456789999999999999999874322 11233444 345566555544421 1 111
Q ss_pred HHHHHHHHccCCeEEEEEecCCC--hhHHH
Q 010799 222 PQKKLRKLFTENRYLVVIINART--PDIWD 249 (501)
Q Consensus 222 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~ 249 (501)
...+.+.+. +-=+|||||+-. ...|+
T Consensus 153 -~~~~l~~l~-~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 153 -EEQLLNDLS-NVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred -HHHHHHHhc-cCCEEEEeCCCCCCCCHHH
Confidence 223334454 344888999853 34454
No 467
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.11 E-value=0.051 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||++.++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 5999999999999999999876
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.11 E-value=0.018 Score=57.53 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=65.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..+.|.|+.|+||||+...+.. .+.......++ .+.++.... ... ...+..... .........+.++..++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~---tiEdp~E~~--~~~-~~~~i~q~e-vg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHII---TIEDPIEYV--HRN-KRSLINQRE-VGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEE---EEcCChhhh--ccC-ccceEEccc-cCCCCcCHHHHHHHhhc
Confidence 6899999999999999998877 44444444444 222221110 000 000000000 01122345677888888
Q ss_pred CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
..+=+|++|++.+.+.+...... ...|..++.|.........
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a-----a~tGh~v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA-----AETGHLVFGTLHTNSAAQT 235 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH-----HHcCCcEEEEEcCCCHHHH
Confidence 88999999999987766554443 2346667777766554433
No 469
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.11 E-value=0.019 Score=53.70 Aligned_cols=48 Identities=8% Similarity=-0.093 Sum_probs=35.0
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHH
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELV 204 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~ 204 (501)
+.-.++-|+|.+|+|||+||.++... ....-...+||+.. .++...+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 34678999999999999999888743 22334567899887 66665543
No 470
>CHL00176 ftsH cell division protein; Validated
Probab=96.09 E-value=0.024 Score=61.12 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=53.0
Q ss_pred ccccccchhhHHHHHHHH---hcCC-------CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHH
Q 010799 132 KTGILDLNKEVNKLADFL---IRSH-------SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERR 201 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L---~~~~-------~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~ 201 (501)
-.++.|.++.++++.+.+ ...+ ...+-+-++|.+|+|||+||+.+.+... .+ |+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----H
Confidence 356888877766655544 3211 1244578999999999999999985332 12 333321 1
Q ss_pred HHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCC
Q 010799 202 ELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINAR 243 (501)
Q Consensus 202 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 243 (501)
++.. ...+ .....+...+........++|+|||+.
T Consensus 251 ~f~~----~~~g---~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 251 EFVE----MFVG---VGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred HHHH----Hhhh---hhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 1111 1100 011122334445556677899999984
No 471
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.12 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++++++|++|+||||++..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999998877765
No 472
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.08 E-value=0.056 Score=48.60 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH----HHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR----SVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
+|.|.|++|+||||+|+.++. +. +... ++.+.-..-. .-....+..+..... ..+.+.....+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~--~~-----~~~~--is~~d~lr~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ll~~ 69 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE--NF-----GFTH--LSAGDLLRAEIKSGSENGELIESMIKNGK--IVPSEVTVKLLKN 69 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH--Hc-----CCeE--EECChHHHHHHhcCChHHHHHHHHHHCCC--cCCHHHHHHHHHH
Q ss_pred hcCCc-eEEEEEcCC-CChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799 424 ILYEK-RYLVVLDDV-HSPGAWYDLKRIFSPQASPIGSRVILITREAYVA 471 (501)
Q Consensus 424 ~l~~~-r~LlVlDnv-~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~ 471 (501)
.+... ..-+|||++ .+..+...+...+.. ...-..+|...-.....
T Consensus 70 ~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~--~~~~d~~i~l~~~~~~~ 117 (183)
T TIGR01359 70 AIQADGSKKFLIDGFPRNEENLEAWEKLMDN--KVNFKFVLFFDCPEEVM 117 (183)
T ss_pred HHhccCCCcEEEeCCCCCHHHHHHHHHHHhc--CCCCCEEEEEECCHHHH
No 473
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.079 Score=55.64 Aligned_cols=46 Identities=11% Similarity=-0.043 Sum_probs=36.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|-+..+..|...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 4679999999999999987553 334667899999999999987653
No 474
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.08 E-value=0.0055 Score=63.81 Aligned_cols=46 Identities=2% Similarity=0.063 Sum_probs=39.3
Q ss_pred cccccchhhHHHHHHHHh----cCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLI----RSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~----~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|.++.++++++.|. .-+.+-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 368999999999999993 2344568999999999999999999974
No 475
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.08 E-value=0.016 Score=55.35 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=53.6
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccc---c-ceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------Cc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEY---F-QCRAWVPVPEELERRELVTDILKQVGGSKVE-----------KQ 219 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~---F-~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~~ 219 (501)
.-.+.=|+|.+|+|||.|+.++.-+..+... . ...+|+.-...|....+. +|++..+.+..+ +.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3467889999999999999777533332221 1 357899998889888775 566665433211 01
Q ss_pred ch---HHHHHHHHcc-CCeEEEEEecCC
Q 010799 220 LD---PQKKLRKLFT-ENRYLVVIINAR 243 (501)
Q Consensus 220 ~~---~~~~l~~~l~-~kr~LlVlDdv~ 243 (501)
.+ +...+...+. .+=-|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 11 2333444443 344599999974
No 476
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.07 E-value=0.038 Score=51.61 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=32.9
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~ 388 (501)
.|.+.|..+=....++.|.|.+|+|||++|.+++. .....=..++| ++...
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y--~s~e~ 54 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMY--ISLEE 54 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCC
Confidence 34444533334457999999999999999999876 32222234556 65543
No 477
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.0097 Score=55.13 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=58.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--EESSLDDLESEFTG 423 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~ 423 (501)
.+.+.|+|+.|.||||+.+.+...... .+-....| +.. .. ...+.++...+...... ..+....-.+++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~----a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP----ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE----cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 489999999999999999887631111 11111122 100 00 00111111111111110 11122222233333
Q ss_pred hc--CCceEEEEEcCCCChh---h----HHHHHHhcCCCCC-CCCCEEEEEeCChHHHhhc
Q 010799 424 IL--YEKRYLVVLDDVHSPG---A----WYDLKRIFSPQAS-PIGSRVILITREAYVARSF 474 (501)
Q Consensus 424 ~l--~~~r~LlVlDnv~~~~---~----~~~l~~~l~~~~~-~~~~~iIiTtR~~~~~~~~ 474 (501)
.+ ...+.|++||+....- + ...+...+.. . ..+..+|+||.+..+....
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~--~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK--RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEcChHHHHHhh
Confidence 33 2568899999986521 1 1223333333 2 2245899999998877654
No 478
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.06 E-value=0.39 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.061 Sum_probs=18.8
Q ss_pred eeEEEEEeeCChhhHHHHhhhh
Q 010799 156 LFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
-+++.++|.+|+||||++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999877664
No 479
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.012 Score=53.74 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=24.9
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN 375 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~ 375 (501)
.++.+|+|.|.+|+||||+|+.++. .+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 4457999999999999999999988 55433
No 480
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.063 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.++++++|+.|+||||++..++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999888776
No 481
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.05 E-value=0.11 Score=52.55 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred ceeecchhHHHHHHHh-hcC----C--CCceEEEEEecCCCChHHHHHHHHcccc
Q 010799 324 AVVSMENDILKLAKLT-LNS----S--DKNFLISVAGAAGSGKTALVKTIYESSY 371 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L-~~~----~--~~~~~v~I~G~gGvGKT~LA~~~~~~~~ 371 (501)
|=.|..+-++++.+.+ ... . ...--++|.|-|-+|||+|...+..+.+
T Consensus 149 Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR 203 (444)
T COG1160 149 HGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER 203 (444)
T ss_pred hccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce
Confidence 3446667777777775 211 1 1357899999999999999999987543
No 482
>PRK14974 cell division protein FtsY; Provisional
Probab=96.04 E-value=0.047 Score=54.02 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++.++.++|++|+||||++..++.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999998877766
No 483
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.04 E-value=0.026 Score=54.67 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=45.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
+.++++|+|++|+||||++..++........-..+.. +.+.... .....+......+..+.. ...+..++.+.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~l--i~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVAL--ITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEE--EECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHH
Confidence 4569999999999999999888762221211123444 4443211 122233333444443322 23344455555554
Q ss_pred hcCCceEEEEEcCC
Q 010799 424 ILYEKRYLVVLDDV 437 (501)
Q Consensus 424 ~l~~~r~LlVlDnv 437 (501)
+ .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 4 22 346777753
No 484
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.03 E-value=0.0053 Score=55.55 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=57.2
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHh
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQDEVD--EESSLDDLESEFTGI 424 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~ 424 (501)
++.|+|+.|.||||+.+.+.-. ....+..+.+| +.+.+. .+.++...+...... ..+....-..++...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~-~~la~~G~~v~a~~~~~~-------~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~ 72 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI-VIMAQIGSFVPAESAELP-------VFDRIFTRIGASDSLAQGLSTFMVEMKETANI 72 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH-HHHHHhCCCeeehheEec-------ccceEEEEeCCCCchhccccHHHHHHHHHHHH
Confidence 4679999999999999988732 11122222121 000000 000111111111000 111222223344555
Q ss_pred cCC--ceEEEEEcCCCCh---hhH----HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 425 LYE--KRYLVVLDDVHSP---GAW----YDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 425 l~~--~r~LlVlDnv~~~---~~~----~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+.. ++-|+++|+.-.. .+- ..+...+.. ..++.+|++|....+...+.
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHHHHHHhh
Confidence 544 7889999998641 111 222232222 23678999999888766553
No 485
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.03 E-value=0.024 Score=56.24 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=45.0
Q ss_pred HHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc---c-ccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799 148 FLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK---E-YFQCRAWVPVPEELERRELVTDILKQVGGS 214 (501)
Q Consensus 148 ~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~ 214 (501)
+|..+=+.-.++=|.|.+|+|||+|+.++.-..... . .-...+||.....|....+.+ +++.++.+
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 343332355788899999999999998875322221 1 124678999999999888765 56666543
No 486
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.04 Score=49.91 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 421 FTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 421 l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+.+.+.-++=+|.+|+--+ ...++++...|.. ...|+|-|.+-.-+..++
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-----~yTIviVTHnmqQAaRvS 215 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIVIVTHNMQQAARVS 215 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-----ccEEEEEeCCHHHHHHHh
Confidence 3444445666888998654 2345566655555 778999999888777665
No 487
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.03 E-value=0.028 Score=59.18 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=33.7
Q ss_pred ccccccchhhHHHHHHHHh---cC-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLI---RS-------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++++.+++. .. ....+-+-++|++|+|||+||+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4578898877766655443 11 112344778999999999999999854
No 488
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.03 E-value=0.026 Score=57.31 Aligned_cols=47 Identities=28% Similarity=0.291 Sum_probs=35.2
Q ss_pred ccceeecchhHHHHHHHhhc---------CCC-------CceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLN---------SSD-------KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~---------~~~-------~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...++|.++..+.+...+.+ ... ....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 35579999999988665521 011 125799999999999999999987
No 489
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.042 Score=49.96 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=58.6
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E----------E-EEeCCCCC---hHHHHHHHHHHhccCCCCCC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A----------N-VYVSQDFD---MRSVFADILRQLTQDEVDEE 411 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~----------~-v~~~~~~~---~~~~~~~i~~~l~~~~~~~~ 411 (501)
.+++|.|+.|+|||||++.++..... ....+.++ + . ..+.+... ...+...+....... ..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~L 109 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---GL 109 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh---cC
Confidence 69999999999999999998852100 00111111 0 0 11111111 112223322111000 12
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 412 SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
+.-+...-.+.+.+..++-++++|+--. ......+...+... ...+..||++|.+..
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-ADSGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH-HHcCCEEEEEEcCCh
Confidence 2223334445555666778899999654 22223333333321 123678899988865
No 490
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.02 E-value=0.036 Score=51.19 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHccCCeEEEEEecCCCh---hHHHHHhhcCCC--CCCCcEEEEEeccccchhcc
Q 010799 225 KLRKLFTENRYLVVIINARTP---DIWDILKYLFPN--SSNGSRVILSFQEADAARCR 277 (501)
Q Consensus 225 ~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~~~--~~~gs~iivTtr~~~va~~~ 277 (501)
.+.+.|-...-+|+.|+-... +.=+.+...+.. ...|..||+.|.+..+|..|
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 456667777778889986531 111222222222 24588899999999999843
No 491
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.01 E-value=0.057 Score=56.42 Aligned_cols=160 Identities=12% Similarity=0.145 Sum_probs=84.9
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ 402 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~ 402 (501)
..++|....+.++.+.+..-......+.|.|.+|+||+++|+.+... ........+- +++..- ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~--~~~~~~~~~~--~~c~~~--~~~~~~~~l-- 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRH--SPRANGPFIA--LNMAAI--PKDLIESEL-- 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHh--CCCCCCCeEE--EeCCCC--CHHHHHHHh--
Confidence 35888888888887777544444467889999999999999988762 1111122223 444332 122222222
Q ss_pred hccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChHH
Q 010799 403 LTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAYV 470 (501)
Q Consensus 403 l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~~ 470 (501)
.+.... ...... .....+-....-.|+||+++. ...+..|...+.... .....+||.||.....
T Consensus 206 -fg~~~~~~~~~~~---~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~ 281 (463)
T TIGR01818 206 -FGHEKGAFTGANT---RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE 281 (463)
T ss_pred -cCCCCCCCCCccc---CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH
Confidence 111110 000000 000111112234588999986 455566666655410 0124588888764421
Q ss_pred ------------HhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799 471 ------------ARSFSPSIFLHQLRPLN--EEESGKLFQ 496 (501)
Q Consensus 471 ------------~~~~~~~~~~~~l~~L~--~~ea~~Lf~ 496 (501)
...+ ....+.++||. .+|-..|..
T Consensus 282 ~~~~~~~f~~~L~~rl--~~~~i~lPpLr~R~~Di~~l~~ 319 (463)
T TIGR01818 282 ALVRQGKFREDLFHRL--NVIRIHLPPLRERREDIPRLAR 319 (463)
T ss_pred HHHHcCCcHHHHHHHh--CcceecCCCcccchhhHHHHHH
Confidence 1111 24588899998 566655544
No 492
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.00 E-value=0.0055 Score=51.42 Aligned_cols=21 Identities=43% Similarity=0.737 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHcc
Q 010799 349 ISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 349 v~I~G~gGvGKT~LA~~~~~~ 369 (501)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 493
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.00 E-value=0.014 Score=57.74 Aligned_cols=23 Identities=9% Similarity=-0.283 Sum_probs=20.7
Q ss_pred eEEEEEeeCChhhHHHHhhhhcc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.-+.++|..|+|||.||..+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 66899999999999999999863
No 494
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.021 Score=51.17 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=48.3
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE--eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY--VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL 425 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 425 (501)
.|.|.|++|+||||+|+.+..... -.|.+.-.| .. .... ..+-..+...+....- -+-+-....+..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~--~r~~~~~~---t~lg~~~k~~i~~g~l---v~d~i~~~~v~~rl 72 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDI--LRAAIAER---TELGEEIKKYIDKGEL---VPDEIVNGLVKERL 72 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHH--hHhhhccC---ChHHHHHHHHHHcCCc---cchHHHHHHHHHHH
Confidence 478999999999999999988411 122221111 11 1111 2233333332332221 11122234444444
Q ss_pred CC---ceEEEEEcCCCC-hhhHHHHHHhcCC
Q 010799 426 YE---KRYLVVLDDVHS-PGAWYDLKRIFSP 452 (501)
Q Consensus 426 ~~---~r~LlVlDnv~~-~~~~~~l~~~l~~ 452 (501)
.. .. .+|+|++-. ..++..+...+..
T Consensus 73 ~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 73 DEADCKA-GFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred HhhcccC-eEEEeCCCCcHHHHHHHHHHHHH
Confidence 33 24 889999865 4555555555444
No 495
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.21 Score=51.03 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccC------------C-cc-ceeEEEEe----------CCCCChHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN------------F-PC-RAWANVYV----------SQDFDMRSVFADI 399 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------------f-~~-~~w~~v~~----------~~~~~~~~~~~~i 399 (501)
+--..++++|..|.||||+-+.+..+.+-... | .. +-| ... +.+--...-++.-
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~--l~~~v~~vd~~~~~~pG~~~ee~r~h 465 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF--LDKNVNAVDFMEKSFPGKTEEEIRRH 465 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH--HHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence 33357899999999999998888775431111 1 11 112 110 0000112222233
Q ss_pred HHHhccCCCCC------CCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799 400 LRQLTQDEVDE------ESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYV 470 (501)
Q Consensus 400 ~~~l~~~~~~~------~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~ 470 (501)
+..++.+.+.. .+.-+...=.+....-.++-|||||+--+ .+.+++|...+.. -.|. ||+.|.+..+
T Consensus 466 l~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~---F~GG-Vv~VSHd~~f 541 (582)
T KOG0062|consen 466 LGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN---FNGG-VVLVSHDEEF 541 (582)
T ss_pred HHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHh---cCCc-EEEEECcHHH
Confidence 33333333221 11122223334444446788999999765 4667788888887 3444 5555666655
Q ss_pred Hhhc
Q 010799 471 ARSF 474 (501)
Q Consensus 471 ~~~~ 474 (501)
....
T Consensus 542 i~~~ 545 (582)
T KOG0062|consen 542 ISSL 545 (582)
T ss_pred Hhhc
Confidence 4443
No 496
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.037 Score=49.73 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.|.++|.||+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4688999999999999999987
No 497
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.99 E-value=0.0044 Score=55.62 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=40.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY 235 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 235 (501)
-.-+.++|.+|+|||.||..+.+.. +...+.+ .|+ +..+++..+-..- .. .. ...+.+.+.+ -=
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v-~f~------~~~~L~~~l~~~~----~~--~~-~~~~~~~l~~-~d 110 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGYSV-LFI------TASDLLDELKQSR----SD--GS-YEELLKRLKR-VD 110 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT--E-EEE------EHHHHHHHHHCCH----CC--TT-HCHHHHHHHT-SS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcce-eEe------ecCceeccccccc----cc--cc-hhhhcCcccc-cc
Confidence 3568899999999999999998632 2233433 444 3455555543221 11 11 1222333433 34
Q ss_pred EEEEecCCC
Q 010799 236 LVVIINART 244 (501)
Q Consensus 236 LlVlDdv~~ 244 (501)
||||||+-.
T Consensus 111 lLilDDlG~ 119 (178)
T PF01695_consen 111 LLILDDLGY 119 (178)
T ss_dssp CEEEETCTS
T ss_pred Eecccccce
Confidence 788999854
No 498
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.021 Score=53.81 Aligned_cols=117 Identities=17% Similarity=0.072 Sum_probs=71.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC-----CCCHHHHHHHHHHHhcCCCCc-----Ccc---hH
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE-----ELERRELVTDILKQVGGSKVE-----KQL---DP 222 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~-----~~~~~~l~~~i~~~~~~~~~~-----~~~---~~ 222 (501)
-.++++||-+|+|||||++.+. ...+.-...++..-.+ .....+-..++++.++..... .+. ..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4689999999999999999997 3333333333332111 223345566777776643211 111 12
Q ss_pred -HHHHHHHccCCeEEEEEecCCChhH------HHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799 223 -QKKLRKLFTENRYLVVIINARTPDI------WDILKYLFPNSSNGSRVILSFQEADAARC 276 (501)
Q Consensus 223 -~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtr~~~va~~ 276 (501)
.-.+.+.|.-+--|||.|..-+.-+ .-.+...+.. ..|-..+..|.+..|++.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhh
Confidence 2346677788888999999654322 2222233322 347779999999999873
No 499
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.062 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHcc
Q 010799 347 FLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.+++|.|+.|+|||||.+.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999998763
No 500
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.98 E-value=0.14 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.++++++|++|+||||++..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3458999999999999998887766
Done!