Query 010799
Match_columns 501
No_of_seqs 357 out of 3493
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.3E-24 1.1E-28 226.5 13.4 149 136-290 131-301 (549)
2 2a5y_B CED-4; apoptosis; HET: 99.9 7.8E-24 2.7E-28 223.7 15.8 165 326-500 131-307 (549)
3 1vt4_I APAF-1 related killer D 99.8 3.5E-20 1.2E-24 200.6 12.9 163 325-500 130-312 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.8 7E-20 2.4E-24 211.9 16.5 169 321-500 122-300 (1249)
5 1vt4_I APAF-1 related killer D 99.8 1.3E-20 4.6E-25 203.9 9.5 149 135-291 130-307 (1221)
6 1z6t_A APAF-1, apoptotic prote 99.8 5.3E-19 1.8E-23 188.8 14.4 165 322-500 123-300 (591)
7 3sfz_A APAF-1, apoptotic pepti 99.8 8.8E-19 3E-23 202.6 12.7 139 130-275 121-271 (1249)
8 1z6t_A APAF-1, apoptotic prote 99.7 1.1E-17 3.8E-22 178.6 11.6 138 131-276 122-272 (591)
9 1w5s_A Origin recognition comp 99.4 1.2E-12 4.1E-17 133.0 12.0 173 323-499 22-228 (412)
10 2v1u_A Cell division control p 99.3 8.1E-12 2.8E-16 125.5 14.8 173 323-499 19-214 (387)
11 2qby_B CDC6 homolog 3, cell di 99.3 4.5E-12 1.5E-16 127.5 12.9 171 323-499 20-210 (384)
12 2qby_A CDC6 homolog 1, cell di 99.3 5.3E-12 1.8E-16 126.8 10.9 172 323-499 20-210 (386)
13 2qen_A Walker-type ATPase; unk 99.3 1.1E-11 3.8E-16 122.7 12.0 162 322-498 11-215 (350)
14 1fnn_A CDC6P, cell division co 99.3 3.1E-11 1.1E-15 121.4 15.5 171 323-499 17-206 (389)
15 2fna_A Conserved hypothetical 99.2 5.8E-11 2E-15 117.8 14.0 162 322-499 12-222 (357)
16 2chg_A Replication factor C sm 99.1 4.6E-10 1.6E-14 103.2 14.2 156 322-499 16-174 (226)
17 1njg_A DNA polymerase III subu 99.1 4.2E-10 1.4E-14 104.9 13.4 166 322-499 22-198 (250)
18 3te6_A Regulatory protein SIR3 99.0 6.3E-10 2.1E-14 107.7 10.3 176 323-500 20-212 (318)
19 1w5s_A Origin recognition comp 99.0 3.6E-10 1.2E-14 114.6 8.6 143 132-274 21-192 (412)
20 3pxi_A Negative regulator of g 99.0 1.6E-09 5.6E-14 118.5 13.8 153 323-499 491-675 (758)
21 3qfl_A MLA10; coiled-coil, (CC 99.0 3.2E-09 1.1E-13 86.7 11.3 72 5-76 1-83 (115)
22 1sxj_B Activator 1 37 kDa subu 99.0 2.5E-09 8.7E-14 104.5 11.4 156 322-499 20-179 (323)
23 1r6b_X CLPA protein; AAA+, N-t 98.9 2.6E-08 8.9E-13 109.1 18.9 45 132-178 185-229 (758)
24 3cf2_A TER ATPase, transitiona 98.9 4E-08 1.4E-12 106.1 17.0 155 322-499 476-661 (806)
25 2qby_B CDC6 homolog 3, cell di 98.8 6.7E-09 2.3E-13 104.2 9.4 139 133-272 20-175 (384)
26 1qvr_A CLPB protein; coiled co 98.8 3.3E-08 1.1E-12 109.4 13.9 46 132-179 169-214 (854)
27 1jbk_A CLPB protein; beta barr 98.8 3.7E-09 1.3E-13 94.6 4.7 149 322-495 21-194 (195)
28 1iqp_A RFCS; clamp loader, ext 98.8 1.3E-08 4.6E-13 99.5 8.6 153 322-499 24-182 (327)
29 2qen_A Walker-type ATPase; unk 98.7 1E-08 3.5E-13 101.2 6.6 130 132-273 11-176 (350)
30 1fnn_A CDC6P, cell division co 98.7 9.6E-08 3.3E-12 95.7 13.2 141 132-273 16-171 (389)
31 1ypw_A Transitional endoplasmi 98.7 3.1E-08 1.1E-12 108.5 10.0 155 322-499 476-661 (806)
32 2qby_A CDC6 homolog 1, cell di 98.7 1.7E-08 5.9E-13 100.9 7.4 141 132-274 19-176 (386)
33 2v1u_A Cell division control p 98.7 4.8E-08 1.6E-12 97.8 10.6 141 132-272 18-178 (387)
34 2chq_A Replication factor C sm 98.7 4.7E-08 1.6E-12 95.2 9.8 151 322-499 16-174 (319)
35 2fna_A Conserved hypothetical 98.6 3.6E-08 1.2E-12 97.5 7.8 130 132-273 12-182 (357)
36 1jr3_A DNA polymerase III subu 98.6 1.4E-07 4.8E-12 94.1 12.0 166 322-499 15-191 (373)
37 3h4m_A Proteasome-activating n 98.6 1.2E-07 4E-12 91.0 10.7 157 321-500 15-202 (285)
38 1njg_A DNA polymerase III subu 98.6 1.5E-07 5.3E-12 87.2 10.3 133 132-272 22-167 (250)
39 3syl_A Protein CBBX; photosynt 98.6 2.6E-07 9.1E-12 89.6 11.5 155 324-499 32-217 (309)
40 3pvs_A Replication-associated 98.5 1.6E-07 5.4E-12 95.8 9.1 147 321-499 24-178 (447)
41 2chg_A Replication factor C sm 98.5 5.7E-07 1.9E-11 82.2 12.1 124 132-271 16-142 (226)
42 2z4s_A Chromosomal replication 98.5 3.7E-07 1.3E-11 93.1 11.5 158 321-499 103-276 (440)
43 3uk6_A RUVB-like 2; hexameric 98.5 8.9E-07 3E-11 88.1 13.6 48 322-369 43-93 (368)
44 2qz4_A Paraplegin; AAA+, SPG7, 98.5 7E-07 2.4E-11 84.3 12.1 155 322-499 5-190 (262)
45 1sxj_E Activator 1 40 kDa subu 98.5 3.2E-07 1.1E-11 90.8 9.5 166 322-499 13-206 (354)
46 3u61_B DNA polymerase accessor 98.5 7.5E-07 2.6E-11 87.0 11.9 145 322-494 25-173 (324)
47 3bos_A Putative DNA replicatio 98.4 2.1E-07 7.2E-12 86.4 6.5 145 322-499 27-187 (242)
48 1sxj_D Activator 1 41 kDa subu 98.4 6.8E-07 2.3E-11 88.3 10.5 167 322-499 36-205 (353)
49 4b4t_J 26S protease regulatory 98.4 2.9E-06 1E-10 84.1 14.1 156 321-499 146-332 (405)
50 3eie_A Vacuolar protein sortin 98.4 2.4E-06 8.2E-11 83.4 13.4 157 321-500 16-198 (322)
51 3cf0_A Transitional endoplasmi 98.4 4.9E-06 1.7E-10 80.4 15.4 156 321-499 13-199 (301)
52 3pfi_A Holliday junction ATP-d 98.4 9.5E-07 3.3E-11 86.8 10.5 148 321-499 27-197 (338)
53 1hqc_A RUVB; extended AAA-ATPa 98.4 6.4E-07 2.2E-11 87.4 9.1 148 322-499 11-181 (324)
54 3n70_A Transport activator; si 98.4 1.6E-06 5.6E-11 74.0 9.5 113 324-468 2-116 (145)
55 2gno_A DNA polymerase III, gam 98.3 2.9E-06 9.8E-11 81.9 12.0 147 327-499 1-152 (305)
56 1l8q_A Chromosomal replication 98.3 1.2E-06 4E-11 85.7 9.3 154 322-499 10-179 (324)
57 2p65_A Hypothetical protein PF 98.3 3.5E-07 1.2E-11 81.2 5.1 45 322-368 21-65 (187)
58 4b4t_H 26S protease regulatory 98.3 8.3E-06 2.8E-10 82.0 15.3 156 321-499 207-393 (467)
59 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.9E-05 6.5E-10 77.0 17.4 157 321-499 10-192 (322)
60 1d2n_A N-ethylmaleimide-sensit 98.3 2.7E-06 9.4E-11 80.8 11.2 152 324-497 34-210 (272)
61 1sxj_A Activator 1 95 kDa subu 98.3 1.4E-06 4.7E-11 90.8 9.8 160 322-499 38-222 (516)
62 1sxj_C Activator 1 40 kDa subu 98.3 4.3E-06 1.5E-10 82.2 12.5 156 322-499 24-182 (340)
63 1a5t_A Delta prime, HOLB; zinc 98.3 8.2E-06 2.8E-10 80.0 14.3 157 329-498 8-179 (334)
64 4b4t_M 26S protease regulatory 98.3 2.4E-06 8.1E-11 86.0 10.5 157 320-499 178-365 (434)
65 4b4t_L 26S protease subunit RP 98.3 5.2E-06 1.8E-10 83.6 12.9 156 321-499 179-365 (437)
66 2qp9_X Vacuolar protein sortin 98.3 9E-06 3.1E-10 80.4 14.1 156 321-499 49-230 (355)
67 3pxg_A Negative regulator of g 98.3 1.9E-06 6.5E-11 88.6 9.3 148 323-499 180-338 (468)
68 3vfd_A Spastin; ATPase, microt 98.3 8.3E-06 2.8E-10 81.8 13.8 155 321-499 113-295 (389)
69 1sxj_B Activator 1 37 kDa subu 98.2 2E-06 6.7E-11 83.7 8.0 124 132-271 20-147 (323)
70 3b9p_A CG5977-PA, isoform A; A 98.2 1.8E-05 6.3E-10 76.0 14.7 153 321-499 19-202 (297)
71 3hu3_A Transitional endoplasmi 98.2 4.7E-06 1.6E-10 85.7 10.7 155 322-499 203-385 (489)
72 4b4t_I 26S protease regulatory 98.2 6.5E-06 2.2E-10 82.0 11.0 157 320-499 179-366 (437)
73 1qvr_A CLPB protein; coiled co 98.2 3.9E-06 1.3E-10 92.9 10.5 154 322-498 169-344 (854)
74 2zan_A Vacuolar protein sortin 98.2 2.5E-05 8.5E-10 79.6 15.7 157 321-499 132-314 (444)
75 3d8b_A Fidgetin-like protein 1 98.2 4.9E-06 1.7E-10 82.4 10.2 155 321-499 82-264 (357)
76 1lv7_A FTSH; alpha/beta domain 98.2 8.6E-06 2.9E-10 76.6 11.4 156 321-499 10-195 (257)
77 2bjv_A PSP operon transcriptio 98.2 6.1E-06 2.1E-10 78.0 10.1 47 322-368 5-51 (265)
78 1ojl_A Transcriptional regulat 98.1 1.6E-05 5.5E-10 76.8 11.4 160 323-496 2-187 (304)
79 3co5_A Putative two-component 98.1 3E-06 1E-10 72.1 5.5 46 323-368 4-49 (143)
80 4fcw_A Chaperone protein CLPB; 98.1 1.1E-05 3.6E-10 78.2 10.0 166 323-499 17-229 (311)
81 1r6b_X CLPA protein; AAA+, N-t 98.1 5.9E-05 2E-09 82.4 16.5 156 322-498 185-361 (758)
82 4b4t_K 26S protease regulatory 98.1 1.4E-05 4.8E-10 80.3 10.2 155 321-498 170-356 (428)
83 2w58_A DNAI, primosome compone 98.0 3.6E-06 1.2E-10 76.0 5.3 125 322-468 24-159 (202)
84 3te6_A Regulatory protein SIR3 98.0 2.2E-05 7.6E-10 75.8 10.9 110 134-244 21-143 (318)
85 1iqp_A RFCS; clamp loader, ext 98.0 8.6E-06 3E-10 79.2 7.7 124 132-271 24-150 (327)
86 2ce7_A Cell division protein F 98.0 2.2E-05 7.6E-10 80.2 10.6 156 321-499 14-199 (476)
87 3pxi_A Negative regulator of g 98.0 1.2E-05 3.9E-10 88.0 8.9 147 323-498 180-337 (758)
88 1ofh_A ATP-dependent HSL prote 98.0 2.1E-05 7.1E-10 75.9 9.7 46 323-368 15-72 (310)
89 2r62_A Cell division protease 98.0 4.9E-06 1.7E-10 78.8 5.0 156 321-499 9-196 (268)
90 3ec2_A DNA replication protein 98.0 1.8E-05 6.1E-10 70.0 8.2 124 323-468 10-143 (180)
91 1jbk_A CLPB protein; beta barr 98.0 7.7E-06 2.6E-10 72.6 5.6 46 132-179 21-66 (195)
92 1tf7_A KAIC; homohexamer, hexa 97.9 2.9E-05 9.9E-10 81.0 10.4 24 345-368 280-303 (525)
93 2c9o_A RUVB-like 1; hexameric 97.9 7.7E-05 2.6E-09 76.3 12.7 48 322-369 36-86 (456)
94 3cf2_A TER ATPase, transitiona 97.9 6.9E-05 2.4E-09 81.0 12.3 156 321-499 202-385 (806)
95 3ec2_A DNA replication protein 97.8 1.3E-05 4.5E-10 70.9 5.1 118 139-271 20-143 (180)
96 3syl_A Protein CBBX; photosynt 97.8 2.9E-05 9.8E-10 75.0 7.9 124 134-272 32-180 (309)
97 3co5_A Putative two-component 97.8 2.9E-05 9.8E-10 66.0 6.1 47 133-179 4-50 (143)
98 2kjq_A DNAA-related protein; s 97.8 2.3E-05 7.8E-10 67.1 5.2 24 345-368 35-58 (149)
99 1jr3_A DNA polymerase III subu 97.8 9.9E-05 3.4E-09 73.2 10.4 46 133-179 16-61 (373)
100 2cvh_A DNA repair and recombin 97.7 0.00011 3.8E-09 66.9 9.7 98 334-439 8-116 (220)
101 2chq_A Replication factor C sm 97.7 5.8E-05 2E-09 73.0 8.1 121 132-271 16-142 (319)
102 3n70_A Transport activator; si 97.7 9.8E-05 3.4E-09 62.8 8.1 46 134-179 2-47 (145)
103 3m6a_A ATP-dependent protease 97.7 8.6E-05 2.9E-09 77.6 8.5 162 323-499 81-266 (543)
104 2w58_A DNAI, primosome compone 97.6 3.1E-05 1.1E-09 69.8 4.3 122 133-270 25-158 (202)
105 3h4m_A Proteasome-activating n 97.6 8.6E-05 2.9E-09 70.8 7.4 48 132-179 16-74 (285)
106 2r44_A Uncharacterized protein 97.6 0.00027 9.2E-09 68.9 10.2 153 322-499 26-198 (331)
107 1ixz_A ATP-dependent metallopr 97.6 0.00033 1.1E-08 65.5 10.3 156 321-499 14-199 (254)
108 3u61_B DNA polymerase accessor 97.6 0.00027 9.3E-09 68.6 10.0 120 132-272 25-147 (324)
109 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00057 1.9E-08 70.2 12.6 152 321-499 29-214 (499)
110 1sxj_D Activator 1 41 kDa subu 97.5 0.00013 4.6E-09 71.6 7.4 134 132-270 36-172 (353)
111 3t15_A Ribulose bisphosphate c 97.5 0.00083 2.9E-08 64.3 12.1 25 344-368 34-58 (293)
112 3uk6_A RUVB-like 2; hexameric 97.5 0.00036 1.2E-08 69.0 9.6 48 132-179 43-93 (368)
113 1iy2_A ATP-dependent metallopr 97.5 0.00099 3.4E-08 63.2 12.3 156 321-499 38-223 (278)
114 3eie_A Vacuolar protein sortin 97.5 0.00044 1.5E-08 67.2 10.0 48 132-179 17-74 (322)
115 1in4_A RUVB, holliday junction 97.4 0.00068 2.3E-08 66.2 11.0 48 321-368 23-73 (334)
116 1sxj_E Activator 1 40 kDa subu 97.4 0.00031 1E-08 69.1 8.5 45 132-178 13-58 (354)
117 2hjg_A GTP-binding protein ENG 97.4 0.00082 2.8E-08 68.2 11.8 44 326-369 150-198 (436)
118 2qgz_A Helicase loader, putati 97.4 0.00012 4E-09 70.8 5.2 47 322-368 123-174 (308)
119 3cf0_A Transitional endoplasmi 97.4 0.00092 3.2E-08 64.2 11.5 95 132-244 14-119 (301)
120 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00072 2.5E-08 65.6 10.8 48 132-179 11-68 (322)
121 2z4s_A Chromosomal replication 97.4 0.00021 7E-09 72.7 7.1 100 156-270 130-236 (440)
122 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00047 1.6E-08 64.6 9.1 48 132-179 5-62 (262)
123 2x8a_A Nuclear valosin-contain 97.4 0.0013 4.6E-08 62.2 12.2 155 321-499 8-191 (274)
124 4dcu_A GTP-binding protein ENG 97.4 0.0009 3.1E-08 68.3 11.8 43 327-369 171-218 (456)
125 1ypw_A Transitional endoplasmi 97.4 0.00098 3.3E-08 72.9 12.6 156 321-499 202-385 (806)
126 1um8_A ATP-dependent CLP prote 97.4 0.00058 2E-08 67.9 9.9 46 323-368 21-94 (376)
127 1d2n_A N-ethylmaleimide-sensit 97.4 0.00034 1.2E-08 66.2 7.9 47 133-179 33-87 (272)
128 2zan_A Vacuolar protein sortin 97.3 0.0013 4.4E-08 66.9 12.2 48 132-179 133-190 (444)
129 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00029 1E-08 68.3 6.4 48 132-179 11-61 (324)
130 3d8b_A Fidgetin-like protein 1 97.2 0.0009 3.1E-08 66.0 9.4 48 132-179 83-140 (357)
131 3pvs_A Replication-associated 97.2 0.0012 4.1E-08 67.0 10.1 46 132-179 25-73 (447)
132 1g5t_A COB(I)alamin adenosyltr 97.2 0.00022 7.5E-09 63.4 3.9 112 347-468 29-163 (196)
133 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00036 1.2E-08 66.8 5.3 69 346-439 123-193 (331)
134 3pxg_A Negative regulator of g 97.1 0.00098 3.3E-08 68.3 8.8 44 133-178 180-223 (468)
135 1u0j_A DNA replication protein 97.1 0.0022 7.7E-08 59.8 10.2 38 331-368 89-126 (267)
136 2qp9_X Vacuolar protein sortin 97.1 0.0015 5.2E-08 64.3 9.5 48 132-179 50-107 (355)
137 2p65_A Hypothetical protein PF 97.1 0.00036 1.2E-08 61.3 4.4 46 132-179 21-66 (187)
138 3pfi_A Holliday junction ATP-d 97.1 0.00099 3.4E-08 65.0 7.6 47 132-178 28-77 (338)
139 2cvh_A DNA repair and recombin 97.0 0.0014 5E-08 59.3 8.0 83 156-244 20-116 (220)
140 3hr8_A Protein RECA; alpha and 97.0 0.0018 6.2E-08 63.4 9.0 98 333-439 47-150 (356)
141 2b8t_A Thymidine kinase; deoxy 97.0 0.00039 1.3E-08 63.5 3.7 111 346-467 12-125 (223)
142 1mky_A Probable GTP-binding pr 97.0 0.0033 1.1E-07 63.8 10.9 43 327-369 152-203 (439)
143 3vfd_A Spastin; ATPase, microt 97.0 0.003 1E-07 63.0 10.3 48 132-179 114-171 (389)
144 3b9p_A CG5977-PA, isoform A; A 97.0 0.0033 1.1E-07 60.0 10.3 48 132-179 20-77 (297)
145 1l8q_A Chromosomal replication 96.9 0.0011 3.8E-08 64.3 6.8 112 143-270 24-140 (324)
146 3io5_A Recombination and repai 96.9 0.0034 1.2E-07 59.9 9.7 83 348-439 30-122 (333)
147 4fcw_A Chaperone protein CLPB; 96.9 0.0012 4E-08 63.6 6.7 46 133-178 17-69 (311)
148 2bjv_A PSP operon transcriptio 96.9 0.0011 3.9E-08 62.2 6.4 47 133-179 6-52 (265)
149 2iw3_A Elongation factor 3A; a 96.9 0.00087 3E-08 73.8 6.2 204 158-367 463-720 (986)
150 2gno_A DNA polymerase III, gam 96.9 0.0039 1.3E-07 59.9 10.1 116 137-270 1-121 (305)
151 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00085 2.9E-08 61.4 5.2 116 346-468 23-168 (235)
152 1xp8_A RECA protein, recombina 96.9 0.0032 1.1E-07 62.0 9.4 98 333-439 60-163 (366)
153 2zr9_A Protein RECA, recombina 96.9 0.0029 9.8E-08 62.0 9.0 98 333-439 47-150 (349)
154 1sxj_A Activator 1 95 kDa subu 96.9 0.0015 5.1E-08 67.8 7.4 48 132-179 38-100 (516)
155 4a74_A DNA repair and recombin 96.8 0.0028 9.5E-08 57.8 8.3 24 345-368 24-47 (231)
156 4gp7_A Metallophosphoesterase; 96.8 0.0018 6.3E-08 56.4 6.6 56 418-474 91-165 (171)
157 1sxj_C Activator 1 40 kDa subu 96.8 0.0043 1.5E-07 60.6 9.8 45 132-178 24-68 (340)
158 1ojl_A Transcriptional regulat 96.8 0.0018 6.1E-08 62.3 6.8 47 133-179 2-48 (304)
159 3hu3_A Transitional endoplasmi 96.7 0.0029 9.8E-08 65.0 8.2 47 133-179 204-261 (489)
160 1v5w_A DMC1, meiotic recombina 96.7 0.0064 2.2E-07 59.4 10.3 104 333-439 109-230 (343)
161 1u94_A RECA protein, recombina 96.7 0.0028 9.7E-08 62.2 7.5 98 333-439 49-152 (356)
162 3ux8_A Excinuclease ABC, A sub 96.7 0.0012 4E-08 71.0 5.0 204 158-363 46-365 (670)
163 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00064 2.2E-08 65.2 2.1 69 156-244 123-193 (331)
164 2z43_A DNA repair and recombin 96.6 0.0071 2.4E-07 58.6 9.6 104 333-439 94-214 (324)
165 3lw7_A Adenylate kinase relate 96.6 0.0057 2E-07 52.9 8.1 102 157-275 2-116 (179)
166 1a5t_A Delta prime, HOLB; zinc 96.6 0.013 4.4E-07 57.0 11.5 116 139-271 8-148 (334)
167 2kjq_A DNAA-related protein; s 96.6 0.0015 5.1E-08 55.7 4.1 25 156-180 36-60 (149)
168 1n0w_A DNA repair protein RAD5 96.6 0.0034 1.2E-07 57.8 6.8 103 334-439 12-130 (243)
169 2qgz_A Helicase loader, putati 96.5 0.00087 3E-08 64.6 2.4 39 141-179 136-175 (308)
170 2ce7_A Cell division protein F 96.5 0.0049 1.7E-07 62.8 7.8 48 132-179 15-72 (476)
171 3lda_A DNA repair protein RAD5 96.5 0.0069 2.4E-07 60.3 8.6 104 333-439 165-284 (400)
172 1pzn_A RAD51, DNA repair and r 96.4 0.0052 1.8E-07 60.2 7.1 122 344-468 129-286 (349)
173 3t15_A Ribulose bisphosphate c 96.3 0.0037 1.3E-07 59.7 5.5 25 155-179 35-59 (293)
174 3jvv_A Twitching mobility prot 96.3 0.0017 5.9E-08 63.7 3.1 114 347-474 124-237 (356)
175 2i1q_A DNA repair and recombin 96.3 0.012 4.1E-07 56.9 9.1 103 334-439 86-215 (322)
176 3hws_A ATP-dependent CLP prote 96.2 0.0035 1.2E-07 61.8 4.7 46 323-368 15-73 (363)
177 3c8u_A Fructokinase; YP_612366 96.2 0.0043 1.5E-07 55.9 4.8 39 330-368 6-44 (208)
178 2cbz_A Multidrug resistance-as 96.1 0.033 1.1E-06 51.2 10.6 22 157-178 32-53 (237)
179 1rz3_A Hypothetical protein rb 96.0 0.0066 2.2E-07 54.4 5.4 41 328-368 3-44 (201)
180 1g8p_A Magnesium-chelatase 38 95.9 0.0038 1.3E-07 61.0 3.6 47 321-369 22-68 (350)
181 2orw_A Thymidine kinase; TMTK, 95.9 0.0013 4.4E-08 58.2 -0.0 22 347-368 4-25 (184)
182 2nq2_C Hypothetical ABC transp 95.9 0.05 1.7E-06 50.5 10.8 22 347-368 32-53 (253)
183 4g1u_C Hemin import ATP-bindin 95.9 0.035 1.2E-06 52.0 9.7 22 347-368 38-59 (266)
184 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0077 2.6E-07 54.8 5.1 22 157-178 24-45 (235)
185 1odf_A YGR205W, hypothetical 3 95.9 0.046 1.6E-06 51.9 10.6 27 342-368 27-53 (290)
186 1cr0_A DNA primase/helicase; R 95.8 0.013 4.5E-07 55.8 6.8 23 346-368 35-57 (296)
187 2pjz_A Hypothetical protein ST 95.8 0.04 1.4E-06 51.5 9.9 121 347-475 31-192 (263)
188 2eyu_A Twitching motility prot 95.8 0.0027 9.4E-08 59.5 1.9 112 346-472 25-137 (261)
189 2pze_A Cystic fibrosis transme 95.8 0.069 2.4E-06 48.7 11.3 22 157-178 35-56 (229)
190 1qhx_A CPT, protein (chloramph 95.8 0.0048 1.7E-07 53.8 3.3 22 347-368 4-25 (178)
191 3tui_C Methionine import ATP-b 95.8 0.042 1.4E-06 53.8 10.2 63 413-475 166-231 (366)
192 1jr3_D DNA polymerase III, del 95.8 0.074 2.5E-06 51.7 12.1 128 344-499 16-155 (343)
193 2pze_A Cystic fibrosis transme 95.8 0.096 3.3E-06 47.8 12.1 56 417-474 137-196 (229)
194 2cbz_A Multidrug resistance-as 95.8 0.064 2.2E-06 49.2 10.9 55 417-473 134-194 (237)
195 2i1q_A DNA repair and recombin 95.8 0.022 7.6E-07 55.0 8.1 88 155-243 97-214 (322)
196 1n0w_A DNA repair protein RAD5 95.7 0.019 6.6E-07 52.6 7.3 88 156-244 24-130 (243)
197 3c8u_A Fructokinase; YP_612366 95.7 0.0059 2E-07 55.0 3.7 37 142-178 8-44 (208)
198 3m6a_A ATP-dependent protease 95.7 0.032 1.1E-06 58.1 9.6 46 133-178 81-130 (543)
199 1rz3_A Hypothetical protein rb 95.7 0.0089 3E-07 53.5 4.7 41 138-178 3-44 (201)
200 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.007 2.4E-07 62.1 4.3 42 323-368 22-63 (500)
201 3sr0_A Adenylate kinase; phosp 95.7 0.031 1E-06 50.2 8.1 107 348-472 2-119 (206)
202 3cmu_A Protein RECA, recombina 95.6 0.016 5.4E-07 68.3 7.6 96 334-438 1414-1515(2050)
203 1v5w_A DMC1, meiotic recombina 95.6 0.053 1.8E-06 52.8 10.4 88 155-243 121-229 (343)
204 4b4t_L 26S protease subunit RP 95.6 0.038 1.3E-06 55.5 9.1 47 133-179 181-238 (437)
205 1in4_A RUVB, holliday junction 95.6 0.0076 2.6E-07 58.7 3.9 48 132-179 24-74 (334)
206 3bh0_A DNAB-like replicative h 95.5 0.053 1.8E-06 52.2 9.8 49 333-386 56-104 (315)
207 4b4t_J 26S protease regulatory 95.5 0.014 4.9E-07 57.7 5.7 47 133-179 148-205 (405)
208 1ny5_A Transcriptional regulat 95.5 0.074 2.5E-06 52.8 11.0 45 324-368 138-182 (387)
209 1ex7_A Guanylate kinase; subst 95.5 0.0058 2E-07 54.0 2.6 22 347-368 2-23 (186)
210 1lv7_A FTSH; alpha/beta domain 95.5 0.0089 3.1E-07 55.6 4.1 48 132-179 11-68 (257)
211 3d31_A Sulfate/molybdate ABC t 95.5 0.072 2.5E-06 51.8 10.6 59 414-475 131-195 (348)
212 3kl4_A SRP54, signal recogniti 95.5 0.036 1.2E-06 55.6 8.5 24 345-368 96-119 (433)
213 3hr8_A Protein RECA; alpha and 95.5 0.077 2.6E-06 51.8 10.7 82 155-243 60-149 (356)
214 2z43_A DNA repair and recombin 95.5 0.025 8.6E-07 54.7 7.2 88 156-244 107-214 (324)
215 3kb2_A SPBC2 prophage-derived 95.4 0.0071 2.4E-07 52.3 3.0 22 347-368 2-23 (173)
216 1ly1_A Polynucleotide kinase; 95.4 0.0084 2.9E-07 52.2 3.5 22 347-368 3-24 (181)
217 3bos_A Putative DNA replicatio 95.4 0.012 4.1E-07 53.8 4.6 58 133-194 28-88 (242)
218 1zp6_A Hypothetical protein AT 95.4 0.011 3.6E-07 52.2 3.9 23 346-368 9-31 (191)
219 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.049 1.7E-06 52.7 8.9 108 157-275 172-279 (330)
220 2zr9_A Protein RECA, recombina 95.4 0.07 2.4E-06 52.1 10.1 82 155-243 60-149 (349)
221 3lw7_A Adenylate kinase relate 95.3 0.0085 2.9E-07 51.8 3.1 20 347-366 2-21 (179)
222 1ofh_A ATP-dependent HSL prote 95.3 0.0068 2.3E-07 57.9 2.7 47 133-179 15-73 (310)
223 1xp8_A RECA protein, recombina 95.3 0.03 1E-06 55.0 7.4 81 156-243 74-162 (366)
224 3e70_C DPA, signal recognition 95.3 0.19 6.3E-06 48.5 12.8 25 344-368 127-151 (328)
225 3jvv_A Twitching mobility prot 95.3 0.0036 1.2E-07 61.4 0.6 111 156-275 123-235 (356)
226 3tlx_A Adenylate kinase 2; str 95.3 0.013 4.5E-07 54.1 4.4 41 328-368 11-51 (243)
227 1vma_A Cell division protein F 95.3 0.028 9.6E-07 53.8 6.7 24 345-368 103-126 (306)
228 1tue_A Replication protein E1; 95.3 0.014 4.8E-07 52.0 4.2 38 330-368 43-80 (212)
229 3trf_A Shikimate kinase, SK; a 95.2 0.0094 3.2E-07 52.3 3.1 23 346-368 5-27 (185)
230 3fvq_A Fe(3+) IONS import ATP- 95.2 0.09 3.1E-06 51.3 10.3 59 413-475 141-206 (359)
231 1z47_A CYSA, putative ABC-tran 95.2 0.066 2.2E-06 52.2 9.3 62 414-475 149-213 (355)
232 1odf_A YGR205W, hypothetical 3 95.2 0.015 5.2E-07 55.3 4.6 26 153-178 28-53 (290)
233 3vaa_A Shikimate kinase, SK; s 95.2 0.01 3.5E-07 52.9 3.2 23 346-368 25-47 (199)
234 1kgd_A CASK, peripheral plasma 95.2 0.011 3.6E-07 51.9 3.2 22 347-368 6-27 (180)
235 1j8m_F SRP54, signal recogniti 95.2 0.077 2.6E-06 50.5 9.5 23 346-368 98-120 (297)
236 4b4t_H 26S protease regulatory 95.1 0.023 7.7E-07 57.2 5.8 47 133-179 209-266 (467)
237 2rhm_A Putative kinase; P-loop 95.1 0.014 4.7E-07 51.5 3.8 24 345-368 4-27 (193)
238 3uie_A Adenylyl-sulfate kinase 95.1 0.013 4.5E-07 52.2 3.7 25 344-368 23-47 (200)
239 3dzd_A Transcriptional regulat 95.1 0.044 1.5E-06 54.0 7.8 46 323-368 129-174 (368)
240 1knq_A Gluconate kinase; ALFA/ 95.1 0.016 5.4E-07 50.4 4.1 24 345-368 7-30 (175)
241 2r62_A Cell division protease 95.1 0.0084 2.9E-07 56.1 2.4 48 132-179 10-67 (268)
242 1kag_A SKI, shikimate kinase I 95.1 0.0098 3.3E-07 51.5 2.6 22 347-368 5-26 (173)
243 3kb2_A SPBC2 prophage-derived 95.1 0.0085 2.9E-07 51.8 2.2 22 157-178 2-23 (173)
244 2px0_A Flagellar biosynthesis 95.0 0.062 2.1E-06 51.1 8.4 24 345-368 104-127 (296)
245 2ewv_A Twitching motility prot 95.0 0.032 1.1E-06 55.0 6.6 111 346-471 136-247 (372)
246 1zp6_A Hypothetical protein AT 95.0 0.01 3.5E-07 52.3 2.7 23 156-178 9-31 (191)
247 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.045 1.5E-06 56.1 7.7 43 133-179 22-64 (500)
248 2orw_A Thymidine kinase; TMTK, 95.0 0.0018 6.2E-08 57.3 -2.4 21 157-177 4-24 (184)
249 3dm5_A SRP54, signal recogniti 95.0 0.064 2.2E-06 53.8 8.7 24 345-368 99-122 (443)
250 3tau_A Guanylate kinase, GMP k 95.0 0.015 5E-07 52.3 3.6 24 345-368 7-30 (208)
251 3io5_A Recombination and repai 94.9 0.12 3.9E-06 49.4 9.7 81 157-244 29-122 (333)
252 3hws_A ATP-dependent CLP prote 94.9 0.015 5.1E-07 57.2 3.9 46 134-179 16-74 (363)
253 2bbs_A Cystic fibrosis transme 94.9 0.19 6.5E-06 47.6 11.4 55 418-474 167-225 (290)
254 1nks_A Adenylate kinase; therm 94.9 0.015 5E-07 51.2 3.5 22 347-368 2-23 (194)
255 2c9o_A RUVB-like 1; hexameric 94.9 0.034 1.2E-06 56.5 6.6 48 132-179 36-86 (456)
256 2yyz_A Sugar ABC transporter, 94.9 0.085 2.9E-06 51.6 9.1 62 414-475 137-201 (359)
257 1v43_A Sugar-binding transport 94.9 0.097 3.3E-06 51.4 9.4 63 413-475 144-209 (372)
258 3t61_A Gluconokinase; PSI-biol 94.8 0.014 4.8E-07 52.1 3.1 23 346-368 18-40 (202)
259 3lda_A DNA repair protein RAD5 94.8 0.047 1.6E-06 54.3 7.2 57 156-213 178-238 (400)
260 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.077 2.6E-06 51.3 8.5 109 347-473 172-280 (330)
261 1kht_A Adenylate kinase; phosp 94.8 0.015 5.3E-07 51.0 3.3 22 347-368 4-25 (192)
262 1ixz_A ATP-dependent metallopr 94.8 0.018 6.3E-07 53.4 3.9 47 132-179 15-72 (254)
263 3rlf_A Maltose/maltodextrin im 94.8 0.063 2.1E-06 52.8 7.9 22 347-368 30-51 (381)
264 2eyu_A Twitching motility prot 94.8 0.045 1.5E-06 51.1 6.6 111 155-275 24-137 (261)
265 1g41_A Heat shock protein HSLU 94.8 0.017 5.8E-07 58.1 3.9 46 323-368 15-72 (444)
266 2xxa_A Signal recognition part 94.8 0.13 4.6E-06 51.6 10.5 24 345-368 99-122 (433)
267 1u94_A RECA protein, recombina 94.8 0.033 1.1E-06 54.5 5.9 82 155-243 62-151 (356)
268 4eun_A Thermoresistant glucoki 94.8 0.017 5.7E-07 51.6 3.4 24 345-368 28-51 (200)
269 3tqc_A Pantothenate kinase; bi 94.8 0.023 7.9E-07 54.7 4.6 43 326-368 70-114 (321)
270 3vaa_A Shikimate kinase, SK; s 94.8 0.011 3.9E-07 52.6 2.3 23 156-178 25-47 (199)
271 3iij_A Coilin-interacting nucl 94.8 0.014 4.9E-07 50.9 2.9 23 346-368 11-33 (180)
272 2c95_A Adenylate kinase 1; tra 94.8 0.018 6.3E-07 50.8 3.7 23 346-368 9-31 (196)
273 3a00_A Guanylate kinase, GMP k 94.7 0.014 4.6E-07 51.5 2.7 22 347-368 2-23 (186)
274 3tr0_A Guanylate kinase, GMP k 94.7 0.019 6.5E-07 51.2 3.7 22 347-368 8-29 (205)
275 1ukz_A Uridylate kinase; trans 94.7 0.021 7.3E-07 50.8 4.0 25 344-368 13-37 (203)
276 1kgd_A CASK, peripheral plasma 94.7 0.012 4.1E-07 51.6 2.2 22 157-178 6-27 (180)
277 1uj2_A Uridine-cytidine kinase 94.7 0.019 6.3E-07 53.4 3.6 25 344-368 20-44 (252)
278 1tev_A UMP-CMP kinase; ploop, 94.7 0.019 6.3E-07 50.6 3.5 23 346-368 3-25 (196)
279 1qhx_A CPT, protein (chloramph 94.7 0.012 4.2E-07 51.2 2.2 22 157-178 4-25 (178)
280 2qor_A Guanylate kinase; phosp 94.7 0.015 5.1E-07 52.0 2.9 23 346-368 12-34 (204)
281 2x8a_A Nuclear valosin-contain 94.7 0.021 7E-07 53.9 3.9 47 132-179 9-67 (274)
282 2it1_A 362AA long hypothetical 94.7 0.11 3.6E-06 50.9 9.1 22 347-368 30-51 (362)
283 3asz_A Uridine kinase; cytidin 94.7 0.02 7E-07 51.3 3.7 24 345-368 5-28 (211)
284 1y63_A LMAJ004144AAA protein; 94.6 0.02 6.9E-07 50.3 3.6 24 345-368 9-32 (184)
285 4gp7_A Metallophosphoesterase; 94.6 0.015 5.1E-07 50.5 2.7 23 156-178 9-31 (171)
286 1uf9_A TT1252 protein; P-loop, 94.6 0.022 7.5E-07 50.6 3.9 25 344-368 6-30 (203)
287 2ga8_A Hypothetical 39.9 kDa p 94.6 0.025 8.5E-07 54.9 4.4 43 136-178 2-46 (359)
288 2j41_A Guanylate kinase; GMP, 94.6 0.02 6.9E-07 51.0 3.6 22 347-368 7-28 (207)
289 2qt1_A Nicotinamide riboside k 94.6 0.024 8.2E-07 50.7 4.1 25 344-368 19-43 (207)
290 2q6t_A DNAB replication FORK h 94.6 0.091 3.1E-06 53.1 8.8 47 335-386 190-237 (444)
291 2r44_A Uncharacterized protein 94.6 0.039 1.3E-06 53.3 5.9 42 133-178 27-68 (331)
292 1knq_A Gluconate kinase; ALFA/ 94.6 0.017 5.9E-07 50.1 2.9 24 155-178 7-30 (175)
293 2ze6_A Isopentenyl transferase 94.6 0.019 6.6E-07 53.4 3.4 22 347-368 2-23 (253)
294 1kag_A SKI, shikimate kinase I 94.5 0.011 3.8E-07 51.2 1.6 22 157-178 5-26 (173)
295 1ly1_A Polynucleotide kinase; 94.5 0.015 5.1E-07 50.6 2.5 22 157-178 3-24 (181)
296 4a1f_A DNAB helicase, replicat 94.5 0.11 3.6E-06 50.4 8.6 101 331-439 32-167 (338)
297 3b5x_A Lipid A export ATP-bind 94.5 0.08 2.7E-06 55.6 8.4 22 347-368 370-391 (582)
298 2bdt_A BH3686; alpha-beta prot 94.5 0.022 7.5E-07 50.1 3.5 22 347-368 3-24 (189)
299 3ney_A 55 kDa erythrocyte memb 94.5 0.022 7.5E-07 50.7 3.4 24 345-368 18-41 (197)
300 3cmu_A Protein RECA, recombina 94.5 0.064 2.2E-06 63.3 8.1 100 331-439 367-472 (2050)
301 1nks_A Adenylate kinase; therm 94.5 0.017 5.7E-07 50.8 2.6 22 157-178 2-23 (194)
302 1qf9_A UMP/CMP kinase, protein 94.5 0.028 9.7E-07 49.3 4.2 23 346-368 6-28 (194)
303 1g5t_A COB(I)alamin adenosyltr 94.5 0.014 4.9E-07 51.6 2.1 115 156-272 28-164 (196)
304 2vli_A Antibiotic resistance p 94.5 0.015 5.1E-07 50.8 2.3 23 346-368 5-27 (183)
305 1via_A Shikimate kinase; struc 94.4 0.017 6E-07 50.1 2.6 21 348-368 6-26 (175)
306 2bwj_A Adenylate kinase 5; pho 94.4 0.023 7.7E-07 50.3 3.4 22 347-368 13-34 (199)
307 2plr_A DTMP kinase, probable t 94.4 0.024 8.3E-07 50.7 3.6 22 347-368 5-26 (213)
308 1pzn_A RAD51, DNA repair and r 94.4 0.091 3.1E-06 51.3 8.0 89 155-244 130-242 (349)
309 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.024 8E-07 53.0 3.6 23 346-368 4-26 (260)
310 4b4t_I 26S protease regulatory 94.4 0.06 2E-06 53.6 6.6 47 133-179 182-239 (437)
311 3cmw_A Protein RECA, recombina 94.4 0.064 2.2E-06 62.5 7.8 98 333-439 369-472 (1706)
312 2iyv_A Shikimate kinase, SK; t 94.4 0.016 5.6E-07 50.7 2.4 22 347-368 3-24 (184)
313 2cdn_A Adenylate kinase; phosp 94.4 0.026 9E-07 50.2 3.8 23 346-368 20-42 (201)
314 1gvn_B Zeta; postsegregational 94.4 0.025 8.5E-07 53.7 3.8 25 344-368 31-55 (287)
315 3uie_A Adenylyl-sulfate kinase 94.4 0.017 5.8E-07 51.5 2.4 24 155-178 24-47 (200)
316 3cm0_A Adenylate kinase; ATP-b 94.4 0.024 8.3E-07 49.6 3.4 22 347-368 5-26 (186)
317 3k1j_A LON protease, ATP-depen 94.4 0.023 7.9E-07 60.0 3.8 44 321-368 39-82 (604)
318 1zuh_A Shikimate kinase; alpha 94.4 0.021 7.2E-07 49.2 3.0 24 345-368 6-29 (168)
319 1zuh_A Shikimate kinase; alpha 94.3 0.016 5.4E-07 50.0 2.1 24 155-178 6-29 (168)
320 2jaq_A Deoxyguanosine kinase; 94.3 0.022 7.6E-07 50.6 3.2 21 348-368 2-22 (205)
321 1ye8_A Protein THEP1, hypothet 94.3 0.024 8.1E-07 49.6 3.2 70 425-498 96-175 (178)
322 1iy2_A ATP-dependent metallopr 94.3 0.026 8.9E-07 53.2 3.7 47 132-179 39-96 (278)
323 2wwf_A Thymidilate kinase, put 94.3 0.028 9.7E-07 50.3 3.8 24 345-368 9-32 (212)
324 2yvu_A Probable adenylyl-sulfa 94.3 0.029 9.8E-07 49.3 3.7 24 345-368 12-35 (186)
325 3umf_A Adenylate kinase; rossm 94.3 0.028 9.5E-07 50.9 3.7 25 344-368 27-51 (217)
326 2if2_A Dephospho-COA kinase; a 94.3 0.018 6.1E-07 51.4 2.4 22 157-178 2-23 (204)
327 1cke_A CK, MSSA, protein (cyti 94.3 0.023 8E-07 51.5 3.2 22 347-368 6-27 (227)
328 1lvg_A Guanylate kinase, GMP k 94.3 0.02 6.7E-07 51.1 2.6 22 347-368 5-26 (198)
329 3trf_A Shikimate kinase, SK; a 94.3 0.017 5.7E-07 50.6 2.2 23 156-178 5-27 (185)
330 3bgw_A DNAB-like replicative h 94.2 0.25 8.4E-06 49.9 11.0 26 344-369 195-220 (444)
331 2z0h_A DTMP kinase, thymidylat 94.2 0.049 1.7E-06 48.0 5.2 21 348-368 2-22 (197)
332 2if2_A Dephospho-COA kinase; a 94.2 0.025 8.6E-07 50.4 3.3 22 347-368 2-23 (204)
333 2bdt_A BH3686; alpha-beta prot 94.2 0.019 6.5E-07 50.6 2.4 22 157-178 3-24 (189)
334 1aky_A Adenylate kinase; ATP:A 94.2 0.026 9E-07 51.0 3.5 23 346-368 4-26 (220)
335 1nn5_A Similar to deoxythymidy 94.2 0.029 9.9E-07 50.3 3.7 23 346-368 9-31 (215)
336 1q57_A DNA primase/helicase; d 94.2 0.15 5.2E-06 52.4 9.6 90 344-439 240-365 (503)
337 3zvl_A Bifunctional polynucleo 94.2 0.12 4.3E-06 51.6 8.7 25 344-368 256-280 (416)
338 1ex7_A Guanylate kinase; subst 94.2 0.014 4.8E-07 51.5 1.5 22 157-178 2-23 (186)
339 3bk7_A ABC transporter ATP-bin 94.2 0.26 9E-06 51.7 11.5 127 347-475 383-539 (607)
340 3dm5_A SRP54, signal recogniti 94.2 0.19 6.7E-06 50.3 10.0 24 155-178 99-122 (443)
341 1jjv_A Dephospho-COA kinase; P 94.2 0.027 9.4E-07 50.3 3.5 22 347-368 3-24 (206)
342 3tr0_A Guanylate kinase, GMP k 94.2 0.018 6.1E-07 51.4 2.2 22 157-178 8-29 (205)
343 1e6c_A Shikimate kinase; phosp 94.2 0.021 7.1E-07 49.3 2.6 22 347-368 3-24 (173)
344 1oxx_K GLCV, glucose, ABC tran 94.2 0.084 2.9E-06 51.5 7.1 123 348-475 33-208 (353)
345 3j16_B RLI1P; ribosome recycli 94.2 0.29 9.7E-06 51.4 11.6 22 347-368 104-125 (608)
346 2bbw_A Adenylate kinase 4, AK4 94.2 0.027 9.4E-07 51.9 3.5 23 346-368 27-49 (246)
347 1uf9_A TT1252 protein; P-loop, 94.2 0.024 8.1E-07 50.4 2.9 24 155-178 7-30 (203)
348 4eun_A Thermoresistant glucoki 94.1 0.018 6.3E-07 51.3 2.2 24 155-178 28-51 (200)
349 3tlx_A Adenylate kinase 2; str 94.1 0.031 1.1E-06 51.6 3.8 40 139-178 12-51 (243)
350 3p32_A Probable GTPase RV1496/ 94.1 0.05 1.7E-06 53.3 5.5 37 332-368 65-101 (355)
351 3upu_A ATP-dependent DNA helic 94.1 0.1 3.5E-06 53.0 7.9 23 347-369 46-68 (459)
352 3fwy_A Light-independent proto 94.1 0.052 1.8E-06 52.1 5.4 25 344-368 46-70 (314)
353 2rhm_A Putative kinase; P-loop 94.1 0.024 8.4E-07 49.8 2.9 23 156-178 5-27 (193)
354 2pt5_A Shikimate kinase, SK; a 94.1 0.028 9.5E-07 48.3 3.2 21 348-368 2-22 (168)
355 2pez_A Bifunctional 3'-phospho 94.1 0.033 1.1E-06 48.5 3.6 23 346-368 5-27 (179)
356 1zd8_A GTP:AMP phosphotransfer 94.0 0.03 1E-06 51.0 3.4 23 346-368 7-29 (227)
357 4b4t_K 26S protease regulatory 94.0 0.042 1.4E-06 55.0 4.7 47 133-179 172-229 (428)
358 1ye8_A Protein THEP1, hypothet 94.0 0.021 7.2E-07 50.0 2.2 22 158-179 2-23 (178)
359 3asz_A Uridine kinase; cytidin 94.0 0.025 8.5E-07 50.7 2.8 24 155-178 5-28 (211)
360 2ffh_A Protein (FFH); SRP54, s 94.0 0.085 2.9E-06 52.8 6.9 24 345-368 97-120 (425)
361 1sky_E F1-ATPase, F1-ATP synth 94.0 0.1 3.5E-06 52.6 7.4 89 347-439 152-256 (473)
362 2qt1_A Nicotinamide riboside k 94.0 0.024 8.3E-07 50.7 2.7 24 155-178 20-43 (207)
363 3ozx_A RNAse L inhibitor; ATP 94.0 0.2 6.7E-06 51.9 9.9 59 415-475 143-204 (538)
364 2pbr_A DTMP kinase, thymidylat 94.0 0.03 1E-06 49.3 3.2 21 348-368 2-22 (195)
365 3a00_A Guanylate kinase, GMP k 94.0 0.017 5.8E-07 50.9 1.5 22 157-178 2-23 (186)
366 2hf9_A Probable hydrogenase ni 94.0 0.041 1.4E-06 49.7 4.2 25 155-179 37-61 (226)
367 2dr3_A UPF0273 protein PH0284; 93.9 0.045 1.6E-06 50.1 4.6 38 345-386 22-59 (247)
368 3fwy_A Light-independent proto 93.9 0.023 8E-07 54.6 2.6 23 155-177 47-69 (314)
369 1yqt_A RNAse L inhibitor; ATP- 93.9 0.16 5.5E-06 52.6 9.1 127 347-475 313-469 (538)
370 3t61_A Gluconokinase; PSI-biol 93.9 0.017 5.7E-07 51.6 1.4 23 156-178 18-40 (202)
371 2p5t_B PEZT; postsegregational 93.9 0.044 1.5E-06 50.8 4.4 25 344-368 30-54 (253)
372 2r6a_A DNAB helicase, replicat 93.9 0.21 7.2E-06 50.6 9.8 26 344-369 201-226 (454)
373 2v54_A DTMP kinase, thymidylat 93.9 0.036 1.2E-06 49.3 3.6 23 346-368 4-26 (204)
374 2jaq_A Deoxyguanosine kinase; 93.9 0.022 7.6E-07 50.6 2.2 21 158-178 2-22 (205)
375 2xxa_A Signal recognition part 93.9 0.18 6.2E-06 50.6 9.0 38 141-178 78-122 (433)
376 2hf9_A Probable hydrogenase ni 93.9 0.057 1.9E-06 48.8 5.0 38 330-369 24-61 (226)
377 1kht_A Adenylate kinase; phosp 93.8 0.023 7.9E-07 49.9 2.2 22 157-178 4-25 (192)
378 2j41_A Guanylate kinase; GMP, 93.8 0.022 7.7E-07 50.7 2.1 23 156-178 6-28 (207)
379 3p32_A Probable GTPase RV1496/ 93.8 0.047 1.6E-06 53.5 4.6 37 142-178 65-101 (355)
380 3fb4_A Adenylate kinase; psych 93.8 0.033 1.1E-06 50.1 3.2 21 348-368 2-22 (216)
381 1zak_A Adenylate kinase; ATP:A 93.8 0.032 1.1E-06 50.6 3.1 23 346-368 5-27 (222)
382 1cke_A CK, MSSA, protein (cyti 93.8 0.024 8E-07 51.5 2.3 22 157-178 6-27 (227)
383 1g8p_A Magnesium-chelatase 38 93.8 0.034 1.2E-06 54.1 3.6 46 132-179 23-68 (350)
384 3ice_A Transcription terminati 93.8 0.027 9.1E-07 55.2 2.7 103 144-253 163-282 (422)
385 1xjc_A MOBB protein homolog; s 93.8 0.037 1.3E-06 47.9 3.3 24 345-368 3-26 (169)
386 1znw_A Guanylate kinase, GMP k 93.8 0.038 1.3E-06 49.5 3.5 22 347-368 21-42 (207)
387 1jjv_A Dephospho-COA kinase; P 93.8 0.026 8.8E-07 50.5 2.4 22 157-178 3-24 (206)
388 2ck3_D ATP synthase subunit be 93.7 0.14 4.9E-06 51.5 7.9 99 144-244 142-264 (482)
389 1uj2_A Uridine-cytidine kinase 93.7 0.027 9.2E-07 52.3 2.6 24 155-178 21-44 (252)
390 1s96_A Guanylate kinase, GMP k 93.7 0.038 1.3E-06 50.1 3.5 23 346-368 16-38 (219)
391 2jeo_A Uridine-cytidine kinase 93.7 0.042 1.4E-06 50.7 3.9 24 345-368 24-47 (245)
392 2b8t_A Thymidine kinase; deoxy 93.7 0.031 1E-06 50.8 2.8 109 156-272 12-127 (223)
393 1lvg_A Guanylate kinase, GMP k 93.7 0.02 6.9E-07 51.0 1.6 22 157-178 5-26 (198)
394 2grj_A Dephospho-COA kinase; T 93.7 0.041 1.4E-06 48.7 3.6 25 344-368 10-34 (192)
395 2wsm_A Hydrogenase expression/ 93.7 0.043 1.5E-06 49.4 3.9 39 139-179 15-53 (221)
396 3tau_A Guanylate kinase, GMP k 93.7 0.024 8.4E-07 50.9 2.2 23 156-178 8-30 (208)
397 3dl0_A Adenylate kinase; phosp 93.7 0.035 1.2E-06 50.0 3.2 21 348-368 2-22 (216)
398 1via_A Shikimate kinase; struc 93.7 0.021 7E-07 49.6 1.6 22 157-178 5-26 (175)
399 2qor_A Guanylate kinase; phosp 93.7 0.02 7E-07 51.2 1.6 23 156-178 12-34 (204)
400 3e70_C DPA, signal recognition 93.7 0.041 1.4E-06 53.2 3.8 24 155-178 128-151 (328)
401 1y63_A LMAJ004144AAA protein; 93.7 0.028 9.5E-07 49.4 2.4 24 155-178 9-32 (184)
402 1ukz_A Uridylate kinase; trans 93.7 0.031 1.1E-06 49.7 2.8 24 155-178 14-37 (203)
403 3j16_B RLI1P; ribosome recycli 93.7 0.33 1.1E-05 51.0 10.9 127 347-475 379-535 (608)
404 1z6g_A Guanylate kinase; struc 93.7 0.032 1.1E-06 50.5 2.9 22 347-368 24-45 (218)
405 3aez_A Pantothenate kinase; tr 93.6 0.042 1.4E-06 52.7 3.8 25 344-368 88-112 (312)
406 1um8_A ATP-dependent CLP prote 93.6 0.043 1.5E-06 54.1 4.0 46 133-178 21-94 (376)
407 2ze6_A Isopentenyl transferase 93.6 0.028 9.6E-07 52.2 2.5 22 157-178 2-23 (253)
408 3iij_A Coilin-interacting nucl 93.6 0.021 7.3E-07 49.8 1.6 23 156-178 11-33 (180)
409 2f1r_A Molybdopterin-guanine d 93.6 0.025 8.6E-07 49.1 2.0 23 156-178 2-24 (171)
410 1fx0_B ATP synthase beta chain 93.6 0.14 4.8E-06 51.8 7.7 99 144-244 154-277 (498)
411 2f6r_A COA synthase, bifunctio 93.6 0.047 1.6E-06 51.6 4.0 24 345-368 74-97 (281)
412 2grj_A Dephospho-COA kinase; T 93.6 0.034 1.2E-06 49.3 2.9 25 154-178 10-34 (192)
413 1gvn_B Zeta; postsegregational 93.6 0.055 1.9E-06 51.3 4.5 24 155-178 32-55 (287)
414 4b4t_M 26S protease regulatory 93.6 0.047 1.6E-06 54.7 4.1 47 133-179 181-238 (434)
415 3be4_A Adenylate kinase; malar 93.6 0.035 1.2E-06 50.1 3.0 22 347-368 6-27 (217)
416 1sky_E F1-ATPase, F1-ATP synth 93.5 0.12 4.2E-06 52.0 7.1 98 145-244 141-256 (473)
417 3tqc_A Pantothenate kinase; bi 93.5 0.05 1.7E-06 52.3 4.1 24 154-177 90-113 (321)
418 2c95_A Adenylate kinase 1; tra 93.5 0.031 1.1E-06 49.3 2.5 23 156-178 9-31 (196)
419 4e22_A Cytidylate kinase; P-lo 93.5 0.044 1.5E-06 50.8 3.6 23 346-368 27-49 (252)
420 3hjn_A DTMP kinase, thymidylat 93.5 0.082 2.8E-06 47.0 5.2 49 348-400 2-50 (197)
421 2p5t_B PEZT; postsegregational 93.5 0.05 1.7E-06 50.4 4.0 24 155-178 31-54 (253)
422 1znw_A Guanylate kinase, GMP k 93.5 0.028 9.6E-07 50.4 2.2 23 156-178 20-42 (207)
423 1ls1_A Signal recognition part 93.5 0.11 3.7E-06 49.4 6.4 23 346-368 98-120 (295)
424 1vht_A Dephospho-COA kinase; s 93.5 0.049 1.7E-06 49.1 3.8 23 346-368 4-26 (218)
425 3qf4_A ABC transporter, ATP-bi 93.4 0.11 3.8E-06 54.5 6.9 22 347-368 370-391 (587)
426 2ga8_A Hypothetical 39.9 kDa p 93.4 0.053 1.8E-06 52.6 4.1 39 330-368 6-46 (359)
427 1m7g_A Adenylylsulfate kinase; 93.4 0.049 1.7E-06 48.9 3.7 23 346-368 25-47 (211)
428 2px0_A Flagellar biosynthesis 93.4 0.18 6.1E-06 47.9 7.8 24 155-178 104-127 (296)
429 1xjc_A MOBB protein homolog; s 93.4 0.032 1.1E-06 48.3 2.2 24 155-178 3-26 (169)
430 1tev_A UMP-CMP kinase; ploop, 93.4 0.033 1.1E-06 49.0 2.5 23 156-178 3-25 (196)
431 1gtv_A TMK, thymidylate kinase 93.4 0.024 8.4E-07 50.8 1.6 21 158-178 2-22 (214)
432 1rj9_A FTSY, signal recognitio 93.4 0.055 1.9E-06 51.7 4.1 24 345-368 101-124 (304)
433 2ewv_A Twitching motility prot 93.4 0.056 1.9E-06 53.3 4.3 111 155-275 135-248 (372)
434 3cm0_A Adenylate kinase; ATP-b 93.4 0.034 1.2E-06 48.7 2.5 22 157-178 5-26 (186)
435 2bbw_A Adenylate kinase 4, AK4 93.4 0.031 1.1E-06 51.6 2.3 22 156-177 27-48 (246)
436 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.035 1.2E-06 51.8 2.6 23 156-178 4-26 (260)
437 2yvu_A Probable adenylyl-sulfa 93.3 0.036 1.2E-06 48.6 2.5 24 155-178 12-35 (186)
438 3ozx_A RNAse L inhibitor; ATP 93.3 0.22 7.7E-06 51.5 8.9 61 415-475 390-453 (538)
439 1htw_A HI0065; nucleotide-bind 93.3 0.057 1.9E-06 46.2 3.7 23 346-368 33-55 (158)
440 2bwj_A Adenylate kinase 5; pho 93.3 0.034 1.2E-06 49.1 2.4 23 156-178 12-34 (199)
441 2iyv_A Shikimate kinase, SK; t 93.3 0.024 8.2E-07 49.6 1.3 22 157-178 3-24 (184)
442 3kl4_A SRP54, signal recogniti 93.3 0.17 5.8E-06 50.7 7.7 24 155-178 96-119 (433)
443 2vli_A Antibiotic resistance p 93.3 0.027 9.3E-07 49.1 1.7 23 156-178 5-27 (183)
444 2j37_W Signal recognition part 93.3 0.37 1.3E-05 49.2 10.3 24 345-368 100-123 (504)
445 2wsm_A Hydrogenase expression/ 93.3 0.064 2.2E-06 48.3 4.2 39 329-369 15-53 (221)
446 3cmw_A Protein RECA, recombina 93.3 0.11 3.8E-06 60.5 7.1 86 345-439 1430-1520(1706)
447 3aez_A Pantothenate kinase; tr 93.3 0.038 1.3E-06 53.1 2.8 24 155-178 89-112 (312)
448 1a7j_A Phosphoribulokinase; tr 93.3 0.029 9.9E-07 53.3 1.9 24 345-368 4-27 (290)
449 1qf9_A UMP/CMP kinase, protein 93.2 0.039 1.3E-06 48.4 2.7 23 156-178 6-28 (194)
450 1zu4_A FTSY; GTPase, signal re 93.2 0.1 3.5E-06 50.2 5.8 24 345-368 104-127 (320)
451 2ehv_A Hypothetical protein PH 93.2 0.046 1.6E-06 50.2 3.3 23 346-368 30-52 (251)
452 1sq5_A Pantothenate kinase; P- 93.2 0.096 3.3E-06 50.1 5.6 25 344-368 78-102 (308)
453 1svm_A Large T antigen; AAA+ f 93.2 0.076 2.6E-06 52.3 4.9 26 343-368 166-191 (377)
454 1gtv_A TMK, thymidylate kinase 93.2 0.026 9E-07 50.6 1.4 21 348-368 2-22 (214)
455 2plr_A DTMP kinase, probable t 93.2 0.038 1.3E-06 49.4 2.5 23 157-179 5-27 (213)
456 1e6c_A Shikimate kinase; phosp 93.1 0.029 9.8E-07 48.4 1.5 22 157-178 3-24 (173)
457 3b9q_A Chloroplast SRP recepto 93.1 0.062 2.1E-06 51.3 4.0 36 142-177 77-121 (302)
458 3a8t_A Adenylate isopentenyltr 93.1 0.053 1.8E-06 52.3 3.5 25 345-369 39-63 (339)
459 1z6g_A Guanylate kinase; struc 93.1 0.029 9.8E-07 50.8 1.6 23 156-178 23-45 (218)
460 3llm_A ATP-dependent RNA helic 93.1 0.6 2.1E-05 42.4 10.6 21 347-367 77-97 (235)
461 3ney_A 55 kDa erythrocyte memb 93.1 0.037 1.3E-06 49.2 2.2 24 155-178 18-41 (197)
462 4e22_A Cytidylate kinase; P-lo 93.1 0.036 1.2E-06 51.4 2.3 22 156-177 27-48 (252)
463 2j9r_A Thymidine kinase; TK1, 93.0 0.17 5.8E-06 45.3 6.5 107 346-467 28-137 (214)
464 1htw_A HI0065; nucleotide-bind 93.0 0.043 1.5E-06 46.9 2.5 24 155-178 32-55 (158)
465 2f6r_A COA synthase, bifunctio 93.0 0.048 1.6E-06 51.5 3.1 23 155-177 74-96 (281)
466 1e4v_A Adenylate kinase; trans 93.0 0.054 1.9E-06 48.7 3.3 21 348-368 2-22 (214)
467 3r20_A Cytidylate kinase; stru 93.0 0.055 1.9E-06 49.4 3.3 23 346-368 9-31 (233)
468 3lnc_A Guanylate kinase, GMP k 93.0 0.035 1.2E-06 50.6 2.0 21 347-367 28-48 (231)
469 3exa_A TRNA delta(2)-isopenten 93.0 0.06 2.1E-06 51.3 3.6 23 346-368 3-25 (322)
470 3ake_A Cytidylate kinase; CMP 93.0 0.054 1.9E-06 48.2 3.2 21 348-368 4-24 (208)
471 3thx_A DNA mismatch repair pro 93.0 0.056 1.9E-06 59.6 3.8 21 156-176 662-682 (934)
472 3e1s_A Exodeoxyribonuclease V, 92.9 0.34 1.2E-05 50.6 9.6 22 347-368 205-226 (574)
473 2qmh_A HPR kinase/phosphorylas 92.9 0.061 2.1E-06 47.6 3.3 22 347-368 35-56 (205)
474 2cdn_A Adenylate kinase; phosp 92.9 0.041 1.4E-06 48.9 2.3 23 156-178 20-42 (201)
475 1zu4_A FTSY; GTPase, signal re 92.9 0.079 2.7E-06 51.0 4.4 24 155-178 104-127 (320)
476 4a82_A Cystic fibrosis transme 92.9 0.084 2.9E-06 55.4 5.0 22 347-368 368-389 (578)
477 1ak2_A Adenylate kinase isoenz 92.9 0.064 2.2E-06 49.0 3.6 23 346-368 16-38 (233)
478 2pt5_A Shikimate kinase, SK; a 92.9 0.041 1.4E-06 47.2 2.2 21 158-178 2-22 (168)
479 1j8m_F SRP54, signal recogniti 92.8 0.3 1E-05 46.3 8.4 23 156-178 98-120 (297)
480 3foz_A TRNA delta(2)-isopenten 92.8 0.073 2.5E-06 50.6 3.9 25 344-368 8-32 (316)
481 2xb4_A Adenylate kinase; ATP-b 92.8 0.059 2E-06 48.9 3.2 21 348-368 2-22 (223)
482 2jeo_A Uridine-cytidine kinase 92.8 0.049 1.7E-06 50.2 2.7 24 155-178 24-47 (245)
483 1ltq_A Polynucleotide kinase; 92.7 0.062 2.1E-06 51.1 3.5 22 347-368 3-24 (301)
484 1vma_A Cell division protein F 92.7 0.075 2.6E-06 50.8 4.0 24 155-178 103-126 (306)
485 2pbr_A DTMP kinase, thymidylat 92.7 0.043 1.5E-06 48.2 2.2 21 158-178 2-22 (195)
486 4eaq_A DTMP kinase, thymidylat 92.7 0.11 3.7E-06 47.4 4.9 24 345-368 25-48 (229)
487 1zd8_A GTP:AMP phosphotransfer 92.7 0.046 1.6E-06 49.7 2.4 23 156-178 7-29 (227)
488 3tif_A Uncharacterized ABC tra 92.7 0.074 2.5E-06 48.7 3.8 32 158-192 33-64 (235)
489 3thx_A DNA mismatch repair pro 92.7 0.37 1.2E-05 53.2 9.8 21 346-366 662-682 (934)
490 2wwf_A Thymidilate kinase, put 92.7 0.047 1.6E-06 48.8 2.4 23 156-178 10-32 (212)
491 4a74_A DNA repair and recombin 92.7 0.052 1.8E-06 49.1 2.7 56 156-212 25-84 (231)
492 3lnc_A Guanylate kinase, GMP k 92.6 0.036 1.2E-06 50.5 1.6 21 157-177 28-48 (231)
493 3nwj_A ATSK2; P loop, shikimat 92.6 0.052 1.8E-06 50.3 2.6 22 347-368 49-70 (250)
494 2pcj_A ABC transporter, lipopr 92.6 0.05 1.7E-06 49.5 2.5 20 158-177 32-51 (224)
495 2og2_A Putative signal recogni 92.6 0.08 2.7E-06 51.7 4.1 36 142-177 134-178 (359)
496 1s96_A Guanylate kinase, GMP k 92.6 0.046 1.6E-06 49.6 2.2 23 156-178 16-38 (219)
497 4akg_A Glutathione S-transfera 92.6 0.43 1.5E-05 58.3 11.1 115 157-275 924-1059(2695)
498 3qfl_A MLA10; coiled-coil, (CC 92.6 0.91 3.1E-05 36.2 9.7 60 23-84 13-82 (115)
499 3d3q_A TRNA delta(2)-isopenten 92.6 0.067 2.3E-06 51.7 3.4 22 347-368 8-29 (340)
500 3qf4_B Uncharacterized ABC tra 92.6 0.061 2.1E-06 56.6 3.4 22 347-368 382-403 (598)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.91 E-value=3.3e-24 Score=226.54 Aligned_cols=149 Identities=10% Similarity=0.084 Sum_probs=121.1
Q ss_pred ccchhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhc--ccccccccceeEEEEcCCCC--CHHHHHHHHHHH
Q 010799 136 LDLNKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYE--CETVKEYFQCRAWVPVPEEL--ERRELVTDILKQ 210 (501)
Q Consensus 136 vg~~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~--~~~v~~~F~~~~wv~vs~~~--~~~~l~~~i~~~ 210 (501)
+||+.++++|.++|... +...++|+|+||||+||||||+.+|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999865 44689999999999999999999998 78999999999999999985 899999999999
Q ss_pred hcCCCC---c------CcchHHHHHHHHccCC-eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhcc---
Q 010799 211 VGGSKV---E------KQLDPQKKLRKLFTEN-RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCR--- 277 (501)
Q Consensus 211 ~~~~~~---~------~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~~--- 277 (501)
++.... . +...+...+++.|++| ||||||||||+.+.+ .+.. .+||+||||||+..||..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 986532 1 1122578999999996 999999999998764 1111 2799999999999998743
Q ss_pred ----cCCCCCCCcccCc
Q 010799 278 ----NMSFFGGESSFKP 290 (501)
Q Consensus 278 ----~~~~l~~~~~~~~ 290 (501)
.+++|+.+++|..
T Consensus 285 ~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDF 301 (549)
T ss_dssp EEEEECCCCCHHHHHHH
T ss_pred CeEEECCCCCHHHHHHH
Confidence 3344554555444
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=7.8e-24 Score=223.73 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=138.2
Q ss_pred eecchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHc--ccccccCCccceeEEEEeCCCC--ChHHHHHHHH
Q 010799 326 VSMENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYE--SSYTKKNFPCRAWANVYVSQDF--DMRSVFADIL 400 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~--~~~~~~~f~~~~w~~v~~~~~~--~~~~~~~~i~ 400 (501)
|||++++++|.++|... ....++|+|+||||+||||||+++|+ +.++..+|++++| ++++..+ ++..++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~w--v~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW--LKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE--EECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEE--EEECCCCCCCHHHHHHHHH
Confidence 49999999999999654 34679999999999999999999997 5688999999999 9998875 7899999999
Q ss_pred HHhccCCC---C---CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 401 RQLTQDEV---D---EESSLDDLESEFTGILYEK-RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 401 ~~l~~~~~---~---~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
.++..... . ...+...+...++++|.++ |+||||||+|+.+++ .+. . .+||+||||||++.++..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~---~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----Q---ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----H---HTTCEEEEEESBGGGGGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----c---cCCCEEEEEcCCHHHHHH
Confidence 99987532 1 1234566789999999996 999999999997765 222 2 268999999999999887
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
++....+|+|++|+.++|++||.++++
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 753346899999999999999999875
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.82 E-value=3.5e-20 Score=200.64 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=127.8
Q ss_pred eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc-ceeEEEEeCCCCChHHHHHHHHHHh
Q 010799 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC-RAWANVYVSQDFDMRSVFADILRQL 403 (501)
Q Consensus 325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~-~~w~~v~~~~~~~~~~~~~~i~~~l 403 (501)
.|||+.++++|.++|... +..++|+|+||||+||||||++++++.+++.+|+. ++| ++++..++...++..++..+
T Consensus 130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~W--VsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEE--EECCCSSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEE--EEeCCCCCHHHHHHHHHHHH
Confidence 499999999999999653 34789999999999999999999987678889986 899 99998888888888777754
Q ss_pred ccCC---CCC-------CCCHHHHHHHHHHhc---CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799 404 TQDE---VDE-------ESSLDDLESEFTGIL---YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV 470 (501)
Q Consensus 404 ~~~~---~~~-------~~~~~~~~~~l~~~l---~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~ 470 (501)
.... ... ..+.+.+...+++++ .++|+||||||+|+.+.|+.+ + +||+||||||++.+
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~-----pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N-----LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H-----SSCCEEEECSCSHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C-----CCeEEEEeccChHH
Confidence 3321 100 012345566777766 679999999999998777764 2 48999999999998
Q ss_pred HhhcCCCCcceeCC------CCChHHHHHHHHHhhc
Q 010799 471 ARSFSPSIFLHQLR------PLNEEESGKLFQRRLK 500 (501)
Q Consensus 471 ~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~ 500 (501)
+..+. ....+.|+ +|+.+||++||.++.+
T Consensus 278 a~~l~-g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 278 TDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHHHH-HHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred HHhcC-CCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 86543 23356666 9999999999998743
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=7e-20 Score=211.86 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=134.9
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc-cccCC-ccceeEEEEeCCCCC--hHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY-TKKNF-PCRAWANVYVSQDFD--MRSVF 396 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~-~~~~f-~~~~w~~v~~~~~~~--~~~~~ 396 (501)
....||||++++++|.++|...++..++|+|+||||+||||||++++++.+ ...+| +.++| ++++...+ ....+
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHW--VSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEE--EECCSCCHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEE--EEECCcCchHHHHHH
Confidence 346799999999999999976667789999999999999999999998543 24556 56779 99877543 44556
Q ss_pred HHHHHHhccCCCC---CCCCHHHHHHHHHHhcCCc--eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799 397 ADILRQLTQDEVD---EESSLDDLESEFTGILYEK--RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA 471 (501)
Q Consensus 397 ~~i~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~--r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~ 471 (501)
..++..+...... ...+.+.+...++.++.++ |+||||||+|+..++.. .++|++||||||++.++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~---------~~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA---------FDNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT---------TCSSCEEEEEESSTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh---------hcCCCEEEEEcCCHHHH
Confidence 6777777654321 2456788999999999887 99999999998765544 35689999999999988
Q ss_pred hhcCCCCcceeCCC-CChHHHHHHHHHhhc
Q 010799 472 RSFSPSIFLHQLRP-LNEEESGKLFQRRLK 500 (501)
Q Consensus 472 ~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~ 500 (501)
..+......+++++ |+.++|++||.+.++
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~ 300 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVN 300 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHT
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhC
Confidence 65433677899996 999999999998764
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.82 E-value=1.3e-20 Score=203.85 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=117.8
Q ss_pred cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799 135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQVGG 213 (501)
Q Consensus 135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~~~~ 213 (501)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|++ ++||++++.++...++..+++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998643 4789999999999999999999998889999987 8999999999998888888875432
Q ss_pred C---CCc----------CcchHHHHHHHHc---cCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc-
Q 010799 214 S---KVE----------KQLDPQKKLRKLF---TENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC- 276 (501)
Q Consensus 214 ~---~~~----------~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~- 276 (501)
. ... ....+...|+..| .+||+||||||||+.+.|+.+. +||+||||||+..++..
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 1 110 0112356677765 7899999999999988887652 69999999999999852
Q ss_pred -----ccCC------CCCCCcccCcc
Q 010799 277 -----RNMS------FFGGESSFKPK 291 (501)
Q Consensus 277 -----~~~~------~l~~~~~~~~~ 291 (501)
+.++ .|+.+++|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF 307 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLL 307 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHH
T ss_pred CCCeEEEecCccccCCcCHHHHHHHH
Confidence 2333 55666666554
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=188.81 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=124.0
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCc-cceeEEEEeCCCCChHHHH---
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFP-CRAWANVYVSQDFDMRSVF--- 396 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~-~~~w~~v~~~~~~~~~~~~--- 396 (501)
...||||+.++++|.++|....+..++|+|+|+||+||||||.+++++..+ ..+|. +++| ++++.. +...++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~w--v~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW--VSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEE--EEEESC-CHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEE--EECCCC-chHHHHHHH
Confidence 356999999999999999765566799999999999999999999985444 77884 7999 888654 233333
Q ss_pred HHHHHHhccCC---CCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799 397 ADILRQLTQDE---VDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA 471 (501)
Q Consensus 397 ~~i~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~ 471 (501)
..++..+.... .....+.+.+...+.+.+.+ +++||||||+|+...+.. .+++++||||||+..++
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~---------l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA---------FDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT---------TCSSCEEEEEESCGGGG
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH---------hcCCCeEEEECCCcHHH
Confidence 33444454211 11345667788888888876 689999999998654432 34589999999999887
Q ss_pred hhcCCCCcceeC---CCCChHHHHHHHHHhhc
Q 010799 472 RSFSPSIFLHQL---RPLNEEESGKLFQRRLK 500 (501)
Q Consensus 472 ~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~ 500 (501)
..+. ...+++ ++|+.+||++||.+.++
T Consensus 271 ~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~ 300 (591)
T 1z6t_A 271 DSVM--GPKYVVPVESSLGKEKGLEILSLFVN 300 (591)
T ss_dssp TTCC--SCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred HhcC--CCceEeecCCCCCHHHHHHHHHHHhC
Confidence 6653 333444 68999999999998765
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.77 E-value=8.8e-19 Score=202.65 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=111.5
Q ss_pred ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccc-cccc-ceeEEEEcCCCCC--HHHHHH
Q 010799 130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETV-KEYF-QCRAWVPVPEELE--RRELVT 205 (501)
Q Consensus 130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v-~~~F-~~~~wv~vs~~~~--~~~l~~ 205 (501)
.....||||++++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+| +..+||++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999876667899999999999999999999987654 5556 6677999998654 344577
Q ss_pred HHHHHhcCCCCc------CcchHHHHHHHHccCC--eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 206 DILKQVGGSKVE------KQLDPQKKLRKLFTEN--RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 206 ~i~~~~~~~~~~------~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
.++..+...... ....+...++..|.++ ||||||||||+...|+.+ .+||+||||||+..|+.
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 777777654321 2234578888888877 999999999998877553 57999999999999984
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=178.60 Aligned_cols=138 Identities=13% Similarity=0.214 Sum_probs=105.3
Q ss_pred cccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccc-cccc-ceeEEEEcCCCCCHHHHHHHH-
Q 010799 131 KKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETV-KEYF-QCRAWVPVPEELERRELVTDI- 207 (501)
Q Consensus 131 ~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v-~~~F-~~~~wv~vs~~~~~~~l~~~i- 207 (501)
....+|||+.++++|.++|.....+.++|+|+||||+||||||+.+|++..+ ..+| +.++|+++++. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3567999999999999999865556899999999999999999999987766 7889 58999999876 444444444
Q ss_pred --HHHhcCCC------CcCcchHHHHHHHHccC--CeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799 208 --LKQVGGSK------VEKQLDPQKKLRKLFTE--NRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC 276 (501)
Q Consensus 208 --~~~~~~~~------~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~ 276 (501)
+..++... ..........++..+.+ +++||||||+|+...+.. + .+||+||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHh
Confidence 34454211 11122356778887866 789999999998765542 3 468999999999998764
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=1.2e-12 Score=132.96 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=117.3
Q ss_pred cceeecchhHHHHHHHh-hc--CC--CCceEEEE--EecCCCChHHHHHHHHcccccccC-----Cc-cceeEEEEeCCC
Q 010799 323 TAVVSMENDILKLAKLT-LN--SS--DKNFLISV--AGAAGSGKTALVKTIYESSYTKKN-----FP-CRAWANVYVSQD 389 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L-~~--~~--~~~~~v~I--~G~gGvGKT~LA~~~~~~~~~~~~-----f~-~~~w~~v~~~~~ 389 (501)
..|+||+++++.|.+++ .. .+ ...+.+.| +|++|+|||+||+.+++ ..... +. ..+| +++...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAY--VNAFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEE--EEGGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEE--EECCCC
Confidence 56999999999999988 42 11 24467778 99999999999999988 33331 22 2466 777677
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh--------hHHHHHHhcCCCC-CC--
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSPG--------AWYDLKRIFSPQA-SP-- 456 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~--------~~~~l~~~l~~~~-~~-- 456 (501)
.+...++..++.++.........+..++...+.+.+. +++++|||||++... .+..+...+.... .+
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 7888999999998876533223455667777777775 679999999998742 2333333332200 12
Q ss_pred CCCEEEEEeCChHHHhh--------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAYVARS--------FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..+|+||+...+... .......+.+++|+.+++.++|..++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 45568888876543211 11112239999999999999997654
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=8.1e-12 Score=125.52 Aligned_cols=173 Identities=15% Similarity=0.128 Sum_probs=119.6
Q ss_pred cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccC------CccceeEEEEeCCCCChHH
Q 010799 323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKN------FPCRAWANVYVSQDFDMRS 394 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------f~~~~w~~v~~~~~~~~~~ 394 (501)
.+|+||+.+++.+..++... ....+.+.|+|++|+|||++|+.+++ ..... -...+| +++....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~--i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIY--VNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEE--EETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEE--EECCcCCCHHH
Confidence 56999999999999988442 34557899999999999999999988 33221 123456 78877788889
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh----hHHHHHHhcCCCC-C--CCCCEEEEEe
Q 010799 395 VFADILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSPG----AWYDLKRIFSPQA-S--PIGSRVILIT 465 (501)
Q Consensus 395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~----~~~~l~~~l~~~~-~--~~~~~iIiTt 465 (501)
++..++.++.........+..+....+.+.+. +++.+|+||+++... ..+.+...+.... . ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999999976544334456677777777774 458899999998743 2334433332200 1 4567788888
Q ss_pred CChHHHh----hcCC--CCcceeCCCCChHHHHHHHHHhh
Q 010799 466 REAYVAR----SFSP--SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 466 R~~~~~~----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...... ...+ ....+.+++++.++..++|..++
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 7652211 1111 12479999999999999998764
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=4.5e-12 Score=127.47 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=119.0
Q ss_pred cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccC--------CccceeEEEEeCCCC-C
Q 010799 323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--------FPCRAWANVYVSQDF-D 391 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--------f~~~~w~~v~~~~~~-~ 391 (501)
.+|+||+++++++..++.. .....+.+.|+|++|+|||+||+.+++ ..... ....+| +++.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~--i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAY--VNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEE--EEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEE--EECccCCCC
Confidence 6699999999999988754 234457999999999999999999988 33221 223456 7776666 7
Q ss_pred hHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhh---HHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 392 MRSVFADILRQLTQDEV-DEESSLDDLESEFTGILYEKRYLVVLDDVHSPGA---WYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~---~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
...++..++..+..... ....+.......+.+.+..++.+|||||++.... .+.+...+.. ...+..+|+||+.
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~--~~~~~~iI~~t~~ 173 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR--SDANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT--SSSCEEEEEECSS
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc--CCcceEEEEEECC
Confidence 88888888888843222 1233456778888888887766999999987432 2330333333 1267888999886
Q ss_pred hHHH----hhc-CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 468 AYVA----RSF-SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 468 ~~~~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.... ... ......+.+++++.++..++|..++
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 5321 111 1112489999999999999999865
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=5.3e-12 Score=126.77 Aligned_cols=172 Identities=24% Similarity=0.270 Sum_probs=117.6
Q ss_pred cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCC---ccceeEEEEeCCCCChHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~~~w~~v~~~~~~~~~~~~~ 397 (501)
.+|+||+++++.|.+++... ....+.+.|+|++|+|||+||+.+++ .....+ ...+| +++....+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~--i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVY--INTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEE--EEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEE--EECCCCCCHHHHHH
Confidence 56999999999999988642 34567899999999999999999988 444332 23456 77766667777888
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAY 469 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~ 469 (501)
.++..+.........+..+....+.+.+.. ++.+||||+++.. ..+..+...+... ...+..+|+||+...
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVK 174 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCC
Confidence 888777554332334456666777766643 4899999999763 3344444444220 123567788887664
Q ss_pred HHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSP------SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+.. ....+.+++++.++..++|.+++
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 3322221 12589999999999999998754
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.29 E-value=1.1e-11 Score=122.72 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=107.8
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC------ChHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF------DMRSV 395 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~------~~~~~ 395 (501)
...|+||+.+++.|.+++..+ +++.|+|++|+|||+|++++++ +. ..+| +++.... +...+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~--~~-----~~~~--~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN--ER-----PGIL--IDCRELYAERGHITREEL 77 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH--HS-----SEEE--EEHHHHHHTTTCBCHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH--Hc-----CcEE--EEeecccccccCCCHHHH
Confidence 467999999999999998642 6999999999999999999988 32 1566 7664322 45556
Q ss_pred HHHHHHHhcc-----------------CCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCChhh--------HHHHHHh
Q 010799 396 FADILRQLTQ-----------------DEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSPGA--------WYDLKRI 449 (501)
Q Consensus 396 ~~~i~~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~~~--------~~~l~~~ 449 (501)
+..+...+.. .......+..++...+.+.... ++++|||||++.... +..++..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666555432 0000123556666777666643 389999999987432 2222332
Q ss_pred cCCCCCCCCCEEEEEeCChHHHhhc-----------CCCCcceeCCCCChHHHHHHHHHh
Q 010799 450 FSPQASPIGSRVILITREAYVARSF-----------SPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 450 l~~~~~~~~~~iIiTtR~~~~~~~~-----------~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.. ..++.++|+|++.......+ +.....+++.+|+.+|+.+++.+.
T Consensus 158 ~~~--~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 158 AYD--SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp HHH--HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred HHH--hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 222 13578899999876532211 102347999999999999998764
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=3.1e-11 Score=121.42 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=121.8
Q ss_pred cceeecchhHHHHHHHhhc----CCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLN----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~ 397 (501)
.+|+||+.+++.+..++.. ..+..+.+.|+|++|+|||+|++.+++ ...... ...+| +++....+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~--i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVY--INGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEE--EETTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEE--EeCccCCCHHHHHH
Confidence 5699999999999998854 222234899999999999999999988 443332 23456 77777778888999
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC--hhhHHHHHHhcCCCCCC----CCCEEEEEeCChH
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHS--PGAWYDLKRIFSPQASP----IGSRVILITREAY 469 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~----~~~~iIiTtR~~~ 469 (501)
.++..+.........+.......+.+.+. +++.+|+||+++. ...+..|...+.. .. .+..+|++|+...
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~--~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE--ADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC--HHHHSSCCEEEEEEESSTH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh--CCCCCcCCEEEEEEECCch
Confidence 99988865433233456667777776664 5688999999986 3445566565543 22 4678888887764
Q ss_pred HHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799 470 VARSFSP------SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+.. ....+.+++++.++..+++...+
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4333221 22379999999999999998765
No 15
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=5.8e-11 Score=117.79 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=104.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC-----CChHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD-----FDMRSVF 396 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~-----~~~~~~~ 396 (501)
...|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++ .... ..+| +++... .+....+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~--~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIY--LDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEE--EEGGGGTTCSCCCHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEE--EEchhhccccCCCHHHHH
Confidence 3669999999999999 743 6999999999999999999988 3332 2467 776532 3344444
Q ss_pred HHHHHHhcc--------------------CCCC--------CCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-----hH
Q 010799 397 ADILRQLTQ--------------------DEVD--------EESSLDDLESEFTGILYEKRYLVVLDDVHSPG-----AW 443 (501)
Q Consensus 397 ~~i~~~l~~--------------------~~~~--------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-----~~ 443 (501)
..+...+.. +... .......+...+.+... ++++|||||++... ++
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 444443311 0000 02345556666655433 48999999997632 23
Q ss_pred HHHHHhcCCCCCCCCCEEEEEeCChHHHhhc-------CC----CCcceeCCCCChHHHHHHHHHhh
Q 010799 444 YDLKRIFSPQASPIGSRVILITREAYVARSF-------SP----SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 444 ~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~-------~~----~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..++..+.. ...+.++|+|++.......+ .+ ....+.+.+|+.+++.+++.+.+
T Consensus 158 ~~~l~~~~~--~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 158 LPALAYAYD--NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHHHHHHH--HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 333333322 23468899999976532211 11 13579999999999999998653
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=4.6e-10 Score=103.19 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=97.7
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+|+|+++.++.+.+++.... .+.+.|+|++|+|||++|+.+++ ..........+..++.........+.. .+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRH-KIK 90 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHH-HHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHH-HHH
Confidence 4679999999999999996542 23499999999999999999987 433222222331133333222222111 111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI 478 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~ 478 (501)
.+..... ....++.+|+|||++.. ..++.+...+.. ...++.+|+||+... +...+.+..
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1111000 11246789999999863 445566666655 456788888887653 111111134
Q ss_pred cceeCCCCChHHHHHHHHHhh
Q 010799 479 FLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 479 ~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+.+++++.++..+++.+.+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEIC 174 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHH
Confidence 489999999999999998765
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=4.2e-10 Score=104.90 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=98.2
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+|+||+..++.|..++..+ ...+.+.|+|++|+|||+||+.+++. ....+....+ .+. ... ....+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~---~~~---~~~-~~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT---PCG---VCD-NCREIEQ 91 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS---CCS---CSH-HHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC---CCc---ccH-HHHHHhc
Confidence 467999999999999998653 23358999999999999999999873 3222211100 000 000 0011110
Q ss_pred HhccCC---CCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-H
Q 010799 402 QLTQDE---VDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-V 470 (501)
Q Consensus 402 ~l~~~~---~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~ 470 (501)
...... .............+.+.+ .+++.+|||||++. ...++.+...+.. ...+..+|+||+... +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS--CCTTEEEEEEESCGGGS
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc--CCCceEEEEEeCChHhC
Confidence 000000 000001111122222222 24578999999976 4566777777766 566788888887643 2
Q ss_pred HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+.+....+.+++++.++..+++.+.+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 22111134689999999999999998765
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=6.3e-10 Score=107.69 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=108.9
Q ss_pred cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccC---Cc--cceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN---FP--CRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~---f~--~~~w~~v~~~~~~~~~~~ 395 (501)
..+.||+++++++...|.. .......+.|+|++|+|||++++.+++....... .. ..+. +++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~--INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH--IDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE--EETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE--EeccccCCHHHH
Confidence 4489999999999988854 2456689999999999999999999984321111 11 2344 777777888999
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHh--cCCceEEEEEcCCCChhhHHHHHHhcCCCC-CCCCCEEEEEeCChH---
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGI--LYEKRYLVVLDDVHSPGAWYDLKRIFSPQA-SPIGSRVILITREAY--- 469 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~-~~~~~~iIiTtR~~~--- 469 (501)
+..|+.++...........+.+...+... -.+++++++||+++.....+.+...+.+.. ......+|.++-...
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999999765322222333333333332 135689999999988544444444432100 111223333333221
Q ss_pred --HHhhcCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799 470 --VARSFSP--SIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 470 --~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
+.....+ ....+.++|++.+|-.+++..++.
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1111111 125799999999999999998763
No 19
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.03 E-value=3.6e-10 Score=114.59 Aligned_cols=143 Identities=18% Similarity=0.083 Sum_probs=93.8
Q ss_pred ccccccchhhHHHHHHHH-hc--CC--CCeeEEEE--EeeCChhhHHHHhhhhcccccc---cccc-eeEEEEcCCCCCH
Q 010799 132 KTGILDLNKEVNKLADFL-IR--SH--SSLFTISV--VDVAGSVMTTDLWKSYECETVK---EYFQ-CRAWVPVPEELER 200 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~~GvGKTtLa~~v~~~~~v~---~~F~-~~~wv~vs~~~~~ 200 (501)
+..++||+.+++.|.++| .. .. .....+.| +|++|+||||||+.+++..... ..|+ ..+|+...+..+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 42 11 13345555 9999999999999999643221 1122 2467777677789
Q ss_pred HHHHHHHHHHhcCCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCCh--------hHHHHHhhcC---CCCC--CCc
Q 010799 201 RELVTDILKQVGGSKVE---KQLDPQKKLRKLFT--ENRYLVVIINARTP--------DIWDILKYLF---PNSS--NGS 262 (501)
Q Consensus 201 ~~l~~~i~~~~~~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~~--------~~~~~l~~~~---~~~~--~gs 262 (501)
..++..++.+++..... ...++...+...+. +++++|||||++.. +.+..+...+ +... ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999764321 12234566666664 78999999999753 3333333222 2112 344
Q ss_pred EEEEEeccccch
Q 010799 263 RVILSFQEADAA 274 (501)
Q Consensus 263 ~iivTtr~~~va 274 (501)
.||+||+..++.
T Consensus 181 ~lI~~~~~~~~~ 192 (412)
T 1w5s_A 181 GFLLVASDVRAL 192 (412)
T ss_dssp EEEEEEEETHHH
T ss_pred EEEEEeccccHH
Confidence 588888866643
No 20
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.02 E-value=1.6e-09 Score=118.51 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=83.6
Q ss_pred cceeecchhHHHHHHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|.+..++.+...+.... .....+.++|++|+|||++|+.+++ .....-...+. ++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~--i~~s~~~~~~~- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIR--IDMSEYMEKHS- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEE--EEGGGGCSSCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEE--Eechhcccccc-
Confidence 458899999988888774321 1123799999999999999999887 33221122233 44432111000
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCC---------CCCCCCEEEEE
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQ---------ASPIGSRVILI 464 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~---------~~~~~~~iIiT 464 (501)
.....+...++. ....+|+||+++. ...++.|+..+... .....+.||+|
T Consensus 566 ----------------~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 ----------------TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ----------------CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ----------------cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000111122221 1234899999976 34445555443320 01235688888
Q ss_pred eCCh-----H----HHhhc-----CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 465 TREA-----Y----VARSF-----SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 465 tR~~-----~----~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
|... . +...+ .....++.+++|+.++-.+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8621 0 11111 1123589999999999888877654
No 21
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.99 E-value=3.2e-09 Score=86.73 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=64.7
Q ss_pred cchH-HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh----------cChhhHHHHHHHHHHhHHHHHHH
Q 010799 5 ATIV-PVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEI----------NDVSPKLLNAVSQVQDITDTFRI 73 (501)
Q Consensus 5 ~~v~-~v~kl~~~l~~e~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~----------~~~~~~l~~~~~~~edllD~~~~ 73 (501)
|+|+ +++||.+++.+|+.++.++.++++.++.+|+.|++++.+++. +.|+.+||+++||+||+||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 999999999999999999999999999999999999987754 23999999999999999999998
Q ss_pred Hhh
Q 010799 74 ENC 76 (501)
Q Consensus 74 ~~~ 76 (501)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 753
No 22
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2.5e-09 Score=104.46 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=96.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+|+|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++ ..........+-+++.+..... ..+.+++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence 4679999999999999986543 23399999999999999999988 3322211112200333322221 11222222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS 477 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~ 477 (501)
.+.... ..+ .+++.++|+||++. ...++.|...+.. ...++.+|+||.... +...+.+.
T Consensus 95 ~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 95 HFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHhh
Confidence 221000 011 34588999999986 3445566666655 456788888886642 22222224
Q ss_pred CcceeCCCCChHHHHHHHHHhh
Q 010799 478 IFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 478 ~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+.+++++.++..+++.+.+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHH
Confidence 4589999999999999998754
No 23
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.92 E-value=2.6e-08 Score=109.07 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=37.8
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...++|++.++..+++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998653 33457899999999999999875
No 24
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.86 E-value=4e-08 Score=106.06 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=82.9
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
-.++.|.++..++|.+.+... ....+-+.++|++|+|||.+|+.+++ ..... + +.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f--~~v~~-- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----F--ISIKG-- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----E--EECCH--
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----e--EEecc--
Confidence 356788888888887765321 12346789999999999999999998 33332 2 44321
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
.+++.... ..+...+...+...-...+++|+||+++.. .....|+..+....
T Consensus 545 ------~~l~s~~v------Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 ------PELLTMWF------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------HHHHTTTC------SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ------chhhcccc------chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 12221111 223444444455544567899999998752 11344554444310
Q ss_pred CCCCCEEEEEeCC-hHHHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITRE-AYVARSF---SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~-~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+.-||-||-. ..+...+ +.-...+.++..+.++-.++|..++
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 1222223324432 2222221 1245678888887777777776543
No 25
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.83 E-value=6.7e-09 Score=104.16 Aligned_cols=139 Identities=14% Similarity=0.036 Sum_probs=94.5
Q ss_pred cccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccc----cc--cceeEEEEcCCCC-CHHHH
Q 010799 133 TGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVK----EY--FQCRAWVPVPEEL-ERREL 203 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~----~~--F~~~~wv~vs~~~-~~~~l 203 (501)
..++||+++++++.++|.. .....+.+.|+|++|+||||||+.+++...-. .. ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988864 23345689999999999999999998642111 11 2345677766666 88889
Q ss_pred HHHHHHHhcCCCCc----CcchHHHHHHHHccCCeEEEEEecCCChhH---HHH-HhhcCCCCCCCcEEEEEecccc
Q 010799 204 VTDILKQVGGSKVE----KQLDPQKKLRKLFTENRYLVVIINARTPDI---WDI-LKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 204 ~~~i~~~~~~~~~~----~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~gs~iivTtr~~~ 272 (501)
+..++.++...... ...+....+.+.+..++.+|||||++.... .+. +...+... .+..||+||+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 99999888432111 123456777888877777999999975322 122 22222111 6788999998754
No 26
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.79 E-value=3.3e-08 Score=109.42 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=38.1
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
...++|++.++..+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999997643 234678999999999999998853
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.77 E-value=3.7e-09 Score=94.61 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=84.2
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-------CccceeEEEEeCCCCChHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-------FPCRAWANVYVSQDFDMRS 394 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-------f~~~~w~~v~~~~~~~~~~ 394 (501)
..+|+||+++++.+.+.+.. ...+.+.|+|++|+|||++|+.+++. .... ....++ +++. .
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~------~ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA--LDMG------A 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEE--ECHH------H
T ss_pred ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEE--eeHH------H
Confidence 46799999999999999865 33467899999999999999998873 2211 111222 3221 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhc--CCceEEEEEcCCCChh---------h-HHHHHHhcCCCCCCCCCEEE
Q 010799 395 VFADILRQLTQDEVDEESSLDDLESEFTGIL--YEKRYLVVLDDVHSPG---------A-WYDLKRIFSPQASPIGSRVI 462 (501)
Q Consensus 395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDnv~~~~---------~-~~~l~~~l~~~~~~~~~~iI 462 (501)
+ . ..... ..........+.+.+ .+++.+|+|||++... . ...+...+.. .+..+|
T Consensus 89 ~----~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~i 155 (195)
T 1jbk_A 89 L----V---AGAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----GELHCV 155 (195)
T ss_dssp H----H---TTTCS--HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT----TSCCEE
T ss_pred H----h---ccCCc--cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc----CCeEEE
Confidence 0 0 00000 000111111111111 3457899999997642 1 2333333322 345677
Q ss_pred EEeCChHHHh------hcCCCCcceeCCCCChHHHHHHH
Q 010799 463 LITREAYVAR------SFSPSIFLHQLRPLNEEESGKLF 495 (501)
Q Consensus 463 iTtR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf 495 (501)
.||....... .+.+....+.+++++.++..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 7776554221 11113336899999999987764
No 28
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=1.3e-08 Score=99.48 Aligned_cols=153 Identities=17% Similarity=0.204 Sum_probs=94.8
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|++..++.|..++..+ +.+.+.|+|++|+|||++|+.+++ ..........+-+++++..... +.+.+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~~~~--- 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGI-NVIRE--- 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHH-HTTHH---
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCch-HHHHH---
Confidence 456999999999999998654 334599999999999999999988 3322221222301332211000 00011
Q ss_pred HhccCCCCCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGI--L-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFS 475 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~ 475 (501)
....+... + .+++.++|+|+++. ...++.|...+.. ...++++|+||.... +...+.
T Consensus 96 ---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 ---------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp ---------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHH
T ss_pred ---------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHH
Confidence 11111111 1 14678999999986 3556677776666 456788888887643 111111
Q ss_pred CCCcceeCCCCChHHHHHHHHHhh
Q 010799 476 PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 476 ~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+....+.+++++.++..+++.+.+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHH
Confidence 133488999999999999888654
No 29
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.72 E-value=1e-08 Score=101.17 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=84.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC------CCHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE------LERRELVT 205 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~------~~~~~l~~ 205 (501)
...++||+.+.+.|.+++... +++.|+|++|+|||||++.+.+.. . .+|+..... .+...++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 467999999999999998753 689999999999999999998642 1 567665433 25666777
Q ss_pred HHHHHhcC-----------------CCC---cCcchHHHHHHHHccC-CeEEEEEecCCChh---------HHHHHhhcC
Q 010799 206 DILKQVGG-----------------SKV---EKQLDPQKKLRKLFTE-NRYLVVIINARTPD---------IWDILKYLF 255 (501)
Q Consensus 206 ~i~~~~~~-----------------~~~---~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~---------~~~~l~~~~ 255 (501)
.+...+.. ... ....++...+.+..+. ++++|||||++... .+..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 66665532 000 0111233445444432 48999999996532 233333322
Q ss_pred CCCCCCcEEEEEeccccc
Q 010799 256 PNSSNGSRVILSFQEADA 273 (501)
Q Consensus 256 ~~~~~gs~iivTtr~~~v 273 (501)
.. ..+.++|+|++...+
T Consensus 160 ~~-~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 160 DS-LPNLKIILTGSEVGL 176 (350)
T ss_dssp HH-CTTEEEEEEESSHHH
T ss_pred Hh-cCCeEEEEECCcHHH
Confidence 21 247889999887553
No 30
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.71 E-value=9.6e-08 Score=95.72 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=96.5
Q ss_pred ccccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDI 207 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i 207 (501)
+..++||+.+++.|.+++.. ..+..+.+.|+|.+|+|||||++.+.+...-... -..+|+..+...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 36799999999999999875 2223448999999999999999999854321111 234677777777888999999
Q ss_pred HHHhcCCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCC--hhHHHHHhhcCCCCC----CCcEEEEEeccccc
Q 010799 208 LKQVGGSKVE---KQLDPQKKLRKLFT--ENRYLVVIINART--PDIWDILKYLFPNSS----NGSRVILSFQEADA 273 (501)
Q Consensus 208 ~~~~~~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~iivTtr~~~v 273 (501)
+..++..... ...+....+...+. ++..+||||++.. ......+...+.... .+..||+||+....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9988654322 12234455555553 5688999999865 344555555543211 46778888887654
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.70 E-value=3.1e-08 Score=108.48 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=81.7
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..+++|.++..+.|.+.+... -...+.+.++|++|+|||+||+.++. .....| +. ++.+.-.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~--~~~~~~---i~--v~~~~l~ 548 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF---IS--IKGPELL 548 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH--HHTCCC---CC--CCCSSST
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH--HhCCCE---EE--EechHhh
Confidence 456788888888888776421 12335789999999999999999998 443333 11 2221110
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
+ ... ......+...+...-...+.+|+||+++.. ..+..++..+....
T Consensus 549 ~--------------~~~--g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 549 T--------------MWF--GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp T--------------CCT--TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred h--------------hhc--CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 0 000 111112222222222223578889997641 11234444443311
Q ss_pred CCCCCEEEEEeCCh-HHHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREA-YVARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~-~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..||.||... .+...+.. ....+.++..+.++-.++|..++
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 12233445555432 22222221 23577888889888888887654
No 32
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=1.7e-08 Score=100.94 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=92.7
Q ss_pred ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccccc---ceeEEEEcCCCCCHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF---QCRAWVPVPEELERRELVTD 206 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F---~~~~wv~vs~~~~~~~l~~~ 206 (501)
+..++||+.+++.|.+++... ......+.|+|++|+||||||+.+++. ....| -..+|+..+...+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 468999999999999998752 334568899999999999999999853 22222 23467766666677888888
Q ss_pred HHHHhcCCCCcC---cchHHHHHHHHcc--CCeEEEEEecCCCh------hHHHHHhhcCCC-CCCCcEEEEEeccccch
Q 010799 207 ILKQVGGSKVEK---QLDPQKKLRKLFT--ENRYLVVIINARTP------DIWDILKYLFPN-SSNGSRVILSFQEADAA 274 (501)
Q Consensus 207 i~~~~~~~~~~~---~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~iivTtr~~~va 274 (501)
++.+++...... ..+....+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 888876532221 2233455556654 45899999998642 233333332211 23356678888876543
No 33
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.70 E-value=4.8e-08 Score=97.79 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=93.0
Q ss_pred ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccc---c-cceeEEEEcCCCCCHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKE---Y-FQCRAWVPVPEELERRELVT 205 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~---~-F~~~~wv~vs~~~~~~~l~~ 205 (501)
+..++||+.+++.+.++|... ......+.|+|++|+||||||+.+++...-.. . --..+|+......+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 367999999999999998642 33456788999999999999999986431110 0 12346777778888999999
Q ss_pred HHHHHhcCCCCcC---cchHHHHHHHHc--cCCeEEEEEecCCChhH----HHHH---hhcCCCC--CCCcEEEEEeccc
Q 010799 206 DILKQVGGSKVEK---QLDPQKKLRKLF--TENRYLVVIINARTPDI----WDIL---KYLFPNS--SNGSRVILSFQEA 271 (501)
Q Consensus 206 ~i~~~~~~~~~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~iivTtr~~ 271 (501)
.++.+++...... ..+....+...+ .+++.+||||++..... .+.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999997643221 223455666666 35688999999975321 1222 2222111 3456788888765
Q ss_pred c
Q 010799 272 D 272 (501)
Q Consensus 272 ~ 272 (501)
.
T Consensus 178 ~ 178 (387)
T 2v1u_A 178 G 178 (387)
T ss_dssp T
T ss_pred c
Confidence 4
No 34
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.69 E-value=4.7e-08 Score=95.20 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=95.3
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc-cCCcc-ceeEEEEeCCCCChHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPC-RAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~-~~w~~v~~~~~~~~~~~~~~i 399 (501)
..+++|++..++.|.+++..+ +.+.+.++|++|+|||++|+.+++ ... ..+.. .+. ++++.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~--~~~~~~~~~------- 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIE--MNASDERGI------- 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEE--EETTSTTCT-------
T ss_pred HHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEE--EeCccccCh-------
Confidence 467999999999999988653 223489999999999999999987 332 12211 122 443321110
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799 400 LRQLTQDEVDEESSLDDLESEFTGI--L-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS 473 (501)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~ 473 (501)
....+....+... + .+++.++|+|+++. ....+.|...+.. ...++.+|+||.... +...
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM--YSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh--cCCCCeEEEEeCChhhcchH
Confidence 0111111222111 1 24578999999986 3445667777766 566778888876543 2222
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+.+....+.+.+++.++..+++.+.+
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHH
Confidence 22244589999999999999887654
No 35
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.65 E-value=3.6e-08 Score=97.50 Aligned_cols=130 Identities=11% Similarity=0.076 Sum_probs=78.9
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-----CCHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-----LERRELVTD 206 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-----~~~~~l~~~ 206 (501)
...++||+++.+.|.+ +.. +++.|+|++|+|||||++.+.+... . ..+|+..... .+...++..
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHH
Confidence 4679999999999999 753 5899999999999999999986432 1 2478876542 345555555
Q ss_pred HHHHhcC-------------C-------C-C-c------Ccch---HHHHHHHHccCCeEEEEEecCCCh-----hHHHH
Q 010799 207 ILKQVGG-------------S-------K-V-E------KQLD---PQKKLRKLFTENRYLVVIINARTP-----DIWDI 250 (501)
Q Consensus 207 i~~~~~~-------------~-------~-~-~------~~~~---~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~ 250 (501)
+.+.+.. . . . . .... +...+.+.-+ ++++|||||+... ..|..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 5444310 0 0 0 0 0111 2233333222 4899999999642 22322
Q ss_pred HhhcCCCCCCCcEEEEEeccccc
Q 010799 251 LKYLFPNSSNGSRVILSFQEADA 273 (501)
Q Consensus 251 l~~~~~~~~~gs~iivTtr~~~v 273 (501)
+...+.+...+.++|+|++....
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHH
Confidence 22222222246789999987653
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=1.4e-07 Score=94.06 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=96.1
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|++..++.|...+..+ ...+.+.|+|++|+|||++|+.+++.......+. . ..+. ....+..+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~--~~~~----~~~~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---A--TPCG----VCDNCREIEQ 84 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---S--SCCS----SSHHHHHHHT
T ss_pred hhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C--CCCc----ccHHHHHHhc
Confidence 356999999999999998653 2345789999999999999999887322111110 0 0000 0001111111
Q ss_pred Hh-------ccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-H
Q 010799 402 QL-------TQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-V 470 (501)
Q Consensus 402 ~l-------~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~ 470 (501)
.. ............++...+... ..+++.++|+|+++. ...++.+...+.. ...+..+|++|.... +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKL 162 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS--CCSSEEEEEEESCGGGS
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc--CCCceEEEEEeCChHhC
Confidence 00 000000011222222222111 124578999999976 4556777777766 555777777776442 2
Q ss_pred HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+.+....+++.+++.++..+++.+.+
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 22222245689999999999999988654
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.63 E-value=1.2e-07 Score=91.00 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=91.0
Q ss_pred cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...+++|.++.++.|.+.+... ....+.+.|+|++|+|||+||+.+++ .....| +. +.+..-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~~---~~--v~~~~~ 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATF---IR--VVGSEL 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCEE---EE--EEGGGG
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EehHHH
Confidence 3577999999999998887431 23456799999999999999999988 333222 11 222111
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
.. ... ..........+.......+.+|+||+++.. ..+..+...+...
T Consensus 88 ~~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------KFI--GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------CST--THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------hcc--chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00 000 001112222233333345689999999753 1222333333221
Q ss_pred CCCCCCEEEEEeCChHHHh-hc-C--CCCcceeCCCCChHHHHHHHHHhhc
Q 010799 454 ASPIGSRVILITREAYVAR-SF-S--PSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~~~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
....+..||.||....... .. . .....+.+++++.++..++|...+.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 1234566777776442111 11 1 1234799999999999999987653
No 38
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.60 E-value=1.5e-07 Score=87.24 Aligned_cols=133 Identities=8% Similarity=-0.025 Sum_probs=75.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
..+++|++..++.|..++.... ..+.+.|+|.+|+||||||+.+++.......+.. ......... ..+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccC
Confidence 3579999999999999998643 2347889999999999999999864322111100 000000000 0000000
Q ss_pred cCC-----CCc-CcchHHHHHHHHc-----cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 212 GGS-----KVE-KQLDPQKKLRKLF-----TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 212 ~~~-----~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
... ... ...+....+.+.+ .+++.+|||||++. ...++.+...+.....++.+|+||+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000 000 0001111222222 35679999999954 5567777766655556788999887543
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=2.6e-07 Score=89.56 Aligned_cols=155 Identities=13% Similarity=0.093 Sum_probs=92.0
Q ss_pred ceeecchhHHHHHHHhhc-------------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 324 AVVSMENDILKLAKLTLN-------------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
+++|.+..++.|.+++.. .......+.|+|++|+|||++|+.+++............+ +.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~--~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL--VSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE--EEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE--EEEcHH-
Confidence 699999999999876532 1234457999999999999999988773211122222233 333210
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCC-----------ChhhHHHHHHhcCCCCCCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVH-----------SPGAWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~-----------~~~~~~~l~~~l~~~~~~~~~ 459 (501)
.+..... ..........+... +..+|+||+++ +...+..|...+.. ...+.
T Consensus 109 -----------~l~~~~~--g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~--~~~~~ 170 (309)
T 3syl_A 109 -----------DLVGQYI--GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--NRDDL 170 (309)
T ss_dssp -----------GTCCSST--TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH--CTTTC
T ss_pred -----------Hhhhhcc--cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc--CCCCE
Confidence 0111000 11112222222222 23589999998 34455666666666 45677
Q ss_pred EEEEEeCChHHHhh--cCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAYVARS--FSP-----SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~~~~~--~~~-----~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+|.||........ ..+ ....+.+++++.++-.+++...+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 88888864322111 011 23789999999999999987764
No 40
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=1.6e-07 Score=95.79 Aligned_cols=147 Identities=12% Similarity=0.181 Sum_probs=87.1
Q ss_pred cccceeecchhH---HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799 321 EVTAVVSMENDI---LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 321 ~~~~fvGR~~~~---~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
...+++|.+..+ ..|...+..+ ..+.+.|+|++|+|||+||+.+++ .....|. - +++.. ..... +.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~---~--l~a~~-~~~~~-ir 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR--YANADVE---R--ISAVT-SGVKE-IR 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH--HTTCEEE---E--EETTT-CCHHH-HH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH--HhCCCeE---E--EEecc-CCHHH-HH
Confidence 346799999888 7788877553 347899999999999999999988 4333321 1 22211 11111 11
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCChH--HHh
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREAY--VAR 472 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~~--~~~ 472 (501)
.+.... .......++.+|+||+++. ...++.|+..+.. + ...+|. ||.+.. +..
T Consensus 93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~-~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---G-TITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT---T-SCEEEEEESSCGGGSSCH
T ss_pred HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---C-ceEEEecCCCCcccccCH
Confidence 111110 0111135678999999986 3445566666655 1 234444 444442 112
Q ss_pred hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 SFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+.+...++.+++++.++..+++.+.+
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHH
Confidence 222245588999999999999988765
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.54 E-value=5.7e-07 Score=82.18 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=75.8
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
..+++|++..++.+.+++.... ...+.|+|.+|+|||+||+.+++... ...+. ..+.+..+.......+...+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHH
Confidence 4578999999999999998653 23388999999999999999985321 11222 22334444443433332222111
Q ss_pred hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
.... ....+++.+|||||+.. ...++.+...+.....++++|+||+..
T Consensus 93 ~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 93 ARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred hccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 1110 00125788999999865 344555555554445677888888654
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.52 E-value=3.7e-07 Score=93.06 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=92.6
Q ss_pred ccccee-ecchhH--HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799 321 EVTAVV-SMENDI--LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 321 ~~~~fv-GR~~~~--~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
.+++|+ |....+ ..+......... ...+.|+|++|+|||+||+.+++ .....+....+-++++. .+..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~ 173 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLN 173 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHH
Confidence 346677 655443 333333333222 67899999999999999999988 44444433222004432 2333
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-----
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA----- 468 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~----- 468 (501)
++...+.... ...+.+.+..+..+|+||+++.. ...+.+...+... ...|..||+||.+.
T Consensus 174 ~~~~~~~~~~----------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 174 DLVDSMKEGK----------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHTTC----------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-HTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHccc----------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEECCCHHHHH
Confidence 4444333221 12333444435679999999753 2344555543221 13467888888763
Q ss_pred ----HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 ----YVARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+...+. .+.++.+++++.++..+++.+.+
T Consensus 243 ~l~~~L~sR~~-~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 243 EFQDRLVSRFQ-MGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp SCCHHHHHHHH-SSBCCBCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc-CCeEEEeCCCCHHHHHHHHHHHH
Confidence 2233232 34688999999999999998765
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.51 E-value=8.9e-07 Score=88.09 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=37.6
Q ss_pred ccceeecchhHHHH---HHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 322 VTAVVSMENDILKL---AKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 322 ~~~fvGR~~~~~~l---~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.++|+|++..+..+ .+.+..+....+.+.|+|++|+|||++|+.+++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 56799999997764 4444444333478999999999999999999883
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.50 E-value=7e-07 Score=84.27 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=86.3
Q ss_pred ccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD 391 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~ 391 (501)
..+++|.+...+.|.+++.. . ....+.+.|+|++|+|||++|+.+++ .....| +. +++..-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--~~~~~~~~ 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPF---LA--MAGAEFVE 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCCE---EE--EETTTTSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--echHHHHh
Confidence 46789999888888766521 1 13346789999999999999999988 333222 22 33332111
Q ss_pred hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------------hhHHHHHHhcCCCC
Q 010799 392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------------~~~~~l~~~l~~~~ 454 (501)
.. .......+...+.......+.+|+||+++.. ..+..++..+....
T Consensus 78 ~~----------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 VI----------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp SS----------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred hc----------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00 0001112223333333345789999999863 11233443333211
Q ss_pred CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..+|.||.... +..... .....+.+++++.++-.++|...+
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 233455666665443 111111 133578899999999999987654
No 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.2e-07 Score=90.81 Aligned_cols=166 Identities=18% Similarity=0.201 Sum_probs=90.2
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcccee-E------------------
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A------------------ 382 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~------------------ 382 (501)
..+++|.+..++.|.+++........ +.|+|++|+||||+|+.++.. ....-.+.+. +
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CCEE
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeeeec
Confidence 46799999999999988822222334 999999999999999988772 1111111000 0
Q ss_pred ---EEEe--CCCC-ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC
Q 010799 383 ---NVYV--SQDF-DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA 454 (501)
Q Consensus 383 ---~v~~--~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~ 454 (501)
.+.. +... .......+++..+..... ..... .+.. +..++-++|||+++. ....+.+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~-- 160 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK-- 160 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH--
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh--
Confidence 0111 0000 000011222222211110 00000 0000 233567999999987 3345566666655
Q ss_pred CCCCCEEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...++++|++|.+.. +...+.+....+++++++.++..+.+.+.+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 445778888876532 222222244689999999999999888654
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.48 E-value=7.5e-07 Score=87.03 Aligned_cols=145 Identities=12% Similarity=0.184 Sum_probs=89.1
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
.++++|.+..++.|.+++..+ .....+.++|++|+|||++|+.+++ .... ..+. ++++.. . .+.+.+.+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~--i~~~~~-~-~~~i~~~~~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMF--VNGSDC-K-IDFVRGPLT 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEE--EETTTC-C-HHHHHTHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEE--Eccccc-C-HHHHHHHHH
Confidence 467999999999999999643 3446788889999999999999988 3321 1223 443321 1 222222221
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh---hHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG---AWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS 477 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~---~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~ 477 (501)
....... ..+++.+|+||+++... ..+.|...+.. ...++++|+||.... +...+.+.
T Consensus 95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~--~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEA--YSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHH--HGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHh--CCCCcEEEEEeCCccccCHHHHhh
Confidence 1111100 12367899999999753 45566665555 345678888876543 11111112
Q ss_pred CcceeCCCCChHHHHHH
Q 010799 478 IFLHQLRPLNEEESGKL 494 (501)
Q Consensus 478 ~~~~~l~~L~~~ea~~L 494 (501)
..++.+++++.++-.++
T Consensus 157 ~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEM 173 (324)
T ss_dssp SEEEECCCCCHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHH
Confidence 35799999998885443
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=2.1e-07 Score=86.44 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=82.1
Q ss_pred ccceeecc---hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSME---NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~---~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.++|+|.+ ..++.+..++... ..+.+.|+|++|+|||+||+.+++ ........+.| +++......
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~--~~~~~~~~~------ 94 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFY--IPLGIHASI------ 94 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EEGGGGGGS------
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EEHHHHHHH------
Confidence 35677643 5566666665432 457899999999999999999988 44333334455 554321110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh--h--HHHHHHhcCCCCCCCCCEEEEEeCChH-----
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG--A--WYDLKRIFSPQASPIGSRVILITREAY----- 469 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~--~--~~~l~~~l~~~~~~~~~~iIiTtR~~~----- 469 (501)
+ . +.. +.+ .++.+|||||++... . .+.+...+.........++|+||+...
T Consensus 95 ----~----~-------~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ----S----T-------ALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----C----G-------GGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----H----H-------HHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 000 011 345689999997631 1 334444332200011225777776432
Q ss_pred ----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 ----VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+. ....+.+++++.++..+++.+.+
T Consensus 155 ~~~~l~~r~~-~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 155 VLPDLVSRMH-WGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp CCHHHHHHHH-HSEEEECCCCCGGGHHHHHHHHH
T ss_pred hhhhhhhHhh-cCceEEeCCCCHHHHHHHHHHHH
Confidence 111111 22689999999999999998764
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=6.8e-07 Score=88.31 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=93.7
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|+++.++.|..++..+.. +.+.|+|++|+|||++|+.+++.......+.. .+..++++...... .+.+...
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 111 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGIS-IVREKVK 111 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHH-HHTTHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchH-HHHHHHH
Confidence 46799999999999999865432 33899999999999999999873211111111 12013333322222 2222222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI 478 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~ 478 (501)
.+........... .....-...+-+|++|+++. ....+.+...+.. .....++|++|.... +...+.+..
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMET--YSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh--cCCCceEEEEeCchhhCcchhhccC
Confidence 2111100000000 00111123557999999876 3445666666655 445677777765432 211111123
Q ss_pred cceeCCCCChHHHHHHHHHhh
Q 010799 479 FLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 479 ~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+.+.+++.++..+.+.+.+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHH
Confidence 478999999999998888754
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.9e-06 Score=84.12 Aligned_cols=156 Identities=12% Similarity=0.116 Sum_probs=92.9
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
..+++.|-++.+++|.+.+.- +-..++-+.++||+|+|||.||+.+++ .....| +. ++.+.-
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~--v~~s~l 218 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IR--VSGAEL 218 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EE--EEGGGG
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eE--EEhHHh
Confidence 457899999999999776632 234457899999999999999999998 444433 11 332211
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
.+ ... ..+...+...+...-...+++|+||+++.. ..+..++..+...
T Consensus 219 ~s--------------k~v--Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 219 VQ--------------KYI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp SC--------------SST--THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hc--------------ccc--chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 11 100 111222223333333456899999999862 1133444444331
Q ss_pred CCCCCCEEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||-... +...+ +.-...+.++..+.++-.++|..++
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 1233445555665432 22221 2246789999999999999987664
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.40 E-value=2.4e-06 Score=83.41 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=89.8
Q ss_pred cccceeecchhHHHHHHHhh----------cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTL----------NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~----------~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++ .....| +. ++++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~--v~~~--- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FS--VSSS--- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EE--EEHH---
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EE--EchH---
Confidence 35779999999999988772 1222346899999999999999999988 433222 11 3221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCC-CC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQA-SP 456 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~-~~ 456 (501)
+ +...... .....+...+...-..++.+|+||+++... ....++..+.... ..
T Consensus 86 ---~----l~~~~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 ---D----LVSKWMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---H----HHTTTGG------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---H----Hhhcccc------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1111110 011112222222233467899999998531 1334444333210 23
Q ss_pred CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhhc
Q 010799 457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRLK 500 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 500 (501)
.+..||.||.... +...+. .....+.++..+.++-.++|..++.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 4555665665432 111111 1346788999999999999987653
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.40 E-value=4.9e-06 Score=80.38 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=92.8
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...+++|.+..++.|.+++.. +-...+.+.|+|++|+|||+||+.+++ .... .+ +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~-----~~--i~v~-- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQA-----NF--ISIK-- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC-----EE--EEEC--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCC-----CE--EEEE--
Confidence 346799999999999887642 123456899999999999999999998 3322 22 3332
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~ 453 (501)
..++. ..+.... ...+...+.......+.+|+||+++... ....++..+...
T Consensus 82 --~~~l~----~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 --GPELL----TMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp --HHHHH----HHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred --hHHHH----hhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 11222 2222111 1222333333334567999999998521 134455444321
Q ss_pred CCCCCCEEEEEeCChH-HHhhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSF-S--PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||.... +.... . .....+.++.++.++-.++|...+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 1234556666776543 22221 1 133578999999999888887664
No 52
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.40 E-value=9.5e-07 Score=86.82 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=89.5
Q ss_pred cccceeecchhHHHHHHHhhcC---CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799 321 EVTAVVSMENDILKLAKLTLNS---SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~---~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
...+|+|++..++.+..++... ....+.+.|+|++|+|||++|+.+++ .....| .. +++.....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~--~~~~~~~~------ 93 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KT--TAAPMIEK------ 93 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EE--EEGGGCCS------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EE--ecchhccc------
Confidence 3577999999999999888542 34456789999999999999999987 433332 22 33322111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC----------------CCCCC
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA----------------SPIGS 459 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~----------------~~~~~ 459 (501)
.......+.. ..+..+|+||+++. ......+...+.... ..++.
T Consensus 94 ----------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 ----------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111122221 13457899999986 344445555443310 01124
Q ss_pred EEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+|.+|.... +...+.+ ....+.+++++.++..+++.+.+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHH
Confidence 5666555432 1111111 33689999999999999888764
No 53
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.40 E-value=6.4e-07 Score=87.40 Aligned_cols=148 Identities=17% Similarity=0.073 Sum_probs=88.3
Q ss_pred ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
..+|+|++..+..+..++.. .....+.+.|+|++|+|||++|+.+++ .....| .+ +++.......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~~---~~--~~~~~~~~~~----- 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVNL---RV--TSGPAIEKPG----- 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCCE---EE--ECTTTCCSHH-----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--EeccccCChH-----
Confidence 46799999999999888742 123346789999999999999999988 332222 33 4433222211
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCC----------------CCCCCE
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQA----------------SPIGSR 460 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~----------------~~~~~~ 460 (501)
++...+...+ .++.+|+||+++.. .....+...+.... ..++..
T Consensus 79 -----------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 79 -----------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -----------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -----------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1222221111 24568999999873 33444444333200 002456
Q ss_pred EEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799 461 VILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 461 iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+|.||.... +...+.. ...++.+++++.++..+++.+.+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHH
Confidence 666665432 2211111 23589999999999999888765
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.35 E-value=1.6e-06 Score=73.99 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=66.9
Q ss_pred ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh
Q 010799 324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL 403 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l 403 (501)
+++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++.. .. ....|- +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~--~~--~~~~~v-~~~~~~~~~----------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RN--AQGEFV-YRELTPDNA----------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS--TT--TTSCCE-EEECCTTTS-----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC--Cc--cCCCEE-EECCCCCcc-----------
Confidence 58999999999998875433334568899999999999999988732 11 111220 333322111
Q ss_pred ccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 404 TQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
... ...+... ..-+|+||+++. ......+...+.. .....++|.||...
T Consensus 66 --------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 011 1111111 224689999986 3445666666654 45567888877643
No 55
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=2.9e-06 Score=81.94 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=91.9
Q ss_pred ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc-ccccCCccceeEEEEeCC-CCChHHHHHHHHHHhc
Q 010799 327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS-YTKKNFPCRAWANVYVSQ-DFDMRSVFADILRQLT 404 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~-~~~~~f~~~~w~~v~~~~-~~~~~~~~~~i~~~l~ 404 (501)
|-++.++.|...+..+. .+...++|++|+|||++|..+++.. ..........+ ++... .... +..+++...+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~--l~~~~~~~~i-d~ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLE--IDPEGENIGI-DDIRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEE--ECCSSSCBCH-HHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEE--EcCCcCCCCH-HHHHHHHHHHh
Confidence 44567778888886543 6899999999999999999987621 11111222233 43322 1111 22233333332
Q ss_pred cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcce
Q 010799 405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLH 481 (501)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~ 481 (501)
.... .+++-++|+|+++. ....+.|+..+.. .++.+.+|++|.+. .+...+. .. ++
T Consensus 76 ~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~-SR-~~ 134 (305)
T 2gno_A 76 YSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK-SR-VF 134 (305)
T ss_dssp SCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH-TT-SE
T ss_pred hccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH-ce-eE
Confidence 2111 24567899999986 4567788888877 56677877777554 3444444 33 99
Q ss_pred eCCCCChHHHHHHHHHhh
Q 010799 482 QLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 482 ~l~~L~~~ea~~Lf~~~~ 499 (501)
++.+++.++..+.+.+.+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887653
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=1.2e-06 Score=85.72 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=85.0
Q ss_pred cccee-ecch--hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 322 VTAVV-SMEN--DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 322 ~~~fv-GR~~--~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.++|+ |... ....+..++.........+.|+|++|+|||+||+.+++ .....-...++ +++. .....
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~--i~~~------~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIY--SSAD------DFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEE--EEHH------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEE--EEHH------HHHHH
Confidence 35566 4333 33444555544333456899999999999999999988 33222112233 4432 23333
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----hHHHHHHhcCCCCCCCCCEEEEEeCChH-----
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----AWYDLKRIFSPQASPIGSRVILITREAY----- 469 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----~~~~l~~~l~~~~~~~~~~iIiTtR~~~----- 469 (501)
+...+... .... +...+. +..+|+||+++... ....+...+... ...+..+|+||.+..
T Consensus 80 ~~~~~~~~------~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 80 MVEHLKKG------TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHT------CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHcC------cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEecCChHHHHH
Confidence 33333221 1111 222221 25699999997632 234444433210 123567888876431
Q ss_pred ----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 470 ----VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 470 ----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+...+. ...++.+++ +.++..+++.+.+
T Consensus 148 l~~~L~sR~~-~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 148 VSDRLVSRFE-GGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp SCHHHHHHHH-TSEEEECCC-CHHHHHHHHHHHH
T ss_pred hhhHhhhccc-CceEEEeCC-CHHHHHHHHHHHH
Confidence 222222 346799999 9999999888765
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.33 E-value=3.5e-07 Score=81.19 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+||+.+++.+.+.+.. ...+.+.|+|++|+|||++|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999855 3346789999999999999999887
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=8.3e-06 Score=81.99 Aligned_cols=156 Identities=16% Similarity=0.137 Sum_probs=91.6
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|-++..++|.+.+.- +-..++-|.++|++|+|||.||+.+++ .....| +. ++.+.-
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~--vs~s~L 279 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IR--VIGSEL 279 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGGG
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EE--EEhHHh
Confidence 456799999999999776521 234568999999999999999999998 444433 11 332211
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
..... ..+...+...+...-...+++|+||+++.. .....++..+...
T Consensus 280 --------------~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 280 --------------VQKYV--GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp --------------CCCSS--SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred --------------hcccC--CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 11110 111222233333333456899999999852 1122334433331
Q ss_pred CCCCCCEEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||-... +...+ +.....+.++..+.++-.++|..++
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 1233444555654332 22221 1246789999999999999987665
No 59
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.32 E-value=1.9e-05 Score=76.95 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=88.6
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.++..+.|.+.+.. .....+.+.|+|++|+|||+||+.+++ .. ....+-.++++.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EA----NNSTFFSISSSDLV 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HT----TSCEEEEEECCSSC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--Hc----CCCcEEEEEhHHHH
Confidence 457899999999998876631 122347899999999999999999998 33 11223013332111
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC-CC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA-SP 456 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~-~~ 456 (501)
... .......+...+...-..++.+|+||+++.. .....++..+.... ..
T Consensus 84 --------------~~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 --------------SKW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp --------------CSS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred --------------hhh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 0112222223333333456789999999863 11233333332210 13
Q ss_pred CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..||.||.... +...+. .....+.++..+.++-.++|..++
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH
Confidence 3445555664332 111111 134678899999999999887764
No 60
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=2.7e-06 Score=80.80 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=81.2
Q ss_pred ceeecchhHHHHHH-------Hhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 324 AVVSMENDILKLAK-------LTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 324 ~fvGR~~~~~~l~~-------~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.++|.+..++++.. .+.. .....+.+.|+|++|+|||+||+.+++ .....| +. ++++..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~--~~~~~~---~~--i~~~~~------ 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFPF---IK--ICSPDK------ 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCSE---EE--EECGGG------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EeCHHH------
Confidence 47788777776665 2321 234567899999999999999999988 322222 11 222210
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hhHHHHHHhcCCCC-CCCCCEEE
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GAWYDLKRIFSPQA-SPIGSRVI 462 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~~~~l~~~l~~~~-~~~~~~iI 462 (501)
+..... ......+...+......+..+|+||+++.. ..+..+...+.... ......||
T Consensus 101 -------~~g~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 -------MIGFSE--TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -------CTTCCH--HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -------hcCCch--HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 000000 000112223333334466889999998642 12233444333210 12234466
Q ss_pred EEeCChHHHhh--cCC-CCcceeCCCCCh-HHHHHHHHH
Q 010799 463 LITREAYVARS--FSP-SIFLHQLRPLNE-EESGKLFQR 497 (501)
Q Consensus 463 iTtR~~~~~~~--~~~-~~~~~~l~~L~~-~ea~~Lf~~ 497 (501)
.||........ ..+ ....+.+++++. ++..+++.+
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 67766643332 221 246789999988 665555543
No 61
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1.4e-06 Score=90.82 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=90.9
Q ss_pred ccceeecchhHHHHHHHhhcC---------------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799 322 VTAVVSMENDILKLAKLTLNS---------------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV 386 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~---------------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~ 386 (501)
..+++|++..++.|..++... .+..+.+.|+|++|+|||++|+.+++ ... + ..+. +++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l~--~-~~i~--in~ 110 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG--Y-DILE--QNA 110 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT--C-EEEE--ECT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--HcC--C-CEEE--EeC
Confidence 467999999999999998541 01347999999999999999999988 331 1 1222 444
Q ss_pred CCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH--hcCCceEEEEEcCCCCh-----hhHHHHHHhcCCCCCCCCC
Q 010799 387 SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG--ILYEKRYLVVLDDVHSP-----GAWYDLKRIFSPQASPIGS 459 (501)
Q Consensus 387 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~--~l~~~r~LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~ 459 (501)
+...+.. .+...+....... +.......... ....++.+|+||+++.. ..+..+...+.. .+.
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----~~~ 180 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----TST 180 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----CSS
T ss_pred CCcchHH-HHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh----cCC
Confidence 4333322 2222222111110 00000000000 12346789999999752 223455554443 133
Q ss_pred EEEEEeCChH---HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAY---VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+|+++.... +.. ..+....+.+++++.++..+++.+.+
T Consensus 181 ~iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp CEEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 4555554322 222 22245579999999999998887654
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=4.3e-06 Score=82.24 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=89.9
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
..+++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+++ .....-....+..++.+....... .++...
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~-ir~~i~ 98 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDV-VRNQIK 98 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHH-HHTHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHH-HHHHHH
Confidence 4668899999999998886532 23389999999999999999988 332211111121133322212111 111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI 478 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~ 478 (501)
.+..... ...+.+-++|+|+++. ....+.|...+.. ....+.+|++|.... +...+.+..
T Consensus 99 ~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 99 DFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIER--YTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhc--CCCCeEEEEEecCccccchhHHhhc
Confidence 1110000 0123467899999875 3445666666655 445667777765432 222222234
Q ss_pred cceeCCCCChHHHHHHHHHhh
Q 010799 479 FLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 479 ~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..+.+.+++.++..+.+.+.+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHH
Confidence 578999999999888777544
No 63
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.30 E-value=8.2e-06 Score=80.01 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=88.9
Q ss_pred chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH------
Q 010799 329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ------ 402 (501)
Q Consensus 329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~------ 402 (501)
++..+.|...+..+ .-.+.+.++|++|+|||++|+.+++.......-. + ..+. .......+...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~--~~c~----~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---H--KSCG----HCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---T--BCCS----CSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---C--CCCC----CCHHHHHHhcCCCCCEE
Confidence 45566777766432 3346899999999999999999887321111000 0 0000 00001111110
Q ss_pred -hccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799 403 -LTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS 473 (501)
Q Consensus 403 -l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~ 473 (501)
+...........+++.. +.+.+ .+++-++|+|+++. ....+.|+..+.. ...++.+|++|.+.. +...
T Consensus 78 ~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE--PPAETWFFLATREPERLLAT 154 (334)
T ss_dssp EECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHH
T ss_pred EEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence 00000001112233322 22222 24577899999986 4556788888877 566777777776653 3333
Q ss_pred cCCCCcceeCCCCChHHHHHHHHHh
Q 010799 474 FSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 474 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
+.+....+.+++++.++..+.+.+.
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHh
Confidence 3335568999999999999888765
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.4e-06 Score=86.01 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=91.8
Q ss_pred ccccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799 320 EEVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388 (501)
Q Consensus 320 ~~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~ 388 (501)
....++.|-++..++|.+.+.. +-..++-|.++||||+|||.||+.+++ .....| +. ++.+.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~--v~~s~ 250 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LK--LAAPQ 250 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGG
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EE--Eehhh
Confidence 3568899999999999876422 224567899999999999999999998 444333 11 33221
Q ss_pred CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCC
Q 010799 389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSP 452 (501)
Q Consensus 389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~ 452 (501)
- ..... ..+...+...+...-...+++|+||+++.. .....++..+..
T Consensus 251 l--------------~~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 251 L--------------VQMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp G--------------CSSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred h--------------hhccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 1 11110 111111222222222345899999998741 112345555544
Q ss_pred CCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 453 QASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 453 ~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.....+..||.||.... +...+-. ....+.++..+.++-.++|..++
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 21233445555665443 3222211 34588999999999888887654
No 65
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.2e-06 Score=83.58 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=93.2
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|-++.+++|.+.+.- +-..++-|.++||+|+|||.||+.+++ .....| +. ++.+.-
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~--v~~s~l 251 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IF--SPASGI 251 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGGT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--Eehhhh
Confidence 357789999999998776632 234558999999999999999999998 443333 12 333221
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
.+ ... ..+...+...+...-...+++|+||+++.. ..+..|+..+...
T Consensus 252 ~s--------------k~~--Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 252 VD--------------KYI--GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp CC--------------SSS--SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cc--------------ccc--hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 11 110 111222223333333456899999999851 1133444444332
Q ss_pred CCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 454 ASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....+..||.||-... +...+-+ -...+.++..+.++-.++|..++
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 1344556777765443 2222221 24578999999998888887654
No 66
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.27 E-value=9e-06 Score=80.42 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=88.0
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++ .....| +. ++++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~--v~~~--- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FS--VSSS--- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EE--EEHH---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--eeHH---
Confidence 457899999999999887631 112335789999999999999999998 332222 11 2221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCC-CC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQA-SP 456 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~-~~ 456 (501)
+ +.... . ......+...+.......+.+|+||+++... ....++..+.... ..
T Consensus 119 ---~----l~~~~----~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ---D----LVSKW----M--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---H----HHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---H----Hhhhh----c--chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1 11110 0 1112222222333333567899999998632 1333443332100 23
Q ss_pred CCCEEEEEeCChH-HHhhc-CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAY-VARSF-SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..||.||.... +...+ ......+.+++++.++-.++|..++
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH
Confidence 3455665665432 11111 1134678899999999999888765
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.26 E-value=1.9e-06 Score=88.58 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=80.9
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-----ccceeEEEEeCCCCChHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-----PCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-----~~~~w~~v~~~~~~~~~~~~~ 397 (501)
+.++||+.++..+...+... ....+.|+|++|+|||++|+.++. .....+ ....+ +.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~--~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRV--MTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCE--ECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeE--EEeeCC--------
Confidence 56999999999999999653 234678999999999999999987 432211 12222 222111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh-----
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR----- 472 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~----- 472 (501)
....+.. ..... ..+...-...+.+|++| ...+..+.|.+.+.. ...++|.+|.......
T Consensus 246 ---~~~~g~~---e~~~~---~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~----g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ---TKYRGEF---EDRLK---KVMDEIRQAGNIILFID--AAIDASNILKPSLAR----GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHH---HHHHHHHTCCCCEEEEC--C--------CCCTTS----SSCEEEEECCTTTTHHHHTTC
T ss_pred ---ccccchH---HHHHH---HHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC----CCEEEEecCCHHHHHHHhhcC
Confidence 0000000 11222 22333333567899999 222222334333332 2456666655443111
Q ss_pred -hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 473 -SFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+.+...++.+++++.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111134579999999999999988643
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.26 E-value=8.3e-06 Score=81.78 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=84.3
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.++. .....| +. +++..-.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~~---~~--v~~~~l~ 185 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNATF---FN--ISAASLT 185 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCEE---EE--ECSCCC-
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCcE---EE--eeHHHhh
Confidence 357799999999999888722 112346899999999999999999988 332222 12 3332211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhc---CCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIF---SPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l---~~~~ 454 (501)
+ . .. ......+...+...-...+.+|+||+++.. .....++..+ ...
T Consensus 186 ~--~--------~~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~- 248 (389)
T 3vfd_A 186 S--K--------YV------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA- 248 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c--c--------cc------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-
Confidence 1 0 00 011111222222222345679999999753 1112222222 210
Q ss_pred CCCCCEEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
......||.||.... +...+.+ ....+.++..+.++..+++...+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH
Confidence 123445555665422 1111111 33578899999999999887654
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=2e-06 Score=83.73 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=74.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
..+++|++..++.|.+++..+. .+.+.++|++|+||||+|+.+.+.-. ...+. ..+++..+....... +++++..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHHHHH
Confidence 3679999999999999997653 22388999999999999999985321 11121 223333333323222 2222222
Q ss_pred hcCCCCcCcchHHHHHHHHc-cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 211 VGGSKVEKQLDPQKKLRKLF-TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
+... ...+ .+++.+|||||++. ...++.+...+.....++.+|+||...
T Consensus 96 ~~~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 96 FAQK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHhc------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 2100 0012 35688999999865 444555554444444577888888653
No 70
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.22 E-value=1.8e-05 Score=76.01 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=85.2
Q ss_pred cccceeecchhHHHHHHHhhcC----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLNS----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.|.+.+... ....+.+.|+|++|+|||++|+.++. .....| +. ++++.-.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~~---~~--i~~~~l~ 91 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSATF---LN--ISAASLT 91 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCEE---EE--EESTTTS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EE--eeHHHHh
Confidence 4577999999999998877321 12346899999999999999999988 332222 22 3432211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHH---hcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKR---IFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~---~l~~~~ 454 (501)
. ... ..........+.......+.+|+||+++.. .....++. .++...
T Consensus 92 ~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 92 S--------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp S--------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred h--------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 1 000 111111222222222346789999999652 11122322 233200
Q ss_pred CCCCCEEEEEeCChH-----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-----VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+.+..||.||.... +... ....+.++..+.++..+++...+
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R---~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRR---FTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHH---CCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhh---CCeEEEeCCcCHHHHHHHHHHHH
Confidence 123455666776532 2222 33577888888888888876653
No 71
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.20 E-value=4.7e-06 Score=85.74 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=92.6
Q ss_pred ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..+++|.+..+++|.+++... ....+.+.|+|++|+|||++|+.+++ .....| +. +++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~--vn~~--- 272 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGP--- 272 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EE--EEHH---
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EE--EEch---
Confidence 457999999999998887432 34456899999999999999999988 332222 22 3321
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPI 457 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~ 457 (501)
++...+. ..........+.....+.+.+|+||+++.. ..+..|+..+.......
T Consensus 273 -------~l~~~~~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 -------EIMSKLA------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp -------HHHTSCT------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred -------Hhhhhhc------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1111111 111222334444444566789999998431 22334444443211233
Q ss_pred CCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 458 GSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 458 ~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
+..||.||.... +...+.+ ....+.++..+.++-.++|..++
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 455666665442 2222221 33478999999999999998765
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.5e-06 Score=81.98 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=90.7
Q ss_pred ccccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799 320 EEVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388 (501)
Q Consensus 320 ~~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~ 388 (501)
...+++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+.+++ .....| +. ++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~--v~~s~ 251 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LR--IVGSE 251 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EE--EESGG
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EE--EEHHH
Confidence 3568899999999999776532 224457899999999999999999998 444333 11 22221
Q ss_pred CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCC
Q 010799 389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSP 452 (501)
Q Consensus 389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~ 452 (501)
+..... ..+...+...+...-...+++|+||+++.. ..+..++..+..
T Consensus 252 --------------l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 --------------LIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp --------------GCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred --------------hhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 111110 111122222233333356899999998751 112334433322
Q ss_pred CCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 453 QASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 453 ~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.....+..||.||-... +...+-. ....+.++..+.++-.++|..++
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 11233445555664433 3333321 23468899999999889887665
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.20 E-value=3.9e-06 Score=92.87 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=83.0
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CCccceeEEEEeCCCCChHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NFPCRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f~~~~w~~v~~~~~~~~~~~~ 396 (501)
.++++||++++..+.+.+... ..+.+.|+|++|+|||+||+.+++ .... ......+-.++++.- .
T Consensus 169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l------~ 238 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSL------L 238 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC----------
T ss_pred CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHh------h
Confidence 456999999999999998653 234678999999999999999987 3322 111222200322111 0
Q ss_pred HHHHHHhccCCCCCCCCHHHHH-HHHHHhcC-CceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799 397 ADILRQLTQDEVDEESSLDDLE-SEFTGILY-EKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI 464 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~-~~l~~~l~-~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT 464 (501)
. .. . ......... ..+..... +.+.+|+||+++... ..+.+...+.. .+..+|.+
T Consensus 239 ~-------g~-~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~----~~i~~I~a 305 (854)
T 1qvr_A 239 A-------GA-K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----GELRLIGA 305 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT----TCCCEEEE
T ss_pred c-------cC-c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC----CCeEEEEe
Confidence 0 00 0 001122222 22222222 367899999998632 11234444433 23446655
Q ss_pred eCChHH-----HhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 465 TREAYV-----ARSFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 465 tR~~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
|..... ...+.+....+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 554432 1222223456999999999999998643
No 74
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.19 E-value=2.5e-05 Score=79.65 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=88.7
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++ .. .+..+ +.+....
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~----~~~~~--~~v~~~~ 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EA----NNSTF--FSISSSD 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HC----CSSEE--EEECCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--Hc----CCCCE--EEEeHHH
Confidence 457899999999999887621 112347899999999999999999998 33 12233 3333211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC-CC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA-SP 456 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~-~~ 456 (501)
+. ....... ......++. ..-...+.+|+||+++.. .....++..+.... ..
T Consensus 204 ----l~----~~~~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 ----LV----SKWLGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HH----hhhcchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11 1111110 112222222 222346789999999863 11233444333210 13
Q ss_pred CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..||.||.... +...+. .....+.++..+.++..++|..++
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH
Confidence 4556666665432 111111 134578899999999998887765
No 75
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.19 E-value=4.9e-06 Score=82.39 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=87.2
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++. .....| +. ++++.-.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~--i~~~~l~ 154 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGATF---FS--ISASSLT 154 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCEE---EE--EEGGGGC
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCeE---EE--EehHHhh
Confidence 456799999999999888742 123457899999999999999999988 332222 22 4433211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHH-HHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC--
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLE-SEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA-- 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~-- 454 (501)
+ ... . ...... ..+.......+.+|+||+++.. ..+..++..+....
T Consensus 155 ~--------------~~~--g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 155 S--------------KWV--G-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp C--------------SST--T-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred c--------------ccc--c-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 1 000 0 011111 2222222345789999998542 12334444333200
Q ss_pred CCCCCEEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..||.||.... +.....+ ....+.++.++.++..+++...+
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 123445555665432 2111111 33578899999999888887654
No 76
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.19 E-value=8.6e-06 Score=76.62 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=86.6
Q ss_pred cccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.+.+.+.. . ....+.+.|+|++|+|||+||+.+++ .....| +. ++...-.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--i~~~~~~ 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FT--ISGSDFV 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EE--ECSCSST
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCCE---EE--EeHHHHH
Confidence 457899999888887665421 1 12235689999999999999999988 332222 22 3322111
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
+. . .......+...+.......+.++++|+++.. ..+..++..+....
T Consensus 83 ~~--------------~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 83 EM--------------F--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TS--------------C--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HH--------------h--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00 0 0112233334444444456789999998431 12233333333210
Q ss_pred CCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..||.||.... +.....+ ....+.++..+.++-.+++...+
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 233455666665543 2222211 23577888888888888776653
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.18 E-value=6.1e-06 Score=78.01 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=34.5
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++|+|.+..+.++.+.+..-......+.|+|++|+|||++|+.+++
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 46689999999998877643223336788999999999999999987
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.10 E-value=1.6e-05 Score=76.77 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=85.3
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ 402 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~ 402 (501)
++++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++.. ...-...+. +++.... ..++.. .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~--v~~~~~~--~~l~~~---~ 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS--ARSDRPLVT--LNCAALN--ESLLES---E 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCE--EECSSCC--HHHHHH---H
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEE--EeCCCCC--hHHHHH---H
Confidence 358999999999988885533444678899999999999999988732 111112233 5554322 222222 2
Q ss_pred hccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH-
Q 010799 403 LTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY- 469 (501)
Q Consensus 403 l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~- 469 (501)
+.+..... ..........+... ..-+|+||+++. ......|+..+.... .....+||.||....
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~ 149 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA 149 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH
T ss_pred hcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH
Confidence 22211100 00000000111111 124688999987 344555665554310 023577888776531
Q ss_pred -----------HHhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799 470 -----------VARSFSPSIFLHQLRPLN--EEESGKLFQ 496 (501)
Q Consensus 470 -----------~~~~~~~~~~~~~l~~L~--~~ea~~Lf~ 496 (501)
+...+ ....+.+++|. .+|...|+.
T Consensus 150 ~~v~~g~fr~~L~~Rl--~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 150 EEVSAGRFRQDLYYRL--NVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHTSSCHHHHHHH--SSEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHhCCcHHHHHhhc--CeeEEeccCHHHhHhhHHHHHH
Confidence 11111 24457899998 566655554
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.09 E-value=3e-06 Score=72.13 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=34.3
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-+++|++..++++.+.+..-......|.|+|++|+|||++|+.+++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4589999999999888753222335688999999999999999877
No 80
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=1.1e-05 Score=78.19 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=89.4
Q ss_pred cceeecchhHHHHHHHhhcC------C-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 323 TAVVSMENDILKLAKLTLNS------S-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.+++|.+..++.+...+... . .....+.|+|++|+|||++|+.++. .....-...+. ++++...... .
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~--~~~~~~~~~~-~ 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIR--IDMTEYMEKH-A 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEE--EEGGGCCSTT-H
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEE--eecccccccc-c
Confidence 45889999999998887542 1 1235899999999999999999887 33222222334 5554322211 1
Q ss_pred HHHHHHHhccCCCCCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799 396 FADILRQLTQDEVDEESS-LDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL 463 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi 463 (501)
...+ ++......... ...+...+.. ....+|+||+++. ...+..|+..+.... ...++.+|.
T Consensus 92 ~~~l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 92 VSRL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHHH---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred HHHh---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 1111 11111100101 1122222221 2346999999986 344555555443300 002344777
Q ss_pred EeCCh---------------HH--------Hhhc-----CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 464 ITREA---------------YV--------ARSF-----SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 464 TtR~~---------------~~--------~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
||... .+ ...+ .....++.+.+++.++..+++...+
T Consensus 166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 77651 10 1111 1133578889999999888887643
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.07 E-value=5.9e-05 Score=82.41 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=88.2
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC------CccceeEEEEeCCCCChHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN------FPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------f~~~~w~~v~~~~~~~~~~~ 395 (501)
.++++||+.++..+.+.|... ....+.|+|++|+|||++|+.++. ..... ....+| ... +..+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~---~~~----~~~l 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIY---SLD----IGSL 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEE---ECC----CC--
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEE---EEc----HHHH
Confidence 456999999999999998653 345678999999999999999887 33211 122222 111 0000
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh--------hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP--------GAWYDLKRIFSPQASPIGSRVILITR 466 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~--------~~~~~l~~~l~~~~~~~~~~iIiTtR 466 (501)
+... . .....+.....+...+ ..++.+|+||+++.. ...+. ...+.......+..+|.+|.
T Consensus 254 -------~~~~-~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~-~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp --------CCC-C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHH-HHHHSSCSSSCCCEEEEEEC
T ss_pred -------hccc-c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHH-HHHHHHHHhCCCeEEEEEeC
Confidence 0000 0 1112333333333333 345789999999864 12221 12222111234566677766
Q ss_pred ChHHHhhc------CCCCcceeCCCCChHHHHHHHHHh
Q 010799 467 EAYVARSF------SPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 467 ~~~~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
........ .+....+.+++++.++..+++...
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 54432111 112347899999999999888754
No 82
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.4e-05 Score=80.28 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=85.4
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|-++..++|.+.+.. +-..++-+.++||+|+|||.||+.+++ .....| +. ++.+.-
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~--v~~~~l 242 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IR--VNGSEF 242 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EE--EEGGGT
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EE--Eecchh
Confidence 357899999999998776532 234567899999999999999999998 443333 11 333221
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ 453 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~ 453 (501)
.+ ... ..+...+...+...-...+++|++|+++.. ..+..|+..+...
T Consensus 243 ~~--------------~~~--Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 243 VH--------------KYL--GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp CC--------------SSC--SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hc--------------ccc--chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 11 000 111222233333333456899999998641 1133344333321
Q ss_pred CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCC-ChHHHHHHHHHh
Q 010799 454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPL-NEEESGKLFQRR 498 (501)
Q Consensus 454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L-~~~ea~~Lf~~~ 498 (501)
....+..||.||-... +...+- .....+.++.+ +.++-.++|..+
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 1234455666665432 222221 12346778655 455555566544
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=3.6e-06 Score=76.04 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=65.1
Q ss_pred ccceeecch----hHHHHHHHhhcCCC--CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799 322 VTAVVSMEN----DILKLAKLTLNSSD--KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395 (501)
Q Consensus 322 ~~~fvGR~~----~~~~l~~~L~~~~~--~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~ 395 (501)
.++|++... .++.+.+++..... ..+.+.|+|++|+|||+||+.+++ ........+.| +++. .+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~--~~~~------~~ 93 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLI--VYVP------EL 93 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEE--EEHH------HH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EEhH------HH
Confidence 355666543 44455555543322 227899999999999999999988 44444444556 5542 33
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhh--HHHHHH-hcCCCCCCCCCEEEEEeCCh
Q 010799 396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGA--WYDLKR-IFSPQASPIGSRVILITREA 468 (501)
Q Consensus 396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~--~~~l~~-~l~~~~~~~~~~iIiTtR~~ 468 (501)
...+...... .........+.+. -+|||||++. ... ...++. .+... ...+.++|+||...
T Consensus 94 ~~~~~~~~~~------~~~~~~~~~~~~~-----~~lilDei~~~~~~~~~~~~ll~~~l~~~-~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 94 FRELKHSLQD------QTMNEKLDYIKKV-----PVLMLDDLGAEAMSSWVRDDVFGPILQYR-MFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHHC---------CCCHHHHHHHHHS-----SEEEEEEECCC---CCGGGTTHHHHHHHH-HHTTCCEEEEESSC
T ss_pred HHHHHHHhcc------chHHHHHHHhcCC-----CEEEEcCCCCCcCCHHHHHHHHHHHHHHH-HhCCCCEEEEcCCC
Confidence 3333332211 1123333333322 3899999954 221 121221 22110 12356788888743
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.2e-05 Score=75.78 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=72.8
Q ss_pred ccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccc------ccceeEEEEcCCCCCHHHHHH
Q 010799 134 GILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKE------YFQCRAWVPVPEELERRELVT 205 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~------~F~~~~wv~vs~~~~~~~l~~ 205 (501)
.+.||+++.++|...|... ....+.+-|+|.+|+|||++++.|.+.-.-.. .| ..+.|.-..-.+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 3789999999999888752 34567789999999999999999986432111 12 234555556678888999
Q ss_pred HHHHHhcCCCCc--CcchHHHHHHHHc---cCCeEEEEEecCCC
Q 010799 206 DILKQVGGSKVE--KQLDPQKKLRKLF---TENRYLVVIINART 244 (501)
Q Consensus 206 ~i~~~~~~~~~~--~~~~~~~~l~~~l---~~kr~LlVlDdv~~ 244 (501)
.|++++.+.... ...+....+...+ .++.++++||++..
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 999999654221 1112223333333 45678999999864
No 85
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=8.6e-06 Score=79.24 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=72.2
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccccccc-ceeEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF-QCRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
..+++|++..++.|.+++.... .+.+.++|.+|+||||+|+.+++.-. ...+ ...+.+..+...... .+...+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 99 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKE 99 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHHHHHH
Confidence 3579999999999999998653 33488999999999999999985321 1111 112223222211110 11111111
Q ss_pred hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
+... .....+++.++|+|++.. ...++.+...+.....++++|+||...
T Consensus 100 ~~~~------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 100 FART------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp HHHS------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhh------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 0000 001125778999999864 445666665554445578888888654
No 86
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.99 E-value=2.2e-05 Score=80.18 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=89.3
Q ss_pred cccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.++.++++.+.+.. . ..-++-+.|+|++|+|||+||+.++. .....| +. ++++.-.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~--is~~~~~ 86 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FH--ISGSDFV 86 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EE--EEGGGTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---ee--CCHHHHH
Confidence 457799999988888766521 1 12235689999999999999999988 333222 22 3333221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
... . ..........+.......+.+|+||+++.. ..+..++..+....
T Consensus 87 ~~~----------~------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 87 ELF----------V------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp TCC----------T------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred HHH----------h------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 110 0 001122334444444567899999998652 12344444332210
Q ss_pred CCCCCEEEEEeCChHHH-hhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAYVA-RSF-S--PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~~~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
...+..||.||...... ... . .....+.+++.+.++-.++|..++
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 13355666677655322 111 1 123478899999888888876654
No 87
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.99 E-value=1.2e-05 Score=87.98 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=81.4
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CCccceeEEEEeCCCCChHHHHH
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NFPCRAWANVYVSQDFDMRSVFA 397 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f~~~~w~~v~~~~~~~~~~~~~ 397 (501)
+.++||+++++.+...|... ....+.|+|++|+|||++|+.+++ .... ......+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~--~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRV--MTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCE--ECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeE--EEecc---------
Confidence 56999999999999999653 334688999999999999999987 3311 1111112 11111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh-----
Q 010799 398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR----- 472 (501)
Q Consensus 398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~----- 472 (501)
..... ......+...+.......+.+|++| ...+..+.+.+.+.. ...++|.||.......
T Consensus 245 --g~~~~------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~----~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKYR------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR----GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS----SSCEEEEECCTTTTHHHHTTC
T ss_pred --ccccc------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhc----CCEEEEeCCChHHHHHHhhcc
Confidence 00000 0011122333333444677899999 222222333333322 3456666665444211
Q ss_pred -hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799 473 -SFSPSIFLHQLRPLNEEESGKLFQRR 498 (501)
Q Consensus 473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~ 498 (501)
.+.+....+.+++++.++..++|...
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 11113357999999999999998854
No 88
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.98 E-value=2.1e-05 Score=75.92 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred cceeecchhHHHHHHHhhc------------CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLN------------SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999887753 112346788999999999999999988
No 89
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.98 E-value=4.9e-06 Score=78.82 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=84.2
Q ss_pred cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.+..++.+.+.+.. +....+.+.|+|++|+|||+||+.+++ .....| +. ++++.-.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--v~~~~~~ 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPF---FS--MGGSSFI 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCC---CC--CCSCTTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--echHHHH
Confidence 346799999999888876631 112234588999999999999999988 333322 11 2221111
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-----------------hHHHHHHhcCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-----------------AWYDLKRIFSPQ 453 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-----------------~~~~l~~~l~~~ 453 (501)
+. +.... ......++.... ...+.+|+||+++... .+..++..+...
T Consensus 82 ~~----------~~~~~---~~~~~~~~~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 82 EM----------FVGLG---ASRVRDLFETAK---KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp TS----------CSSSC---SSSSSTTHHHHH---HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred Hh----------hcchH---HHHHHHHHHHHH---hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 00 00000 111112222222 2356799999996531 122333333221
Q ss_pred C-CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799 454 A-SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 454 ~-~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
. ......||.||.... +..... .....+.+++++.++-.+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 0 112245666665443 111111 123578899999999888887654
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.97 E-value=1.8e-05 Score=70.04 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=65.5
Q ss_pred cceee----cchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccCCc-cceeEEEEeCCCCChHHHH
Q 010799 323 TAVVS----MENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP-CRAWANVYVSQDFDMRSVF 396 (501)
Q Consensus 323 ~~fvG----R~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~-~~~w~~v~~~~~~~~~~~~ 396 (501)
++|++ ....++.+.+++.+-. .....+.|+|++|+|||||++.+++ ....... .+.+ ++ ..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~~~~~--~~------~~~~~ 79 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGIRGYF--FD------TKDLI 79 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCCCCCE--EE------HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCCeEEE--EE------HHHHH
Confidence 44554 3344455555553321 2346899999999999999999988 3321111 2334 33 23444
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAW--YDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~--~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
..+......... ......+. +.-+||||++.. .+.+ ..+...+... ...+..+|+||...
T Consensus 80 ~~~~~~~~~~~~------~~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~-~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 80 FRLKHLMDEGKD------TKFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYR-YNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHTCC------SHHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHH-HHTTCEEEEECCCC
T ss_pred HHHHHHhcCchH------HHHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-HHcCCCEEEEcCCC
Confidence 444433332211 12222222 456899999973 2222 2333333220 12467888888643
No 91
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=7.7e-06 Score=72.61 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=38.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
...++|+++.++.+.+++... ....+.|+|.+|+|||+||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999764 3445789999999999999999853
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.93 E-value=2.9e-05 Score=80.99 Aligned_cols=24 Identities=46% Similarity=0.661 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.-.+++|.|++|+|||||++.++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 336999999999999999999886
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.90 E-value=7.7e-05 Score=76.30 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=37.1
Q ss_pred ccceeecchhHHHHHHHh---hcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 322 VTAVVSMENDILKLAKLT---LNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L---~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
..+++|.++.++.+..++ ..+....+.+.++|++|+|||++|+.+++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 467999999888665544 333334468999999999999999998873
No 94
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.88 E-value=6.9e-05 Score=81.02 Aligned_cols=156 Identities=11% Similarity=0.095 Sum_probs=91.6
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
..+++.|-++.+++|.+.+.- +-..++-|.++|++|+|||+||+.+++ ....+| +. ++++
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~--v~~~-- 272 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGP-- 272 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EE--EEHH--
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EE--EEhH--
Confidence 356789999999998877521 123457899999999999999999998 443332 22 3322
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQASP 456 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~~~ 456 (501)
++. .... ..+...+...+.......+++|+||+++... ....|+..+......
T Consensus 273 --------~l~----sk~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 273 --------EIM----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp --------HHH----SSCT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred --------Hhh----cccc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 111 1111 1123334445555556678999999987521 122233222221012
Q ss_pred CCCEEEEEeCCh-HHHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREA-YVARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~-~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..||.||... .+...+.+ -...++++..+.++-.++|..++
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 234455555443 33333321 34578999999999888887654
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=1.3e-05 Score=70.92 Aligned_cols=118 Identities=13% Similarity=0.151 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHhcCC-CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Q 010799 139 NKEVNKLADFLIRSH-SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE 217 (501)
Q Consensus 139 ~~~~~~l~~~L~~~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~ 217 (501)
....+.+.+++..-. ..-..+.|+|.+|+|||||++.+++.......+.. +++ +..++...+...+......
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-~~~------~~~~~~~~~~~~~~~~~~~ 92 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-YFF------DTKDLIFRLKHLMDEGKDT 92 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-CEE------EHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-EEE------EHHHHHHHHHHHhcCchHH
Confidence 334444444444321 23467899999999999999999864321222222 222 4556665555544322111
Q ss_pred CcchHHHHHHHHccCCeEEEEEecCC--ChhHHH--HHhhcCCC-CCCCcEEEEEeccc
Q 010799 218 KQLDPQKKLRKLFTENRYLVVIINAR--TPDIWD--ILKYLFPN-SSNGSRVILSFQEA 271 (501)
Q Consensus 218 ~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~--~l~~~~~~-~~~gs~iivTtr~~ 271 (501)
. +.+.+. +.-+|||||++ ..+.|. .+...+.. ...|..||+||...
T Consensus 93 ---~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 ---K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 222222 34588999997 334442 22222211 12467788888543
No 96
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.84 E-value=2.9e-05 Score=75.03 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=67.5
Q ss_pred ccccchhhHHHHHHHHhcC-------------CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799 134 GILDLNKEVNKLADFLIRS-------------HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER 200 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~~~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~ 200 (501)
+++|.+..++.|.+++..- ......+-++|.+|+|||+||+.+.+.-.........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5889998888887765421 234456889999999999999877653221111111123333210
Q ss_pred HHHHHHHHHHhcCCCCcC-cchHHHHHHHHccCCeEEEEEecCC-----------ChhHHHHHhhcCCCCCCCcEEEEEe
Q 010799 201 RELVTDILKQVGGSKVEK-QLDPQKKLRKLFTENRYLVVIINAR-----------TPDIWDILKYLFPNSSNGSRVILSF 268 (501)
Q Consensus 201 ~~l~~~i~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~iivTt 268 (501)
.+....... .......+... +.-+|+||++. +......|...+.....+..||.||
T Consensus 109 ---------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ---------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ---------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ---------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111110000 01112222222 23489999986 3344455555555455567788888
Q ss_pred cccc
Q 010799 269 QEAD 272 (501)
Q Consensus 269 r~~~ 272 (501)
....
T Consensus 177 ~~~~ 180 (309)
T 3syl_A 177 YADR 180 (309)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 6553
No 97
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=2.9e-05 Score=65.97 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=33.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|....+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46789999988888887641112233678999999999999999864
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.77 E-value=2.3e-05 Score=67.13 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+.|+|++|+|||+|++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 99
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.75 E-value=9.9e-05 Score=73.16 Aligned_cols=46 Identities=11% Similarity=-0.043 Sum_probs=38.4
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|++..++.|.+.+.... ....+.|+|.+|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999997653 2346789999999999999998753
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.74 E-value=0.00011 Score=66.87 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc---------
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT--------- 404 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~--------- 404 (501)
.|...+..+=..-.++.|.|++|+|||||+..++. . .-..++| ++.....+...+. .+...+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~--i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAY--VDTEGGFSPERLV-QMAETRGLNPEEALSR 79 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEE--EESSCCCCHHHHH-HHHHTTTCCHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEE--EECCCCCCHHHHH-HHHHhcCCChHHHhhc
Confidence 34444432223446999999999999999999876 1 1234667 6665444444333 2322221
Q ss_pred --cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799 405 --QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS 439 (501)
Q Consensus 405 --~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~ 439 (501)
................+...+..+.-+||+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 80 FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 11111111223345555566655578999999865
No 101
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.73 E-value=5.8e-05 Score=73.00 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=71.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
..+++|++..++.|.+++..+. .+.+-++|.+|+||||+|+.+.+.-. ...+. ..+.+..+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~--------- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID--------- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT---------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH---------
Confidence 3568999999999998887643 33388999999999999999985311 11111 11222222211100
Q ss_pred hcCCCCcCcchHHHHHHHH--c-cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 211 VGGSKVEKQLDPQKKLRKL--F-TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
...+....+... + .+++.++|+|++.. ....+.+...+.....++++|+||...
T Consensus 84 -------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 84 -------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 001111111111 1 25678999999864 444566666666555677888887654
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.70 E-value=9.8e-05 Score=62.75 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=34.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 134 GILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
+++|....+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998888642222234679999999999999999864
No 103
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.66 E-value=8.6e-05 Score=77.60 Aligned_cols=162 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799 323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD 398 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~ 398 (501)
.+++|.++..+.+...+. ...-....+.|+|++|+|||+||+.++. .....|.. +++....+...+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~~~-----i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKFVR-----ISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEEEE-----ECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCeEE-----EEecccchhhhhhhH
Confidence 558888887777755442 1222456899999999999999999988 33333322 333322221111111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcCCCCC-------------CCCC
Q 010799 399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFSPQAS-------------PIGS 459 (501)
Q Consensus 399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~~~~~-------------~~~~ 459 (501)
..... ..........+........ +++||+++... ....++..+..... ....
T Consensus 154 ~~~~i-------g~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 154 RRTYV-------GAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHHh-------ccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 11000 0111222333333333334 88899998631 12444444422000 0234
Q ss_pred EEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 460 RVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 460 ~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+|.||.... +...+.+...++.+++++.++-.+++.++.
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 5665655432 111111123478999999999988887653
No 104
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=3.1e-05 Score=69.82 Aligned_cols=122 Identities=8% Similarity=-0.025 Sum_probs=61.9
Q ss_pred cccccch----hhHHHHHHHHhcCCCC--eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH
Q 010799 133 TGILDLN----KEVNKLADFLIRSHSS--LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD 206 (501)
Q Consensus 133 ~~~vg~~----~~~~~l~~~L~~~~~~--~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 206 (501)
.++++.. ...+.+.+++...... ...+.|+|.+|+||||||+.+++... ......++++. ..+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~------~~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV------PELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH------HHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh------HHHHHH
Confidence 3455543 3344555565543221 26788999999999999999996432 22334455543 345555
Q ss_pred HHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHH--Hhh-cCCCC-CCCcEEEEEecc
Q 010799 207 ILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDI--LKY-LFPNS-SNGSRVILSFQE 270 (501)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~--l~~-~~~~~-~~gs~iivTtr~ 270 (501)
+...+... ... .+...+.+. -+|||||++. ...|.. +.. .+... ..+.++|+||..
T Consensus 97 ~~~~~~~~---~~~----~~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQDQ---TMN----EKLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC---C---CCH----HHHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhccc---hHH----HHHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 54433211 111 122222222 3899999954 333321 111 11111 235568888753
No 105
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.62 E-value=8.6e-05 Score=70.76 Aligned_cols=48 Identities=13% Similarity=-0.030 Sum_probs=38.3
Q ss_pred ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+++|.+.+... -....-+-|+|.+|+|||+||+.+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999998887531 123456889999999999999999853
No 106
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.57 E-value=0.00027 Score=68.94 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=83.4
Q ss_pred ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799 322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR 401 (501)
Q Consensus 322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~ 401 (501)
...++|+++.++.+...+..+ ..+.++|++|+|||+||+.+++ .....|. . +.+.......++. .
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~~---~--i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDFH---R--IQFTPDLLPSDLI----G 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCEE---E--EECCTTCCHHHHH----E
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCeE---E--EecCCCCChhhcC----C
Confidence 356899999999998887653 3688999999999999999988 3333321 1 3333333222221 1
Q ss_pred HhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC--hhhHHHHHHhcCCC---------CCCCCCEEEEEeCCh
Q 010799 402 QLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHS--PGAWYDLKRIFSPQ---------ASPIGSRVILITREA 468 (501)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~--~~~~~~l~~~l~~~---------~~~~~~~iIiTtR~~ 468 (501)
....... .... .+..+ ...++++|+++. ......+...+... .......+|.|+...
T Consensus 91 ~~~~~~~--~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQH--KGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETT--TTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCC--CCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1100000 0000 00000 125899999976 33344444433210 012345555555422
Q ss_pred H------HHhh-cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799 469 Y------VARS-FSPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 469 ~------~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
. +... .......+.+++++.++-.+++.+++
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 1 1111 11122358999999999999887764
No 107
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=0.00033 Score=65.51 Aligned_cols=156 Identities=10% Similarity=0.051 Sum_probs=80.7
Q ss_pred cccceeecchhHHHHHHHhhc--C--------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN--S--------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++++|.+....++.++... . -.-.+-+.|+|++|+|||||++.++. .... +.+. ++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~--~~~~---~~i~--~~~~--- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFIT--ASGS--- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTTC---CEEE--EEHH---
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCC---CEEE--eeHH---
Confidence 456789988777777654421 1 01123499999999999999999988 3321 2222 2211
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
+ +..... ......+...+...-...+.++++||++.. .....+...+....
T Consensus 84 ---~----~~~~~~------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 ---D----FVEMFV------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp ---H----HHHSCT------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred ---H----HHHHHh------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 1 111000 000111222222222345689999998531 11233433333310
Q ss_pred CCCCCEEEEEeCChHHH-hhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAYVA-RSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~~~-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
......++.||...... ....+ ....+.++..+.++-.+++...+
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 11222344455554422 11111 34578999999988888887553
No 108
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00027 Score=68.64 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=71.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV 211 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~ 211 (501)
..+++|.+..+..|.+++.... ...++-+.|.+|+|||++|+.+.+... ...+.+..+. .... .++..+..+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHHHH
Confidence 4679999999999999998543 335677788899999999999985321 1123333333 2222 222222221
Q ss_pred cCCCCcCcchHHHHHHHHccCCeEEEEEecCCChh---HHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPD---IWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
... ....+++-+|+||++..-. ..+.+...+.....++++|+||....
T Consensus 97 ~~~-------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 97 ASA-------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHB-------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred Hhh-------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 100 0012467899999997643 34445444433234677888876543
No 109
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.55 E-value=0.00057 Score=70.19 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=84.0
Q ss_pred cccceeecchhHHHHHHHhh---cC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTL---NS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
...+++|.++.+.++.+.+. .. -.-.+-+.|+|++|+|||+||+.++. .... ..+. ++.+.-.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~~---~~i~--i~g~~~~ 101 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFIT--ASGSDFV 101 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC---CEEE--EEGGGGT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEE--EehhHHH
Confidence 35679999988777766542 11 01124599999999999999999988 3332 1223 3332111
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC----CceEEEEEcCCCCh----------------hhHHHHHHhc
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY----EKRYLVVLDDVHSP----------------GAWYDLKRIF 450 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~----~~r~LlVlDnv~~~----------------~~~~~l~~~l 450 (501)
+. ........+...+. ..+.++++|+++.. ..+..++..+
T Consensus 102 ~~--------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 102 EM--------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp SS--------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred Hh--------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 10 00111222333332 23579999998631 1123444444
Q ss_pred CCCCCCCCCEEEEEeCChHHHh-hcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 451 SPQASPIGSRVILITREAYVAR-SFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 451 ~~~~~~~~~~iIiTtR~~~~~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
..........+|.||....... ...+ ....+.++..+.++-.++|..++
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 4310123344555665554321 1111 34578999999998888887654
No 110
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00013 Score=71.57 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=70.7
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHH
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQ 210 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~ 210 (501)
..+++|++..++.|..++..... ..+.++|.+|+||||+|+.+.+.-.....+.. ...+..+....... +.+.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence 46789999999999999876532 23789999999999999999854211111211 12222233222222 2222222
Q ss_pred hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
+........... .....-.++.-+|++|++.. ....+.+...+.......++|++|..
T Consensus 113 ~~~~~~~~~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 113 FARLTVSKPSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp HHHSCCCCCCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred Hhhhcccccchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 211100000000 00111123556899999753 33344455444333446677777743
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.48 E-value=0.00083 Score=64.26 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999998
No 112
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.46 E-value=0.00036 Score=69.01 Aligned_cols=48 Identities=6% Similarity=0.031 Sum_probs=36.6
Q ss_pred ccccccchhhHHH---HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNK---LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~---l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|++..++. +.+.+.......+.+-++|.+|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999988776 44555444333467889999999999999999864
No 113
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.46 E-value=0.00099 Score=63.15 Aligned_cols=156 Identities=10% Similarity=0.053 Sum_probs=81.1
Q ss_pred cccceeecchhHHHHHHHhhc--C-------C-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN--S-------S-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF 390 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~--~-------~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~ 390 (501)
..++++|.++...++.++... . + .-.+-+.|+|++|+|||||++.++. ... ...+. ++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~--~~~---~~~i~--~~~~--- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR---VPFIT--ASGS--- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH--HTT---CCEEE--EEHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH--HcC---CCEEE--ecHH---
Confidence 456799998887777665421 0 0 1123489999999999999999988 332 12222 3221
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799 391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA 454 (501)
Q Consensus 391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~ 454 (501)
+ +...... .....+...+...-...+.++++||++.. ..+..+...+....
T Consensus 108 ---~----~~~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 ---D----FVEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ---H----HHHSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ---H----HHHHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1 1110000 00111122222222345689999998531 11233444444310
Q ss_pred CCCCCEEEEEeCChHHH-hhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799 455 SPIGSRVILITREAYVA-RSF-S--PSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~~~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
......++.||...... ... . .....+.++..+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 11122334455544321 111 1 134578999999998888887654
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.45 E-value=0.00044 Score=67.21 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHh----------cCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLI----------RSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~----------~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++.|.+.+. ......+-+-++|.+|+|||+||+.+.+.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999988873 11122456889999999999999999863
No 115
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.42 E-value=0.00068 Score=66.19 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=38.2
Q ss_pred cccceeecchhHHHHHHHhhcC---CCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNS---SDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~---~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....++|.+..++.+...+..+ ......+.|+|++|+||||||+.++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3467899988888887776432 23346799999999999999999988
No 116
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00031 Score=69.13 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=36.0
Q ss_pred ccccccchhhHHHHHHHH-hcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFL-IRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L-~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|.+.....|.+++ .... ... +.|+|.+|+||||||+.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 357899999999988888 4332 223 89999999999999998865
No 117
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.42 E-value=0.00082 Score=68.21 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=32.3
Q ss_pred eecchhHHHHHHHhhcC-----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 326 VSMENDILKLAKLTLNS-----SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~-----~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.|.++-++.+.+.+... .+....|+|.|.+|+|||+|...+...
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 35666667776666421 124568999999999999999998864
No 118
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.41 E-value=0.00012 Score=70.79 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=32.2
Q ss_pred ccceeec----chhHHHHHHHhhcCCC-CceEEEEEecCCCChHHHHHHHHc
Q 010799 322 VTAVVSM----ENDILKLAKLTLNSSD-KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 322 ~~~fvGR----~~~~~~l~~~L~~~~~-~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++|++. ...+..+.+++..... ....+.|+|++|+|||+||..+++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455543 3344455566643222 247899999999999999999988
No 119
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.40 E-value=0.00092 Score=64.22 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=58.9
Q ss_pred ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799 132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER 200 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~ 200 (501)
-.+++|.+..+.+|.+++... -...+.+.++|.+|+|||+||+.+.+.. ... ++.+ +.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v----~~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISI----KG 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEE----CH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEE----Eh
Confidence 457899999888888776521 1234578899999999999999999633 222 2222 33
Q ss_pred HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC
Q 010799 201 RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART 244 (501)
Q Consensus 201 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 244 (501)
..+... ..+. ....+...+.........+|+||++..
T Consensus 83 ~~l~~~----~~g~---~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 83 PELLTM----WFGE---SEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHH----HHTT---CTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHhh----hcCc---hHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 333322 2111 112233344444455678999999863
No 120
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.40 E-value=0.00072 Score=65.64 Aligned_cols=48 Identities=10% Similarity=-0.010 Sum_probs=37.2
Q ss_pred ccccccchhhHHHHHHHHhc---------C-CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---------S-HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---------~-~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++.|.+.+.. . ....+-+-++|.+|+|||+||+.+.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 46789999988888877631 1 123467889999999999999999863
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.40 E-value=0.00021 Score=72.70 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=58.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccce--eEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQC--RAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN 233 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~--~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k 233 (501)
...+.|+|.+|+||||||+.+++. ....|.. .+++ +...+..++...+.... ...+...+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYI------TSEKFLNDLVDSMKEGK-------LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEE------EHHHHHHHHHHHHHTTC-------HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEe------eHHHHHHHHHHHHHccc-------HHHHHHHhcCC
Confidence 567899999999999999999863 3223311 2333 34445555555554321 23344444435
Q ss_pred eEEEEEecCCChh----HHHHHhhcCCC-CCCCcEEEEEecc
Q 010799 234 RYLVVIINARTPD----IWDILKYLFPN-SSNGSRVILSFQE 270 (501)
Q Consensus 234 r~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtr~ 270 (501)
.-+|+|||+.... .-+.+...+.. ...|..||+||.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6799999985322 22233322211 1346788888875
No 122
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.39 E-value=0.00047 Score=64.56 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=35.3
Q ss_pred ccccccchhhHHHHHHHHh---cCC-------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLI---RSH-------SSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..+..|.+++. ..+ ...+-+-++|.+|+|||+||+.+.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999888877766553 111 23355779999999999999999863
No 123
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=0.0013 Score=62.15 Aligned_cols=155 Identities=12% Similarity=0.010 Sum_probs=80.0
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
...++.|-++..+.|.+.+.. +-.-.+-++|+|++|+|||+||+.++. .... ..+. +....-
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~--~~~~---~~i~--i~g~~l 80 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN--ESGL---NFIS--VKGPEL 80 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEE--EETTTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH--HcCC---CEEE--EEcHHH
Confidence 346688888888888765421 011123499999999999999999988 3222 1233 332221
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQAS 455 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~ 455 (501)
.+.. . . .....+..+.+. -...++++++|+++.. .....+...+.....
T Consensus 81 ~~~~--------------~--~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 81 LNMY--------------V--G-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp CSST--------------T--H-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred Hhhh--------------h--h-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence 1100 0 0 001111112121 1235789999998752 112333333332101
Q ss_pred CCCCEEEEEeCChHHH-hhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799 456 PIGSRVILITREAYVA-RSF---SPSIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 456 ~~~~~iIiTtR~~~~~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
....-++.+|....+. ... +.-...+.++..+.++-.++|....
T Consensus 144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2233444556555422 111 1145678899999999998887654
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.39 E-value=0.0009 Score=68.31 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=29.1
Q ss_pred ecchhHHHHHHHhhcC-----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 327 SMENDILKLAKLTLNS-----SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~-----~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
|.++-++.+.+.+... ......|++.|.+|+|||+|...+...
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 4445555555444211 134568999999999999999998853
No 125
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=0.00098 Score=72.91 Aligned_cols=156 Identities=11% Similarity=0.082 Sum_probs=87.3
Q ss_pred cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799 321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD 389 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~ 389 (501)
..++++|.+..+++|.+++.. .-.....+.|+|++|+|||+||+.++. .....| +. +++..
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~--v~~~~- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGPE- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EE--EEHHH-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EE--EEchH-
Confidence 457799999999999888743 223446899999999999999999988 333222 22 33211
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCC
Q 010799 390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASP 456 (501)
Q Consensus 390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~ 456 (501)
+..... ......+...+.......+.++++|+++.. .....+...+......
T Consensus 274 -------------l~~~~~--g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 274 -------------IMSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp -------------HSSSST--THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT
T ss_pred -------------hhhhhh--hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc
Confidence 101000 001122223333333345789999998531 1122333332221012
Q ss_pred CCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799 457 IGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL 499 (501)
Q Consensus 457 ~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 499 (501)
.+..+|.||.... +...+.. ....+.+..++.++-.+++...+
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 3455565665432 2222211 23457888888888888887554
No 126
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.38 E-value=0.00058 Score=67.88 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=35.7
Q ss_pred cceeecchhHHHHHHHhhc----------------------------CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLN----------------------------SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~----------------------------~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++|.+...+.|...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4579999988888776620 112335789999999999999999988
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.38 E-value=0.00034 Score=66.16 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHH-------HHhc-CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLAD-------FLIR-SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~-------~L~~-~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++|.....++++. .+.. .......+-++|.+|+|||+||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 467888777666665 3321 1345677889999999999999999864
No 128
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.34 E-value=0.0013 Score=66.88 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=37.7
Q ss_pred ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++.|.+.+.. .....+-+-++|.+|+|||+||+.+.+.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999998887731 0123467889999999999999999863
No 129
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.28 E-value=0.00029 Score=68.29 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=38.1
Q ss_pred ccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|++..+..+..++.. .......+.|+|.+|+|||+||+.+++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999998888763 1223456789999999999999999853
No 130
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.23 E-value=0.0009 Score=65.98 Aligned_cols=48 Identities=8% Similarity=-0.100 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++.|.+.+.. .....+.+.|+|.+|+|||+||+.+.+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999998887752 1123567889999999999999999853
No 131
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.20 E-value=0.0012 Score=67.01 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=37.7
Q ss_pred ccccccchhhH---HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEV---NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~---~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+ ..|...+.... ...+-++|.+|+||||||+.+.+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 46789998888 67777777653 467889999999999999999853
No 132
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.19 E-value=0.00022 Score=63.36 Aligned_cols=112 Identities=17% Similarity=0.060 Sum_probs=64.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC---CCChHHHHHHHHHHhccC-------CCCCC-----
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ---DFDMRSVFADILRQLTQD-------EVDEE----- 411 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~---~~~~~~~~~~i~~~l~~~-------~~~~~----- 411 (501)
..|.+++..|.||||+|...+. +.-.+=..+.+ +.... .+...++ +..+... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~--vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGV--VQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEE--EESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHH
Confidence 5677777777999999988766 43333333444 32221 2223333 3333210 00000
Q ss_pred --CCHHHHHHHHHHhcCCceE-EEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 412 --SSLDDLESEFTGILYEKRY-LVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 412 --~~~~~~~~~l~~~l~~~r~-LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
..........++.+.+.+| |||||++.. .-..+++...+.. ...+..||+|+|+.
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCC
Confidence 1123345666777766655 999999853 2334556666666 57789999999986
No 133
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00036 Score=66.84 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=46.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe--CCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV--SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 423 (501)
.+++.|+|++|+|||+||.+++. . .-..+.| +++ ....+.. ..+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~--~---~G~~Vly--Is~~~eE~v~~~-----------------~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE--A---LGGKDKY--ATVRFGEPLSGY-----------------NTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH--H---HHTTSCC--EEEEBSCSSTTC-----------------BCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEE--EEecchhhhhhh-----------------hcCHHHHHHHHHH
Confidence 36789999999999999999987 3 1223567 776 2221100 1345566666666
Q ss_pred hcCCceEEEEEcCCCC
Q 010799 424 ILYEKRYLVVLDDVHS 439 (501)
Q Consensus 424 ~l~~~r~LlVlDnv~~ 439 (501)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 665555 999999876
No 134
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.14 E-value=0.00098 Score=68.26 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++|++.++..+++.|.... ..-+-++|.+|+|||+||+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 569999999999999997643 23457899999999999999875
No 135
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.12 E-value=0.0022 Score=59.79 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=28.9
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...-+..++....++...+.++|++|+|||.+|..+++
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34446666644324456899999999999999999887
No 136
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.11 E-value=0.0015 Score=64.26 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=37.0
Q ss_pred ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++.|.+.+.. .....+-|-++|.+|+|||+||+.+.+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999887731 1112345788999999999999999864
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.09 E-value=0.00036 Score=61.28 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=38.5
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
...++|++..+..+.+.+... ....+.|+|.+|+||||||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999764 3445689999999999999999853
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.06 E-value=0.00099 Score=65.01 Aligned_cols=47 Identities=19% Similarity=0.019 Sum_probs=39.0
Q ss_pred ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++|++..+..+..++... ......+-|+|.+|+|||+||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999988742 23455688999999999999999975
No 139
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.03 E-value=0.0014 Score=59.31 Aligned_cols=83 Identities=18% Similarity=0.002 Sum_probs=51.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCC-----------CCcCcc---h
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGS-----------KVEKQL---D 221 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~-----------~~~~~~---~ 221 (501)
-.++.|+|.+|+|||||+..+.. ..=...+|+.....++...+.. +.+.++.. ...... .
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999875 1224567888777666665543 33332221 111111 1
Q ss_pred HHHHHHHHccCCeEEEEEecCCC
Q 010799 222 PQKKLRKLFTENRYLVVIINART 244 (501)
Q Consensus 222 ~~~~l~~~l~~kr~LlVlDdv~~ 244 (501)
....++..++.+.-+||||.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 23445555554567999999754
No 140
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.02 E-value=0.0018 Score=63.39 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=60.7
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|...|. .+=..-+++.|+|++|+|||||+..++. .....-..++| ++.....+.. .+..+......
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~Vly--Id~E~s~~~~-----ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAF--IDAEHALDPV-----YAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EecccccchH-----HHHHcCCchhhhh
Confidence 34555553 2324457999999999999999999887 33332234567 7765554433 34444433211
Q ss_pred --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
...+.++....+...+. ...-++|+|.+..
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 34466677777666654 3455899998764
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.00039 Score=63.50 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=62.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHh
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGI 424 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~ 424 (501)
-.++.++|+.|+||||++..+++ +...+-..+.. +..... .. ....++..++..... ......++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli--~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLV--FKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEE--EEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEE--EEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 46899999999999999988877 44433323333 322211 11 112333333322111 112345566666666
Q ss_pred cCCce-EEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 425 LYEKR-YLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 425 l~~~r-~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
+.+.+ -+|++|.++.. .++-++...+.. .+..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~----~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE----NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH----TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh----CCCeEEEEecc
Confidence 55544 49999999753 222223333333 27889999984
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.98 E-value=0.0033 Score=63.76 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=31.1
Q ss_pred ecchhHHHHHHHhhcC---------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 327 SMENDILKLAKLTLNS---------SDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 327 GR~~~~~~l~~~L~~~---------~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
|.++-++.+.+.+... ......++|.|.+|+|||||...+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 5566666666665321 123468999999999999999998764
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.97 E-value=0.003 Score=62.99 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=37.9
Q ss_pred ccccccchhhHHHHHHHHhcC----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS----------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..+..|.+++... ....+-+-|+|.+|+|||+||+.+.+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999998887320 112457889999999999999999753
No 144
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.97 E-value=0.0033 Score=59.98 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=37.8
Q ss_pred ccccccchhhHHHHHHHHhcC----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS----------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..+..|.+++... ....+.+.|+|.+|+||||||+.+.+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999998877421 112457889999999999999999853
No 145
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.95 E-value=0.0011 Score=64.29 Aligned_cols=112 Identities=10% Similarity=0.073 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchH
Q 010799 143 NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDP 222 (501)
Q Consensus 143 ~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~ 222 (501)
..+..++.........+.|+|.+|+||||||+.+.+...-. .+ ..+++ +...+...+...+... .
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i------~~~~~~~~~~~~~~~~-------~ 88 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYS------SADDFAQAMVEHLKKG-------T 88 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEE------EHHHHHHHHHHHHHHT-------C
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEE------EHHHHHHHHHHHHHcC-------c
Confidence 34444444333245678899999999999999998632111 11 12333 3344454544444321 0
Q ss_pred HHHHHHHccCCeEEEEEecCCChh---H-HHHHhhcCCC-CCCCcEEEEEecc
Q 010799 223 QKKLRKLFTENRYLVVIINARTPD---I-WDILKYLFPN-SSNGSRVILSFQE 270 (501)
Q Consensus 223 ~~~l~~~l~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtr~ 270 (501)
...+...+. +.-+|+|||+.... . .+.+...+.. ...|..||+||.+
T Consensus 89 ~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 89 INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 222333333 35689999985422 1 2233322211 1245678888753
No 146
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.94 E-value=0.0034 Score=59.92 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=53.7
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----CCCCHHHH-HHH
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD----EESSLDDL-ESE 420 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~~ 420 (501)
++.|+|++|+|||||+.+++. ..... -..++| ++..+..+.. .++.++.+... ...+.+++ ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vly--Id~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLF--YDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEE--EESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEE--EeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 789999999999999999876 33332 234677 7776655543 25555544321 34455665 444
Q ss_pred HHHh--cC-CceEEEEEcCCCC
Q 010799 421 FTGI--LY-EKRYLVVLDDVHS 439 (501)
Q Consensus 421 l~~~--l~-~~r~LlVlDnv~~ 439 (501)
+... +. .+.-|||+|.+..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHHhhccCceEEEEecccc
Confidence 4333 33 4678999999875
No 147
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.92 E-value=0.0012 Score=63.56 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=36.5
Q ss_pred cccccchhhHHHHHHHHhcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRS-------HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++|.+..++.+...+... ......+.++|.+|+||||+|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 35789999888888877642 11245789999999999999999985
No 148
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.91 E-value=0.0011 Score=62.18 Aligned_cols=47 Identities=4% Similarity=-0.099 Sum_probs=33.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++|....+.++.+.+..-......+-|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45789999998888777642112245679999999999999999864
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.91 E-value=0.00087 Score=73.80 Aligned_cols=204 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHHhhhh----cccccccccceeEEEEcCCCC-------------------CHHHHHHHHHHHhcCC
Q 010799 158 TISVVDVAGSVMTTDLWKSY----ECETVKEYFQCRAWVPVPEEL-------------------ERRELVTDILKQVGGS 214 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~----~~~~v~~~F~~~~wv~vs~~~-------------------~~~~l~~~i~~~~~~~ 214 (501)
+++|+|..|+|||||.+.+. +......... .+.+.+.+ . .+-..++++.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~---~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR---TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT 538 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSC---EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcccccee---EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC
Q ss_pred ---------CCcCcchHHHHHHHHccCCeEEEEEecCCC---hhHHHHHhhcCCCCCCCcEEEEEeccccchh--cccCC
Q 010799 215 ---------KVEKQLDPQKKLRKLFTENRYLVVIINART---PDIWDILKYLFPNSSNGSRVILSFQEADAAR--CRNMS 280 (501)
Q Consensus 215 ---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~ 280 (501)
.-..-+.-.-.|...|-.+.-+|+||...+ ...-..+...+.. .|..||++|.+.+.+. |..+-
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii 616 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYII 616 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEE
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEE
Q ss_pred CCCCCccc----------CcceeeeccccCCCCCCCCCCCCCCCCccccccccceeecchhH-------HHHHHHhhcCC
Q 010799 281 FFGGESSF----------KPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDI-------LKLAKLTLNSS 343 (501)
Q Consensus 281 ~l~~~~~~----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~-------~~l~~~L~~~~ 343 (501)
.+.+.... ...........-.........|.+.............+-.++-- ..+.+-+.-.=
T Consensus 617 ~L~~G~iv~~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I 696 (986)
T 2iw3_A 617 NYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQC 696 (986)
T ss_dssp EEETTEEEEEESCHHHHHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEE
T ss_pred EEECCeeecCCCCHHHHHhhhHHHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEE
Q ss_pred CCceEEEEEecCCCChHHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIY 367 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~ 367 (501)
..-.+++|.|+.|+|||||.+.++
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLa 720 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLT 720 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0039 Score=59.85 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=67.9
Q ss_pred cchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccc-ccc-cccceeEEEEcCC-CCCHHHHHHHHHHHhcC
Q 010799 137 DLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECE-TVK-EYFQCRAWVPVPE-ELERRELVTDILKQVGG 213 (501)
Q Consensus 137 g~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~-~v~-~~F~~~~wv~vs~-~~~~~~l~~~i~~~~~~ 213 (501)
|-++.++.|.+.+..+. .+..-++|.+|+||||+|+.+.+.. ... .+.+. .++..+. ...... .+++++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 33455666777776553 6788899999999999999987531 111 23333 3333322 233332 2334444432
Q ss_pred CCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799 214 SKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE 270 (501)
Q Consensus 214 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~ 270 (501)
... .+++-++|+|++.. ....+.|...+..-...+.+|++|.+
T Consensus 77 ~p~--------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 77 SPE--------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp CCS--------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred ccc--------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 211 24567889999863 55567777666555567788877754
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.89 E-value=0.00085 Score=61.38 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=60.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----------------
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---------------- 409 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 409 (501)
-.+++|.|++|+|||||++.++. .....-..+.| +... .....+...+. .+......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~--~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIY--VTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEE--EESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 36999999999999999999886 22222223455 4432 23333333322 22211100
Q ss_pred ------CCCCHHHHHHHHHHhcCC-ce--EEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799 410 ------EESSLDDLESEFTGILYE-KR--YLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA 468 (501)
Q Consensus 410 ------~~~~~~~~~~~l~~~l~~-~r--~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~ 468 (501)
...+..++...+...+.. ++ .+||+|+... ......+...+.......+..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011445555555554432 33 4999999763 22233333333220012478899998876
No 152
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.87 E-value=0.0032 Score=61.98 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC---
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV--- 408 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~--- 408 (501)
..|..+|. .+=...+++.|+|++|+|||+||..++. .....-..++| ++.....+.. .+..++.+..
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vly--i~~E~s~~~~-----~a~~~g~d~~~l~ 130 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAF--IDAEHALDPV-----YARALGVNTDELL 130 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEE--EECCCChhHH-----HHHHcCCCHHHce
Confidence 34444453 2223446999999999999999999877 33322345778 7776554432 1333333211
Q ss_pred -CCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC
Q 010799 409 -DEESSLDDLESEFTGILYEK-RYLVVLDDVHS 439 (501)
Q Consensus 409 -~~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~ 439 (501)
....+.+++...+...+... .-+||+|.+..
T Consensus 131 i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 131 VSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred eecCCcHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 12346677777777766543 45899999754
No 153
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.87 E-value=0.0029 Score=62.02 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=59.3
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|..+|. .+=..-+++.|+|++|+||||||..++. .....-..++| ++.....+.. .+..++.....
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vly--i~~E~~~~~~-----~a~~lG~~~~~l~ 117 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAF--IDAEHALDPE-----YAKKLGVDTDSLL 117 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCCCcCHH-----HHHHcCCCHHHeE
Confidence 34444553 2323447999999999999999999886 33322245677 7776544432 23334322111
Q ss_pred --CCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
...+.++....+...... +.-+||+|.+..
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 118 VSQPDTGEQALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred EecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence 234566666666666544 456999999754
No 154
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.87 E-value=0.0015 Score=67.79 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=39.7
Q ss_pred ccccccchhhHHHHHHHHhcCC---------------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSH---------------SSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~---------------~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|++..+++|.++|.... +..+.+-|+|.+|+||||||+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999997410 13468899999999999999999854
No 155
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.84 E-value=0.0028 Score=57.83 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.-.+++|.|++|+|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 156
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.83 E-value=0.0018 Score=56.42 Aligned_cols=56 Identities=13% Similarity=-0.033 Sum_probs=35.6
Q ss_pred HHHHHHhcCCceEEEEEcCCCCh---h----------------hHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 418 ESEFTGILYEKRYLVVLDDVHSP---G----------------AWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~~---~----------------~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
.-.+.+.+..++-+|+||.-... . ....+...+... ...|..+|++|.+...+..+
T Consensus 91 rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l-~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 91 LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGL-QREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTH-HHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhH-HhcCCcEEEEeCCHHHhhhh
Confidence 34566667788899999986441 1 224445555441 23477899999987766543
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0043 Score=60.59 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=36.3
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|.+..++.|...+..+. .+.+.++|.+|+||||+|+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3568898888888888887653 33388999999999999999875
No 158
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.80 E-value=0.0018 Score=62.29 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=36.7
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|....+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999988888652222345679999999999999999864
No 159
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.74 E-value=0.0029 Score=64.98 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=37.1
Q ss_pred cccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+++|.+..+.+|.+++... -....-+-|+|.+|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999988877531 123456789999999999999999853
No 160
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.73 E-value=0.0064 Score=59.42 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
..|..+|..+=..-.++.|+|++|+|||+||..++....... .-..++| ++....++...+. .++..+.....
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vly--i~~E~~~~~~~l~-~~~~~~g~~~~ 185 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIF--IDTENTFRPDRLR-DIADRFNVDHD 185 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEE--EESSSCCCHHHHH-HHHHHTTCCHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEE--EECCCCCCHHHHH-HHHHHcCCCHH
Confidence 344445533334557999999999999999999877321211 1235677 7776655555443 33333332210
Q ss_pred --------CCCCCHH---HHHHHHHHhcC---CceEEEEEcCCCC
Q 010799 409 --------DEESSLD---DLESEFTGILY---EKRYLVVLDDVHS 439 (501)
Q Consensus 409 --------~~~~~~~---~~~~~l~~~l~---~~r~LlVlDnv~~ 439 (501)
....+.+ ++...+...+. .+.-+||+|.+..
T Consensus 186 ~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 186 AVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 0111222 33344445443 4567999999865
No 161
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.70 E-value=0.0028 Score=62.17 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|..+|. .+=...+++.|+|.+|+||||||..++. .....-..++| ++.....+.. .+..+......
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vly--id~E~s~~~~-----~a~~~g~~~~~l~ 119 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI-----YARKLGVDIDNLL 119 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EeCCCCccHH-----HHHHcCCChhhee
Confidence 34444453 2223447999999999999999999887 33322235677 7776555432 13333332110
Q ss_pred --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
...+.+++...+..... ...-+||+|.+..
T Consensus 120 i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 120 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEEECGGG
T ss_pred eeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHH
Confidence 22345556555555443 3445899999753
No 162
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.69 E-value=0.0012 Score=70.98 Aligned_cols=204 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHH---------------------hhhhcccccc---------------------------------
Q 010799 158 TISVVDVAGSVMTTDL---------------------WKSYECETVK--------------------------------- 183 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa---------------------~~v~~~~~v~--------------------------------- 183 (501)
+++|+|..|+|||||+ +.+..-..-.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~ 125 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIY 125 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC
T ss_pred EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechh
Q ss_pred -------------------------cccceeEEEEcCCCCCHHHHHHHH-----------HHHhcCCCCcCcch------
Q 010799 184 -------------------------EYFQCRAWVPVPEELERRELVTDI-----------LKQVGGSKVEKQLD------ 221 (501)
Q Consensus 184 -------------------------~~F~~~~wv~vs~~~~~~~l~~~i-----------~~~~~~~~~~~~~~------ 221 (501)
.-++...|..-........-.... +..++.........
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSG 205 (670)
T 3ux8_A 126 DYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSG 205 (670)
T ss_dssp -------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCH
T ss_pred hhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCH
Q ss_pred ---HHHHHHHHccCCeE--EEEEecCCC------hhHHHHHhhcCCCCCCCcEEEEEeccccchh-cccCCCCCCCcccC
Q 010799 222 ---PQKKLRKLFTENRY--LVVIINART------PDIWDILKYLFPNSSNGSRVILSFQEADAAR-CRNMSFFGGESSFK 289 (501)
Q Consensus 222 ---~~~~l~~~l~~kr~--LlVlDdv~~------~~~~~~l~~~~~~~~~gs~iivTtr~~~va~-~~~~~~l~~~~~~~ 289 (501)
-.-.|...|-.+.- +|+||...+ ......+...+... |..||++|.+.+++. |..+-.+.......
T Consensus 206 Ge~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~ 283 (670)
T 3ux8_A 206 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDTMLAADYLIDIGPGAGIH 283 (670)
T ss_dssp HHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHHHHHCSEEEEECSSSGGG
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhhCCEEEEeccccccc
Q ss_pred cceeeeccccCCCCCCCCC--------CCCCCCCccccccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHH
Q 010799 290 PKYIAYAASEDDGGNDDRA--------LPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTA 361 (501)
Q Consensus 290 ~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~ 361 (501)
.-.+............+.. .................+.-...-....+-+.-.=..-.+++|.|+.|+||||
T Consensus 284 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKST 363 (670)
T 3ux8_A 284 GGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKST 363 (670)
T ss_dssp CCSEEEEECHHHHHTCTTCHHHHHHTTSSCCCCCSSCCCCCSCEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHH
T ss_pred CCEEEEecCHHHHhcCchhHHHHHhccccccccccccccccccceeecCccccccccceeEecCCCEEEEEeeCCCCHHH
Q ss_pred HH
Q 010799 362 LV 363 (501)
Q Consensus 362 LA 363 (501)
|+
T Consensus 364 Ll 365 (670)
T 3ux8_A 364 LV 365 (670)
T ss_dssp HH
T ss_pred HH
No 163
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.62 E-value=0.00064 Score=65.16 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=42.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc--CCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV--PEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN 233 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v--s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k 233 (501)
-+++-|+|++|+||||||.++... .-....|++. ++..+. .. .........+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~~-~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------YN-TDFNVFVDDIARAMLQH 183 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------CB-CCHHHHHHHHHHHHHHC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------hh-cCHHHHHHHHHHHHhhC
Confidence 356789999999999999998753 1123356666 332111 00 11122344556666555
Q ss_pred eEEEEEecCCC
Q 010799 234 RYLVVIINART 244 (501)
Q Consensus 234 r~LlVlDdv~~ 244 (501)
+ +||+|++..
T Consensus 184 ~-LLVIDsI~a 193 (331)
T 2vhj_A 184 R-VIVIDSLKN 193 (331)
T ss_dssp S-EEEEECCTT
T ss_pred C-EEEEecccc
Confidence 6 999999864
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.61 E-value=0.0071 Score=58.62 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
..|..+|..+=..-.++.|+|++|+|||+||..++........ -..++| ++....++...+. +++..++....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vly--i~~e~~~~~~~l~-~~~~~~g~~~~ 170 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVY--IDTEGTFRWERIE-NMAKALGLDID 170 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEE--EESSSCCCHHHHH-HHHHHTTCCHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEE--EECCCCCCHHHHH-HHHHHhCCCHH
Confidence 3444444322234469999999999999999998863211111 235677 7776655555443 33444433210
Q ss_pred --------CCCCCHH---HHHHHHHHhcC--CceEEEEEcCCCC
Q 010799 409 --------DEESSLD---DLESEFTGILY--EKRYLVVLDDVHS 439 (501)
Q Consensus 409 --------~~~~~~~---~~~~~l~~~l~--~~r~LlVlDnv~~ 439 (501)
....+.+ ++...+...+. .+.-+||+|.+..
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 171 NVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 0122333 34455555554 4567999999875
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.60 E-value=0.0057 Score=52.90 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=55.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------------CcchHHH
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE------------KQLDPQK 224 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------------~~~~~~~ 224 (501)
.+|.|.|++|+||||+|+.+ ... .|. ++. ..++++.....-+..... .......
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~----g~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER----GAK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT----TCE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC----CCc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence 47899999999999999998 321 122 222 234444433332200000 0111234
Q ss_pred HHHHHc-cCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 225 KLRKLF-TENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 225 ~l~~~l-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
.+.+.+ ......+|+|++.+...++.+...+. ....+|....+.+++.
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~ 116 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKIRY 116 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHHHH
Confidence 455555 23344578899977666666655443 2345666666666653
No 166
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.60 E-value=0.013 Score=56.99 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc--------------------cccceeEEEEcC---
Q 010799 139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK--------------------EYFQCRAWVPVP--- 195 (501)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~--------------------~~F~~~~wv~vs--- 195 (501)
+.....|.+.+..+. -.+.+-++|..|+||||+|+.+.+.-.-. .|+|.. ++...
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~-~~~~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLAPEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE-EECCCTTC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EEeccccC
Confidence 344556666665442 24568899999999999998886421110 112222 22111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799 196 EELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA 271 (501)
Q Consensus 196 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~ 271 (501)
....... .+++.+.+.... ..+++-++|+|++.. .+..+.|...+.....++.+|++|.+.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~--------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA--------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC--------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHH-HHHHHHHHhhcc--------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1111111 122222222110 125677889999864 445566666665545577777777654
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.59 E-value=0.0015 Score=55.66 Aligned_cols=25 Identities=16% Similarity=-0.181 Sum_probs=21.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhccc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECE 180 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~ 180 (501)
-..+.|+|..|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998643
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0034 Score=57.76 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC-
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV- 408 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~- 408 (501)
.|..+|..+=..-.++.|.|++|+|||||+..++....... .-..++| ++.........+ ..++..+.....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~--i~~~~~~~~~~~-~~~~~~~g~~~~~ 88 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMY--IDTEGTFRPERL-LAVAERYGLSGSD 88 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEE--EESSSCCCHHHH-HHHHHHTTCCHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEE--EECCCCcCHHHH-HHHHHHcCCCHHH
Confidence 44444433223446999999999999999999877211111 1245677 766554333333 233333332210
Q ss_pred -------CCCCCHHH---HHHHHHHhcC-CceEEEEEcCCCC
Q 010799 409 -------DEESSLDD---LESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 409 -------~~~~~~~~---~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
....+..+ ....+.+.+. .+.-+||+|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 89 VLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 01122333 2333445543 4677999999864
No 169
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.53 E-value=0.00087 Score=64.62 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcCCC-CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 141 EVNKLADFLIRSHS-SLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 141 ~~~~l~~~L~~~~~-~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
....+.+++..... ....+-++|.+|+|||+||+.+++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44455566654322 2467889999999999999999863
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.49 E-value=0.0049 Score=62.82 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=34.6
Q ss_pred ccccccchhhHHHHHHHHhc---C-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---S-------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..++++.+++.. . -.-.+-+.++|.+|+||||||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789998887777665431 1 011233779999999999999999863
No 171
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.46 E-value=0.0069 Score=60.34 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV 408 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~ 408 (501)
..|..+|..+=..-.++.|.|++|+|||||+..++....... .-..++| ++.........+ ..++..+.....
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viy--id~E~~~~~~rl-~~~a~~~gl~~~ 241 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY--IDTEGTFRPVRL-VSIAQRFGLDPD 241 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEE--EESSSCCCHHHH-HHHHHHTTCCHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEE--EeCCCccCHHHH-HHHHHHcCCChH
Confidence 344445533323446999999999999999997753212211 1234677 766554443332 334444433211
Q ss_pred --------CCCCCHHH---HHHHHHHhcC-CceEEEEEcCCCC
Q 010799 409 --------DEESSLDD---LESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 409 --------~~~~~~~~---~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
....+... ....+...+. .+.-+||+|.+..
T Consensus 242 ~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 DALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 01222222 2333333332 3577999999653
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.40 E-value=0.0052 Score=60.24 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ceeEEEEeCCCCChHHHHHHHHHHhccCCC--------CCC
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RAWANVYVSQDFDMRSVFADILRQLTQDEV--------DEE 411 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~--------~~~ 411 (501)
..-.++.|+|++|+|||||+..++......... .+ ++| ++....+.... +..++..+..... ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~--i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW--IDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEE--EESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEE--EeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEec
Confidence 344799999999999999999988732112111 23 477 76644432222 2233332221100 001
Q ss_pred CC---HHHHHHHHHHhcC------CceEEEEEcCCCChhh---------------HHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 412 SS---LDDLESEFTGILY------EKRYLVVLDDVHSPGA---------------WYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 412 ~~---~~~~~~~l~~~l~------~~r~LlVlDnv~~~~~---------------~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
.+ ...+...+...+. .+.-+||+|.+-..-+ ...+...|.......++.||+|+..
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 11 2234445555553 3678999999876311 2233332222101247889998765
Q ss_pred h
Q 010799 468 A 468 (501)
Q Consensus 468 ~ 468 (501)
.
T Consensus 286 ~ 286 (349)
T 1pzn_A 286 Q 286 (349)
T ss_dssp C
T ss_pred c
Confidence 4
No 173
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.33 E-value=0.0037 Score=59.69 Aligned_cols=25 Identities=4% Similarity=-0.073 Sum_probs=21.3
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+.+.++|++|+|||+||+.+.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457788999999999999999854
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.0017 Score=63.71 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=64.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
.+++|.|+.|+||||+.+.+.. .........+. .+..+..... ... ..+..... ...........+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~---t~ed~~e~~~--~~~-~~~v~q~~-~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL---TIEDPIEFVH--ESK-KCLVNQRE-VHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE---EEESSCCSCC--CCS-SSEEEEEE-BTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE---EccCcHHhhh--hcc-ccceeeee-eccccCCHHHHHHHHhh
Confidence 5999999999999999998876 22222122222 1111111000 000 00000000 01111234558888888
Q ss_pred CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799 427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
..+=+|++|+..+.+.+..+..... .|..||+|+........+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~~-----~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAAE-----TGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHHH-----TTCEEEEEESCSSHHHHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHHh-----cCCEEEEEEccChHHHHH
Confidence 8888999999998766665555422 367799999887765443
No 175
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.30 E-value=0.012 Score=56.90 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=59.0
Q ss_pred HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc---------CC-----ccceeEEEEeCCCCChHHHHHHH
Q 010799 334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK---------NF-----PCRAWANVYVSQDFDMRSVFADI 399 (501)
Q Consensus 334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~---------~f-----~~~~w~~v~~~~~~~~~~~~~~i 399 (501)
.|..+|..+=..-.++.|+|++|+|||+||..++....... .. ..++| ++....++...+. +.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~y--i~~e~~~~~~~l~-~~ 162 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVY--IDTEGTFRPERIM-QM 162 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEE--EESSSCCCHHHHH-HH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEE--EECCCCCCHHHHH-HH
Confidence 34444432223447999999999999999999876321111 11 35677 7776655555544 33
Q ss_pred HHHhccCCC--------CCCCCHH---HHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799 400 LRQLTQDEV--------DEESSLD---DLESEFTGILYE--KRYLVVLDDVHS 439 (501)
Q Consensus 400 ~~~l~~~~~--------~~~~~~~---~~~~~l~~~l~~--~r~LlVlDnv~~ 439 (501)
+..+..... ....+.+ ++...+...+.. +.-+||+|.+..
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 444433210 0122333 244455555543 456999999864
No 176
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0035 Score=61.81 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=36.7
Q ss_pred cceeecchhHHHHHHHhh-------------cCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTL-------------NSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~-------------~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++|.+..++.+...+. ......+.+.|+|++|+|||++|+.++.
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 347999999999988772 1112346799999999999999999988
No 177
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0043 Score=55.92 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.+++|.+.+........+++|.|++|+|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666644334557999999999999999998876
No 178
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.11 E-value=0.033 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=20.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.04 E-value=0.0066 Score=54.36 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=32.6
Q ss_pred cchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHc
Q 010799 328 MENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 328 R~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
|++.++.|.+.+... .....+++|.|++|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556778888777543 24457999999999999999998876
No 180
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.95 E-value=0.0038 Score=61.02 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.3
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
...+++|.+.....+...+.... ...+.|+|++|+|||++|+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 35679999886665544443222 234999999999999999999873
No 181
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.91 E-value=0.0013 Score=58.24 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++.++|+.|+||||++...+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999977665
No 182
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.90 E-value=0.05 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 183
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.87 E-value=0.035 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5999999999999999999875
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.87 E-value=0.0077 Score=54.83 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=20.0
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.++.|+|.+|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999998874
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.85 E-value=0.046 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 342 SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 342 ~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+..+|+|.|++|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567999999999999999998776
No 186
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.85 E-value=0.013 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|++|+|||||++.++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999999877
No 187
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.04 Score=51.49 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=64.0
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E-----------EE--EeCCCC----ChH--------------H
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A-----------NV--YVSQDF----DMR--------------S 394 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~-----------~v--~~~~~~----~~~--------------~ 394 (501)
.+++|.|+.|+|||||.+.++.- . . ..+.++ + .+ .+.+.+ ++. .
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl--~-p-~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~ 106 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL--L-P-YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD 106 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS--S-C-CEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCC--C-C-CCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence 58999999999999999998762 2 1 111111 0 01 111111 111 1
Q ss_pred HHHHHHHHhccC-CCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEe
Q 010799 395 VFADILRQLTQD-EVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILIT 465 (501)
Q Consensus 395 ~~~~i~~~l~~~-~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTt 465 (501)
...+++..+... ... ..+.-+...-.+...+..++-+++||+--+ ......+...+.. ... .||++|
T Consensus 107 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~--~~~--tviivt 182 (263)
T 2pjz_A 107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGK--EGILVT 182 (263)
T ss_dssp HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHH--SCS--EEEEEE
T ss_pred HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHH--hcC--cEEEEE
Confidence 123344444433 111 122233334445555556777999999764 2333444444444 222 799999
Q ss_pred CChHHHhhcC
Q 010799 466 REAYVARSFS 475 (501)
Q Consensus 466 R~~~~~~~~~ 475 (501)
.+......+.
T Consensus 183 Hd~~~~~~~~ 192 (263)
T 2pjz_A 183 HELDMLNLYK 192 (263)
T ss_dssp SCGGGGGGCT
T ss_pred cCHHHHHHhc
Confidence 9876655443
No 188
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.83 E-value=0.0027 Score=59.48 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC-CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD-FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
-.+++|+|+.|+|||||.+.+.. .....+.+.++ +.-... +-.... . .+...... ..+.......+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~--~~g~~i~~~~~~~-~----~~v~q~~~-gl~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHII--TIEDPIEYVFKHK-K----SIVNQREV-GEDTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEE--EEESSCCSCCCCS-S----SEEEEEEB-TTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEE--EcCCcceeecCCc-c----eeeeHHHh-CCCHHHHHHHHHHH
Confidence 36999999999999999998876 33222233333 211000 000000 0 00000000 00012234556666
Q ss_pred cCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799 425 LYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR 472 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~ 472 (501)
+...+-+|++|+..+.+....+.... ..|..||+||.......
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~-----~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA-----ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH-----HTTCEEEEEECCSSHHH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH-----ccCCEEEEEeCcchHHH
Confidence 65567789999997655444433332 23677899988765443
No 189
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.81 E-value=0.069 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=20.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|+|..|.|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999974
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.80 E-value=0.0048 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 191
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.79 E-value=0.042 Score=53.76 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 413 SLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.-+...-.+.+.|..++-+|++|+--+ ......+...+.......|..||++|.+-..+..++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 344555666777778888999999765 222223333332200134788999999987766543
No 192
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.78 E-value=0.074 Score=51.70 Aligned_cols=128 Identities=9% Similarity=-0.016 Sum_probs=81.5
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccc-cCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFT 422 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 422 (501)
.-.++..++|+.|.||++.+..+.. ... ..|..... +......++ .++.+.+.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~--~~~~~~~~~----------------------~~l~~~~~ 69 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHT--FSIDPNTDW----------------------NAIFSLCQ 69 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEE--EECCTTCCH----------------------HHHHHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEE--EEecCCCCH----------------------HHHHHHhc
Confidence 3457999999999999999988876 322 23322111 222222222 22332222
Q ss_pred Hh-cCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCC-------hHHHhhcCCCCcceeCCCCChHHH
Q 010799 423 GI-LYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITRE-------AYVARSFSPSIFLHQLRPLNEEES 491 (501)
Q Consensus 423 ~~-l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~-------~~~~~~~~~~~~~~~l~~L~~~ea 491 (501)
.. +.+.+-++|+|+++. ...++.|...+.. .++++.+|+++.. ..+...+.+...+++..+++.++.
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 11 234567888999865 4667888888887 6677877776643 345555554667899999999888
Q ss_pred HHHHHHhh
Q 010799 492 GKLFQRRL 499 (501)
Q Consensus 492 ~~Lf~~~~ 499 (501)
.+.+.+.+
T Consensus 148 ~~~l~~~~ 155 (343)
T 1jr3_D 148 PRWVAARA 155 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 193
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.78 E-value=0.096 Score=47.76 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhc-CCCCCCCCCEEEEEeCChHHHhhc
Q 010799 417 LESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIF-SPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 417 ~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l-~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
..-.+.+.+-.++-+++||+--+ ......+...+ .. ...+..||++|.+......+
T Consensus 137 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~--~~~~~tvi~vtH~~~~~~~~ 196 (229)
T 2pze_A 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK--LMANKTRILVTSKMEHLKKA 196 (229)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCC--CTTTSEEEEECCCHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHH--hhCCCEEEEEcCChHHHHhC
Confidence 33445555556677899999765 33344555543 34 33477899999987766543
No 194
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.77 E-value=0.064 Score=49.22 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcC---CCCCCCCCEEEEEeCChHHHhh
Q 010799 417 LESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFS---PQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 417 ~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~---~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
..-.+.+.+-.++-+++||+--. ......+...+. . ...+..||++|.+......
T Consensus 134 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~~~tviivtH~~~~~~~ 194 (237)
T 2cbz_A 134 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG--MLKNKTRILVTHSMSYLPQ 194 (237)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS--TTTTSEEEEECSCSTTGGG
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh--hcCCCEEEEEecChHHHHh
Confidence 33444555555677899999765 233345555553 3 2347889999988766543
No 195
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.75 E-value=0.022 Score=54.95 Aligned_cols=88 Identities=18% Similarity=0.081 Sum_probs=55.3
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhccccccc---------cc-----ceeEEEEcCCCCCHHHHHHHHHHHhcCCCC----
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKE---------YF-----QCRAWVPVPEELERRELVTDILKQVGGSKV---- 216 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~---- 216 (501)
.-.++-|.|.+|+||||||.++..+..... .. ...+|++....|+...+.+ +++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999988764322111 11 4678999988888877664 3455554321
Q ss_pred -------cCcc---hHHHHHHHHccC--CeEEEEEecCC
Q 010799 217 -------EKQL---DPQKKLRKLFTE--NRYLVVIINAR 243 (501)
Q Consensus 217 -------~~~~---~~~~~l~~~l~~--kr~LlVlDdv~ 243 (501)
.+.. ++...+...++. +--+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0101 123445555554 34588899874
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.75 E-value=0.019 Score=52.59 Aligned_cols=88 Identities=7% Similarity=-0.088 Sum_probs=52.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------cCcc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGGSKV-----------EKQL 220 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-----------~~~~ 220 (501)
-.++.|+|.+|+|||||+..+........ .-...+|+.....+....+. .+++.++.... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999998875322211 12467888877766665543 34444443210 0111
Q ss_pred h---HHHHHHHHcc-CCeEEEEEecCCC
Q 010799 221 D---PQKKLRKLFT-ENRYLVVIINART 244 (501)
Q Consensus 221 ~---~~~~l~~~l~-~kr~LlVlDdv~~ 244 (501)
+ ....+.+.+. .+--+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 1233555554 4567999999753
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.0059 Score=54.98 Aligned_cols=37 Identities=11% Similarity=-0.054 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555543333567999999999999999998874
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.73 E-value=0.032 Score=58.09 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=34.8
Q ss_pred cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|.++-...+.+.+.- ......++.++|.+|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578888887777655431 122456899999999999999999985
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.71 E-value=0.0089 Score=53.48 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 138 LNKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 138 ~~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+++.+++|.+.+... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667788777753 23567999999999999999998874
No 200
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.67 E-value=0.007 Score=62.12 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=36.5
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++|+++.++.+...+..+ ..+.|+|++|+|||+||+.+++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 45899999999988877543 4789999999999999999988
No 201
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.031 Score=50.21 Aligned_cols=107 Identities=10% Similarity=0.160 Sum_probs=56.2
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH----------HhccCCCCCCCCHHHH
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR----------QLTQDEVDEESSLDDL 417 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~----------~l~~~~~~~~~~~~~~ 417 (501)
+|.|.|+||+||+|+|..++.+ |. ... ++. -+++++.+. ...... ..-+.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~--ist------GdllR~~i~~~t~lg~~~~~~~~~G--~lvpd~iv 64 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVH--IST------GDILREAVQKGTPLGKKAKEYMERG--ELVPDDLI 64 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEE--EEH------HHHHHHHHHHTCHHHHHHHHHHHHT--CCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeE--EcH------HHHHHHHHHhcChhhhhHHHHHhcC--CcCCHHHH
Confidence 4778999999999999998872 21 122 332 223332211 111111 12234556
Q ss_pred HHHHHHhcCCceEEEEEcCCCC-hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799 418 ESEFTGILYEKRYLVVLDDVHS-PGAWYDLKRIFSPQASPIGSRVILITREAYVAR 472 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~-~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~ 472 (501)
...+.+.+..... +|||++-. ..+.+.|...+.........-|.+....+.+..
T Consensus 65 ~~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~ 119 (206)
T 3sr0_A 65 IALIEEVFPKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119 (206)
T ss_dssp HHHHHHHCCSSSC-EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH
T ss_pred HHHHHHhhccCCc-eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHH
Confidence 7788888876543 68899854 444444444333210122334444544444433
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.65 E-value=0.016 Score=68.30 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---
Q 010799 334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--- 409 (501)
Q Consensus 334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--- 409 (501)
.|..+|. .+=.+.+.+.|+|++|+|||+||.+++. .....=..+.| +++.+..+... +..++.+...
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~F--i~~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEE--ECTTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EEcccccCHHH-----HHHcCCCchhcee
Confidence 3555553 2224557999999999999999999887 33333234556 66655544433 3344322111
Q ss_pred -CCCCHHHHHHHHHHhcC-CceEEEEEcCCC
Q 010799 410 -EESSLDDLESEFTGILY-EKRYLVVLDDVH 438 (501)
Q Consensus 410 -~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~ 438 (501)
+..+.++....++...+ .+..+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 23345566666666654 356799999985
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.65 E-value=0.053 Score=52.82 Aligned_cols=88 Identities=8% Similarity=-0.090 Sum_probs=54.9
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------cCc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGGSKV-----------EKQ 219 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-----------~~~ 219 (501)
.-.++.|.|.+|+||||||..+........ .=...+|++....|+...+.. ++..++.+.. .+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457889999999999999988875322211 124678999888888776654 3455543321 011
Q ss_pred c---hHHHHHHHHcc---CCeEEEEEecCC
Q 010799 220 L---DPQKKLRKLFT---ENRYLVVIINAR 243 (501)
Q Consensus 220 ~---~~~~~l~~~l~---~kr~LlVlDdv~ 243 (501)
. ++...+...++ .+--+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1 22334445554 455689999875
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.038 Score=55.48 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=35.6
Q ss_pred cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5678888888887776542 1123456778999999999999999863
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.56 E-value=0.0076 Score=58.67 Aligned_cols=48 Identities=15% Similarity=-0.063 Sum_probs=36.4
Q ss_pred ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-..++|.+..++.+...+... ......+.++|.+|+||||||+.+.+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889887777776666532 223467899999999999999999853
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.52 E-value=0.053 Score=52.15 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799 333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV 386 (501)
Q Consensus 333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~ 386 (501)
..|.+.+ .+=..-.++.|.|.+|+|||++|..++.+..... ..++| ++.
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~--~sl 104 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNL--HSL 104 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEE--EES
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEE--EEC
Confidence 3344444 3223446999999999999999999876322211 45666 664
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.014 Score=57.72 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- +-...+=+-++|++|+|||.||+.+.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 6788999888887765541 1123455678999999999999999853
No 208
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.52 E-value=0.074 Score=52.75 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++|....+.++.+.+..-......|.|+|.+|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHH
Confidence 477777888888777644233334569999999999999998765
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.51 E-value=0.0058 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
|.|+|+||+|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999876
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.51 E-value=0.0089 Score=55.64 Aligned_cols=48 Identities=8% Similarity=-0.046 Sum_probs=34.5
Q ss_pred ccccccchhhHHHHHHHHh---cC-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLI---RS-------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.+++|.+..++++.+++. .. ....+-+.|+|.+|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678999888877665543 11 011234789999999999999999863
No 211
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.49 E-value=0.072 Score=51.84 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
-+...-.+.+.|-.++-+|+||+--+. ..+..++..+.. ..|..+|++|.+...+..+.
T Consensus 131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~---~~g~tii~vTHd~~~~~~~a 195 (348)
T 3d31_A 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK---KNKLTVLHITHDQTEARIMA 195 (348)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH---HTTCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhC
Confidence 344455666777777889999996541 112222222221 23678999999977665543
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.48 E-value=0.036 Score=55.63 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988775
No 213
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.47 E-value=0.077 Score=51.77 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=50.8
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR 227 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~ 227 (501)
.-.++.|.|.+|+|||||+..+...... .=..++|+.....++.. .+++++..... +..+....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999988743221 11245788887777754 45555543221 1122334444
Q ss_pred HHcc-CCeEEEEEecCC
Q 010799 228 KLFT-ENRYLVVIINAR 243 (501)
Q Consensus 228 ~~l~-~kr~LlVlDdv~ 243 (501)
..++ .+--++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4443 344588999874
No 214
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.46 E-value=0.025 Score=54.66 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=55.1
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------Ccc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELVTDILKQVGGSKVE-----------KQL 220 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~~~ 220 (501)
-.++.|+|.+|+||||||.++......... =...+|++....++...+.. +++.++.+... ...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468899999999999999888743221111 23678999888888777654 44555443210 001
Q ss_pred ---hHHHHHHHHcc--CCeEEEEEecCCC
Q 010799 221 ---DPQKKLRKLFT--ENRYLVVIINART 244 (501)
Q Consensus 221 ---~~~~~l~~~l~--~kr~LlVlDdv~~ 244 (501)
++...+...++ .+--+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 12345555554 3556888998753
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.45 E-value=0.0071 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 216
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.44 E-value=0.0084 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 217
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.41 E-value=0.012 Score=53.75 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=36.3
Q ss_pred cccccc---hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc
Q 010799 133 TGILDL---NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV 194 (501)
Q Consensus 133 ~~~vg~---~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v 194 (501)
.+++|. +...+.+..++... ....+.|+|.+|+||||||+.+.+... .......|+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~ 88 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPL 88 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEH
Confidence 456763 24445555555433 456788999999999999999985322 22223455554
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.38 E-value=0.011 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++|.|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.36 E-value=0.049 Score=52.74 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=60.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL 236 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 236 (501)
.+++|+|..|.|||||++.+..-.. .-...+.+.-......... . +.+..-. .........|...|..+.-+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-ggg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF-GGNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC-BTTBCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe-CCChhHHHHHHHHhhhCCCE
Confidence 4789999999999999999874321 1123333332211110000 0 0000000 01122355677777777778
Q ss_pred EEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 237 VVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 237 lVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
|+||++.+.+.++.+... ..+ +.-+|+||...++..
T Consensus 244 lildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 244 IILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAGSSEE 279 (330)
T ss_dssp EEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECSSHHH
T ss_pred EEEcCCChHHHHHHHHHH-hcC--CCEEEEEEcccHHHH
Confidence 999999987767655443 221 223788888777544
No 220
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.35 E-value=0.07 Score=52.05 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=49.9
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR 227 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~ 227 (501)
.-.++.|.|.+|+||||||.++..... ..=...+|++....++.. .++.++..... +..+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999988864322 111356888888777653 24455533211 1112233444
Q ss_pred HHccC-CeEEEEEecCC
Q 010799 228 KLFTE-NRYLVVIINAR 243 (501)
Q Consensus 228 ~~l~~-kr~LlVlDdv~ 243 (501)
...+. +--+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 44433 34589999974
No 221
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.34 E-value=0.0085 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTI 366 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~ 366 (501)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.34 E-value=0.0068 Score=57.93 Aligned_cols=47 Identities=13% Similarity=-0.010 Sum_probs=36.6
Q ss_pred cccccchhhHHHHHHHHhc------------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR------------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~------------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++|.+..++.|...+.. .......+-++|.+|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999998887764 0112345779999999999999999853
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.34 E-value=0.03 Score=54.98 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=50.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-------cCcchHHHHHHH
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKV-------EKQLDPQKKLRK 228 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-------~~~~~~~~~l~~ 228 (501)
-.++-|.|.+|+||||||..+..... ..=..++|+.....++.. .++.++.+.. .+..+....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 45788899999999999988764322 112367899998877754 2445544321 111223445555
Q ss_pred HccCC-eEEEEEecCC
Q 010799 229 LFTEN-RYLVVIINAR 243 (501)
Q Consensus 229 ~l~~k-r~LlVlDdv~ 243 (501)
.++.. --+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 55433 3489999973
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.31 E-value=0.19 Score=48.54 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+++|.|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999988876
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.31 E-value=0.0036 Score=61.45 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=65.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHH--HHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERR--ELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN 233 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k 233 (501)
-.+++|+|..|.|||||.+.+..-.. .....++ +++.++.... .. ...+.+.. ...........|...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~--~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHI-LTIEDPIEFVHESK-KCLVNQRE--VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEE-EEEESSCCSCCCCS-SSEEEEEE--BTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEE-EEccCcHHhhhhcc-ccceeeee--eccccCCHHHHHHHHhhhC
Confidence 35899999999999999998864211 1111111 2222221110 00 00000000 0011223466888999888
Q ss_pred eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 234 RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 234 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
.=+|++|++.+.+.++.+.... ..|..||+||...+.+.
T Consensus 197 PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8899999999888777655442 34677999999988775
No 226
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.27 E-value=0.013 Score=54.11 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=29.2
Q ss_pred cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+.++.............|+|.|++|+||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 11 TIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445555444433334567899999999999999999876
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.27 E-value=0.028 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|+|++|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 347999999999999999998877
No 228
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.26 E-value=0.014 Score=52.03 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.9
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+..|..++.. -++...+.|+|++|+|||++|..+++
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 446666666643 34445899999999999999988887
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.23 E-value=0.0094 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 230
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.23 E-value=0.09 Score=51.32 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhcCCceEEEEEcCCCCh------hhH-HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 413 SLDDLESEFTGILYEKRYLVVLDDVHSP------GAW-YDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~-~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.-+...-.+.+.|-.++-+|+||+--+. ..+ ..+..... ..|..+|++|.+...+..++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~----~~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR----ANGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHHHC
Confidence 3344555666667777889999996541 112 22333222 24788999999987766554
No 231
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.22 E-value=0.066 Score=52.25 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
-+...-.+.+.|-.++-+|+||+--+. ..-..+...+.......|..+|++|.+...+..++
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 344455666667777889999996541 11122222222100023678999999987666544
No 232
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.20 E-value=0.015 Score=55.26 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=22.5
Q ss_pred CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 153 HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 153 ~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998864
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.19 E-value=0.01 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.011 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++++|.|++|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.17 E-value=0.077 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++++.|++|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988775
No 236
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.023 Score=57.16 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=35.6
Q ss_pred cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 5688999888888775431 1123556778999999999999999853
No 237
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.12 E-value=0.014 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 238
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.11 E-value=0.013 Score=52.23 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+++|.|++|+|||||++.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447999999999999999999887
No 239
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.11 E-value=0.044 Score=53.96 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=34.5
Q ss_pred cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++|....+.++...+..-......+.|+|.+|+||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 3588888888887776643223334678999999999999998765
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.09 E-value=0.016 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 241
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.07 E-value=0.0084 Score=56.15 Aligned_cols=48 Identities=6% Similarity=-0.117 Sum_probs=35.1
Q ss_pred ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..++.|.+.+.. .....+-+.++|.+|+|||+||+.+.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46799999888887776541 0011223678999999999999999864
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.05 E-value=0.0098 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.05 E-value=0.0085 Score=51.75 Aligned_cols=22 Identities=14% Similarity=-0.147 Sum_probs=19.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.04 E-value=0.062 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++++|++|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999988876
No 245
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.03 E-value=0.032 Score=55.04 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=58.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccce-eEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI 424 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 424 (501)
..+++|+|+.|+||||+++.+.. .+.....+.+ + +. .+.... ...-. .+-.... -..+.......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~--~e--~~~e~~--~~~~~-~~v~Q~~-~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIIT--IE--DPIEYV--FKHKK-SIVNQRE-VGEDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEE--EE--SSCCSC--CCCSS-SEEEEEE-BTTTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEE--ec--ccHhhh--hccCc-eEEEeee-cCCCHHHHHHHHHHH
Confidence 36899999999999999998876 3222212222 2 11 110000 00000 0000000 000111234567777
Q ss_pred cCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799 425 LYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA 471 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~ 471 (501)
+...+-+|++|++.+.+.+..+.... ..|..+|.|+......
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~-----~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA-----ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH-----TTTCEEEECCCCCSHH
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH-----hcCCEEEEEECcchHH
Confidence 77777789999998765554444332 2366788888765543
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.01 E-value=0.01 Score=52.31 Aligned_cols=23 Identities=13% Similarity=-0.188 Sum_probs=20.8
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999974
No 247
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.00 E-value=0.045 Score=56.11 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=36.1
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..++|.+..++.+...+..+ .-+-++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 46899999998888877754 35788999999999999999864
No 248
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.00 E-value=0.0018 Score=57.28 Aligned_cols=21 Identities=19% Similarity=-0.073 Sum_probs=17.4
Q ss_pred eEEEEEeeCChhhHHHHhhhh
Q 010799 157 FTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~ 177 (501)
.++.|+|..|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 477899999999999985554
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.064 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++.+|.++|++|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999888775
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.95 E-value=0.015 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.|++|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346999999999999999999887
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.93 E-value=0.12 Score=49.42 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=50.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccc--cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------Ccc-hH-HHHH
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEY--FQCRAWVPVPEELERRELVTDILKQVGGSKVE------KQL-DP-QKKL 226 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~--F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------~~~-~~-~~~l 226 (501)
.++-|.|.+|+|||||+.++.... ... =...+||.....++.. .+++++.+... ... +. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~--~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY--MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH--HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 378999999999999987776322 222 2357899888888764 36777765332 111 12 1222
Q ss_pred HHH--c-cCCeEEEEEecCCC
Q 010799 227 RKL--F-TENRYLVVIINART 244 (501)
Q Consensus 227 ~~~--l-~~kr~LlVlDdv~~ 244 (501)
... + +++--|||+|-|-.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 222 3 34567999999753
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.93 E-value=0.015 Score=57.24 Aligned_cols=46 Identities=13% Similarity=-0.062 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHh-------------cCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 134 GILDLNKEVNKLADFLI-------------RSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 134 ~~vg~~~~~~~l~~~L~-------------~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++|.+..++.+...+. ........+.++|.+|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899888888888773 11113456889999999999999999853
No 253
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.93 E-value=0.19 Score=47.57 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=34.5
Q ss_pred HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhc-CCCCCCCCCEEEEEeCChHHHhhc
Q 010799 418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIF-SPQASPIGSRVILITREAYVARSF 474 (501)
Q Consensus 418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l-~~~~~~~~~~iIiTtR~~~~~~~~ 474 (501)
.-.+.+.+..++-+++||+--. ......+...+ .. ...+..||++|.+......+
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~--~~~~~tviivtHd~~~~~~~ 225 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK--LMANKTRILVTSKMEHLKKA 225 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC--CTTTSEEEEECCCHHHHHHS
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH--hhCCCEEEEEecCHHHHHcC
Confidence 3344455556677899999765 33344555543 33 33478899999987766543
No 254
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.93 E-value=0.015 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..|+|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 255
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.92 E-value=0.034 Score=56.52 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=35.6
Q ss_pred ccccccchhhHHHHHHHH---hcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFL---IRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L---~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.++.++.+..++ .......+-+-++|++|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 368999998887655444 333223345788999999999999999864
No 256
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.90 E-value=0.085 Score=51.55 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 414 LDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
-+...-.+.+.|-.++-+|+||+--+. ..-..+...+.......|..+|++|.+...+..++
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a 201 (359)
T 2yyz_A 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA 201 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 344455566667777889999996541 11122222222100023678999999987665543
No 257
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.86 E-value=0.097 Score=51.42 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 413 SLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
.-+...-.+.+.|-.++-+|+||+--+ ...-..+...+.......|..+|++|.+...+..++
T Consensus 144 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 209 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 334445556666667778999999654 111122222222100023678999999987665543
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.84 E-value=0.014 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999877
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.83 E-value=0.047 Score=54.28 Aligned_cols=57 Identities=7% Similarity=-0.134 Sum_probs=37.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGG 213 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~ 213 (501)
-.++.|+|.+|+|||||+..+.-...... .-...+|+.....+....+. .+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 46899999999999999996642221111 22457888887777666543 35565554
No 260
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.82 E-value=0.077 Score=51.34 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=59.3
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY 426 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 426 (501)
..++|.|+.|+|||||++.+.. .+... .+.+. +.-......... ...+..- ....+.....+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~~~-~g~i~--i~~~~e~~~~~~----~~~i~~~----~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIPKE-ERIIS--IEDTEEIVFKHH----KNYTQLF----FGGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSCTT-SCEEE--EESSCCCCCSSC----SSEEEEE----CBTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCcCC-CcEEE--ECCeeccccccc----hhEEEEE----eCCChhHHHHHHHHhh
Confidence 4899999999999999999887 33222 33333 321111110000 0000000 0012334566777777
Q ss_pred CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799 427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473 (501)
Q Consensus 427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~ 473 (501)
.++-+|++|+..+.+.++.+ ..+.. + +..+|+||........
T Consensus 239 ~~p~ilildE~~~~e~~~~l-~~~~~---g-~~tvi~t~H~~~~~~~ 280 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFY-NVLCS---G-HKGTLTTLHAGSSEEA 280 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHH-HHHHT---T-CCCEEEEEECSSHHHH
T ss_pred hCCCEEEEcCCChHHHHHHH-HHHhc---C-CCEEEEEEcccHHHHH
Confidence 78889999999875544433 33323 1 3346777776554433
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.81 E-value=0.015 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 262
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.81 E-value=0.018 Score=53.37 Aligned_cols=47 Identities=9% Similarity=-0.069 Sum_probs=33.1
Q ss_pred ccccccchhhHHHHHHHHhc--C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR--S---------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+.++.++... . ..... +.|+|.+|+|||||++.+.+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 35788988776666554431 1 11123 889999999999999999864
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.81 E-value=0.063 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5999999999999999999875
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.80 E-value=0.045 Score=51.11 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=58.9
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE-cCCCCCHHHHHHHHHH--HhcCCCCcCcchHHHHHHHHcc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP-VPEELERRELVTDILK--QVGGSKVEKQLDPQKKLRKLFT 231 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~-vs~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~l~~~l~ 231 (501)
.-.+++|+|..|+|||||.+.+..-.. ..+...+++. ..-.+-.... ..++. .++. ........+...|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHHHHHHHHHHHHh
Confidence 346899999999999999998864211 1112233221 1000000000 00000 0000 11234556666665
Q ss_pred CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 232 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
.+.=+|+||+..+.+....+.... ..|.-|++||.+.+++.
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 566688899998655544333222 34777999999887654
No 265
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.80 E-value=0.017 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=35.4
Q ss_pred cceeecchhHHHHHHHhhcC------------CCCceEEEEEecCCCChHHHHHHHHc
Q 010799 323 TAVVSMENDILKLAKLTLNS------------SDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 323 ~~fvGR~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.++..+.|...+... ....+.+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46799888888886665321 11346799999999999999999987
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.79 E-value=0.13 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+++|.+|+||||++..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988776
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.79 E-value=0.033 Score=54.49 Aligned_cols=82 Identities=10% Similarity=-0.028 Sum_probs=49.3
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR 227 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~ 227 (501)
.-.++.|.|.+|+||||||.++..... ..=...+|+.....++... +..++..... ...+....++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346889999999999999988764322 1113578999888777542 4445433211 1112233343
Q ss_pred HHcc-CCeEEEEEecCC
Q 010799 228 KLFT-ENRYLVVIINAR 243 (501)
Q Consensus 228 ~~l~-~kr~LlVlDdv~ 243 (501)
...+ .+--+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 3332 334489999963
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.78 E-value=0.017 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.|++|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999877
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.78 E-value=0.023 Score=54.70 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=29.8
Q ss_pred eecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHc
Q 010799 326 VSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 326 vGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+|-...+..+...+... ...+.+++|.|++|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444455444444332 34556999999999999999998866
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=0.011 Score=52.63 Aligned_cols=23 Identities=17% Similarity=-0.068 Sum_probs=20.8
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.76 E-value=0.014 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 272
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.76 E-value=0.018 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.74 E-value=0.014 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.72 E-value=0.019 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 275
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.71 E-value=0.021 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+..+|+|.|++|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999887
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.012 Score=51.60 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=20.3
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999874
No 277
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.70 E-value=0.019 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+..+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999999877
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.68 E-value=0.019 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.67 E-value=0.012 Score=51.17 Aligned_cols=22 Identities=5% Similarity=-0.253 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.67 E-value=0.015 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++++|.|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.67 E-value=0.021 Score=53.86 Aligned_cols=47 Identities=11% Similarity=-0.080 Sum_probs=32.6
Q ss_pred ccccccchhhHHHHHHHHhc---C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR---S---------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~---~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
-.++.|.++.+++|.+.+.. . ..... +.++|.+|+||||||+.+.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 35678888888877765421 0 11223 899999999999999999863
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.66 E-value=0.11 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 6999999999999999999875
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.66 E-value=0.02 Score=51.32 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999877
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.64 E-value=0.02 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.64 E-value=0.015 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.0
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997653
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.64 E-value=0.022 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999887
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.63 E-value=0.025 Score=54.94 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=31.6
Q ss_pred ccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 136 LDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 136 vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
|+.+.-.+++++.|... ......|.++|++|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 45556667777776532 23566789999999999999998874
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.61 E-value=0.02 Score=51.02 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|++|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 289
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.61 E-value=0.024 Score=50.75 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+|+|.|++|+||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447999999999999999999877
No 290
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.60 E-value=0.091 Score=53.13 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEe
Q 010799 335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYV 386 (501)
Q Consensus 335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~ 386 (501)
|...+ .+=..-.++.|.|.+|+|||++|..++.+ .... -..++| ++.
T Consensus 190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~--~sl 237 (444)
T 2q6t_A 190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGI--YSL 237 (444)
T ss_dssp HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEE--EES
T ss_pred hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEE--EEC
Confidence 44444 33334469999999999999999998873 3221 234566 554
No 291
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.60 E-value=0.039 Score=53.32 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=35.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++|.+..+..+...+... .-+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 56899999998888888764 2477899999999999999985
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.57 E-value=0.017 Score=50.08 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|+|+|++|+|||||++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.56 E-value=0.019 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999877
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.55 E-value=0.011 Score=51.19 Aligned_cols=22 Identities=18% Similarity=-0.037 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.54 E-value=0.015 Score=50.55 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=20.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999974
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.53 E-value=0.11 Score=50.42 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=57.5
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh-------
Q 010799 331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL------- 403 (501)
Q Consensus 331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l------- 403 (501)
-+..|.+.+. +=..-.++.|.|.+|+|||++|..++.+ ....=..++| ++. ..+...+...++...
T Consensus 32 G~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~--fSl--Ems~~ql~~Rlls~~~~v~~~~ 104 (338)
T 4a1f_A 32 GFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAV--FSL--EMSAEQLALRALSDLTSINMHD 104 (338)
T ss_dssp SCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEE--EES--SSCHHHHHHHHHHHHHCCCHHH
T ss_pred CChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEE--EeC--CCCHHHHHHHHHHHhhCCCHHH
Confidence 3444544442 2233469999999999999999998873 2222234556 554 233334433332211
Q ss_pred --------------------------ccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799 404 --------------------------TQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHS 439 (501)
Q Consensus 404 --------------------------~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~ 439 (501)
..... ...+..++...++++... ..-+||+|.+..
T Consensus 105 l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~-~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 105 LESGRLDDDQWENLAKCFDHLSQKKLFFYDK-SYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHSCEEEECC-TTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCC-CCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 00011 233567777777766543 467899997653
No 297
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.52 E-value=0.08 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+|+.|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999865
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.49 E-value=0.022 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999875
No 299
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.48 E-value=0.022 Score=50.66 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..++++|.|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347999999999999999999876
No 300
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.48 E-value=0.064 Score=63.30 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=61.6
Q ss_pred hHHHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799 331 DILKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD 409 (501)
Q Consensus 331 ~~~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 409 (501)
-...|..+|. .+=..-+++.|+|++|+|||+||.+++. .....-..++| ++.....+.. . +..++.+...
T Consensus 367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vly--is~E~s~~~~--~---a~~lGvd~~~ 437 (2050)
T 3cmu_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI--Y---ARKLGVDIDN 437 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEE--ECTTSCCCHH--H---HHHTTCCTTT
T ss_pred CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEcCCCHHHH--H---HHHcCCCHHH
Confidence 3445555553 2223447999999999999999999887 33333235667 6665554432 1 4444433211
Q ss_pred ----CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799 410 ----EESSLDDLESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 ----~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
+..+.+++...+..... ...-+||+|.+..
T Consensus 438 L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred eEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 34566777777765553 3456899999754
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.47 E-value=0.017 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.045 Sum_probs=20.0
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999974
No 302
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.46 E-value=0.028 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 303
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.46 E-value=0.014 Score=51.63 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=58.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC---CCCHHHHHHHHHHH---hcCC--CCcCc--------
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE---ELERRELVTDILKQ---VGGS--KVEKQ-------- 219 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~---~~~~~~l~~~i~~~---~~~~--~~~~~-------- 219 (501)
...|-|++-.|.||||+|--..- .-....+.+ .++...+ ......++..+--. ++.. .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal-RA~g~G~rV-~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA-RAVGHGKNV-GVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH-HHHHTTCCE-EEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH-HHHHCCCeE-EEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35667777788999999865542 111222322 2332222 23444444443100 0000 00000
Q ss_pred chHHHHHHHHccCCeE-EEEEecCCCh-----hHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 220 LDPQKKLRKLFTENRY-LVVIINARTP-----DIWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 220 ~~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
......+++.+.+.+| |||||++-.. ...+++...+.......-||+|+|+..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1124566777766666 9999997332 112344444444444667999999874
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.45 E-value=0.015 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=16.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.42 E-value=0.017 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.42 E-value=0.023 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.024 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 308
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.41 E-value=0.091 Score=51.29 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=51.8
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhccccccccc---c-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------C-
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYF---Q-CRAWVPVPEELERRELVTDILKQVGGSKVE-----------K- 218 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F---~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~- 218 (501)
.-.++.|+|.+|+|||||+..+.......... . ..+|+.....+....+ ..+.+.++..... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999887432111111 2 3488887666554443 3344444322100 0
Q ss_pred --cchHHHHHHHHcc------CCeEEEEEecCCC
Q 010799 219 --QLDPQKKLRKLFT------ENRYLVVIINART 244 (501)
Q Consensus 219 --~~~~~~~l~~~l~------~kr~LlVlDdv~~ 244 (501)
.......+...+. .+--+||||.+..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 0112334444453 3566999999865
No 309
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.41 E-value=0.024 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 310
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.06 Score=53.59 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=35.5
Q ss_pred cccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||.||+.+.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 5678888888887776531 1 123456788999999999999999853
No 311
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.064 Score=62.46 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799 333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-- 409 (501)
Q Consensus 333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-- 409 (501)
..|..+|. .+=..-+++.|+|++|+|||+||.+++. .....-..++| ++.....+.. . +..++.+...
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vly--is~E~s~~~~--~---a~~lGvd~~~L~ 439 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI--Y---ARKLGVDIDNLL 439 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--ECTTSCCCHH--H---HHHTTCCGGGCE
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEE--EEccCchHHH--H---HHHcCCCHHHeE
Confidence 44444443 2223447999999999999999999887 33333345677 7765555432 1 4444433211
Q ss_pred --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799 410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS 439 (501)
Q Consensus 410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~ 439 (501)
...+.+++...+..... ...-+||+|.+..
T Consensus 440 i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 34456666666665553 3456999999865
No 312
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.40 E-value=0.016 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999877
No 313
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.40 E-value=0.026 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999877
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.37 E-value=0.025 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....++.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999877
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.37 E-value=0.017 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=21.4
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|.|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999874
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.36 E-value=0.024 Score=49.61 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..|+|.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 317
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.35 E-value=0.023 Score=60.00 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=38.0
Q ss_pred cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 4578999999998888887543 5899999999999999999987
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.35 E-value=0.021 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.35 E-value=0.016 Score=50.00 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=20.6
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++.+|.|.|+.|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999874
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.34 E-value=0.022 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999887
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.31 E-value=0.024 Score=49.64 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=41.9
Q ss_pred cCCceEEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeC---ChHHHhhcCC--CCcceeCCCCChHHHHHH
Q 010799 425 LYEKRYLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITR---EAYVARSFSP--SIFLHQLRPLNEEESGKL 494 (501)
Q Consensus 425 l~~~r~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR---~~~~~~~~~~--~~~~~~l~~L~~~ea~~L 494 (501)
+..++-+++||++.. ......+...+.. .+..+|++|. +......+.. ...++.+...+.++...-
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~ 171 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILED 171 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHH
Confidence 556677999999532 2233445555544 3555777773 4444444432 357899998888776654
Q ss_pred HHHh
Q 010799 495 FQRR 498 (501)
Q Consensus 495 f~~~ 498 (501)
+...
T Consensus 172 l~~~ 175 (178)
T 1ye8_A 172 ILSL 175 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 322
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.31 E-value=0.026 Score=53.19 Aligned_cols=47 Identities=9% Similarity=-0.069 Sum_probs=33.8
Q ss_pred ccccccchhhHHHHHHHHhc--C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIR--S---------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+.++.++... . ..... +.|+|.+|+|||||++.+.+.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 46789988777766654431 1 11123 889999999999999999864
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.30 E-value=0.028 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+|+|.|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.28 E-value=0.029 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999887
No 325
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.28 E-value=0.028 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+.++|.|.|++|+||+|+|..++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5668999999999999999999887
No 326
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.27 E-value=0.018 Score=51.38 Aligned_cols=22 Identities=18% Similarity=-0.049 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999874
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.26 E-value=0.023 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.26 E-value=0.02 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.++|.|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998865
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.26 E-value=0.017 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+.|.++|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999873
No 330
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.24 E-value=0.25 Score=49.87 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
..-.++.|.|.+|+|||++|..++.+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 33469999999999999999998873
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.24 E-value=0.049 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.23 E-value=0.025 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999876
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.23 E-value=0.019 Score=50.56 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999973
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.23 E-value=0.026 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.22 E-value=0.029 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 336
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.21 E-value=0.15 Score=52.35 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=51.8
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEeCCCCChHHHHHHHHHHhcc-C---------------
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYVSQDFDMRSVFADILRQLTQ-D--------------- 406 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~-~--------------- 406 (501)
..-.++.|.|.+|+|||+||..++.+ .... =..++| ++.. .+...+...++..... +
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~--~s~E--~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~ 313 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGL--AMLE--ESVEETAEDLIGLHNRVRLRQSDSLKREIIENG 313 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEE--EESS--SCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEE--Eecc--CCHHHHHHHHHHHHcCCChhhccccccCCCCHH
Confidence 34469999999999999999998873 3322 234566 5543 2334444433221110 0
Q ss_pred ------------C------CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799 407 ------------E------VDEESSLDDLESEFTGILYE-KRYLVVLDDVHS 439 (501)
Q Consensus 407 ------------~------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~ 439 (501)
. .....+.+++...+.+.... ..-+||+|.+..
T Consensus 314 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 314 KFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 0 00114566777777666543 345899999764
No 337
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.21 E-value=0.12 Score=51.61 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+|.|.|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999887
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.21 E-value=0.014 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.2
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999873
No 339
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.21 E-value=0.26 Score=51.74 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=67.0
Q ss_pred eEEEEEecCCCChHHHHHHHHccccc-ccC--Cc-cceeEEEEeCC----CCChHHHH--------------HHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYT-KKN--FP-CRAWANVYVSQ----DFDMRSVF--------------ADILRQLT 404 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~--f~-~~~w~~v~~~~----~~~~~~~~--------------~~i~~~l~ 404 (501)
.+++|.|+.|+|||||.+.++.-... ... +. .+.+ +.-.. ..++.+.+ .+++..++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~--v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY--KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEE--EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 59999999999999999998873211 111 11 1222 22211 11222222 22233333
Q ss_pred cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
..... ..+.-+...-.+...|...+-+|+||+--+ ......+...+.......|..||++|.+...+..+.
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a 539 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 539 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 32111 122234445566677777888999999654 222222333222200123678999999987766554
No 340
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.20 E-value=0.19 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=20.6
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+..+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999877753
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.20 E-value=0.027 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 342
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.19 E-value=0.018 Score=51.35 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.1
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++|+|..|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999874
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.19 E-value=0.021 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999877
No 344
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.18 E-value=0.084 Score=51.54 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC-----CCC-------------------------------
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ-----DFD------------------------------- 391 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~-----~~~------------------------------- 391 (501)
+++|.|+.|+|||||.+.++. -....-..+.++...+.. ...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG--LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT--SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred EEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Q ss_pred ------hHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCC
Q 010799 392 ------MRSVFADILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQA 454 (501)
Q Consensus 392 ------~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~ 454 (501)
...-..++++.++..... +.+.-+...-.+.+.|-.++-+|+||+--+ ...+..+...+..
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-- 188 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-- 188 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--
Q ss_pred CCCCCEEEEEeCChHHHhhcC
Q 010799 455 SPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 455 ~~~~~~iIiTtR~~~~~~~~~ 475 (501)
..|..+|++|.+...+..++
T Consensus 189 -~~g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 189 -RLGVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp -HHCCEEEEEESCHHHHHHHC
T ss_pred -hcCCEEEEEeCCHHHHHHhC
No 345
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.29 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 5999999999999999999875
No 346
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.17 E-value=0.027 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++|.|++|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.15 E-value=0.024 Score=50.39 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=21.9
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+..+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999974
No 348
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.14 E-value=0.018 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.13 E-value=0.031 Score=51.55 Aligned_cols=40 Identities=13% Similarity=-0.090 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+.++.+.+........+|.|.|++|+||||+|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344455554443333567899999999999999999873
No 350
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.11 E-value=0.05 Score=53.28 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3344444544456678999999999999999988865
No 351
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.10 E-value=0.1 Score=53.02 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHcc
Q 010799 347 FLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
+.+.|.|++|+|||+++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999988773
No 352
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.08 E-value=0.052 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.8
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
++.++|+|+|-|||||||.+.-+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4568999999999999998876655
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.08 E-value=0.024 Score=49.83 Aligned_cols=23 Identities=17% Similarity=-0.188 Sum_probs=20.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.08 E-value=0.028 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.06 E-value=0.033 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.02 E-value=0.03 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 357
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.042 Score=55.05 Aligned_cols=47 Identities=6% Similarity=-0.029 Sum_probs=36.1
Q ss_pred cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788999988888776642 1123455788999999999999999853
No 358
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.01 E-value=0.021 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.090 Sum_probs=19.4
Q ss_pred EEEEEeeCChhhHHHHhhhhcc
Q 010799 158 TISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988753
No 359
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.99 E-value=0.025 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=21.2
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.99 E-value=0.085 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...++++.|++|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988776
No 361
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.99 E-value=0.1 Score=52.63 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=47.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCC-ChHHHHHHHHHHhccCCC-----CCCCCHH--H-
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDF-DMRSVFADILRQLTQDEV-----DEESSLD--D- 416 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~--~- 416 (501)
..++|+|.+|+|||+|+..+.. .....+ ...++ +.+.... ...+++.++...-..... ...++.. .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~--~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVF--AGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEE--EEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEE--eeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 3689999999999999999887 333222 22344 5554443 344444444332100000 0011111 1
Q ss_pred ---HHHHHHHhc---CCceEEEEEcCCCC
Q 010799 417 ---LESEFTGIL---YEKRYLVVLDDVHS 439 (501)
Q Consensus 417 ---~~~~l~~~l---~~~r~LlVlDnv~~ 439 (501)
..-.+.+++ .++.+||++||+..
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111334443 46799999999854
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.99 E-value=0.024 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.4
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|+|+|.+|+|||||++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.2 Score=51.92 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+...-.+...|..++-+|+||+--+ ......+...+.. ...|..||++|.+......++
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~--l~~g~tii~vsHdl~~~~~~~ 204 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE--LLKNKYVIVVDHDLIVLDYLT 204 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH--HCTTSEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH--HhCCCEEEEEEeChHHHHhhC
Confidence 3444455566667777999999754 2222233333332 122778999999877666554
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.97 E-value=0.03 Score=49.27 Aligned_cols=21 Identities=52% Similarity=0.831 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 365
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.96 E-value=0.017 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999874
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.96 E-value=0.041 Score=49.74 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.8
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
+...|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888754
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.045 Score=50.11 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV 386 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~ 386 (501)
.-.++.|.|++|+||||||..++. .....-..++| ++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~--~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIY--VAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEE--EES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEc
Confidence 336999999999999999988766 22222234566 554
No 368
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.92 E-value=0.023 Score=54.59 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=20.5
Q ss_pred CeeEEEEEeeCChhhHHHHhhhh
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
+.+||+|.|-|||||||.+-.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHH
Confidence 57999999999999999887665
No 369
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.92 E-value=0.16 Score=52.62 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred eEEEEEecCCCChHHHHHHHHccccc-ccC--Cc-cceeEEEEeCC----CCChHHHHHHH--------------HHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYT-KKN--FP-CRAWANVYVSQ----DFDMRSVFADI--------------LRQLT 404 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~--f~-~~~w~~v~~~~----~~~~~~~~~~i--------------~~~l~ 404 (501)
.+++|.|+.|+|||||++.++.-... ... +. .+.+ +.-.. ..++.+.+... +..+.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~--v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE--EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 59999999999999999999873211 111 11 1222 32211 11333222211 11111
Q ss_pred cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
..... ..+.-+...-.+...+..++-+|+||+--+ ......+...+.......|..||++|.+...+..++
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 11000 122234445566777777888999999755 222222333322200023678999999987766544
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.92 E-value=0.017 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.021 Sum_probs=20.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||||+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999874
No 371
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.91 E-value=0.044 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....++.|.|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999877
No 372
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.90 E-value=0.21 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCChHHHHHHHHcc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
..-.++.|.|.+|+||||||..++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33469999999999999999998873
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.89 E-value=0.036 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.88 E-value=0.022 Score=50.56 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=19.3
Q ss_pred EEEEEeeCChhhHHHHhhhhc
Q 010799 158 TISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 375
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.86 E-value=0.18 Score=50.63 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 141 EVNKLADFLIRS-------HSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 141 ~~~~l~~~L~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.++|.++|... ..+.++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666532 12468999999999999999877763
No 376
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.85 E-value=0.057 Score=48.81 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
+....+...+.. .....|+|.|.+|+|||||+..++..
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444432 35688999999999999999998873
No 377
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.82 E-value=0.023 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=20.0
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 378
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.82 E-value=0.022 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.5
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+|+|+|+.|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.82 E-value=0.047 Score=53.50 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455556654445678999999999999999988753
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.82 E-value=0.033 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.82 E-value=0.032 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999887
No 382
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.81 E-value=0.024 Score=51.49 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=20.0
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999873
No 383
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.81 E-value=0.034 Score=54.07 Aligned_cols=46 Identities=11% Similarity=-0.047 Sum_probs=32.6
Q ss_pred ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
..+++|.+..+..+...+.... ..-+-++|.+|+|||+||+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3568999886665444443221 223789999999999999999863
No 384
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.80 E-value=0.027 Score=55.23 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc-cccceeEEEEcCCCCCHHHHHHHHHHHhcC-----CCCc
Q 010799 144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAWVPVPEELERRELVTDILKQVGG-----SKVE 217 (501)
Q Consensus 144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~-----~~~~ 217 (501)
+.++.+..-. .-..++|+|.+|+|||||++.+.+.-... ..+.|. ++.+.+....-. ++.+.+.. ..++
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~---~~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVT---EMQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHH---HHHTTCSSEEEEECTTS
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHH---HHHHHhCeEEEEeCCCC
Confidence 4666666432 23478999999999999999886432111 123443 577776543221 22233311 0011
Q ss_pred Cc-ch---------HHHHHHHHccCCeEEEEEecCCC-hhHHHHHhh
Q 010799 218 KQ-LD---------PQKKLRKLFTENRYLVVIINART-PDIWDILKY 253 (501)
Q Consensus 218 ~~-~~---------~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~l~~ 253 (501)
+. .. .++.+++ +++..||++||+.. ...+.++..
T Consensus 238 p~~~r~~~a~~alt~AEyfrd--~G~dVLil~DslTR~A~A~revs~ 282 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITRLARAYNTVVP 282 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCchHHHHHHHHHHH
Confidence 10 00 1223332 58999999999854 233444443
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.77 E-value=0.037 Score=47.85 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++.|.|++|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 386
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.77 E-value=0.038 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6999999999999999998875
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.77 E-value=0.026 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=20.0
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 388
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.75 E-value=0.14 Score=51.51 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhcCC------CC
Q 010799 144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVGGS------KV 216 (501)
Q Consensus 144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~~~------~~ 216 (501)
+.++.|..-. +=.-++|.|.+|+|||+|++.+.++. .+.+-+.++++-+.+... ..++++++...-... ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4677776422 12457999999999999998887532 123346778888887754 466777776542221 00
Q ss_pred ----cCcch----------HHHHHHHHc---cCCeEEEEEecCCC
Q 010799 217 ----EKQLD----------PQKKLRKLF---TENRYLVVIINART 244 (501)
Q Consensus 217 ----~~~~~----------~~~~l~~~l---~~kr~LlVlDdv~~ 244 (501)
.+.++ ..-.+.+++ +++..||++||+..
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 01111 112233343 47899999999853
No 389
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.74 E-value=0.027 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=21.5
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+..+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 390
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.74 E-value=0.038 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|++|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999999876
No 391
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.73 E-value=0.042 Score=50.68 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998876
No 392
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.73 E-value=0.031 Score=50.81 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=57.2
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc----CcchHHHHHHHHcc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE----KQLDPQKKLRKLFT 231 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~----~~~~~~~~l~~~l~ 231 (501)
-.++.|.|..|.||||++..+.+.... ....+ +.+.... +.. -...++++++..... ...++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kV-li~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY-ADVKY-LVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEE-EEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468889999999999988766543221 11222 2222221 111 112344444432211 11234445555554
Q ss_pred CCeE-EEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799 232 ENRY-LVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD 272 (501)
Q Consensus 232 ~kr~-LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~ 272 (501)
+.++ +||+|.+.. .+..+.+.. +.+ .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 5555 999999753 333344433 222 2678999988544
No 393
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.73 E-value=0.02 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999873
No 394
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.72 E-value=0.041 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999877
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.72 E-value=0.043 Score=49.43 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
++..+.+...+... +..+|.|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444555544332 5789999999999999999888753
No 396
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.72 E-value=0.024 Score=50.86 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=20.8
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.71 E-value=0.035 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 398
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.70 E-value=0.021 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=19.6
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 399
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.70 E-value=0.02 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999874
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.69 E-value=0.041 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.5
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+..+++|+|..|+|||||++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988864
No 401
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.68 E-value=0.028 Score=49.36 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=21.0
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.|.|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 402
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.67 E-value=0.031 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=21.6
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.|.|++|+||||+++.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999874
No 403
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.33 Score=50.98 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred eEEEEEecCCCChHHHHHHHHcccccc-c-CCc--cceeEEEEeCC----CCChH--------------HHHHHHHHHhc
Q 010799 347 FLISVAGAAGSGKTALVKTIYESSYTK-K-NFP--CRAWANVYVSQ----DFDMR--------------SVFADILRQLT 404 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~-~f~--~~~w~~v~~~~----~~~~~--------------~~~~~i~~~l~ 404 (501)
.+++|.|+.|+|||||++.++.-.... . ... .+.+ +.... ..++. ....+++..+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~--~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSM--KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEE--ECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEE--ecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 579999999999999999987632111 0 000 0111 11100 00111 12233344443
Q ss_pred cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
..... ..+.-+...-.+...|..++-+|+||+--.. .....+...+.......|..||++|.+...+..+.
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 32211 2233445556677778888889999996541 11222222222100023778999999987776654
No 404
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.67 E-value=0.032 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|.|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 405
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.65 E-value=0.042 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+++|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4457999999999999999998876
No 406
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.64 E-value=0.043 Score=54.13 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=33.3
Q ss_pred cccccchhhHHHHHHHHh----c------------------------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 133 TGILDLNKEVNKLADFLI----R------------------------SHSSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~----~------------------------~~~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..++|.+..++.|...+. . .......+-++|.+|+|||+||+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357788877777776662 0 011234578999999999999999985
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.64 E-value=0.028 Score=52.23 Aligned_cols=22 Identities=9% Similarity=-0.171 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
++|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999874
No 408
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.64 E-value=0.021 Score=49.79 Aligned_cols=23 Identities=22% Similarity=-0.057 Sum_probs=20.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.++|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999874
No 409
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.025 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.0
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 410
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.62 E-value=0.14 Score=51.77 Aligned_cols=99 Identities=17% Similarity=0.081 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhcCC-------C
Q 010799 144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVGGS-------K 215 (501)
Q Consensus 144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~~~-------~ 215 (501)
+.++.|..-. +=.-++|.|-+|+|||+|++.+.++. .+.+-+.++++.+.+... ..+++.++...-... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 3566666432 12357999999999999998887532 123457889999988764 466777776542111 0
Q ss_pred Cc----Ccch----------HHHHHHHHc---cCCeEEEEEecCCC
Q 010799 216 VE----KQLD----------PQKKLRKLF---TENRYLVVIINART 244 (501)
Q Consensus 216 ~~----~~~~----------~~~~l~~~l---~~kr~LlVlDdv~~ 244 (501)
.. ..++ ..-.+.+++ +++..||++||+..
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 1110 123344555 35899999999853
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.62 E-value=0.047 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+..+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.60 E-value=0.034 Score=49.29 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=22.3
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhhc
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+..+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998874
No 413
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.60 E-value=0.055 Score=51.28 Aligned_cols=24 Identities=21% Similarity=-0.002 Sum_probs=21.3
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999974
No 414
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.047 Score=54.75 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=36.1
Q ss_pred cccccchhhHHHHHHHHhc----C-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799 133 TGILDLNKEVNKLADFLIR----S-------HSSLFTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 133 ~~~vg~~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||+||+.+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 6788999998888776431 1 123556788999999999999999853
No 415
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.56 E-value=0.035 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..|+|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 416
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.53 E-value=0.12 Score=52.01 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=54.5
Q ss_pred HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhc--------CCC
Q 010799 145 LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVG--------GSK 215 (501)
Q Consensus 145 l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~--------~~~ 215 (501)
.++.|..-. +-..++|+|.+|+|||||++.+.++.... +-+.++++.+.+... ..++..++...-. ...
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 455565321 11358899999999999999887543322 224567777777653 3455554543200 000
Q ss_pred CcC-cchH-----HHHHHHHc---cCCeEEEEEecCCC
Q 010799 216 VEK-QLDP-----QKKLRKLF---TENRYLVVIINART 244 (501)
Q Consensus 216 ~~~-~~~~-----~~~l~~~l---~~kr~LlVlDdv~~ 244 (501)
.++ .... .-.+.+++ ++++.||++||+..
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 110 0000 11233333 58999999999853
No 417
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.53 E-value=0.05 Score=52.32 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=21.4
Q ss_pred CCeeEEEEEeeCChhhHHHHhhhh
Q 010799 154 SSLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 154 ~~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
....+|+|.|..|+|||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999886
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.52 E-value=0.031 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.042 Sum_probs=20.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.51 E-value=0.044 Score=50.81 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999885
No 420
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.50 E-value=0.082 Score=47.00 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=30.3
Q ss_pred EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~ 400 (501)
.|+|-|+-|+||||.++.++. .....-..+.+ ..-+........+..++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~--treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVIL--KREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEE--EECCCCCcHHHHHHHHh
Confidence 478899999999999999887 44443333344 33333333444444444
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.49 E-value=0.05 Score=50.45 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.3
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.++|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 422
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.49 E-value=0.028 Score=50.38 Aligned_cols=23 Identities=9% Similarity=-0.175 Sum_probs=20.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999873
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.48 E-value=0.11 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++++|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 424
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.46 E-value=0.049 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.676 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.44 E-value=0.11 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+|+.|+|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999998765
No 426
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.43 E-value=0.053 Score=52.62 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=26.8
Q ss_pred hhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799 330 NDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 330 ~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.-.+++.+.+.. ..+....+.|+|++|+||||+++.++.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344444444421 123456799999999999999998776
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.43 E-value=0.049 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+|+|.|++|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999877
No 428
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.43 E-value=0.18 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=20.8
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+..+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988863
No 429
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.42 E-value=0.032 Score=48.30 Aligned_cols=24 Identities=25% Similarity=-0.011 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 430
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.41 E-value=0.033 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 431
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.40 E-value=0.024 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=19.3
Q ss_pred EEEEEeeCChhhHHHHhhhhc
Q 010799 158 TISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 432
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.39 E-value=0.055 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|+|++|+||||++..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998875
No 433
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.39 E-value=0.056 Score=53.30 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=60.5
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhcccccccccceeE-EEEcCCCCCHHHHHHHHHHH--hcCCCCcCcchHHHHHHHHcc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRA-WVPVPEELERRELVTDILKQ--VGGSKVEKQLDPQKKLRKLFT 231 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~-wv~vs~~~~~~~l~~~i~~~--~~~~~~~~~~~~~~~l~~~l~ 231 (501)
.-.+++|+|..|+|||||++.+..--. ......+ ++...-.+....- ..++.| ++. ........++..|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~----~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCSHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccC-ceEEEeeecCC----CHHHHHHHHHHHhh
Confidence 346899999999999999998864211 1111222 2221111000000 000000 000 11223567777777
Q ss_pred CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799 232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR 275 (501)
Q Consensus 232 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~ 275 (501)
...-+|++|.+.+.+....+.... ..|..|+.|+...+++.
T Consensus 208 ~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 208 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred hCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 666789999998766554433322 34667899998877654
No 434
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.38 E-value=0.034 Score=48.65 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=19.9
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..|.+.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999873
No 435
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.37 E-value=0.031 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=20.5
Q ss_pred eeEEEEEeeCChhhHHHHhhhh
Q 010799 156 LFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
..+|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.35 E-value=0.035 Score=51.80 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=20.8
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 437
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.33 E-value=0.036 Score=48.64 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.2
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|.+.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.32 E-value=0.22 Score=51.47 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799 415 DDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475 (501)
Q Consensus 415 ~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~ 475 (501)
+...-.+...|..++-+|+||+--+. .....+...+.......|..||++|.+...+..++
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 34455566666677789999996541 21222222222200124778899999887776654
No 439
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.31 E-value=0.057 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|+.|+|||||.+.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999887
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.31 E-value=0.034 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.050 Sum_probs=20.5
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.30 E-value=0.024 Score=49.61 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=19.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 442
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.30 E-value=0.17 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.185 Sum_probs=20.8
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999887763
No 443
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.29 E-value=0.027 Score=49.10 Aligned_cols=23 Identities=17% Similarity=-0.119 Sum_probs=16.5
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 444
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.27 E-value=0.37 Score=49.25 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.++|+|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988875
No 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.27 E-value=0.064 Score=48.27 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=28.3
Q ss_pred chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799 329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
.+..+.+.+.+.. .+.+.++|.|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444455554422 35689999999999999999998873
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.26 E-value=0.11 Score=60.48 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=61.0
Q ss_pred CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----CCCCHHHHHHH
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD----EESSLDDLESE 420 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~ 420 (501)
+-++|-|+|+.|+||||||.++.. .....=...+| +.+.+..+..- +..++.+... ++.+-++.+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~--i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--ECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEE--EecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHH
Confidence 447999999999999999999887 44444455667 77766555442 5666555432 45566777777
Q ss_pred HHHhcCCc-eEEEEEcCCCC
Q 010799 421 FTGILYEK-RYLVVLDDVHS 439 (501)
Q Consensus 421 l~~~l~~~-r~LlVlDnv~~ 439 (501)
+...+++. .-+||+|-|..
T Consensus 1501 ~~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHcCCCCEEEEccHHh
Confidence 77777654 55999999754
No 447
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.26 E-value=0.038 Score=53.06 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.5
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999874
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.25 E-value=0.029 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=18.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+..+|+|.|++|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 449
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.25 E-value=0.039 Score=48.42 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 450
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.23 E-value=0.1 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...+++|+|++|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988776
No 451
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.23 E-value=0.046 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-.+++|.|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999998873
No 452
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.23 E-value=0.096 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....+++|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998876
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.22 E-value=0.076 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCceEEEEEecCCCChHHHHHHHHc
Q 010799 343 SDKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 343 ~~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
-....+++|+|++|+|||||++.++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34557999999999999999999887
No 454
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.17 E-value=0.026 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 455
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.038 Score=49.36 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.6
Q ss_pred eEEEEEeeCChhhHHHHhhhhcc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYEC 179 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~ 179 (501)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.12 E-value=0.029 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.049 Sum_probs=19.8
Q ss_pred eEEEEEeeCChhhHHHHhhhhc
Q 010799 157 FTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 457
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.12 E-value=0.062 Score=51.30 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---------CCeeEEEEEeeCChhhHHHHhhhh
Q 010799 142 VNKLADFLIRSH---------SSLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 142 ~~~l~~~L~~~~---------~~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
.++|.+.|.... ..-.+++|+|..|+|||||++.+.
T Consensus 77 ~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 77 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp HHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHH
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.12 E-value=0.053 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHcc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYES 369 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~~ 369 (501)
...+|+|.|+.|+|||+||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999883
No 459
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.10 E-value=0.029 Score=50.85 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999874
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.10 E-value=0.6 Score=42.38 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=17.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIY 367 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~ 367 (501)
+.+.+.|+.|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 589999999999998665543
No 461
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.09 E-value=0.037 Score=49.19 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=21.2
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 462
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.09 E-value=0.036 Score=51.43 Aligned_cols=22 Identities=18% Similarity=-0.132 Sum_probs=20.5
Q ss_pred eeEEEEEeeCChhhHHHHhhhh
Q 010799 156 LFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 463
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.04 E-value=0.17 Score=45.35 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=50.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHh
Q 010799 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGI 424 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~ 424 (501)
-.+..++|+-|.||||.+..... +....-..++. +.... +.......++..++..... ...+.+ .+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli--~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIV--FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEE--EECC-------------------CCEEECSSGG----GGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEE--EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence 36888999999999998888776 33332222222 22111 1111122344444332211 011111 22233
Q ss_pred cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799 425 LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITRE 467 (501)
Q Consensus 425 l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~ 467 (501)
+.++--+|++|+++-. +.+ .++..+.. .+..||+|.++
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V-~~l~~l~~----~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIV-EVVQVLAN----RGYRVIVAGLD 137 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHH-HHHHHHHH----TTCEEEEEECS
T ss_pred HhcCCCEEEEECcccCCHHHH-HHHHHHhh----CCCEEEEEecc
Confidence 3333349999998753 444 33333322 27899999984
No 464
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.02 E-value=0.043 Score=46.95 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+++++|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.02 E-value=0.048 Score=51.50 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhh
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999987
No 466
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.02 E-value=0.054 Score=48.68 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 467
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.99 E-value=0.055 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
..+++|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 468
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.98 E-value=0.035 Score=50.63 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=15.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010799 347 FLISVAGAAGSGKTALVKTIY 367 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~ 367 (501)
.+++|.|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.97 E-value=0.06 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.++|+|.|+.|+|||+||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999876
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.97 E-value=0.054 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+|+|.|++|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999877
No 471
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.96 E-value=0.056 Score=59.62 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=19.5
Q ss_pred eeEEEEEeeCChhhHHHHhhh
Q 010799 156 LFTISVVDVAGSVMTTDLWKS 176 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v 176 (501)
-.+++|+|+.|.|||||.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999988
No 472
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.94 E-value=0.34 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+++.|.|++|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999988876
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.91 E-value=0.061 Score=47.63 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
+.|.|.|++|+|||+||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999887
No 474
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.91 E-value=0.041 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.4
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999874
No 475
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.89 E-value=0.079 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988863
No 476
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.89 E-value=0.084 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+|+.|+|||||++.+..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 6999999999999999998765
No 477
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.88 E-value=0.064 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHc
Q 010799 346 NFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...|+|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 478
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.87 E-value=0.041 Score=47.19 Aligned_cols=21 Identities=14% Similarity=-0.164 Sum_probs=19.2
Q ss_pred EEEEEeeCChhhHHHHhhhhc
Q 010799 158 TISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.85 E-value=0.3 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.3
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988763
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.80 E-value=0.073 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHc
Q 010799 344 DKNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 344 ~~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
...++++|.|+.|+|||+||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999999887
No 481
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.79 E-value=0.059 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHc
Q 010799 348 LISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 348 ~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 482
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.76 E-value=0.049 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.079 Sum_probs=21.1
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
.-.+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.75 E-value=0.062 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 484
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.74 E-value=0.075 Score=50.79 Aligned_cols=24 Identities=38% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeeEEEEEeeCChhhHHHHhhhhc
Q 010799 155 SLFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 155 ~~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...+|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999988864
No 485
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.74 E-value=0.043 Score=48.18 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEeeCChhhHHHHhhhhc
Q 010799 158 TISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~ 178 (501)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 486
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.74 E-value=0.11 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHc
Q 010799 345 KNFLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 345 ~~~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
....|+|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 487
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.73 E-value=0.046 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 488
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.69 E-value=0.074 Score=48.73 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHHhhhhcccccccccceeEEE
Q 010799 158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV 192 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv 192 (501)
+++|+|..|+|||||.+.+. .........+++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~ 64 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYI 64 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCceEEEE
No 489
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.68 E-value=0.37 Score=53.16 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCChHHHHHHH
Q 010799 346 NFLISVAGAAGSGKTALVKTI 366 (501)
Q Consensus 346 ~~~v~I~G~gGvGKT~LA~~~ 366 (501)
..+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 490
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.67 E-value=0.047 Score=48.80 Aligned_cols=23 Identities=17% Similarity=-0.185 Sum_probs=20.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
..+|.|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 491
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.65 E-value=0.052 Score=49.11 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=34.6
Q ss_pred eeEEEEEeeCChhhHHHHhhhhcccccc---c-ccceeEEEEcCCCCCHHHHHHHHHHHhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYECETVK---E-YFQCRAWVPVPEELERRELVTDILKQVG 212 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~~~ 212 (501)
-.+++|+|.+|+|||||++.+....... . .-...+|+.-...+.... +..+.+.++
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4689999999999999999986421111 1 123467776655444443 233444443
No 492
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.64 E-value=0.036 Score=50.53 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=15.7
Q ss_pred eEEEEEeeCChhhHHHHhhhh
Q 010799 157 FTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~ 177 (501)
.+++|+|..|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999887
No 493
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.63 E-value=0.052 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 494
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.63 E-value=0.05 Score=49.48 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEeeCChhhHHHHhhhh
Q 010799 158 TISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 158 vi~I~G~~GvGKTtLa~~v~ 177 (501)
+++|+|..|+|||||.+.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
No 495
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.62 E-value=0.08 Score=51.74 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---------CCeeEEEEEeeCChhhHHHHhhhh
Q 010799 142 VNKLADFLIRSH---------SSLFTISVVDVAGSVMTTDLWKSY 177 (501)
Q Consensus 142 ~~~l~~~L~~~~---------~~~~vi~I~G~~GvGKTtLa~~v~ 177 (501)
.++|.+.|.... ..-.+++|+|..|+|||||++.+.
T Consensus 134 ~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 134 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp HHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHH
No 496
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.61 E-value=0.046 Score=49.56 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=20.7
Q ss_pred eeEEEEEeeCChhhHHHHhhhhc
Q 010799 156 LFTISVVDVAGSVMTTDLWKSYE 178 (501)
Q Consensus 156 ~~vi~I~G~~GvGKTtLa~~v~~ 178 (501)
-.+++|+|..|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999874
No 497
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.61 E-value=0.43 Score=58.31 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=62.5
Q ss_pred eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCC-CcCcchHHHHHHHHccC---
Q 010799 157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSK-VEKQLDPQKKLRKLFTE--- 232 (501)
Q Consensus 157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~l~~~l~~--- 232 (501)
.-|-+||.+|+||||+.+.+.+-......-.....+--++..+..++... +.... ...+.-+...+++..++
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~----~d~~t~eW~DGils~~~R~~~~~~~~ 999 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGS----MLKATLEWRDGLFTSILRRVNDDITG 999 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTE----ECTTTCCEECCSHHHHHHHHHTCCCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcce----ecCCCCeEecChHHHHHHHHHhcccc
Confidence 45778999999999998877642111111223333333444555554311 11111 11222345666665432
Q ss_pred ----CeEEEEEecCCChhHHHHHhhcCCCC-------------CCCcEEEEEeccccchh
Q 010799 233 ----NRYLVVIINARTPDIWDILKYLFPNS-------------SNGSRVILSFQEADAAR 275 (501)
Q Consensus 233 ----kr~LlVlDdv~~~~~~~~l~~~~~~~-------------~~gs~iivTtr~~~va~ 275 (501)
.+.-||+|+.-+..-.+.+-..+.++ .+..++|+-+.+-..|.
T Consensus 1000 ~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~AS 1059 (2695)
T 4akg_A 1000 TFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTT 1059 (2695)
T ss_dssp SCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSC
T ss_pred ccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCC
Confidence 27789999865543224454444443 24677888887777664
No 498
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=92.60 E-value=0.91 Score=36.23 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=44.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhh--cC--hh------hHHHHHHHHHHhHHHHHHHHhhhhhhcccc
Q 010799 23 EDEGLVAQLINSSEELEKVRKSWEEKEI--ND--VS------PKLLNAVSQVQDITDTFRIENCKRVYLGVI 84 (501)
Q Consensus 23 ~~~~~~~~l~~~~~~l~~~~~~~e~~~~--~~--~~------~~l~~~~~~~edllD~~~~~~~~~~~~~~~ 84 (501)
++.+...-+.....+++.+...++.-+. .+ .. ..++.|+.+++|+ .|+++++++.|....
T Consensus 13 ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl--aYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 13 LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVREL--SYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 3445555667778888888888877664 33 32 1389999999999 999999999885443
No 499
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.58 E-value=0.067 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 500
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.57 E-value=0.061 Score=56.64 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHc
Q 010799 347 FLISVAGAAGSGKTALVKTIYE 368 (501)
Q Consensus 347 ~~v~I~G~gGvGKT~LA~~~~~ 368 (501)
.+++|+|+.|+|||||++.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6999999999999999999875
Done!