Query 010800
Match_columns 501
No_of_seqs 120 out of 137
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 2E-114 3E-119 867.6 25.8 304 137-445 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 92.7 0.24 5.1E-06 47.9 5.8 110 282-422 84-199 (248)
3 cd00505 Glyco_transf_8 Members 87.9 2.9 6.2E-05 40.7 8.7 160 229-423 30-201 (246)
4 PF01501 Glyco_transf_8: Glyco 87.3 1.1 2.3E-05 41.9 5.2 48 281-330 86-133 (250)
5 PF03407 Nucleotid_trans: Nucl 65.4 16 0.00034 34.5 6.0 90 293-423 66-156 (212)
6 cd06429 GT8_like_1 GT8_like_1 61.3 13 0.00027 37.6 4.7 96 228-330 28-148 (257)
7 PLN02718 Probable galacturonos 53.8 29 0.00062 39.7 6.3 112 200-330 325-452 (603)
8 cd06432 GT8_HUGT1_C_like The C 44.9 32 0.0007 34.3 4.6 44 285-330 86-130 (248)
9 cd02537 GT8_Glycogenin Glycoge 41.5 1.2E+02 0.0025 29.9 7.8 53 263-316 53-112 (240)
10 PF03452 Anp1: Anp1; InterPro 39.0 32 0.0007 35.6 3.6 46 285-333 134-179 (269)
11 cd06431 GT8_LARGE_C LARGE cata 38.2 34 0.00074 34.9 3.6 98 228-330 29-135 (280)
12 PF05637 Glyco_transf_34: gala 35.9 26 0.00056 34.9 2.3 55 264-318 43-101 (239)
13 PF03314 DUF273: Protein of un 31.1 39 0.00085 34.2 2.7 51 287-343 35-85 (222)
14 PLN02742 Probable galacturonos 29.6 98 0.0021 35.1 5.6 121 202-329 229-386 (534)
15 PLN00176 galactinol synthase 26.7 1.2E+02 0.0027 32.1 5.6 104 198-316 18-135 (333)
16 PHA03283 envelope glycoprotein 20.4 1.6E+02 0.0035 33.4 5.1 52 47-108 394-445 (542)
17 KOG0400 40S ribosomal protein 20.0 98 0.0021 29.5 2.9 51 322-390 8-59 (151)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=1.6e-114 Score=867.63 Aligned_cols=304 Identities=51% Similarity=0.938 Sum_probs=295.2
Q ss_pred eeeEeeeccccCCCCCCCCCCCCCCChhhhhhccCCCCceeeccccccCCCCCCChhcHHHhhcCCEEEEEeeecCCCCC
Q 010800 137 NLTYFLEDEFVHNGSQSSPLFGGHQSWLQREESFKLNSNMKVHCGFMRNGGAEMSPLDVKYVKKCKFVVASGIFDGYDVP 216 (501)
Q Consensus 137 ~l~Yi~~~~~~~~~~~~~~~FgG~~s~~~R~~sf~~~~~~~vhCGF~~~~gfdi~e~d~~~m~~criVVyTAIFG~YD~L 216 (501)
||+||.+|+++. +.++++|||||||+||++||+++++|+|||||++++||||||.|+.||++|+|||||||||+||+|
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~~~gf~i~~~d~~~m~~c~vvV~saIFG~yD~l 78 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVKNTGFDISESDRRYMEKCRVVVYSAIFGNYDKL 78 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceeccccccCCCCCCCHHHHHHHhcCCEEEEEEecCCCccc
Confidence 799999998555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCCccccCCccccccccCCCCCCE
Q 010800 217 HQPSNISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDEPRRNGKVPKILTHRLFPQAQY 296 (501)
Q Consensus 217 ~~P~~is~~s~d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~lpy~D~rrngRipKiLpHrLFPny~Y 296 (501)
+||++|++.++++|||+||||++|+++|++++.++ ++++++|+||||+|+++||+|+|||||+||+|||+|||||+|
T Consensus 79 ~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~---~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp~y~y 155 (305)
T PF04765_consen 79 RQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIP---DENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFPNYDY 155 (305)
T ss_pred cCchhhCHHHhcCccEEEEEehhhHHHHHhcCCcc---ccccccCceEEEEecCCCCcchhhcCcccceeccccCCCCce
Confidence 99999999999999999999999999999988874 356799999999999999999999999999999999999999
Q ss_pred EEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccCC-CC
Q 010800 297 SIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIKK-NT 375 (501)
Q Consensus 297 SIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Yr~eGlp~~~~~k-p~ 375 (501)
||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++||+++.|++||++|+++|||+|++.| |+
T Consensus 156 SIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~k~~l 235 (305)
T PF04765_consen 156 SIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPAKLPL 235 (305)
T ss_pred EEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997666 88
Q ss_pred CCCCCcceEEEccCCcchhhhHHHHHHHHhccCCCCcccHHHHHHHhcCcceecccccccccCceeEecc
Q 010800 376 VSDVPEGAVIIREHTALSNLFSCLWFNEVNLLTPRDQLSFGYVVYRLKGLFKFYMFPNCEYNSLFVLHPH 445 (501)
Q Consensus 376 ~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfT~RDQLSF~YVl~Klg~~~~~~MF~~c~rn~~f~~~~H 445 (501)
.+|||||+||||+|+|++|+|||+|||||++||+||||||+||+||++.++++|||+||+|+++++.++|
T Consensus 236 ~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 236 PSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGPKFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCCcccchhhhHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=92.66 E-value=0.24 Score=47.88 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred ccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH
Q 010800 282 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 361 (501)
Q Consensus 282 ipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Y 361 (501)
+.|++...+||+++.-||+|+-+.+.+|+..|.+.-+ ++..+|+..|..... +.. . +
T Consensus 84 y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~--~~~~~aa~~d~~~~~---~~~----~-~------------- 140 (248)
T cd04194 84 YYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDL--GDNLLAAVRDPFIEQ---EKK----R-K------------- 140 (248)
T ss_pred HHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCc--CCCEEEEEecccHHH---HHH----H-H-------------
Confidence 3478999999999999999999999999999887544 567788877643111 000 0 0
Q ss_pred HHcCCCCcccCCCCCCCCCcceEEEccCC-----cchhhhHHHHHHHHh-ccCCCCcccHHHHHHHh
Q 010800 362 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVYRL 422 (501)
Q Consensus 362 r~eGlp~~~~~kp~~sgLpE~~VIIR~Ht-----p~snlFmclWFnEv~-rfT~RDQLSF~YVl~Kl 422 (501)
...+.++ ..+.+-++|++=+-. ...+.+. .|..+.. ++.-.||-.++.+.+..
T Consensus 141 ~~~~~~~-------~~~yfNsGv~l~nl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 141 RRLGGYD-------DGSYFNSGVLLINLKKWREENITEKLL-ELIKEYGGRLIYPDQDILNAVLKDK 199 (248)
T ss_pred hhcCCCc-------ccceeeecchheeHHHHHHhhhHHHHH-HHHHhCCCceeeCChHHHHHHHhCC
Confidence 1122221 234566788774322 1223332 3334332 36679999999998874
No 3
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=87.85 E-value=2.9 Score=40.72 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=94.6
Q ss_pred eeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCC------CccccCCccccccccCCCCCCEEEEEec
Q 010800 229 LFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYD------EPRRNGKVPKILTHRLFPQAQYSIWIDG 302 (501)
Q Consensus 229 ~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~lpy~------D~rrngRipKiLpHrLFPny~YSIWIDg 302 (501)
.+.|+.++|+.+....+.-..+. .. .....+++.++...+. ......-+.|++..++||+++--||+|+
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~-~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~ 104 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLR-KL----YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDA 104 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHH-hc----cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcC
Confidence 57788888876654333211110 00 0113455555422221 2233444789999999999999999999
Q ss_pred ceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-HHcCCCCcccCCCCCCCCCc
Q 010800 303 KMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY-RYEGMEPWSIKKNTVSDVPE 381 (501)
Q Consensus 303 kIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Y-r~eGlp~~~~~kp~~sgLpE 381 (501)
-+.+..|+.+|.+--+ ++..+|+..-..- . ... +.| +..|++. ....+-
T Consensus 105 D~iv~~di~~L~~~~l--~~~~~aav~d~~~--~--------~~~-----------~~~~~~~~~~~-------~~~yfN 154 (246)
T cd00505 105 DILVLTDIDELWDTPL--GGQELAAAPDPGD--R--------REG-----------KYYRQKRSHLA-------GPDYFN 154 (246)
T ss_pred CeeeccCHHHHhhccC--CCCeEEEccCchh--h--------hcc-----------chhhcccCCCC-------CCCcee
Confidence 9999999999998666 5667887754210 0 000 111 1233331 123566
Q ss_pred ceEEEccCCc-----chhhhHHHHHHHHhccCCCCcccHHHHHHHhc
Q 010800 382 GAVIIREHTA-----LSNLFSCLWFNEVNLLTPRDQLSFGYVVYRLK 423 (501)
Q Consensus 382 ~~VIIR~Htp-----~snlFmclWFnEv~rfT~RDQLSF~YVl~Klg 423 (501)
++|++=+-.. +.......|.+...+..--||=.++.+....+
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~ 201 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP 201 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC
Confidence 7888844332 22222334555556788899999999887764
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=87.35 E-value=1.1 Score=41.90 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=36.4
Q ss_pred CccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 010800 281 KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 330 (501)
Q Consensus 281 RipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~H 330 (501)
-+.|++.+.+||+|+--||+|+-+.+.+|+..|.+.-+ ++..+|+...
T Consensus 86 ~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~ 133 (250)
T PF01501_consen 86 TFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED 133 (250)
T ss_dssp GGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-
T ss_pred HHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc
Confidence 35689999999999999999999999999999998666 4666777766
No 5
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=65.37 E-value=16 Score=34.49 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=62.8
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccC
Q 010800 293 QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIK 372 (501)
Q Consensus 293 ny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Yr~eGlp~~~~~ 372 (501)
+++ -+++|+-+.+..||..+++ ..+.++.++.-...... .+.
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~----~~~~Di~~~~d~~~~~~-----------------------~~~---------- 107 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFE----NPDADILFSSDGWDGTN-----------------------SDR---------- 107 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhc----cCCCceEEecCCCcccc-----------------------hhh----------
Confidence 444 5689999999999998881 14667776652111100 000
Q ss_pred CCCCCCCCcceEEEccCCcchhhhHHHHHHHHhccCC-CCcccHHHHHHHhc
Q 010800 373 KNTVSDVPEGAVIIREHTALSNLFSCLWFNEVNLLTP-RDQLSFGYVVYRLK 423 (501)
Q Consensus 373 kp~~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfT~-RDQLSF~YVl~Klg 423 (501)
....+-++++.=+.|+.+..|+..|-....+.+. .||-.|+.++....
T Consensus 108 ---~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 ---NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ---cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 0112246777777799998888999999999955 79999999999964
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=61.26 E-value=13 Score=37.64 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=62.4
Q ss_pred ceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCC-----c---------------cccCC-----c
Q 010800 228 KLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDE-----P---------------RRNGK-----V 282 (501)
Q Consensus 228 d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~lpy~D-----~---------------rrngR-----i 282 (501)
..++|..|+|..+...++.-.... . ...-..+++.+++..+.+ + .+... +
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~--~---~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y 102 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN--P---LKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNF 102 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc--C---CCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHH
Confidence 478899999988877766522110 0 011246666665322211 1 11111 4
Q ss_pred cccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 010800 283 PKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 330 (501)
Q Consensus 283 pKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~H 330 (501)
.+++.-.+||+++--||+|+-+.+.+|..+|.+.=+ ++..+|+...
T Consensus 103 ~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 103 ARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 466677889999999999999999999999998655 4667777655
No 7
>PLN02718 Probable galacturonosyltransferase
Probab=53.79 E-value=29 Score=39.69 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=69.2
Q ss_pred cCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCC---C--CC
Q 010800 200 KCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHP---P--YD 274 (501)
Q Consensus 200 ~criVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~l---p--y~ 274 (501)
.|.|+|.|.|-..- ....++|..|+|..+...++.=.... . . ....+.|+.+++. | |.
T Consensus 325 aasVvInSil~Ns~------------np~~ivFHVvTD~is~~~mk~wf~l~-~-~---~~a~I~V~~Iddf~~lp~~~~ 387 (603)
T PLN02718 325 ACSVVVNSTISSSK------------EPEKIVFHVVTDSLNYPAISMWFLLN-P-P---GKATIQILNIDDMNVLPADYN 387 (603)
T ss_pred eEEEEhhhhhhccC------------CCCcEEEEEEeCCCCHHHHHHHHHhC-C-C---CCcEEEEEecchhccccccch
Confidence 46677766654211 11368999999998887776321111 0 0 1235667777632 1 11
Q ss_pred C-----ccccCC------ccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 010800 275 E-----PRRNGK------VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 330 (501)
Q Consensus 275 D-----~rrngR------ipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~H 330 (501)
+ +..+.+ +.+++...+||+.+--||+|+-+.+.+|...|.+-=+ ++..+|+...
T Consensus 388 ~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 388 SLLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred hhhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 1 011111 2355666789999999999999999999999887544 4566777643
No 8
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=44.91 E-value=32 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=36.7
Q ss_pred cccccCCC-CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 010800 285 ILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 330 (501)
Q Consensus 285 iLpHrLFP-ny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~H 330 (501)
+++..+|| +++--||+|+-+-.++|..+|.+-=+ ++.-+|+..|
T Consensus 86 L~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 86 LFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred HHHHHhhhhccCEEEEEcCCceecccHHHHHhcCc--CCCeEEEeec
Confidence 66777898 69999999999999999999887655 5677888776
No 9
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=41.48 E-value=1.2e+02 Score=29.86 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.3
Q ss_pred eEEEEcCCCCCC-------CccccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHHH
Q 010800 263 WRLILLKHPPYD-------EPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILER 316 (501)
Q Consensus 263 WrIV~V~~lpy~-------D~rrngRipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~ 316 (501)
++++.|+.+... +.+-.+-+.|+..-.+ ++++--||+|+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 567776643221 2234445778777775 5899999999999999998888764
No 10
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=39.02 E-value=32 Score=35.57 Aligned_cols=46 Identities=13% Similarity=0.353 Sum_probs=37.2
Q ss_pred cccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCC
Q 010800 285 ILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHH 333 (501)
Q Consensus 285 iLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R 333 (501)
+|.|-|=|..++.+|+|+-|. .-|-.||+++.. .+.++-+++=..|
T Consensus 134 LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 677888899999999999887 788899999984 6677876654444
No 11
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=38.16 E-value=34 Score=34.92 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=61.0
Q ss_pred ceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCC--CCC---CccccCCc--cccccccCCC-CCCEEEE
Q 010800 228 KLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHP--PYD---EPRRNGKV--PKILTHRLFP-QAQYSIW 299 (501)
Q Consensus 228 d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~l--py~---D~rrngRi--pKiLpHrLFP-ny~YSIW 299 (501)
..++|..++|+.+.+.++.-.... . .....+.++.++.. ++. .....+.+ .+++.+.+|| +++--||
T Consensus 29 ~~~~fhii~d~~s~~~~~~l~~~~-~----~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLY 103 (280)
T cd06431 29 NPLHFHLITDEIARRILATLFQTW-M----VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIV 103 (280)
T ss_pred CCEEEEEEECCcCHHHHHHHHHhc-c----ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEE
Confidence 458999999987766544321110 0 01124566666421 111 11222221 4888999999 6999999
Q ss_pred EecceEEeeCHHHHHHHHH-hcCCCeEEEecC
Q 010800 300 IDGKMELIVDPLLILERYL-WRGKHTFAIAQH 330 (501)
Q Consensus 300 IDgkIqL~~DP~~LLe~~L-wr~~~~~Ais~H 330 (501)
+|+-+.+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 104 LD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 104 LDTDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred EcCCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 9999999999999998641 224456666654
No 12
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=35.95 E-value=26 Score=34.92 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCCccccCCcccc--ccccC--CCCCCEEEEEecceEEeeCHHHHHHHHH
Q 010800 264 RLILLKHPPYDEPRRNGKVPKI--LTHRL--FPQAQYSIWIDGKMELIVDPLLILERYL 318 (501)
Q Consensus 264 rIV~V~~lpy~D~rrngRipKi--LpHrL--FPny~YSIWIDgkIqL~~DP~~LLe~~L 318 (501)
.++.+....+.++-+.+-+-|+ +-|.+ ||++++-+|+|+..-|+.-=..|-+.+|
T Consensus 43 ~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il 101 (239)
T PF05637_consen 43 DLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHIL 101 (239)
T ss_dssp EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE------------
T ss_pred EEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecccccccccc
Confidence 4444333335444444446674 43334 6999999999999888543333333443
No 13
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=31.12 E-value=39 Score=34.19 Aligned_cols=51 Identities=14% Similarity=0.320 Sum_probs=39.0
Q ss_pred cccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHH
Q 010800 287 THRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADAN 343 (501)
Q Consensus 287 pHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac 343 (501)
.+.++|++++-+++||-|-+ ++|...||.|+ .++.++-.+.-.. =-|+.|.
T Consensus 35 va~~L~~~~~vlflDaDigV-vNp~~~iEefi-d~~~Di~fydR~~----n~Ei~ag 85 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGV-VNPNRRIEEFI-DEGYDIIFYDRFF----NWEIAAG 85 (222)
T ss_pred HHHHhccCCEEEEEcCCcee-ecCcccHHHhc-CCCCcEEEEeccc----chhhhhc
Confidence 45678999999999999977 79999999999 5777777764332 2455553
No 14
>PLN02742 Probable galacturonosyltransferase
Probab=29.58 E-value=98 Score=35.12 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=69.5
Q ss_pred CEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCC----c-
Q 010800 202 KFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDE----P- 276 (501)
Q Consensus 202 riVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~lpy~D----~- 276 (501)
+.||.|=-.++-=....-.-.+...-..+-|-.+||..+...|+.=-..- + ..--.|.|..+++..... |
T Consensus 229 Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n-~----~~~a~v~V~n~e~f~wl~~~~~pv 303 (534)
T PLN02742 229 HFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMN-D----FKGVTVEVQKIEEFSWLNASYVPV 303 (534)
T ss_pred eEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhC-C----CCccEEEEEEeccccccccccchH
Confidence 46666543333222222221222222558899999999988887522110 1 112467777776521110 0
Q ss_pred --------------------------cccCCcc------ccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCe
Q 010800 277 --------------------------RRNGKVP------KILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHT 324 (501)
Q Consensus 277 --------------------------rrngRip------KiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~ 324 (501)
.|+-++. +++.-++||+.+--||+|+-+.+.+|..+|.+-=| ++.-
T Consensus 304 l~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~v 381 (534)
T PLN02742 304 LKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNV 381 (534)
T ss_pred HHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCE
Confidence 1111121 22333689999999999999999999999887545 4666
Q ss_pred EEEec
Q 010800 325 FAIAQ 329 (501)
Q Consensus 325 ~Ais~ 329 (501)
+|+..
T Consensus 382 iaAVe 386 (534)
T PLN02742 382 NGAVE 386 (534)
T ss_pred EEEeC
Confidence 77763
No 15
>PLN00176 galactinol synthase
Probab=26.69 E-value=1.2e+02 Score=32.14 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=61.8
Q ss_pred hhcCCEEEEEeeecCCCCCCCCC-------CCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCC
Q 010800 198 VKKCKFVVASGIFDGYDVPHQPS-------NISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKH 270 (501)
Q Consensus 198 m~~criVVyTAIFG~YD~L~~P~-------~is~~s~d~VCF~mF~De~Tl~~l~~~~~v~~D~~~~~~vG~WrIV~V~~ 270 (501)
++..+-|-+|.+.+|.|-+..-. ..+. ..+.||++ ++|++....+. + ..-.|.|+.|+.
T Consensus 18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s-~~~lVvlV--t~dVp~e~r~~---L--------~~~g~~V~~V~~ 83 (333)
T PLN00176 18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKS-AYPLVVAV--LPDVPEEHRRI---L--------VSQGCIVREIEP 83 (333)
T ss_pred cccCceEEEEEEecCcchHHHHHHHHHHHHHhCC-CCCEEEEE--CCCCCHHHHHH---H--------HHcCCEEEEecc
Confidence 33447788888888877654321 1222 24778876 67776533221 1 011356776664
Q ss_pred C-CCCCc-cccC-----CccccccccCCCCCCEEEEEecceEEeeCHHHHHHH
Q 010800 271 P-PYDEP-RRNG-----KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILER 316 (501)
Q Consensus 271 l-py~D~-rrng-----RipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~ 316 (501)
+ |-... .... -+.|++.-.| .+|+--||+|+-+.+..+..+|.+.
T Consensus 84 i~~~~~~~~~~~~~~~i~~tKl~iw~l-~~ydkvlyLDaD~lv~~nid~Lf~~ 135 (333)
T PLN00176 84 VYPPENQTQFAMAYYVINYSKLRIWEF-VEYSKMIYLDGDIQVFENIDHLFDL 135 (333)
T ss_pred cCCcccccccccchhhhhhhhhhhccc-cccceEEEecCCEEeecChHHHhcC
Confidence 3 11111 1000 1456666554 5899999999999999999988864
No 16
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.39 E-value=1.6e+02 Score=33.43 Aligned_cols=52 Identities=21% Similarity=0.437 Sum_probs=34.6
Q ss_pred eeeccceeeeehHHHHHHHHHHHHHHHHhhccCcchHHHHHHhhccCcEEEeecccCCCCCC
Q 010800 47 VWKRGFIRLVLVAGIAWMLLILVVLLFHVWSCQSSLAFFSAICNKQGKVFIMLDTMGLVPKS 108 (501)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (501)
-|-++.+|++++.+-+-+++++++ -+|.|.-. +....|.|.+|+-.|-+-++
T Consensus 394 ~~~~~~l~~~~~~~~~~~~~~~~l---~vw~c~~~-------r~~~~~~y~ilnpf~~vyts 445 (542)
T PHA03283 394 AWTRHYLAFLLAIICTCAALLVAL---VVWGCILY-------RRSNRKPYEVLNPFETVYTS 445 (542)
T ss_pred ccccccchhHHHHHHHHHHHHHHH---hhhheeee-------hhhcCCcccccCCCccceec
Confidence 578888877766665555443333 38988643 55678899999876655543
No 17
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.04 E-value=98 Score=29.51 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=36.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccCCCCCCCCCcceEEEcc-CC
Q 010800 322 KHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIKKNTVSDVPEGAVIIRE-HT 390 (501)
Q Consensus 322 ~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Yr~eGlp~~~~~kp~~sgLpE~~VIIR~-Ht 390 (501)
+-.++-+.-|+|..+= .|=|-+.+.|++|+-.+-+-|++| +.-+||+|+ |.
T Consensus 8 GKGis~SAlPY~r~~P-------tWlK~~~ddvkeqI~K~akKGltp-----------sqIGviLRDshG 59 (151)
T KOG0400|consen 8 GKGISGSALPYRRSVP-------TWLKLTADDVKEQIYKLAKKGLTP-----------SQIGVILRDSHG 59 (151)
T ss_pred CcccccCccccccCCc-------HHHhcCHHHHHHHHHHHHHcCCCh-----------hHceeeeecccC
Confidence 3346666677776531 233567899999999999999996 346899988 44
Done!