Query 010800
Match_columns 501
No_of_seqs 120 out of 137
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 79.6 1.3 4.3E-05 42.9 3.8 49 282-332 88-137 (276)
2 1g9r_A Glycosyl transferase; a 53.0 4.9 0.00017 39.1 1.7 108 282-420 84-197 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 29.0 48 0.0016 32.1 4.3 52 263-315 57-117 (263)
4 1ll2_A Glycogenin-1; protein-s 23.9 39 0.0013 33.5 2.7 51 264-315 57-116 (333)
5 2dha_A FLJ20171 protein; RRM d 17.0 56 0.0019 27.9 1.9 86 152-248 2-89 (123)
6 2fc9_A NCL protein; structure 13.0 1.9E+02 0.0064 22.4 3.9 52 178-242 15-67 (101)
7 1o7q_A N-acetyllactosaminide a 9.6 33 0.0011 34.5 -2.1 111 186-310 32-155 (289)
8 2mss_A Protein (musashi1); RNA 9.5 4E+02 0.014 19.2 4.5 52 182-242 3-55 (75)
9 1x4c_A Splicing factor, argini 9.4 4.8E+02 0.016 20.5 5.2 51 179-245 16-68 (108)
10 2hgm_A HNRPF protein, heteroge 9.1 6.6E+02 0.022 21.3 6.3 60 178-246 42-103 (126)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=79.55 E-value=1.3 Score=42.91 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred ccccccccCCC-CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCC
Q 010800 282 VPKILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKH 332 (501)
Q Consensus 282 ipKiLpHrLFP-ny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~ 332 (501)
+.|++...+|| +++--||+|+-+.+..|+.+|.+--+ ++..+|+..+..
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~~ 137 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHTG 137 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC--
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEecc
Confidence 56888899999 69999999999999999999887433 456788887643
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=52.98 E-value=4.9 Score=39.07 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=67.7
Q ss_pred ccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH
Q 010800 282 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 361 (501)
Q Consensus 282 ipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe~~Lwr~~~~~Ais~Hp~R~cVYEEAeac~~~~K~~~~~I~~Qm~~Y 361 (501)
+.|++...+||+++--||+|+-+.+.+|+.+|.+.-+ ++..+|+..+ | +.+ .. . ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~---~-------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQ---E-------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TS---T-------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hh---H-------HHH
Confidence 5577778889999999999999999999999887433 4566777654 2 221 00 0 112
Q ss_pred HHcCCCCcccCCCCCCCCCcceEEEccCC-----cchhhhHHHHHHHHh-ccCCCCcccHHHHHH
Q 010800 362 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVY 420 (501)
Q Consensus 362 r~eGlp~~~~~kp~~sgLpE~~VIIR~Ht-----p~snlFmclWFnEv~-rfT~RDQLSF~YVl~ 420 (501)
..-|+++ ....+-+||++=+-. ...+.+. .|.++.. ++.--||=-++.+..
T Consensus 141 ~~~~~~~-------~~~yfNsGv~linl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD-------GEYYFNAGVLLINLKKWRRHDIFKMSS-EWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT-------TSCCEEEEEEEECHHHHTTSCHHHHHH-HHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC-------CCceEeeeeeeeeHHHHHhcchHHHHH-HHHHhccCcCccCCcCHHHHHHc
Confidence 3456653 234677888874422 2223332 3444432 345579988887765
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=28.97 E-value=48 Score=32.12 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCC---------CccccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHH
Q 010800 263 WRLILLKHPPYD---------EPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 315 (501)
Q Consensus 263 WrIV~V~~lpy~---------D~rrngRipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe 315 (501)
.+++.|+.+... .++...-+.|++..++. +|+--||+|+-+.+..|+.+|.+
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 467887754322 23334457799888875 69999999999999999776654
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=23.93 E-value=39 Score=33.53 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.9
Q ss_pred EEEEcCCCCCCCc---------cccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHH
Q 010800 264 RLILLKHPPYDEP---------RRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 315 (501)
Q Consensus 264 rIV~V~~lpy~D~---------rrngRipKiLpHrLFPny~YSIWIDgkIqL~~DP~~LLe 315 (501)
+|+.|+.++..++ +...-+.|++...| ++|+--||+|+-+.+..|+..|.+
T Consensus 57 ~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 57 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp EEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred EEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 6777775433221 11223678888875 999999999999999999877764
No 5
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.03 E-value=56 Score=27.85 Aligned_cols=86 Identities=14% Similarity=-0.044 Sum_probs=46.9
Q ss_pred CCCCCCCCCCChhhhhhccCCCCceeeccccccCCCCCCChhcHHH-hhcCCEEEEEeeecCCCCCCCCCCCCccCccee
Q 010800 152 QSSPLFGGHQSWLQREESFKLNSNMKVHCGFMRNGGAEMSPLDVKY-VKKCKFVVASGIFDGYDVPHQPSNISRRSKKLF 230 (501)
Q Consensus 152 ~~~~~FgG~~s~~~R~~sf~~~~~~~vhCGF~~~~gfdi~e~d~~~-m~~criVVyTAIFG~YD~L~~P~~is~~s~d~V 230 (501)
..++.+||.....+|.-. ...-.+=|+.|=+++.++.|+.. .+++..|+ |.-+.++-+..-+- ....+
T Consensus 2 ~~g~~~~g~~~~~~~~~~-----~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~-----g~v~~v~i~~d~~g-r~~G~ 70 (123)
T 2dha_A 2 SSGSSGGGTSNEVAQFLS-----KENQVIVRMRGLPFTATAEEVVAFFGQHCPIT-----GGKEGILFVTYPDG-RPTGD 70 (123)
T ss_dssp CCCSSSCCCCHHHHHHHH-----CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCT-----TGGGGEEEEECTTS-CEEEE
T ss_pred CCCCCCCCCchhHHhhcc-----CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCcc-----CCcceEEEEECCCC-CEeeE
Confidence 467889997775555432 22234557888889999999776 45543210 00011111111011 12679
Q ss_pred EEEEEeehhhH-HHHhhcc
Q 010800 231 CFLMVMDEVSL-KFIRKNV 248 (501)
Q Consensus 231 CF~mF~De~Tl-~~l~~~~ 248 (501)
||+-|.++... ++|+.++
T Consensus 71 aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 71 AFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp EEECCSSHHHHHHHHTTTT
T ss_pred EEEEECCHHHHHHHHHhCC
Confidence 99999776543 4444443
No 6
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.05 E-value=1.9e+02 Score=22.45 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=31.5
Q ss_pred eccccccCCCCCCChhcHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHH
Q 010800 178 VHCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 242 (501)
Q Consensus 178 vhCGF~~~~gfdi~e~d~~~m-~~criVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl~ 242 (501)
-.+=|+.|-+.++++.|+..+ +++. .++-+..-. .....+||+-|.|....+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g------------~v~~~~~~~-g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKAT------------FIKVPQNQN-GKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCS------------EEECCBCSS-SCBCSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC------------EEEEEECCC-CCEeeEEEEEECCHHHHH
Confidence 455677787888999988764 3332 222222211 123679999998866543
No 7
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=9.58 E-value=33 Score=34.54 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCCCCChhcHHHhhcC-CEEEEEeeecCCC-CCCCC----C---CCCccCcceeEEEEEeehhhHHHHhhcccccc-CCC
Q 010800 186 GGAEMSPLDVKYVKKC-KFVVASGIFDGYD-VPHQP----S---NISRRSKKLFCFLMVMDEVSLKFIRKNVTIKE-DSA 255 (501)
Q Consensus 186 ~gfdi~e~d~~~m~~c-riVVyTAIFG~YD-~L~~P----~---~is~~s~d~VCF~mF~De~Tl~~l~~~~~v~~-D~~ 255 (501)
+-|+.+=-+..|.+.+ +|.+.--.+|.|- ...+. . .+-. -.|-|+.|||+. ..+|. +..
T Consensus 32 gtf~~~~l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g---~~v~YYVFTD~~--------~~~p~v~l~ 100 (289)
T 1o7q_A 32 GTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVG---HPVIFYIMVDDV--------SRMPLIELG 100 (289)
T ss_dssp TSBCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTT---SCEEEEEEESCG--------GGCCCCCCC
T ss_pred CcCCHHHHHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccCC---CeEEEEEEeCCh--------hhCCccccC
Confidence 4466655566666666 7777777788885 22111 0 1221 357899999943 23332 111
Q ss_pred CCceeeceEEEEcCCC---CCCCccccCCccccccccCCCCCCEEEEEecceEEeeCH
Q 010800 256 GGQWVGIWRLILLKHP---PYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDP 310 (501)
Q Consensus 256 ~~~~vG~WrIV~V~~l---py~D~rrngRipKiLpHrLFPny~YSIWIDgkIqL~~DP 310 (501)
.. -.=+|+.|... |+...+|..-+-+...-+++-++||-+.+|+++.+..+.
T Consensus 101 ~~---r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~v 155 (289)
T 1o7q_A 101 PL---RSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKF 155 (289)
T ss_dssp TT---EEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCB
T ss_pred CC---CeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccC
Confidence 11 11244555432 222344444344444456789999999999999998764
No 8
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=9.46 E-value=4e+02 Score=19.21 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=28.1
Q ss_pred cccCCCCCCChhcHHH-hhcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHH
Q 010800 182 FMRNGGAEMSPLDVKY-VKKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 242 (501)
Q Consensus 182 F~~~~gfdi~e~d~~~-m~~criVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl~ 242 (501)
|+.|-+.++++.|+.. .+++.- -..+.-+..-.......+||+-|.|....+
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G~---------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFGK---------VDDAMLMFDKTTNRHRGFGFVTFESEDIVE 55 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSC---------CSEECCCBCSSSTTSCBEEEEECSCHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhcCC---------EEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 4566667888888765 344422 112222221111123679999998876543
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=9.42 E-value=4.8e+02 Score=20.55 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=33.2
Q ss_pred ccccccCCCCCCChhcHHH-hhcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhH-HHHh
Q 010800 179 HCGFMRNGGAEMSPLDVKY-VKKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIR 245 (501)
Q Consensus 179 hCGF~~~~gfdi~e~d~~~-m~~criVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl-~~l~ 245 (501)
.+-||.|-+.++++.|+.. .+++.-|+..-|.-+ .+||+-|.|.... ++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------------TEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------------CEEEEEECCHHHHHHHHH
Confidence 3457888888999998876 456654444444321 5789999886544 3444
No 10
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=9.08 E-value=6.6e+02 Score=21.27 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=36.8
Q ss_pred eccccccCCCCCCChhcHHH-hhcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhH-HHHhh
Q 010800 178 VHCGFMRNGGAEMSPLDVKY-VKKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIRK 246 (501)
Q Consensus 178 vhCGF~~~~gfdi~e~d~~~-m~~criVVyTAIFG~YD~L~~P~~is~~s~d~VCF~mF~De~Tl-~~l~~ 246 (501)
-.+=|+.|=+++++|.|+.. .++|.|+...+.+ +..+.+- .+.++|+-|.++... ++++.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i-----~~d~~Gr----srGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL-----PVDPEGK----ITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEEC-----CCCSSSS----SCSEEEEEESSTTHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEE-----EECCCCC----CceEEEEEECCHHHHHHHHHH
Confidence 34567889899999999765 6778655223322 1122221 267899999776544 44444
Done!