Query 010801
Match_columns 501
No_of_seqs 490 out of 2425
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 04:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.3E-53 5E-58 362.4 28.2 321 29-500 112-479 (480)
2 KOG1354 Serine/threonine prote 100.0 3.8E-50 8.2E-55 338.4 24.0 426 9-501 7-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-46 6.7E-51 323.0 21.0 285 27-461 170-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 8.7E-46 1.9E-50 316.1 23.4 285 29-461 154-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 9.8E-43 2.1E-47 301.3 23.7 276 114-501 176-459 (459)
6 KOG0279 G protein beta subunit 100.0 1.2E-38 2.6E-43 261.8 31.2 296 28-500 11-311 (315)
7 COG5170 CDC55 Serine/threonine 100.0 9.2E-41 2E-45 278.4 17.8 441 13-501 7-459 (460)
8 KOG0318 WD40 repeat stress pro 100.0 6.4E-38 1.4E-42 278.7 36.5 374 10-501 176-559 (603)
9 KOG0319 WD40-repeat-containing 100.0 2.2E-38 4.8E-43 292.6 28.7 393 30-499 103-616 (775)
10 KOG0315 G-protein beta subunit 100.0 5.6E-38 1.2E-42 253.5 26.9 290 44-482 10-309 (311)
11 KOG0286 G-protein beta subunit 100.0 2E-37 4.4E-42 256.1 30.2 288 28-460 51-342 (343)
12 KOG0286 G-protein beta subunit 100.0 8.5E-37 1.8E-41 252.4 29.0 289 90-500 44-343 (343)
13 KOG0284 Polyadenylation factor 100.0 1.7E-38 3.7E-43 273.8 16.9 280 32-462 96-379 (464)
14 KOG0291 WD40-repeat-containing 100.0 1.8E-35 3.9E-40 273.8 37.6 379 29-501 142-549 (893)
15 KOG0279 G protein beta subunit 100.0 1.1E-36 2.4E-41 250.2 25.4 250 30-414 61-313 (315)
16 KOG0315 G-protein beta subunit 100.0 2.3E-36 5.1E-41 244.2 26.6 273 27-436 34-309 (311)
17 KOG0263 Transcription initiati 100.0 6E-37 1.3E-41 286.0 25.9 266 32-416 378-651 (707)
18 KOG0295 WD40 repeat-containing 100.0 1.7E-36 3.7E-41 257.9 23.8 281 29-460 105-403 (406)
19 KOG0306 WD40-repeat-containing 100.0 1.1E-35 2.4E-40 275.0 31.2 263 193-500 393-662 (888)
20 KOG0291 WD40-repeat-containing 100.0 8.3E-35 1.8E-39 269.5 36.7 374 30-500 94-506 (893)
21 KOG0273 Beta-transducin family 100.0 1.2E-35 2.5E-40 261.0 29.3 332 28-499 174-520 (524)
22 KOG0265 U5 snRNP-specific prot 100.0 1.1E-35 2.3E-40 246.9 27.3 283 30-498 45-334 (338)
23 KOG0273 Beta-transducin family 100.0 1E-35 2.3E-40 261.2 28.3 281 30-414 233-523 (524)
24 KOG0285 Pleiotropic regulator 100.0 8.4E-36 1.8E-40 253.0 25.1 301 10-467 133-443 (460)
25 KOG0293 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 257.4 24.1 287 30-463 222-513 (519)
26 KOG0284 Polyadenylation factor 100.0 7.9E-37 1.7E-41 263.6 16.7 275 113-500 96-378 (464)
27 KOG0316 Conserved WD40 repeat- 100.0 4.4E-35 9.4E-40 234.9 24.3 280 30-500 15-297 (307)
28 KOG0319 WD40-repeat-containing 100.0 1.2E-34 2.6E-39 268.0 29.4 376 29-501 59-576 (775)
29 KOG0318 WD40 repeat stress pro 100.0 3.9E-33 8.5E-38 248.4 36.2 366 30-500 57-515 (603)
30 KOG0276 Vesicle coat complex C 100.0 2.1E-34 4.5E-39 261.4 27.3 267 29-438 10-280 (794)
31 KOG0296 Angio-associated migra 100.0 1.7E-33 3.6E-38 239.9 29.5 332 27-500 59-396 (399)
32 KOG0645 WD40 repeat protein [G 100.0 3.2E-33 6.9E-38 228.9 29.4 289 29-462 11-310 (312)
33 KOG0266 WD40 repeat-containing 100.0 9.1E-34 2E-38 272.3 30.7 287 31-462 158-453 (456)
34 KOG0645 WD40 repeat protein [G 100.0 1.2E-32 2.6E-37 225.6 31.9 286 93-500 6-309 (312)
35 KOG0282 mRNA splicing factor [ 100.0 1.6E-34 3.5E-39 254.8 17.9 287 27-460 209-502 (503)
36 KOG0263 Transcription initiati 100.0 1.5E-33 3.3E-38 263.3 24.6 271 114-466 379-652 (707)
37 KOG0306 WD40-repeat-containing 100.0 2.4E-32 5.2E-37 253.1 32.3 363 32-500 65-578 (888)
38 PLN00181 protein SPA1-RELATED; 100.0 1.1E-31 2.3E-36 277.5 40.5 302 28-500 479-791 (793)
39 cd00200 WD40 WD40 domain, foun 100.0 7.7E-32 1.7E-36 247.1 34.3 279 30-460 7-288 (289)
40 KOG0313 Microtubule binding pr 100.0 7.8E-33 1.7E-37 237.0 24.7 305 16-462 89-417 (423)
41 KOG0266 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 260.0 31.6 281 114-500 160-452 (456)
42 KOG0295 WD40 repeat-containing 100.0 7.7E-33 1.7E-37 235.7 21.4 275 114-500 109-404 (406)
43 KOG0283 WD40 repeat-containing 100.0 1.6E-32 3.4E-37 258.7 25.3 276 30-415 265-577 (712)
44 KOG0772 Uncharacterized conser 100.0 1.9E-32 4.1E-37 243.4 23.5 309 30-500 165-485 (641)
45 KOG0281 Beta-TrCP (transducin 100.0 2.1E-33 4.6E-38 237.7 16.7 233 31-416 196-430 (499)
46 KOG0292 Vesicle coat complex C 100.0 7.2E-32 1.6E-36 254.1 28.6 296 32-463 9-321 (1202)
47 KOG0275 Conserved WD40 repeat- 100.0 4E-33 8.7E-38 234.0 18.1 292 31-461 212-507 (508)
48 KOG0282 mRNA splicing factor [ 100.0 8.3E-33 1.8E-37 244.0 17.9 289 93-500 206-503 (503)
49 cd00200 WD40 WD40 domain, foun 100.0 1.3E-30 2.9E-35 238.9 32.2 281 95-500 3-289 (289)
50 KOG0278 Serine/threonine kinas 100.0 7.7E-33 1.7E-37 224.0 14.8 282 29-463 11-297 (334)
51 KOG1407 WD40 repeat protein [F 100.0 7.5E-31 1.6E-35 213.9 25.3 277 27-494 15-293 (313)
52 KOG0640 mRNA cleavage stimulat 100.0 2.5E-31 5.3E-36 221.9 22.1 309 30-460 110-423 (430)
53 KOG0293 WD40 repeat-containing 100.0 2.9E-31 6.2E-36 229.6 20.6 287 93-500 216-511 (519)
54 KOG0276 Vesicle coat complex C 100.0 8.9E-31 1.9E-35 238.0 23.8 275 114-500 14-296 (794)
55 KOG1446 Histone H3 (Lys4) meth 100.0 3E-29 6.4E-34 210.8 30.9 268 32-438 14-286 (311)
56 KOG0643 Translation initiation 100.0 3.5E-30 7.7E-35 210.7 24.6 294 26-416 4-319 (327)
57 KOG0265 U5 snRNP-specific prot 100.0 2.9E-30 6.2E-35 214.7 24.4 253 91-501 37-295 (338)
58 KOG0296 Angio-associated migra 100.0 3.1E-30 6.6E-35 220.1 24.9 299 14-460 91-395 (399)
59 KOG0277 Peroxisomal targeting 100.0 1.3E-30 2.8E-35 211.7 20.2 241 114-461 61-307 (311)
60 KOG0310 Conserved WD40 repeat- 100.0 4.4E-30 9.5E-35 227.3 25.2 277 31-498 25-304 (487)
61 PTZ00421 coronin; Provisional 100.0 5.6E-29 1.2E-33 237.9 32.1 301 15-438 5-314 (493)
62 KOG0285 Pleiotropic regulator 100.0 4E-30 8.7E-35 218.7 20.0 288 86-500 136-437 (460)
63 KOG0313 Microtubule binding pr 100.0 2.6E-29 5.6E-34 215.4 23.8 299 106-500 98-416 (423)
64 KOG0973 Histone transcription 100.0 6.3E-29 1.4E-33 240.6 27.7 318 28-499 8-352 (942)
65 KOG0643 Translation initiation 100.0 2.2E-28 4.9E-33 200.2 26.4 286 96-499 5-314 (327)
66 KOG0277 Peroxisomal targeting 100.0 7.1E-30 1.5E-34 207.4 17.4 244 31-413 59-308 (311)
67 KOG0292 Vesicle coat complex C 100.0 2.9E-29 6.3E-34 236.7 23.9 276 114-500 10-319 (1202)
68 KOG1063 RNA polymerase II elon 100.0 2.9E-28 6.3E-33 224.3 27.5 415 29-500 188-697 (764)
69 KOG0641 WD40 repeat protein [G 100.0 4.3E-27 9.3E-32 188.1 30.5 308 29-462 29-348 (350)
70 KOG0299 U3 snoRNP-associated p 100.0 3.4E-28 7.4E-33 213.7 25.9 270 30-416 140-412 (479)
71 KOG0305 Anaphase promoting com 100.0 1.2E-28 2.6E-33 226.7 24.1 240 32-416 217-463 (484)
72 KOG0288 WD40 repeat protein Ti 100.0 1.1E-29 2.4E-34 219.9 16.0 281 30-460 173-458 (459)
73 KOG0316 Conserved WD40 repeat- 100.0 2.1E-28 4.5E-33 196.7 21.1 244 95-463 11-257 (307)
74 KOG0283 WD40 repeat-containing 100.0 9.4E-29 2E-33 233.4 22.2 301 114-463 268-576 (712)
75 KOG0281 Beta-TrCP (transducin 100.0 6.8E-30 1.5E-34 216.5 12.6 263 114-500 198-475 (499)
76 KOG0268 Sof1-like rRNA process 100.0 1.8E-29 3.9E-34 215.1 14.1 291 15-460 49-342 (433)
77 PLN00181 protein SPA1-RELATED; 100.0 2.8E-27 6E-32 244.8 33.4 259 29-413 529-792 (793)
78 KOG0305 Anaphase promoting com 100.0 4E-27 8.7E-32 216.8 26.1 248 32-428 177-432 (484)
79 PTZ00420 coronin; Provisional 100.0 2.5E-26 5.5E-31 220.6 32.7 239 93-438 66-317 (568)
80 KOG1446 Histone H3 (Lys4) meth 100.0 4.5E-26 9.7E-31 191.7 30.0 274 114-499 15-300 (311)
81 KOG0647 mRNA export protein (c 100.0 1.5E-26 3.2E-31 192.9 25.9 274 31-443 26-307 (347)
82 KOG0289 mRNA splicing factor [ 100.0 1.2E-26 2.6E-31 202.4 26.4 244 32-416 219-464 (506)
83 KOG2106 Uncharacterized conser 100.0 1.3E-25 2.7E-30 199.7 31.8 382 24-499 96-518 (626)
84 KOG0300 WD40 repeat-containing 100.0 6.9E-27 1.5E-31 196.1 22.4 321 28-462 144-475 (481)
85 PTZ00421 coronin; Provisional 100.0 7.4E-26 1.6E-30 216.5 32.4 219 28-366 71-299 (493)
86 KOG1036 Mitotic spindle checkp 100.0 6.9E-26 1.5E-30 189.6 27.7 275 32-492 13-293 (323)
87 KOG0640 mRNA cleavage stimulat 100.0 8.7E-27 1.9E-31 194.9 22.3 303 95-500 106-424 (430)
88 KOG0274 Cdc4 and related F-box 100.0 1.1E-26 2.4E-31 222.3 25.7 271 31-463 207-482 (537)
89 KOG2096 WD40 repeat protein [G 100.0 2.9E-26 6.2E-31 192.5 24.8 293 95-499 80-399 (420)
90 KOG0294 WD40 repeat-containing 100.0 1.7E-26 3.7E-31 193.6 23.3 250 13-416 30-283 (362)
91 KOG0264 Nucleosome remodeling 100.0 5.8E-27 1.3E-31 206.1 21.3 265 29-415 121-405 (422)
92 KOG0308 Conserved WD40 repeat- 100.0 2.9E-27 6.2E-32 216.3 19.8 279 29-436 18-306 (735)
93 KOG2106 Uncharacterized conser 100.0 3.1E-25 6.7E-30 197.2 31.3 353 32-500 246-624 (626)
94 KOG1332 Vesicle coat complex C 100.0 7.1E-27 1.5E-31 189.0 18.3 255 29-414 8-286 (299)
95 KOG1063 RNA polymerase II elon 100.0 8.3E-26 1.8E-30 208.3 27.7 406 29-500 51-646 (764)
96 KOG1539 WD repeat protein [Gen 100.0 1.6E-25 3.5E-30 210.6 29.5 375 30-500 200-646 (910)
97 KOG2048 WD40 repeat protein [G 100.0 6.2E-25 1.4E-29 202.2 32.5 325 32-500 25-409 (691)
98 KOG0294 WD40 repeat-containing 100.0 1.6E-25 3.5E-30 187.8 25.9 275 46-463 3-281 (362)
99 KOG1408 WD40 repeat protein [F 99.9 2E-25 4.2E-30 206.4 27.9 362 35-500 327-711 (1080)
100 KOG0278 Serine/threonine kinas 99.9 1.1E-26 2.4E-31 188.5 17.2 281 95-501 8-296 (334)
101 KOG0647 mRNA export protein (c 99.9 1E-25 2.2E-30 187.9 23.3 268 114-492 28-312 (347)
102 KOG0641 WD40 repeat protein [G 99.9 5.2E-25 1.1E-29 176.2 26.4 253 30-414 87-349 (350)
103 KOG0275 Conserved WD40 repeat- 99.9 4.7E-27 1E-31 197.6 15.4 243 31-412 262-507 (508)
104 PTZ00420 coronin; Provisional 99.9 6.9E-25 1.5E-29 210.7 32.4 254 194-486 54-319 (568)
105 KOG0973 Histone transcription 99.9 6.7E-26 1.5E-30 219.7 24.6 270 28-416 65-357 (942)
106 KOG0772 Uncharacterized conser 99.9 2.6E-26 5.6E-31 204.6 19.0 263 32-414 214-487 (641)
107 KOG0310 Conserved WD40 repeat- 99.9 1.2E-25 2.5E-30 199.4 23.0 241 32-416 68-311 (487)
108 KOG0274 Cdc4 and related F-box 99.9 1.8E-25 4E-30 214.0 25.7 252 13-419 232-487 (537)
109 KOG1332 Vesicle coat complex C 99.9 4.3E-26 9.3E-31 184.5 17.8 247 215-500 8-284 (299)
110 KOG0301 Phospholipase A2-activ 99.9 1.5E-25 3.2E-30 206.7 23.5 276 27-462 9-287 (745)
111 KOG0268 Sof1-like rRNA process 99.9 1E-26 2.2E-31 198.4 14.6 279 93-501 58-344 (433)
112 KOG0289 mRNA splicing factor [ 99.9 6.2E-25 1.3E-29 191.8 25.3 243 30-413 259-505 (506)
113 KOG0264 Nucleosome remodeling 99.9 7.3E-26 1.6E-30 199.2 19.5 277 108-500 119-402 (422)
114 KOG2096 WD40 repeat protein [G 99.9 2.6E-25 5.7E-30 186.7 21.9 314 29-413 83-401 (420)
115 KOG4283 Transcription-coupled 99.9 1.1E-24 2.3E-29 181.2 24.6 311 30-462 41-364 (397)
116 KOG1274 WD40 repeat protein [G 99.9 1.7E-24 3.7E-29 206.0 29.1 270 29-438 10-281 (933)
117 KOG1407 WD40 repeat protein [F 99.9 5.1E-25 1.1E-29 180.1 21.5 236 95-455 14-252 (313)
118 KOG0299 U3 snoRNP-associated p 99.9 5.2E-25 1.1E-29 193.9 22.2 248 30-411 200-453 (479)
119 KOG2919 Guanine nucleotide-bin 99.9 1.6E-24 3.5E-29 182.4 24.1 291 33-438 50-351 (406)
120 KOG1273 WD40 repeat protein [G 99.9 1.9E-24 4.1E-29 181.4 23.8 262 30-427 22-292 (405)
121 KOG0288 WD40 repeat protein Ti 99.9 1E-25 2.3E-30 195.5 15.0 272 114-500 176-459 (459)
122 KOG0639 Transducin-like enhanc 99.9 7.7E-25 1.7E-29 194.6 20.5 250 27-416 414-665 (705)
123 KOG0301 Phospholipase A2-activ 99.9 1.8E-24 4E-29 199.6 23.7 281 89-500 2-286 (745)
124 KOG0300 WD40 repeat-containing 99.9 7.7E-25 1.7E-29 183.8 18.9 277 22-416 180-478 (481)
125 KOG0269 WD40 repeat-containing 99.9 3.1E-25 6.8E-30 207.0 16.1 246 34-416 89-342 (839)
126 KOG4328 WD40 protein [Function 99.9 9.9E-24 2.1E-28 185.7 24.3 261 31-416 185-452 (498)
127 KOG0650 WD40 repeat nucleolar 99.9 4.5E-24 9.8E-29 193.7 22.6 334 17-500 385-733 (733)
128 KOG2445 Nuclear pore complex c 99.9 3.3E-23 7.1E-28 173.5 25.5 269 29-414 10-318 (361)
129 KOG2055 WD40 repeat protein [G 99.9 2.3E-23 5E-28 183.5 23.7 295 32-414 213-512 (514)
130 KOG0308 Conserved WD40 repeat- 99.9 2E-24 4.3E-29 197.9 17.1 246 118-457 29-278 (735)
131 KOG1408 WD40 repeat protein [F 99.9 4.2E-24 9.1E-29 197.7 18.9 263 20-415 447-714 (1080)
132 KOG1539 WD repeat protein [Gen 99.9 1.4E-22 3.1E-27 190.9 29.2 376 35-500 162-604 (910)
133 KOG0321 WD40 repeat-containing 99.9 2.7E-23 5.9E-28 190.1 21.9 305 36-463 53-391 (720)
134 KOG0269 WD40 repeat-containing 99.9 2.6E-23 5.6E-28 194.3 22.0 289 32-457 39-333 (839)
135 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 179.2 24.2 279 114-500 214-510 (514)
136 KOG0302 Ribosome Assembly prot 99.9 7.1E-23 1.5E-27 176.0 21.7 225 112-416 150-380 (440)
137 KOG0302 Ribosome Assembly prot 99.9 2.1E-22 4.5E-27 173.2 22.1 227 28-357 147-379 (440)
138 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 178.5 21.0 236 32-372 81-322 (476)
139 KOG4283 Transcription-coupled 99.9 1.2E-21 2.5E-26 163.3 22.9 305 114-500 44-363 (397)
140 KOG1036 Mitotic spindle checkp 99.9 2.3E-21 4.9E-26 162.8 24.0 246 25-404 47-294 (323)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-20 4.8E-25 172.7 33.2 290 44-483 1-300 (300)
142 KOG0267 Microtubule severing p 99.9 6.6E-24 1.4E-28 196.8 9.2 230 114-456 29-260 (825)
143 KOG2445 Nuclear pore complex c 99.9 2.2E-21 4.8E-26 162.6 22.8 281 114-500 14-316 (361)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.8E-25 173.3 30.7 265 30-437 28-300 (300)
145 KOG0646 WD40 repeat protein [G 99.9 9.2E-22 2E-26 173.9 20.6 229 217-486 80-332 (476)
146 KOG2048 WD40 repeat protein [G 99.9 4.7E-20 1E-24 170.4 32.5 393 32-500 110-546 (691)
147 KOG0639 Transducin-like enhanc 99.9 2.7E-22 5.9E-27 178.5 16.8 256 12-413 443-703 (705)
148 KOG4378 Nuclear protein COP1 [ 99.9 2.5E-21 5.3E-26 172.3 22.5 262 114-438 35-304 (673)
149 KOG1188 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 165.3 20.4 289 45-462 41-345 (376)
150 KOG0267 Microtubule severing p 99.9 2.9E-23 6.4E-28 192.5 9.4 234 29-406 25-260 (825)
151 KOG1009 Chromatin assembly com 99.9 8.8E-21 1.9E-25 164.9 23.6 252 32-369 13-282 (434)
152 KOG1445 Tumor-specific antigen 99.9 7.9E-21 1.7E-25 174.0 22.8 200 268-500 628-842 (1012)
153 KOG1034 Transcriptional repres 99.9 1.6E-20 3.5E-25 158.9 22.7 321 30-499 36-380 (385)
154 KOG0321 WD40 repeat-containing 99.9 1E-20 2.3E-25 173.4 23.2 270 215-500 97-389 (720)
155 KOG1034 Transcriptional repres 99.9 3E-21 6.4E-26 163.3 16.3 268 30-414 87-383 (385)
156 KOG0307 Vesicle coat complex C 99.9 5.5E-22 1.2E-26 193.7 13.7 251 113-461 64-325 (1049)
157 KOG0290 Conserved WD40 repeat- 99.9 1E-19 2.2E-24 151.5 24.1 208 215-499 147-362 (364)
158 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 165.2 19.7 267 35-419 176-454 (463)
159 KOG1274 WD40 repeat protein [G 99.9 7.6E-20 1.7E-24 174.6 25.6 270 114-492 14-289 (933)
160 KOG1538 Uncharacterized conser 99.9 2.7E-20 5.9E-25 171.5 21.4 233 34-414 14-252 (1081)
161 KOG1963 WD40 repeat protein [G 99.9 6.3E-19 1.4E-23 168.0 31.1 395 36-501 20-537 (792)
162 KOG4227 WD40 repeat protein [G 99.9 8.2E-20 1.8E-24 158.1 21.7 270 27-415 51-323 (609)
163 KOG0303 Actin-binding protein 99.9 1.8E-19 3.9E-24 156.1 23.2 292 14-438 9-320 (472)
164 KOG1517 Guanine nucleotide bin 99.9 2E-19 4.4E-24 174.0 24.5 308 34-416 1066-1383(1387)
165 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-20 7.5E-25 165.1 17.3 223 33-396 80-305 (673)
166 KOG0642 Cell-cycle nuclear pro 99.9 1.9E-20 4.1E-25 169.5 15.6 274 28-418 290-565 (577)
167 KOG0307 Vesicle coat complex C 99.8 1.1E-20 2.4E-25 184.8 14.0 261 24-417 56-330 (1049)
168 KOG0270 WD40 repeat-containing 99.8 1.6E-19 3.4E-24 158.9 19.2 201 215-463 240-449 (463)
169 KOG1007 WD repeat protein TSSC 99.8 3.9E-19 8.5E-24 147.9 19.9 248 215-496 60-354 (370)
170 KOG0649 WD40 repeat protein [G 99.8 4.8E-18 1E-22 138.0 24.6 262 33-414 11-274 (325)
171 KOG1273 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 147.1 21.0 199 116-415 26-227 (405)
172 KOG1007 WD repeat protein TSSC 99.8 2E-18 4.4E-23 143.7 19.7 258 31-414 62-361 (370)
173 KOG0644 Uncharacterized conser 99.8 8.6E-20 1.9E-24 172.3 12.4 260 28-437 186-448 (1113)
174 KOG0303 Actin-binding protein 99.8 3E-18 6.5E-23 148.7 20.3 218 30-366 79-304 (472)
175 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-16 7E-21 152.5 37.3 325 28-500 61-398 (466)
176 KOG0322 G-protein beta subunit 99.8 4.2E-18 9.2E-23 140.0 18.5 300 30-413 12-322 (323)
177 KOG0650 WD40 repeat nucleolar 99.8 2.7E-18 5.9E-23 156.5 19.0 252 92-460 391-677 (733)
178 KOG1240 Protein kinase contain 99.8 7.4E-17 1.6E-21 158.9 29.4 293 8-416 1028-1336(1431)
179 KOG1524 WD40 repeat-containing 99.8 7.9E-18 1.7E-22 151.6 20.5 271 45-500 76-346 (737)
180 KOG1445 Tumor-specific antigen 99.8 2.5E-18 5.4E-23 157.8 17.5 262 40-429 587-859 (1012)
181 KOG4328 WD40 protein [Function 99.8 9.3E-18 2E-22 148.4 18.8 245 215-500 183-448 (498)
182 KOG1009 Chromatin assembly com 99.8 3.9E-17 8.5E-22 142.4 21.4 268 29-416 62-374 (434)
183 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 150.3 18.9 205 232-499 77-282 (737)
184 KOG2919 Guanine nucleotide-bin 99.8 3.1E-17 6.7E-22 138.9 19.1 294 115-497 51-364 (406)
185 KOG1587 Cytoplasmic dynein int 99.8 1.3E-16 2.7E-21 152.2 24.5 284 13-416 226-518 (555)
186 KOG2110 Uncharacterized conser 99.8 1.7E-15 3.7E-20 130.9 29.0 240 32-416 5-250 (391)
187 PRK11028 6-phosphogluconolacto 99.8 1.6E-15 3.4E-20 141.6 31.1 266 27-414 29-304 (330)
188 KOG1538 Uncharacterized conser 99.8 3E-17 6.5E-22 151.7 18.3 237 30-414 51-293 (1081)
189 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-14 2.8E-19 141.2 37.6 317 33-500 110-440 (466)
190 PRK01742 tolB translocation pr 99.8 1.1E-16 2.4E-21 153.9 22.3 213 114-438 204-426 (429)
191 PRK11028 6-phosphogluconolacto 99.8 2E-15 4.4E-20 140.9 29.3 238 219-500 35-302 (330)
192 KOG1587 Cytoplasmic dynein int 99.8 1.2E-15 2.6E-20 145.6 27.7 223 114-416 243-474 (555)
193 KOG0290 Conserved WD40 repeat- 99.7 1.4E-16 3.1E-21 132.9 18.0 209 29-353 147-362 (364)
194 KOG1523 Actin-related protein 99.7 5.4E-16 1.2E-20 131.4 19.4 226 32-365 10-245 (361)
195 KOG1310 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 143.6 16.1 241 26-357 44-304 (758)
196 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 139.5 29.1 307 29-464 202-539 (792)
197 KOG1334 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 142.0 14.5 306 27-462 137-465 (559)
198 KOG0322 G-protein beta subunit 99.7 4.4E-16 9.5E-21 128.3 15.9 289 114-461 15-321 (323)
199 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-16 7.1E-21 142.4 16.4 268 95-463 288-561 (577)
200 KOG4227 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 133.8 17.4 229 93-419 48-279 (609)
201 KOG4497 Uncharacterized conser 99.7 1E-15 2.3E-20 130.0 17.8 220 37-412 13-238 (447)
202 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 129.9 18.3 268 128-500 41-344 (376)
203 KOG4497 Uncharacterized conser 99.7 5.2E-15 1.1E-19 125.9 20.5 288 32-415 48-392 (447)
204 PRK01742 tolB translocation pr 99.7 2.4E-15 5.3E-20 144.6 20.6 216 30-395 201-426 (429)
205 KOG2139 WD40 repeat protein [G 99.7 2.6E-14 5.6E-19 123.2 24.2 268 32-415 98-384 (445)
206 KOG2110 Uncharacterized conser 99.7 5.3E-14 1.1E-18 121.8 25.1 155 220-419 48-209 (391)
207 KOG1240 Protein kinase contain 99.7 3.7E-14 8E-19 140.3 27.1 241 88-426 1035-1284(1431)
208 KOG0771 Prolactin regulatory e 99.7 1.3E-15 2.8E-20 134.0 15.2 203 36-300 148-356 (398)
209 KOG1523 Actin-related protein 99.7 7.1E-15 1.5E-19 124.7 18.6 242 114-437 11-259 (361)
210 KOG2321 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 133.6 20.2 290 27-415 46-344 (703)
211 KOG0649 WD40 repeat protein [G 99.7 8.4E-14 1.8E-18 113.7 23.7 257 22-412 52-314 (325)
212 PRK03629 tolB translocation pr 99.7 1.2E-13 2.5E-18 132.7 28.4 212 114-437 199-427 (429)
213 KOG0771 Prolactin regulatory e 99.7 2.6E-15 5.5E-20 132.1 14.6 188 222-457 148-347 (398)
214 KOG1310 WD40 repeat protein [G 99.7 4E-15 8.6E-20 134.9 15.9 248 95-423 44-312 (758)
215 KOG1272 WD40-repeat-containing 99.7 8.3E-16 1.8E-20 136.5 11.0 264 115-496 131-402 (545)
216 KOG1517 Guanine nucleotide bin 99.6 5.4E-14 1.2E-18 137.0 23.8 296 116-500 1067-1379(1387)
217 KOG2139 WD40 repeat protein [G 99.6 4.2E-13 9.1E-18 115.9 25.2 266 32-414 140-431 (445)
218 KOG2111 Uncharacterized conser 99.6 3.7E-12 8.1E-17 108.4 29.3 163 216-416 92-258 (346)
219 KOG1334 WD40 repeat protein [G 99.6 1.2E-14 2.5E-19 130.1 13.5 305 92-501 133-465 (559)
220 PRK05137 tolB translocation pr 99.6 1.3E-12 2.8E-17 126.3 28.8 211 114-437 202-432 (435)
221 PRK02889 tolB translocation pr 99.6 6.5E-13 1.4E-17 127.7 25.6 214 114-437 196-424 (427)
222 PRK03629 tolB translocation pr 99.6 7.4E-13 1.6E-17 127.1 25.7 216 216-484 196-428 (429)
223 PF08662 eIF2A: Eukaryotic tra 99.6 1.3E-13 2.9E-18 116.4 17.4 148 222-414 9-179 (194)
224 PRK04922 tolB translocation pr 99.6 8.6E-13 1.9E-17 127.3 25.0 212 114-437 204-432 (433)
225 KOG2315 Predicted translation 99.6 1E-11 2.3E-16 113.6 30.1 313 32-500 34-388 (566)
226 KOG3881 Uncharacterized conser 99.6 3E-13 6.6E-18 118.0 18.1 261 31-419 54-325 (412)
227 PRK02889 tolB translocation pr 99.6 1E-12 2.3E-17 126.3 23.5 216 216-484 193-425 (427)
228 PRK04922 tolB translocation pr 99.6 5.3E-13 1.1E-17 128.8 21.5 206 30-370 201-423 (433)
229 PF02239 Cytochrom_D1: Cytochr 99.5 1.6E-11 3.5E-16 114.3 29.5 322 45-501 6-346 (369)
230 KOG1272 WD40-repeat-containing 99.5 3.7E-14 8E-19 126.2 10.7 256 33-439 130-391 (545)
231 KOG0644 Uncharacterized conser 99.5 8.8E-15 1.9E-19 139.0 6.4 277 94-500 183-466 (1113)
232 PF10282 Lactonase: Lactonase, 99.5 4.2E-10 9.2E-15 105.1 37.6 176 218-415 86-276 (345)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 5E-13 1.1E-17 121.2 17.0 94 218-337 290-384 (636)
234 PRK05137 tolB translocation pr 99.5 8E-12 1.7E-16 120.8 26.0 215 215-484 198-433 (435)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-13 5.4E-18 123.1 14.0 190 227-437 182-384 (636)
236 PF08662 eIF2A: Eukaryotic tra 99.5 2.2E-12 4.8E-17 109.0 19.0 117 217-366 58-187 (194)
237 COG2706 3-carboxymuconate cycl 99.5 2.9E-10 6.2E-15 99.3 31.5 171 220-416 90-276 (346)
238 PF02239 Cytochrom_D1: Cytochr 99.5 4E-11 8.8E-16 111.7 28.4 269 35-424 39-356 (369)
239 PF10282 Lactonase: Lactonase, 99.5 3.6E-10 7.8E-15 105.6 34.6 271 32-414 36-322 (345)
240 COG2706 3-carboxymuconate cycl 99.5 2.9E-10 6.4E-15 99.2 30.8 290 13-416 20-323 (346)
241 KOG2041 WD40 repeat protein [G 99.5 3.6E-12 7.9E-17 119.6 20.0 256 31-405 13-279 (1189)
242 KOG3881 Uncharacterized conser 99.5 7.2E-12 1.6E-16 109.5 19.1 281 114-486 56-344 (412)
243 TIGR02800 propeller_TolB tol-p 99.5 6.2E-11 1.3E-15 114.8 27.5 191 114-414 190-397 (417)
244 PRK04792 tolB translocation pr 99.4 1.2E-10 2.6E-15 112.5 27.0 211 114-437 218-446 (448)
245 KOG2111 Uncharacterized conser 99.4 7.3E-11 1.6E-15 100.6 21.7 233 219-500 6-254 (346)
246 KOG2321 WD40 repeat protein [G 99.4 1.3E-10 2.9E-15 106.7 24.5 284 110-495 48-335 (703)
247 PRK00178 tolB translocation pr 99.4 8.9E-11 1.9E-15 113.8 24.3 204 30-368 196-416 (430)
248 PRK00178 tolB translocation pr 99.4 4E-10 8.6E-15 109.3 28.2 212 114-437 199-427 (430)
249 PRK04792 tolB translocation pr 99.4 7.9E-11 1.7E-15 113.7 22.1 206 30-370 215-437 (448)
250 TIGR02800 propeller_TolB tol-p 99.4 2.2E-10 4.8E-15 110.9 25.3 187 216-457 187-387 (417)
251 COG5354 Uncharacterized protei 99.4 3.7E-10 8.1E-15 102.4 23.7 294 32-416 32-397 (561)
252 PRK01029 tolB translocation pr 99.3 2.4E-09 5.2E-14 102.6 27.1 174 221-437 233-424 (428)
253 PRK01029 tolB translocation pr 99.3 1.2E-09 2.7E-14 104.6 24.8 111 221-357 283-404 (428)
254 COG4946 Uncharacterized protei 99.3 5.2E-09 1.1E-13 94.3 26.4 145 215-403 356-507 (668)
255 KOG0974 WD-repeat protein WDR6 99.3 2.1E-10 4.5E-15 112.7 18.9 150 38-300 139-290 (967)
256 KOG1354 Serine/threonine prote 99.3 1.5E-10 3.2E-15 99.8 15.7 251 114-428 26-315 (433)
257 KOG0280 Uncharacterized conser 99.3 1.1E-09 2.5E-14 92.5 20.3 159 220-416 123-286 (339)
258 KOG2314 Translation initiation 99.3 6.4E-09 1.4E-13 95.5 26.7 316 35-500 213-571 (698)
259 KOG2314 Translation initiation 99.3 3.4E-09 7.5E-14 97.2 24.6 276 33-414 250-573 (698)
260 KOG2315 Predicted translation 99.3 1.7E-09 3.7E-14 99.4 22.5 129 239-415 251-391 (566)
261 KOG1409 Uncharacterized conser 99.3 3.2E-10 7E-15 97.7 16.4 205 32-301 68-273 (404)
262 PF04762 IKI3: IKI3 family; I 99.3 2.8E-08 6.1E-13 103.1 33.6 354 32-500 75-454 (928)
263 KOG4547 WD40 repeat-containing 99.3 1.1E-09 2.4E-14 101.3 20.3 194 41-357 2-221 (541)
264 KOG4547 WD40 repeat-containing 99.2 6.7E-10 1.5E-14 102.7 17.0 208 125-415 3-221 (541)
265 KOG0974 WD-repeat protein WDR6 99.2 4.7E-10 1E-14 110.2 16.6 148 225-415 140-289 (967)
266 KOG0280 Uncharacterized conser 99.2 5.8E-09 1.3E-13 88.3 19.3 266 193-499 45-330 (339)
267 PF04762 IKI3: IKI3 family; I 99.2 2.3E-07 5E-12 96.4 34.8 172 223-415 261-457 (928)
268 KOG1912 WD40 repeat protein [G 99.2 4.3E-09 9.3E-14 100.4 19.6 381 31-482 54-572 (1062)
269 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.9E-07 8.4E-12 83.2 31.2 253 121-419 53-335 (352)
270 KOG4532 WD40-like repeat conta 99.1 1.5E-08 3.3E-13 84.6 19.8 168 221-415 161-332 (344)
271 KOG1064 RAVE (regulator of V-A 99.1 4.4E-10 9.6E-15 116.1 12.8 194 31-303 2207-2403(2439)
272 COG4946 Uncharacterized protei 99.1 8.9E-08 1.9E-12 86.5 24.8 148 28-288 355-508 (668)
273 KOG3914 WD repeat protein WDR4 99.1 2E-09 4.4E-14 95.0 13.8 80 215-303 148-228 (390)
274 PLN02919 haloacid dehalogenase 99.1 2.1E-07 4.5E-12 98.6 31.5 187 221-418 685-892 (1057)
275 KOG1409 Uncharacterized conser 99.1 1.8E-08 3.9E-13 87.2 17.5 250 92-462 15-269 (404)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.1E-07 1.1E-11 82.5 27.7 252 40-365 53-338 (352)
277 KOG2041 WD40 repeat protein [G 99.0 5.7E-09 1.2E-13 98.7 14.8 170 114-356 15-186 (1189)
278 PRK04043 tolB translocation pr 99.0 1.2E-07 2.6E-12 90.3 24.0 198 33-367 188-409 (419)
279 COG5170 CDC55 Serine/threonine 99.0 7E-09 1.5E-13 88.4 12.9 249 114-428 27-323 (460)
280 KOG0309 Conserved WD40 repeat- 99.0 3.6E-09 7.8E-14 100.3 12.1 299 30-463 22-339 (1081)
281 KOG0309 Conserved WD40 repeat- 99.0 2.9E-09 6.4E-14 100.9 10.9 238 223-499 72-336 (1081)
282 KOG4190 Uncharacterized conser 99.0 2.3E-09 4.9E-14 98.3 9.6 218 94-416 728-950 (1034)
283 KOG0882 Cyclophilin-related pe 99.0 4.3E-08 9.3E-13 87.9 17.1 325 29-411 6-369 (558)
284 PRK04043 tolB translocation pr 98.9 1.7E-06 3.7E-11 82.6 27.4 148 220-415 234-401 (419)
285 TIGR03300 assembly_YfgL outer 98.9 2.5E-06 5.4E-11 81.4 28.3 155 231-419 146-302 (377)
286 PF15492 Nbas_N: Neuroblastoma 98.9 5.7E-06 1.2E-10 70.7 26.5 182 220-417 45-262 (282)
287 KOG1064 RAVE (regulator of V-A 98.9 3.6E-08 7.8E-13 102.5 15.7 190 215-465 2205-2400(2439)
288 KOG4190 Uncharacterized conser 98.9 1.2E-08 2.5E-13 93.8 10.3 178 29-303 732-911 (1034)
289 PLN02919 haloacid dehalogenase 98.9 5.7E-06 1.2E-10 87.9 31.7 189 219-416 624-835 (1057)
290 COG5354 Uncharacterized protei 98.9 1.7E-06 3.7E-11 79.2 23.6 263 114-492 33-334 (561)
291 KOG4714 Nucleoporin [Nuclear s 98.9 8.5E-08 1.8E-12 80.0 14.0 72 329-415 181-255 (319)
292 KOG2695 WD40 repeat protein [G 98.9 1.7E-08 3.6E-13 87.4 9.6 154 232-424 227-385 (425)
293 KOG3914 WD repeat protein WDR4 98.8 5.5E-08 1.2E-12 86.1 12.8 160 222-419 66-228 (390)
294 PF08450 SGL: SMP-30/Gluconola 98.8 1.3E-05 2.7E-10 71.5 27.8 226 37-401 4-242 (246)
295 PF08450 SGL: SMP-30/Gluconola 98.8 3.9E-05 8.4E-10 68.3 30.5 177 221-436 42-233 (246)
296 KOG1912 WD40 repeat protein [G 98.8 1.4E-06 3E-11 83.8 21.8 258 32-415 15-305 (1062)
297 KOG4532 WD40-like repeat conta 98.8 9.6E-07 2.1E-11 74.2 17.3 229 231-500 85-329 (344)
298 KOG4714 Nucleoporin [Nuclear s 98.8 1.4E-07 3.1E-12 78.7 12.0 74 219-299 180-255 (319)
299 PF15492 Nbas_N: Neuroblastoma 98.7 4.9E-06 1.1E-10 71.1 20.6 183 34-303 45-264 (282)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 1.5E-08 3.3E-13 98.2 5.2 202 91-418 1091-1295(1516)
301 PF07433 DUF1513: Protein of u 98.7 2.8E-05 6.1E-10 68.7 25.0 242 33-407 5-278 (305)
302 TIGR03300 assembly_YfgL outer 98.7 2.4E-05 5.2E-10 74.6 25.7 275 43-428 64-351 (377)
303 KOG2114 Vacuolar assembly/sort 98.6 1.8E-05 3.8E-10 77.5 23.1 131 216-369 123-256 (933)
304 KOG0882 Cyclophilin-related pe 98.6 1.3E-06 2.9E-11 78.6 14.4 290 106-500 2-303 (558)
305 PF00400 WD40: WD domain, G-be 98.6 6.4E-08 1.4E-12 58.1 3.9 31 30-60 9-39 (39)
306 PF00930 DPPIV_N: Dipeptidyl p 98.6 6.6E-05 1.4E-09 70.6 25.5 318 41-492 1-346 (353)
307 PF00400 WD40: WD domain, G-be 98.6 3.5E-07 7.6E-12 54.8 6.7 38 92-143 2-39 (39)
308 PF13360 PQQ_2: PQQ-like domai 98.5 0.00011 2.4E-09 65.1 24.9 157 230-418 76-234 (238)
309 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.5E-12 92.3 5.6 216 30-400 1099-1317(1516)
310 KOG2066 Vacuolar assembly/sort 98.5 8.4E-06 1.8E-10 79.1 17.6 192 29-356 36-233 (846)
311 KOG3617 WD40 and TPR repeat-co 98.4 1.5E-05 3.2E-10 77.7 17.5 110 35-248 18-132 (1416)
312 KOG2695 WD40 repeat protein [G 98.4 1.5E-06 3.2E-11 75.7 7.7 148 31-276 251-401 (425)
313 PF07433 DUF1513: Protein of u 98.4 0.00012 2.5E-09 64.9 19.5 115 216-354 160-283 (305)
314 KOG3621 WD40 repeat-containing 98.4 9E-05 1.9E-09 71.2 20.0 123 31-248 32-155 (726)
315 KOG2066 Vacuolar assembly/sort 98.3 4.1E-05 8.9E-10 74.5 17.5 144 220-419 41-192 (846)
316 KOG1920 IkappaB kinase complex 98.3 0.00044 9.5E-09 70.8 25.0 242 33-357 69-323 (1265)
317 KOG1645 RING-finger-containing 98.3 9.3E-05 2E-09 66.2 16.8 78 30-148 191-269 (463)
318 KOG1008 Uncharacterized conser 98.3 3.1E-07 6.8E-12 86.3 1.6 208 114-415 57-276 (783)
319 KOG1645 RING-finger-containing 98.3 0.00018 3.8E-09 64.5 18.4 75 114-251 194-270 (463)
320 KOG1920 IkappaB kinase complex 98.2 0.00037 8E-09 71.3 22.7 224 218-500 68-320 (1265)
321 PF08596 Lgl_C: Lethal giant l 98.2 0.00072 1.6E-08 63.7 23.2 276 34-412 3-333 (395)
322 KOG2114 Vacuolar assembly/sort 98.2 0.00045 9.7E-09 68.1 21.8 166 231-428 78-257 (933)
323 PF11768 DUF3312: Protein of u 98.2 0.00028 6E-09 66.9 19.1 76 215-301 256-332 (545)
324 PF11768 DUF3312: Protein of u 98.2 0.00018 4E-09 68.1 17.8 72 327-416 259-331 (545)
325 KOG1275 PAB-dependent poly(A) 98.2 5.1E-05 1.1E-09 74.8 14.5 152 115-355 179-341 (1118)
326 KOG1008 Uncharacterized conser 98.2 2.3E-06 5E-11 80.7 4.8 211 31-357 55-276 (783)
327 KOG1275 PAB-dependent poly(A) 98.2 7.3E-05 1.6E-09 73.8 15.0 143 228-412 185-340 (1118)
328 PRK11138 outer membrane biogen 98.1 0.004 8.7E-08 59.7 27.1 149 232-418 162-316 (394)
329 PF06977 SdiA-regulated: SdiA- 98.1 0.0014 3.1E-08 57.2 21.4 129 216-353 115-247 (248)
330 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0094 2E-07 57.1 29.0 40 328-368 217-257 (410)
331 COG0823 TolB Periplasmic compo 98.1 0.00028 6.1E-09 67.1 18.1 158 218-417 192-361 (425)
332 PRK02888 nitrous-oxide reducta 98.1 0.002 4.3E-08 62.8 23.5 97 388-492 324-450 (635)
333 PF08596 Lgl_C: Lethal giant l 98.1 0.0049 1.1E-07 58.2 25.6 249 115-419 3-295 (395)
334 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.3E-07 54.5 25.4 82 31-153 34-118 (386)
335 PF06433 Me-amine-dh_H: Methyl 98.0 0.011 2.3E-07 53.5 24.8 260 118-419 40-325 (342)
336 PF06977 SdiA-regulated: SdiA- 98.0 0.0035 7.7E-08 54.8 21.2 174 215-414 18-201 (248)
337 PRK11138 outer membrane biogen 98.0 0.0039 8.4E-08 59.8 23.7 102 281-419 257-358 (394)
338 KOG3621 WD40 repeat-containing 98.0 0.0012 2.6E-08 63.8 18.8 121 114-299 34-155 (726)
339 COG0823 TolB Periplasmic compo 97.9 0.00069 1.5E-08 64.5 16.9 199 32-362 192-406 (425)
340 PF04053 Coatomer_WDAD: Coatom 97.9 0.013 2.7E-07 56.3 24.7 145 230-415 117-263 (443)
341 PF08553 VID27: VID27 cytoplas 97.9 0.0015 3.3E-08 66.1 18.7 103 232-356 544-647 (794)
342 PRK02888 nitrous-oxide reducta 97.9 0.011 2.5E-07 57.8 23.8 71 328-415 321-405 (635)
343 PF13360 PQQ_2: PQQ-like domai 97.8 0.0084 1.8E-07 53.0 21.3 108 230-362 122-235 (238)
344 KOG3617 WD40 and TPR repeat-co 97.8 0.0011 2.4E-08 65.3 15.8 114 171-299 16-132 (1416)
345 PF06433 Me-amine-dh_H: Methyl 97.8 0.028 6E-07 50.9 24.3 242 224-501 41-319 (342)
346 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.003 6.4E-08 46.6 14.1 65 35-144 2-70 (111)
347 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.077 1.7E-06 50.2 26.2 96 323-419 303-403 (415)
348 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.01 2.2E-07 43.9 14.3 65 217-293 41-109 (111)
349 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.055 1.2E-06 51.0 23.4 280 32-402 42-345 (353)
350 PF04053 Coatomer_WDAD: Coatom 97.5 0.014 3E-07 56.1 18.9 102 221-357 71-174 (443)
351 cd00216 PQQ_DH Dehydrogenases 97.5 0.061 1.3E-06 53.1 24.0 29 395-424 405-433 (488)
352 KOG4640 Anaphase-promoting com 97.5 0.00061 1.3E-08 64.9 9.3 77 218-304 20-98 (665)
353 PF08553 VID27: VID27 cytoplas 97.5 0.03 6.6E-07 57.0 21.4 143 281-500 494-645 (794)
354 PF04841 Vps16_N: Vps16, N-ter 97.5 0.11 2.4E-06 49.9 27.5 165 219-416 81-248 (410)
355 KOG1897 Damage-specific DNA bi 97.4 0.18 3.8E-06 51.6 31.0 102 382-492 772-887 (1096)
356 PF03178 CPSF_A: CPSF A subuni 97.4 0.083 1.8E-06 49.1 22.2 116 216-356 86-202 (321)
357 KOG4640 Anaphase-promoting com 97.3 0.0014 3E-08 62.6 9.0 93 328-436 21-114 (665)
358 PF05694 SBP56: 56kDa selenium 97.3 0.16 3.5E-06 47.5 24.0 119 237-364 220-350 (461)
359 COG3386 Gluconolactonase [Carb 97.2 0.15 3.3E-06 46.4 22.9 92 264-370 159-255 (307)
360 smart00320 WD40 WD40 repeats. 97.2 0.00051 1.1E-08 40.1 3.9 31 30-60 10-40 (40)
361 COG3490 Uncharacterized protei 97.2 0.043 9.4E-07 47.6 16.3 103 271-403 71-180 (366)
362 PF00780 CNH: CNH domain; Int 97.2 0.16 3.4E-06 46.0 24.2 230 228-501 5-254 (275)
363 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.7E-08 39.9 5.6 31 32-62 11-41 (47)
364 smart00320 WD40 WD40 repeats. 97.1 0.0014 3.1E-08 38.1 5.1 37 93-143 4-40 (40)
365 PF02897 Peptidase_S9_N: Proly 97.1 0.3 6.4E-06 47.3 28.5 33 34-66 125-162 (414)
366 KOG2395 Protein involved in va 97.1 0.019 4.1E-07 54.1 13.8 101 234-356 398-500 (644)
367 KOG2395 Protein involved in va 97.1 0.015 3.3E-07 54.7 13.0 140 282-498 348-496 (644)
368 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.13 2.7E-06 44.2 16.9 112 274-420 17-129 (354)
369 PF03178 CPSF_A: CPSF A subuni 96.9 0.33 7.2E-06 45.1 21.4 137 239-415 62-203 (321)
370 PF14583 Pectate_lyase22: Olig 96.9 0.34 7.3E-06 45.0 20.6 99 327-443 187-296 (386)
371 PF00780 CNH: CNH domain; Int 96.9 0.33 7.1E-06 43.9 24.5 252 42-369 5-267 (275)
372 KOG1897 Damage-specific DNA bi 96.7 0.98 2.1E-05 46.5 29.4 113 269-415 776-899 (1096)
373 COG3490 Uncharacterized protei 96.6 0.092 2E-06 45.7 13.5 86 217-303 224-315 (366)
374 COG3391 Uncharacterized conser 96.4 0.94 2E-05 43.2 24.2 123 222-366 163-292 (381)
375 COG3391 Uncharacterized conser 96.2 1.2 2.6E-05 42.5 23.8 157 220-416 117-285 (381)
376 PRK13616 lipoprotein LpqB; Pro 96.2 1.3 2.8E-05 44.6 20.7 126 221-361 399-530 (591)
377 COG3386 Gluconolactonase [Carb 96.1 1 2.3E-05 41.1 22.4 93 328-437 163-264 (307)
378 PF10647 Gmad1: Lipoprotein Lp 96.1 0.43 9.3E-06 42.4 15.5 155 220-406 25-187 (253)
379 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.2E-07 34.9 5.0 30 114-145 12-41 (47)
380 KOG2079 Vacuolar assembly/sort 96.0 0.043 9.2E-07 56.3 9.3 103 281-414 100-203 (1206)
381 PF12234 Rav1p_C: RAVE protein 95.7 0.23 4.9E-06 49.5 13.1 88 11-144 16-103 (631)
382 PF10647 Gmad1: Lipoprotein Lp 95.7 0.48 1E-05 42.1 14.1 139 329-493 25-185 (253)
383 COG3204 Uncharacterized protei 95.7 1.4 3E-05 39.0 20.9 183 114-368 86-273 (316)
384 PF08728 CRT10: CRT10; InterP 95.7 1.3 2.9E-05 44.8 18.1 76 217-297 162-245 (717)
385 PRK13616 lipoprotein LpqB; Pro 95.7 0.25 5.4E-06 49.6 13.4 59 328-405 350-417 (591)
386 PF12234 Rav1p_C: RAVE protein 95.6 0.74 1.6E-05 46.0 16.2 117 220-356 31-156 (631)
387 COG3204 Uncharacterized protei 95.6 1.6 3.4E-05 38.7 20.2 177 32-300 85-265 (316)
388 KOG2079 Vacuolar assembly/sort 95.4 0.054 1.2E-06 55.6 7.8 83 339-437 99-182 (1206)
389 PF14870 PSII_BNR: Photosynthe 95.4 2 4.4E-05 39.0 23.8 118 216-353 184-301 (302)
390 PF07995 GSDH: Glucose / Sorbo 95.4 2.3 5E-05 39.6 26.0 57 220-278 3-59 (331)
391 TIGR03606 non_repeat_PQQ dehyd 95.4 2.9 6.2E-05 40.4 19.5 60 218-278 29-89 (454)
392 cd00216 PQQ_DH Dehydrogenases 95.3 3.4 7.3E-05 41.0 27.9 26 128-153 111-136 (488)
393 PF15390 DUF4613: Domain of un 95.0 0.77 1.7E-05 44.5 13.4 158 218-413 19-185 (671)
394 KOG2444 WD40 repeat protein [G 95.0 0.077 1.7E-06 44.6 6.2 105 281-416 71-179 (238)
395 PF15390 DUF4613: Domain of un 94.9 2.1 4.5E-05 41.7 16.0 71 223-300 117-188 (671)
396 PF10313 DUF2415: Uncharacteri 94.8 0.12 2.6E-06 30.8 4.9 32 268-299 1-34 (43)
397 KOG4649 PQQ (pyrrolo-quinoline 94.8 2.4 5.3E-05 36.7 28.4 144 43-299 22-166 (354)
398 TIGR02604 Piru_Ver_Nterm putat 94.7 1.6 3.5E-05 41.4 15.2 112 269-404 15-143 (367)
399 KOG3630 Nuclear pore complex, 94.6 0.32 6.8E-06 50.7 10.5 62 218-285 198-260 (1405)
400 PF10168 Nup88: Nuclear pore c 94.5 1.2 2.6E-05 45.9 14.6 97 328-424 85-189 (717)
401 TIGR02604 Piru_Ver_Nterm putat 94.4 2.2 4.8E-05 40.5 15.3 110 219-344 14-140 (367)
402 PF10313 DUF2415: Uncharacteri 94.0 0.21 4.5E-06 29.8 4.7 31 33-63 1-34 (43)
403 PF05694 SBP56: 56kDa selenium 94.0 2.4 5.2E-05 40.1 13.9 149 193-345 221-391 (461)
404 PF02897 Peptidase_S9_N: Proly 93.9 6.7 0.00014 38.0 25.3 115 220-357 125-261 (414)
405 KOG2444 WD40 repeat protein [G 93.9 0.28 6E-06 41.4 7.0 62 228-298 112-177 (238)
406 PF07569 Hira: TUP1-like enhan 93.8 0.38 8.2E-06 41.6 8.2 79 275-357 18-96 (219)
407 PF10168 Nup88: Nuclear pore c 93.8 9.5 0.00021 39.5 24.5 84 218-301 84-182 (717)
408 PRK13684 Ycf48-like protein; P 93.5 6.6 0.00014 36.6 17.4 119 216-355 212-330 (334)
409 KOG2280 Vacuolar assembly/sort 93.0 11 0.00025 38.0 17.6 88 195-295 65-152 (829)
410 KOG3630 Nuclear pore complex, 92.9 1.9 4.2E-05 45.3 12.5 103 219-344 156-260 (1405)
411 KOG1916 Nuclear protein, conta 92.8 0.2 4.4E-06 50.6 5.5 94 194-298 153-265 (1283)
412 PHA02713 hypothetical protein; 92.7 13 0.00027 37.7 18.5 24 395-418 512-537 (557)
413 KOG4499 Ca2+-binding protein R 92.6 6.1 0.00013 33.8 19.6 101 271-395 161-264 (310)
414 COG5167 VID27 Protein involved 92.4 11 0.00023 36.3 17.1 101 234-356 531-632 (776)
415 PF14761 HPS3_N: Hermansky-Pud 91.3 8.4 0.00018 32.7 12.7 128 332-500 22-161 (215)
416 PF08728 CRT10: CRT10; InterP 91.3 19 0.00042 36.9 18.1 166 230-413 49-245 (717)
417 KOG1900 Nuclear pore complex, 91.3 19 0.00042 39.0 17.6 174 222-415 82-273 (1311)
418 PF07569 Hira: TUP1-like enhan 91.0 1.3 2.9E-05 38.2 8.0 33 114-150 13-45 (219)
419 COG4590 ABC-type uncharacteriz 91.0 1.4 2.9E-05 41.4 8.2 157 327-500 220-384 (733)
420 PF05096 Glu_cyclase_2: Glutam 90.9 11 0.00024 33.4 18.1 113 222-346 133-250 (264)
421 KOG2280 Vacuolar assembly/sort 90.8 21 0.00044 36.4 18.1 40 328-368 217-257 (829)
422 KOG2377 Uncharacterized conser 90.7 6.1 0.00013 37.3 12.0 119 114-300 67-187 (657)
423 PHA02713 hypothetical protein; 90.5 6.1 0.00013 39.9 13.3 23 278-301 512-536 (557)
424 TIGR03606 non_repeat_PQQ dehyd 90.4 18 0.00039 35.1 16.7 32 33-64 30-61 (454)
425 PF05096 Glu_cyclase_2: Glutam 90.4 12 0.00026 33.0 24.5 168 209-417 35-206 (264)
426 KOG4441 Proteins containing BT 90.3 22 0.00049 36.0 18.2 25 395-419 475-504 (571)
427 KOG4441 Proteins containing BT 90.1 23 0.00051 35.9 20.5 32 116-150 325-362 (571)
428 PF07995 GSDH: Glucose / Sorbo 89.8 17 0.00037 33.9 25.9 72 326-409 251-330 (331)
429 KOG2377 Uncharacterized conser 89.5 7.5 0.00016 36.8 11.6 97 388-492 70-172 (657)
430 PF13449 Phytase-like: Esteras 89.4 18 0.0004 33.6 22.7 185 218-414 19-249 (326)
431 COG4257 Vgb Streptogramin lyas 89.3 15 0.00032 32.5 18.3 175 216-428 101-276 (353)
432 KOG4460 Nuclear pore complex, 88.9 7.7 0.00017 37.4 11.4 91 383-500 102-196 (741)
433 KOG1900 Nuclear pore complex, 88.8 6.4 0.00014 42.4 11.9 82 217-300 177-274 (1311)
434 PLN00033 photosystem II stabil 88.4 24 0.00052 33.8 18.1 119 216-353 278-396 (398)
435 PLN00033 photosystem II stabil 87.8 26 0.00057 33.5 17.4 155 221-411 241-396 (398)
436 PF14781 BBS2_N: Ciliary BBSom 87.7 11 0.00024 29.2 13.1 113 272-416 3-127 (136)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 87.5 10 0.00022 36.3 11.6 40 215-255 304-344 (415)
438 KOG2247 WD40 repeat-containing 87.2 0.075 1.6E-06 49.8 -2.4 131 270-437 37-169 (615)
439 PF03022 MRJP: Major royal jel 87.0 23 0.00051 32.1 18.6 154 240-415 35-216 (287)
440 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.8 37 0.0008 34.1 31.0 28 127-154 120-147 (527)
441 PF12657 TFIIIC_delta: Transcr 85.6 5.4 0.00012 33.1 7.9 32 269-300 87-123 (173)
442 PF14870 PSII_BNR: Photosynthe 85.4 29 0.00063 31.7 29.9 150 228-416 113-262 (302)
443 KOG1916 Nuclear protein, conta 85.1 2.5 5.4E-05 43.4 6.4 79 330-414 186-265 (1283)
444 TIGR02276 beta_rpt_yvtn 40-res 84.6 4 8.8E-05 24.0 5.1 34 337-371 1-36 (42)
445 PHA03098 kelch-like protein; P 84.5 48 0.001 33.4 17.3 22 395-416 487-513 (534)
446 PF12657 TFIIIC_delta: Transcr 84.4 11 0.00024 31.2 9.3 30 386-415 87-122 (173)
447 KOG2247 WD40 repeat-containing 84.0 0.18 4E-06 47.4 -1.6 99 219-344 75-176 (615)
448 PRK13684 Ycf48-like protein; P 83.9 37 0.00081 31.7 29.7 118 267-416 172-289 (334)
449 PRK10115 protease 2; Provision 83.8 60 0.0013 33.9 29.6 33 33-65 127-164 (686)
450 PF07676 PD40: WD40-like Beta 83.7 4.1 8.9E-05 23.6 4.8 19 474-492 9-27 (39)
451 COG5167 VID27 Protein involved 83.5 37 0.00079 33.0 12.8 138 335-498 475-628 (776)
452 PHA03098 kelch-like protein; P 83.0 55 0.0012 33.0 18.3 22 278-300 437-466 (534)
453 COG4590 ABC-type uncharacteriz 83.0 4 8.6E-05 38.5 6.4 166 215-416 217-388 (733)
454 PF14781 BBS2_N: Ciliary BBSom 81.4 23 0.00051 27.5 13.0 80 36-148 2-84 (136)
455 PF07676 PD40: WD40-like Beta 81.3 5.7 0.00012 23.0 4.7 29 31-59 7-38 (39)
456 KOG4499 Ca2+-binding protein R 80.0 39 0.00084 29.2 17.8 98 329-438 159-264 (310)
457 PF13449 Phytase-like: Esteras 79.6 53 0.0011 30.6 19.5 131 268-404 20-166 (326)
458 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.5 72 0.0016 32.1 23.6 29 391-419 307-338 (527)
459 PF03088 Str_synth: Strictosid 79.5 17 0.00038 26.0 7.4 43 287-347 34-76 (89)
460 TIGR03118 PEPCTERM_chp_1 conse 79.4 48 0.0011 30.0 22.4 57 348-419 222-284 (336)
461 PF02333 Phytase: Phytase; In 78.9 59 0.0013 30.7 23.0 152 239-416 127-292 (381)
462 COG5290 IkappaB kinase complex 78.9 85 0.0018 32.5 14.4 30 32-61 112-141 (1243)
463 PF14761 HPS3_N: Hermansky-Pud 77.2 45 0.00098 28.5 18.5 30 218-247 134-163 (215)
464 KOG1983 Tomosyn and related SN 76.9 1.2E+02 0.0026 33.2 18.8 36 28-63 31-66 (993)
465 PF08801 Nucleoporin_N: Nup133 75.5 82 0.0018 30.6 13.6 29 388-416 193-221 (422)
466 KOG1896 mRNA cleavage and poly 74.7 1.4E+02 0.003 32.8 15.6 182 11-295 1011-1210(1366)
467 PF01436 NHL: NHL repeat; Int 74.7 9.4 0.0002 20.3 3.9 25 35-59 4-28 (28)
468 PF11715 Nup160: Nucleoporin N 74.5 19 0.0004 36.5 9.1 28 126-153 229-256 (547)
469 PF11635 Med16: Mediator compl 74.4 1.2E+02 0.0027 32.1 20.7 219 121-409 56-345 (753)
470 PF14727 PHTB1_N: PTHB1 N-term 73.3 91 0.002 30.1 25.6 57 281-355 146-203 (418)
471 KOG1898 Splicing factor 3b, su 73.3 1.4E+02 0.003 32.2 26.3 33 32-64 582-620 (1205)
472 PF10214 Rrn6: RNA polymerase 72.6 1.4E+02 0.003 31.8 22.6 195 30-300 77-278 (765)
473 PF07250 Glyoxal_oxid_N: Glyox 71.6 71 0.0015 28.1 10.9 124 271-416 70-199 (243)
474 KOG1983 Tomosyn and related SN 71.2 82 0.0018 34.5 13.1 25 393-417 243-267 (993)
475 PF11715 Nup160: Nucleoporin N 71.1 20 0.00044 36.2 8.4 34 268-302 215-252 (547)
476 KOG4460 Nuclear pore complex, 70.4 1.1E+02 0.0025 30.0 12.5 87 328-418 104-202 (741)
477 PHA02790 Kelch-like protein; P 68.9 1.3E+02 0.0028 29.9 17.9 22 395-416 446-472 (480)
478 TIGR02276 beta_rpt_yvtn 40-res 66.1 24 0.00051 20.5 5.1 27 277-303 1-27 (42)
479 PF14727 PHTB1_N: PTHB1 N-term 64.3 1.4E+02 0.0031 28.8 28.9 52 237-298 153-204 (418)
480 PHA02790 Kelch-like protein; P 64.3 1.6E+02 0.0034 29.3 14.8 22 278-300 446-472 (480)
481 PF12341 DUF3639: Protein of u 63.8 20 0.00044 19.0 3.8 26 33-60 2-27 (27)
482 COG3823 Glutamine cyclotransfe 63.6 94 0.002 26.5 14.2 28 126-153 55-84 (262)
483 KOG4659 Uncharacterized conser 62.7 2.6E+02 0.0056 31.3 20.9 71 331-404 596-681 (1899)
484 TIGR03074 PQQ_membr_DH membran 60.5 2.3E+02 0.0051 30.0 23.5 28 126-153 259-286 (764)
485 PF01731 Arylesterase: Arylest 60.3 59 0.0013 23.2 6.5 27 388-414 57-84 (86)
486 TIGR03118 PEPCTERM_chp_1 conse 59.4 1.4E+02 0.0031 27.2 24.2 28 35-62 25-52 (336)
487 smart00564 PQQ beta-propeller 58.0 27 0.00059 18.9 3.9 25 128-152 7-31 (33)
488 PF08801 Nucleoporin_N: Nup133 57.9 1.9E+02 0.0041 28.1 13.9 31 268-299 190-220 (422)
489 PF14269 Arylsulfotran_2: Aryl 57.8 40 0.00086 30.9 6.8 76 328-414 144-220 (299)
490 PF10395 Utp8: Utp8 family; I 55.6 2.5E+02 0.0055 28.9 16.8 34 31-64 128-161 (670)
491 PF01731 Arylesterase: Arylest 55.5 57 0.0012 23.3 5.8 28 329-356 55-84 (86)
492 KOG4659 Uncharacterized conser 55.5 3.4E+02 0.0074 30.4 19.9 20 474-493 662-681 (1899)
493 COG5276 Uncharacterized conser 52.9 1.8E+02 0.0039 26.4 27.5 105 228-356 136-241 (370)
494 TIGR02608 delta_60_rpt delta-6 51.5 49 0.0011 21.2 4.5 19 34-52 2-20 (55)
495 KOG3522 Predicted guanine nucl 50.3 65 0.0014 33.5 7.3 74 266-357 625-698 (925)
496 KOG3616 Selective LIM binding 49.7 59 0.0013 33.2 6.8 70 216-297 12-82 (1636)
497 KOG3616 Selective LIM binding 49.7 40 0.00087 34.4 5.7 90 388-488 18-112 (1636)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 49.2 1.2E+02 0.0026 32.2 9.2 46 327-372 349-401 (912)
499 PF14269 Arylsulfotran_2: Aryl 49.0 2.2E+02 0.0047 26.2 13.9 33 34-66 145-177 (299)
500 COG5290 IkappaB kinase complex 48.5 3.5E+02 0.0076 28.5 16.8 70 271-356 250-324 (1243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-53 Score=362.36 Aligned_cols=321 Identities=17% Similarity=0.292 Sum_probs=279.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-+|.++|.|++|+|+|..||+|+.|.++|+||+.+... ..+.++|.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------------~~t~KgH~------- 157 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------------LFTCKGHK------- 157 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---------------------------ceeecCCc-------
Confidence 37999999999999999999999999999999997653 37889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.-|.||+|+ |||+.|++|+.||+|++||..+++.+-.
T Consensus 158 -----~WVlcvaws--PDgk~iASG~~dg~I~lwdpktg~~~g~------------------------------------ 194 (480)
T KOG0271|consen 158 -----NWVLCVAWS--PDGKKIASGSKDGSIRLWDPKTGQQIGR------------------------------------ 194 (480)
T ss_pred -----cEEEEEEEC--CCcchhhccccCCeEEEecCCCCCcccc------------------------------------
Confidence 899999998 8999999999999999999998874321
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-----CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
. +.+|...|++++|.| ..++|+++ .||.|+|||+. .+.++..
T Consensus 195 -----------------------~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~------- 242 (480)
T KOG0271|consen 195 -----------------------A-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT------- 242 (480)
T ss_pred -----------------------c-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------
Confidence 1 279999999999965 56789998 99999999999 6666654
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA------ 336 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s------ 336 (501)
+.+|+.+|+|+.|--+| +|++++.|++|++|+...+..+ +.+.+ |..+|+.++.+
T Consensus 243 lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkG-------------HahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKG-------------HAHWVNHLALSTDYVLR 303 (480)
T ss_pred eccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhcc-------------cchheeeeeccchhhhh
Confidence 78999999999998764 8999999999999999888665 44444 67788888776
Q ss_pred -----eCCC-------------------------EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 337 -----NDGQ-------------------------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 337 -----p~~~-------------------------~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
|.++ .|++|+| .++.+|+-....+++..+.+|...+
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV------------- 370 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV------------- 370 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe-------------
Confidence 2233 4999976 9999999876677999999999987
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cc
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS 462 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~ 462 (501)
+.+.||||++++|++|.|.+|++|+..+|+.+ .+|.+|-.+|+.++++. |.++ |++|+.|.+ ++| ..
T Consensus 371 --n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 371 --NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred --eeEEECCCccEEEEeecccceeeeeCCCcchh-hhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeee
Confidence 79999999999999999999999999999665 89999999999999998 8888 999999999 999 44
Q ss_pred cCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 463 SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 463 ~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.....++.+|...|.++.|+|||..+|+|+.|. +++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 566777889999999999999999999999665 66663
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-50 Score=338.42 Aligned_cols=426 Identities=52% Similarity=0.825 Sum_probs=355.2
Q ss_pred cccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
..+..|++.|.++.. ++..+-|++|.|..+|.+||||+.+|+|.+|.-+....
T Consensus 7 ~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~---------------------- 59 (433)
T KOG1354|consen 7 NEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK---------------------- 59 (433)
T ss_pred chhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc----------------------
Confidence 355689999988853 56678899999999999999999999999998653321
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
.++++...++.|+|||+|++++++++.|+.|+|.+..+...++..+.|++|++|.+....... ...+...
T Consensus 60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~--------- 129 (433)
T KOG1354|consen 60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE--------- 129 (433)
T ss_pred cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc---------
Confidence 278899999999999999999999999999999976777889999999999999998654333 1111000
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 248 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~ 248 (501)
.+ +.+..+.-..+.+-..+......|.+.+...|...|++++++.|++.+++++|=.|.+|+++.
T Consensus 130 -~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 130 -EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred -cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 00 111111112333444455566789999989999999999999999999999999999999999
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
..++..+++++|..++..+.-|++..|+|..+++|+..+..|+|++.|+|...++..+.+.++. ++.|..+++|.+--.
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIs 273 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIIS 273 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhh
Confidence 9999999999999999999999999999999899999999999999999999999999999999 899999999999999
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.|..+.|+++|+|+++.+.-+|++||+..+.+++.+++.|......+|++|++++|++...++|+.++.+++||+....+
T Consensus 274 SISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred hhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 99999999999999999889999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCE
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~ 487 (501)
+++++..|.....++++.......-.... .+. .++++.+.. .+ .....++...|.+.+|||.++.
T Consensus 354 rvf~~~~gsk~d~tl~asr~~~~~~~~~k---~~~-----V~~~g~r~~~~~------~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 354 RVFNLARGSKEDFTLEASRKNMKPRKVLK---LRL-----VSSSGKRKRDEI------SVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred EEecCCCCcceeecccccccCCccccccc---cee-----eecCCCcccccc------ccchhhhhhHHHhhccCCccce
Confidence 99999888777777776665532211111 111 444444433 33 3445677889999999999999
Q ss_pred EEEeeCCeEEEEeC
Q 010801 488 IACANGNSLFFHYA 501 (501)
Q Consensus 488 la~~~~~~~~i~~~ 501 (501)
+|++..+++|||++
T Consensus 420 ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 420 IAVAATNNLYIFQD 433 (433)
T ss_pred eeeeecCceEEecC
Confidence 99999999999975
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-46 Score=322.95 Aligned_cols=285 Identities=19% Similarity=0.286 Sum_probs=252.7
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++..+.+|..+.||+|++.||||+-+|.++||+..+.. .+.+|.||.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~----- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT----- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc-----
Confidence 344567899999999999999999999999999988654 458899999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.++.|+|..++..+++|+.||++++|++.+......+
T Consensus 218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------------------------------- 257 (459)
T KOG0272|consen 218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------------------------------- 257 (459)
T ss_pred -------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh---------------------------------
Confidence 8999999996435778999999999999999886533322
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|..++|+|+|++|+++ .|.+-++||+++....+. .++
T Consensus 258 ----------------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEG 301 (459)
T KOG0272|consen 258 ----------------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEG 301 (459)
T ss_pred ----------------------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hcc
Confidence 7999999999999999999999 999999999996655543 689
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+||| .++++|+.|..-+|||+++++.+ ..+. +|...|.+|+|+|+|..||+|
T Consensus 302 Hs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~-------------gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLA-------------GHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred cccccceeEecCCC-ceeeccCccchhheeecccCcEE----EEec-------------ccccceeeEeECCCceEEeec
Confidence 99999999999999 99999999999999999999754 3444 478999999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
+ |++++|||++. .+.+.++.+|...+ +.+.|+| .|.+|+|++.|++++||...+... .+.+
T Consensus 364 s~Dnt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~ksL 426 (459)
T KOG0272|consen 364 SSDNTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-LKSL 426 (459)
T ss_pred CCCCcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCccc-chhh
Confidence 5 69999999996 88899999999987 6899999 689999999999999999998844 5999
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+|.+.|.++.+++ ++.. +++++.|.+ ++|.
T Consensus 427 aGHe~kV~s~Dis~--d~~~-----i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISP--DSQA-----IATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEecc--CCce-----EEEeccCceeeecc
Confidence 99999999999999 7777 999999999 9994
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-46 Score=316.12 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=248.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|..-|.|++|+|||+.||+|+.||+|++||.++|+. ....|.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-------
Confidence 36999999999999999999999999999999999876 346799999
Q ss_pred ccccccceeEEEEee---cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~---~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|++++|.| .|...+|++++.||.++|||+..+.+....
T Consensus 201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-------------------------------- 243 (480)
T KOG0271|consen 201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-------------------------------- 243 (480)
T ss_pred -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------------------
Confidence 8999999986 567789999999999999999987765543
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|+|+.|-.+| +|++| .|++|++|+.. .+.+.+ .+.
T Consensus 244 -----------------------------sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r-------~lk 285 (480)
T KOG0271|consen 244 -----------------------------SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCR-------ELK 285 (480)
T ss_pred -----------------------------ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHH-------hhc
Confidence 7999999999998776 88999 99999999998 455555 388
Q ss_pred CcccceEEEEEe-----------cCC------------------------CcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 265 DLTEVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 265 ~~~~~v~~v~~~-----------p~~------------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
+|...|+.++.+ |.+ ++.|++|+.|.++.+|+....+.. +..
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r 362 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR 362 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh
Confidence 999999999887 222 135999999999999997654311 122
Q ss_pred eecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..+|..-|+.+.||||++++|+++ |..|++||-++ ++.+.+|.+|-..+ +
T Consensus 363 -------------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Y 413 (480)
T KOG0271|consen 363 -------------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------Y 413 (480)
T ss_pred -------------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------E
Confidence 345788999999999999999998 59999999997 99999999999887 7
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.++|+.|.++|++||.|.++++|++.+. .+...+.+|.+.|.++.++| +|.. .++|+.|+. ++|.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLWR 479 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEeec
Confidence 8999999999999999999999999987 66689999999999999999 7887 899999999 9983
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.8e-43 Score=301.30 Aligned_cols=276 Identities=17% Similarity=0.218 Sum_probs=245.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|..+.|+ .++..|++||.+|.++||+..+......+
T Consensus 176 rPis~~~fS--~ds~~laT~swsG~~kvW~~~~~~~~~~l---------------------------------------- 213 (459)
T KOG0272|consen 176 RPISGCSFS--RDSKHLATGSWSGLVKVWSVPQCNLLQTL---------------------------------------- 213 (459)
T ss_pred CcceeeEee--cCCCeEEEeecCCceeEeecCCcceeEEE----------------------------------------
Confidence 789999998 79999999999999999999887544433
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|...|.++.|+|. +..+++| .||++++|+++ +...+. .+.+|...|
T Consensus 214 ---------------------~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH~~RV 264 (459)
T KOG0272|consen 214 ---------------------RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGHLARV 264 (459)
T ss_pred ---------------------eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcchhhh
Confidence 799999999999997 6689999 99999999999 444443 389999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..++|+|+| ++|++++.|.+-++||++++... ... .||...|.+++|.|||.++++|+ |..
T Consensus 265 s~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~Q-------------EGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 265 SRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQ-------------EGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred eeeeecCCC-ceeeecccccchhhcccccchhh----Hhh-------------cccccccceeEecCCCceeeccCccch
Confidence 999999999 99999999999999999998643 222 45889999999999999999986 688
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
-+|||+++ ++.+-.+.+|...+ .+++|+|+|-.|||||.|++++|||+...+. ..++.+|.+.
T Consensus 327 ~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nl 389 (459)
T KOG0272|consen 327 GRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNL 389 (459)
T ss_pred hheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccch
Confidence 89999998 99999999999876 7999999999999999999999999987655 6999999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
|..+.|.|. .|++ |++++.|+. +||.. ...+..+.+|+.+|.+++.+|++..+++++ ++.+.+|++
T Consensus 390 VS~Vk~~p~-~g~f-----L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 390 VSQVKYSPQ-EGYF-----LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred hhheEeccc-CCeE-----EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 999999994 7888 999999999 99944 367778889999999999999999999999 667999974
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=261.80 Aligned_cols=296 Identities=16% Similarity=0.210 Sum_probs=232.9
Q ss_pred ccccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.-.|++.|+.++..+. -+.|++++.|.++.+|++...... -..+.+.+.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs----- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS----- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence 4469999999999996 578899999999999998865432 345678899999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|..+..+ ++|++.++++.|+++++||+.+++....+
T Consensus 64 -------H~v~dv~~s--~dg~~alS~swD~~lrlWDl~~g~~t~~f--------------------------------- 101 (315)
T KOG0279|consen 64 -------HFVSDVVLS--SDGNFALSASWDGTLRLWDLATGESTRRF--------------------------------- 101 (315)
T ss_pred -------eEecceEEc--cCCceEEeccccceEEEEEecCCcEEEEE---------------------------------
Confidence 889999997 89999999999999999999998644332
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|.+++|++|.+.+++| .|++|++|++. +...+.+- -..
T Consensus 102 ----------------------------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~ 146 (315)
T KOG0279|consen 102 ----------------------------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDS 146 (315)
T ss_pred ----------------------------EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCC
Confidence 7999999999999999999999 99999999998 55555431 223
Q ss_pred cccceEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+.+.|.++.|+|+. ..+|++++.|++|++||+++.++. .. +.||.+.++.+++||||..+++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~-------------~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TT-------------FIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hc-------------cccccccEEEEEECCCCCEEec
Confidence 47899999999983 279999999999999999987543 22 3457899999999999999999
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|+ ||.+.+||++. ++.+..+.+... + .+++|+|+.-+|+.+.. ..|+|||++++..+ ..+
T Consensus 210 Ggkdg~~~LwdL~~-~k~lysl~a~~~-v---------------~sl~fspnrywL~~at~-~sIkIwdl~~~~~v-~~l 270 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNE-GKNLYSLEAFDI-V---------------NSLCFSPNRYWLCAATA-TSIKIWDLESKAVV-EEL 270 (315)
T ss_pred CCCCceEEEEEccC-CceeEeccCCCe-E---------------eeEEecCCceeEeeccC-CceEEEeccchhhh-hhc
Confidence 86 59999999985 777777764433 3 79999999766665544 56999999988443 222
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+...... + ...-......++|++||..|.+|- ++.+.+|.
T Consensus 271 ~~d~~g~-----s--------------------------------~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 271 KLDGIGP-----S--------------------------------SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccccccc-----c--------------------------------cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 1111100 0 001111456899999999999998 56688886
No 7
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-41 Score=278.40 Aligned_cols=441 Identities=43% Similarity=0.681 Sum_probs=330.0
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
.|++.|.|+++.........+.|++|.|...|.|||+|...|+|.+|..+...- -+++
T Consensus 7 ~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~----------------------ceyk 64 (460)
T COG5170 7 ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG----------------------CEYK 64 (460)
T ss_pred hhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc----------------------cchh
Confidence 589999999999999899999999999999999999999999999998664321 1788
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc-cc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (501)
+.+.|++|++||+|++++++++.|+.|.|....+-..++..+.|++|++|.+....++.+.+.+.... ...+ .+
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~-----~~~~~~g 139 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS-----FHSPMGG 139 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc-----cccccCC
Confidence 99999999999999999999999999999854445678888899999999998776544433222210 0000 00
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccC---ceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 248 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~ 248 (501)
.+.. ...+++-.+.. .....+.+.+...|...+.+++|+.|.+.+++++|=.|.+|+++.
T Consensus 140 ~~~s-----------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i 202 (460)
T COG5170 140 PLTS-----------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEI 202 (460)
T ss_pred CcCC-----------------HHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccc
Confidence 0000 00111111111 112334555657899999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
...+..+++++|..+.....-|++..|+|..++.+...+..|.|++-|+|+..++....+.++. ...+....++.+-..
T Consensus 203 ~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivs 281 (460)
T COG5170 203 IDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVS 281 (460)
T ss_pred cCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhh
Confidence 8899999999999998888999999999998789999999999999999998888877777776 556666667777788
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.|..+.|+++|+||++.+..++++||++....++.++..|......+++.|++++|++...+.||.|.+.+.+|+..+..
T Consensus 282 SISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 282 SISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred hhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 99999999999999999889999999999899999999999999999999999999999999999999999999999888
Q ss_pred EEEecCCCCcc----eEEEecccCc---ccceeeccCCccccCccc-eeeeecccceeeccccCCcccccccCCCeEEEE
Q 010801 409 RIFSHGVGSAG----GITVEAGKNE---NRKPILQAAPRARRSSLS-NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLA 480 (501)
Q Consensus 409 ~iwd~~~~~~~----~~~~~~~~~~---v~~~~~~~~~~~~~~~~~-~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~ 480 (501)
-||-+.+.... +..+..+..+ +.+..-+.........-. -..+.+.+|..+- ..-....++...|.+-.
T Consensus 362 giyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~ilh~s 438 (460)
T COG5170 362 GIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKILHRS 438 (460)
T ss_pred eeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHHHhhc
Confidence 88875442111 1222222111 111111100000000000 0111111111000 01112234566888999
Q ss_pred EccCCCEEEEeeCCeEEEEeC
Q 010801 481 WHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~~~~~~i~~~ 501 (501)
|||.++.+|++..++++||++
T Consensus 439 Whp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 439 WHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred cCCcccceeeeecCceEEEec
Confidence 999999999999999999974
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.4e-38 Score=278.71 Aligned_cols=374 Identities=16% Similarity=0.226 Sum_probs=279.8
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
+.|.++++..++ .|..-|+|+.|+|||.++|+++.||.|.+||-.+++..
T Consensus 176 eGPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v---------------------- 225 (603)
T KOG0318|consen 176 EGPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------- 225 (603)
T ss_pred eCCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE----------------------
Confidence 344556665555 57889999999999999999999999999999988753
Q ss_pred ceeeEeeec---cCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccc
Q 010801 90 EYRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 90 ~~~~~~~~~---~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
..+. +|+ +.|.+|+|+ ||++.|++++.|.+++|||+.+.++.....+...-
T Consensus 226 -----g~l~~~~aHk------------GsIfalsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v------- 279 (603)
T KOG0318|consen 226 -----GELEDSDAHK------------GSIFALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV------- 279 (603)
T ss_pred -----EEecCCCCcc------------ccEEEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCch-------
Confidence 4455 788 999999998 89999999999999999999999887766443211
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd 245 (501)
....+.+.+- ...+.+. ..+|.+.+++..... .++.+ .+|...|++++.+|++++|++| .||.|.-|+
T Consensus 280 ---~dqqvG~lWq--kd~lItV--Sl~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 280 ---EDQQVGCLWQ--KDHLITV--SLSGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred ---hceEEEEEEe--CCeEEEE--EcCcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 1111111111 1111222 237788888887643 55555 7999999999999999999999 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
..++. .-+. .-..|...|.+++-+..+ .+++.+.|.++++.++..+..... ...+.
T Consensus 349 ~~~g~-~~~~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l------------- 404 (603)
T KOG0318|consen 349 SGSGT-SDRL------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL------------- 404 (603)
T ss_pred cCCcc-cccc------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec-------------
Confidence 98443 3221 126799999999988754 477889999999999876543221 11121
Q ss_pred cccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
......++..+++.+++...++.|.+..-. +.+.++...-.. .+++++|++..+|.|+.|
T Consensus 405 -g~QP~~lav~~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~----------------s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 405 -GSQPKGLAVLSDGGTAVVACISDIVLLQDQ---TKVSSIPIGYES----------------SAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred -CCCceeEEEcCCCCEEEEEecCcEEEEecC---Ccceeecccccc----------------ceEEEcCCCCEEEEeccc
Confidence 122348888888877777767667776532 222222211111 589999999999999999
Q ss_pred CeEEEEecCCCC-cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc---ccccccCCCeEEEE
Q 010801 406 NLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH---ELSYNLSSKLLHLA 480 (501)
Q Consensus 406 g~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~---~~~~~~~~~i~~~~ 480 (501)
|.|+||.+..+. .....+..|..+++.++++| ++.+ ||.+...++ .+|+..... ....-|+.+|++++
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a 537 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA 537 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE
Confidence 999999998764 33457889999999999999 8888 999999999 999554332 23446899999999
Q ss_pred EccCCCEEEEee-CCeEEEEeC
Q 010801 481 WHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~-~~~~~i~~~ 501 (501)
|+|+..++|+|+ +..++||+.
T Consensus 538 WsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eCCCceEEEeccccceEEEEEc
Confidence 999999999999 666999973
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=292.59 Aligned_cols=393 Identities=14% Similarity=0.132 Sum_probs=286.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+.+|..++|+|.|..||+|+.||.|+|||+..+.+ ...|+||.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~---------------------------th~fkG~g-------- 147 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC---------------------------THSFKGHG-------- 147 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE---------------------------EEEecCCC--------
Confidence 4899999999999999999999999999999997654 48899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccce-eeeec--------cCCCcc---cccccc-------cccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKE--------MDHFPF---VSSENT-------LLAE 170 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~-~~~~~--------~~~~~~---~~~~~~-------~~~~ 170 (501)
+.|.++.|.|..+...|++|..|+++++||+++... ..... ....++ +-.+++ .+..
T Consensus 148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 999999999777777789999999999999985432 11111 011000 000000 0000
Q ss_pred cC----------ccccCCCCC-----CcccccceeccCcceEEEeccCc-------------------------------
Q 010801 171 KN----------FMNEHNPPS-----FAHGYHLEWTENMATKIANVGNS------------------------------- 204 (501)
Q Consensus 171 ~~----------~~~~~~~~~-----~~~~~~~~~~~~~~i~~w~~~~~------------------------------- 204 (501)
.. +-.....++ ..++.++ ...|.+++|+.+..
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta--G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITA--GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEe--cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 00 000000000 0011110 11222222322210
Q ss_pred ------------e-----------------------------eeeeeE---------eecCCcccceEEEEecCCCCEEE
Q 010801 205 ------------V-----------------------------HARCQK---------VYPHAHDFNINSISNNSDCETFV 234 (501)
Q Consensus 205 ------------~-----------------------------~~~~~~---------~~~~~~~~~v~~l~~~~~~~~l~ 234 (501)
. ...+++ .+..+|...|.++....+|-+|+
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEE
Confidence 0 000001 13378999999998666778999
Q ss_pred EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecc
Q 010801 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
+| .|+++++|.++........ .....+|.+.|.+++++..+..+|++++.|+++++|++...+..... -.+
T Consensus 382 t~sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~-~~~--- 453 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP-IVL--- 453 (775)
T ss_pred EecCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc-cee---
Confidence 99 9999999998522211111 11357899999999998888789999999999999999873322110 111
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
..+.....|...|++++++|+.++||+|+ |.+.+||++. +.....++.+|...+ +++.|
T Consensus 454 ----~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGv---------------w~V~F 513 (775)
T KOG0319|consen 454 ----TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGV---------------WCVSF 513 (775)
T ss_pred ----hhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccce---------------EEEEe
Confidence 11222356889999999999999999997 5999999998 489999999999876 89999
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccc
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS 469 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~ 469 (501)
+|..+.++|+|.|++|+||.+++.+++ +++.+|...|..+.|.. +++. |++++.||- ++| +.++....+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhh
Confidence 999999999999999999999999776 99999999999999987 7777 999999999 999 555667778
Q ss_pred cccCCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 470 YNLSSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 470 ~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
..|+.+|.+++-+|.+.++++|+.|+ +.+|
T Consensus 586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 89999999999999999999999777 4444
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.6e-38 Score=253.52 Aligned_cols=290 Identities=14% Similarity=0.215 Sum_probs=236.3
Q ss_pred CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 44 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
.-+||++++|-+||+|...+|.+ ..+++-.+ ..|+.+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C---------------------------~rTiqh~d------------sqVNrLeiT- 49 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC---------------------------SRTIQHPD------------SQVNRLEIT- 49 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE---------------------------EEEEecCc------------cceeeEEEc-
Confidence 45899999999999999998865 35666545 889999997
Q ss_pred cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 124 ~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
|+++.|++++. ..||+||+.++..
T Consensus 50 -pdk~~LAaa~~-qhvRlyD~~S~np------------------------------------------------------ 73 (311)
T KOG0315|consen 50 -PDKKDLAAAGN-QHVRLYDLNSNNP------------------------------------------------------ 73 (311)
T ss_pred -CCcchhhhccC-CeeEEEEccCCCC------------------------------------------------------
Confidence 78888888876 4699999998762
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.++..| .+|...|.++.|..+|+.+++| +||+++|||++. ..+.+ ...|..+|+++..+|+. ..
T Consensus 74 ----~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR--------~~~~~spVn~vvlhpnQ-te 138 (311)
T KOG0315|consen 74 ----NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQR--------NYQHNSPVNTVVLHPNQ-TE 138 (311)
T ss_pred ----CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccch--------hccCCCCcceEEecCCc-ce
Confidence 233344 7999999999999999999999 999999999994 33433 45577999999999998 89
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeC----
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM---- 357 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~---- 357 (501)
|++|..+|.|++||+.+..... ..+.. ....|.++...|||.+++++.+ |..++|++-.
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred EEeecCCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence 9999999999999998864321 11111 1368999999999999999977 9999999854
Q ss_pred -CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 358 -DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
.-.++..++.|...+ ..+-+|||+++||++|.|.+++||+.++.-.+...+++|...++..+|+
T Consensus 203 s~l~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ccceEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 123556677777755 7899999999999999999999999998755678899999999999999
Q ss_pred cCCccccCccceeeeecccce-eecc--ccCCcccccccCCCeEEEEEc
Q 010801 437 AAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~~~~~~i~~~~~s 482 (501)
. ++.+ |++|+.|+. ++|+ .++.+....+|-+...+++.+
T Consensus 268 ~--dg~Y-----lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 268 A--DGEY-----LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred c--CccE-----EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8 8898 999999999 9994 445556666777766666543
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-37 Score=256.12 Aligned_cols=288 Identities=12% Similarity=0.196 Sum_probs=237.9
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.-+|...|.++.|++|+++|++++.||.+.|||..+..+. ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------ 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------ 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence 3469999999999999999999999999999998766442 2222223
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.-|...+|+ |.|++++.|+.|+...||++........
T Consensus 98 ------~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~----------------------------------- 134 (343)
T KOG0286|consen 98 ------SWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGN----------------------------------- 134 (343)
T ss_pred ------eeEEEEEEC--CCCCeEEecCcCceeEEEeccccccccc-----------------------------------
Confidence 778999998 7899999999999999999885421100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
....+. +.+|.+.+.|+.|-+|+ .|+++ .|.+..+||+++ ++.... +.+|
T Consensus 135 -------------------~~v~r~-l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~-g~~~~~-------f~GH 185 (343)
T KOG0286|consen 135 -------------------VRVSRE-LAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET-GQQTQV-------FHGH 185 (343)
T ss_pred -------------------ceeeee-ecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc-ceEEEE-------ecCC
Confidence 011122 27999999999999876 56666 999999999994 444443 7899
Q ss_pred ccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
.+.|.+++++| ++ +.+++|+-|+..++||+|.+... +.|.+ |...|+++.|.|+|.-+++|
T Consensus 186 ~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATG 247 (343)
T ss_pred cccEEEEecCCCCC-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeec
Confidence 99999999999 66 99999999999999999998544 45544 78999999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+| ++.++||++. .+.+..+.. .. .++++++++||..|++|++|..|.++.+||.-.+ +....+.
T Consensus 248 SDD~tcRlyDlRa-D~~~a~ys~-~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~ 312 (343)
T KOG0286|consen 248 SDDATCRLYDLRA-DQELAVYSH-DS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA 312 (343)
T ss_pred CCCceeEEEeecC-CcEEeeecc-Cc------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence 76 9999999997 777777763 22 2344589999999999999999999999998877 4568999
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|.+.|.++..+| +|.. +++|+-|.. +||
T Consensus 313 GHeNRvScl~~s~--DG~a-----v~TgSWDs~lriW 342 (343)
T KOG0286|consen 313 GHENRVSCLGVSP--DGMA-----VATGSWDSTLRIW 342 (343)
T ss_pred ccCCeeEEEEECC--CCcE-----EEecchhHheeec
Confidence 9999999999999 7777 999999999 998
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.5e-37 Score=252.43 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=242.6
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+..++++||. +.|.++.|+ +|.++++++|.||.+.|||..+......+
T Consensus 44 ~~~~rr~LkGH~------------~Ki~~~~ws--~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------- 93 (343)
T KOG0286|consen 44 QMRTRRTLKGHL------------NKIYAMDWS--TDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------- 93 (343)
T ss_pred eeeeEEEecccc------------cceeeeEec--CCcCeEEeeccCCeEEEEEcccccceeEE----------------
Confidence 344557899999 999999998 89999999999999999998876533332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
+-....|..++|+|.|+++++| -|+...||++..
T Consensus 94 ---------------------------------------------pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 94 ---------------------------------------------PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred ---------------------------------------------ecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 2235678899999999999999 999999999984
Q ss_pred C--CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec
Q 010801 249 S--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 249 ~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
. ....+. ...+.+|.+.+.++.|-+| ..|++++.|.+..+||+.+++.. ..| .||
T Consensus 129 ~d~~g~~~v----~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f-------------~GH 185 (343)
T KOG0286|consen 129 RDAEGNVRV----SRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVF-------------HGH 185 (343)
T ss_pred cccccccee----eeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEe-------------cCC
Confidence 3 111111 1248899999999999986 58999999999999999998654 344 458
Q ss_pred ccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 327 IASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 327 ~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+.|.++.++| +++.+++|+ |+..+|||++. +...++|.+|+..+ +++.|.|+|.-+++|++
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSD 249 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCC
Confidence 89999999999 999999985 79999999996 89999999999876 79999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEE
Q 010801 405 SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHL 479 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~ 479 (501)
|++.++||+...+++ ..+. .-..+|++++|+. .|++ |..|-.|.. .+|+. ++....+.+|+.+|.++
T Consensus 250 D~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~--SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 250 DATCRLYDLRADQEL-AVYSHDSIICGITSVAFSK--SGRL-----LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CceeEEEeecCCcEE-eeeccCcccCCceeEEEcc--cccE-----EEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 999999999987554 3333 3345789999998 7888 888888888 99933 46777888999999999
Q ss_pred EEccCCCEEEEee-CCeEEEEe
Q 010801 480 AWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~-~~~~~i~~ 500 (501)
..+|||.-|++|+ +..+.||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999 66699995
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=273.84 Aligned_cols=280 Identities=20% Similarity=0.321 Sum_probs=242.1
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-.|..|.|.|+|+.|++|+..|.+.+|+.. .+.+...+++|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHD---------- 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHD---------- 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhc----------
Confidence 4589999999999999999999999999965 344556789999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.++.|+ +++.++++|+.+|.|+.|+..-...+...
T Consensus 139 --s~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnnVk~~~-------------------------------------- 176 (464)
T KOG0284|consen 139 --SPVRTMKWS--HNGTWMISGDKGGMIKYWQPNMNNVKIIQ-------------------------------------- 176 (464)
T ss_pred --ccceeEEEc--cCCCEEEEcCCCceEEecccchhhhHHhh--------------------------------------
Confidence 999999998 89999999999999999998755432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...|++++|+|....|+++ +||+|+|||.....+... +.+|.-.|
T Consensus 177 -----------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------L~GHgwdV 225 (464)
T KOG0284|consen 177 -----------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------LRGHGWDV 225 (464)
T ss_pred -----------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------eccCCCCc
Confidence 3556899999999998899999 999999999985544332 78999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.+++|+|.. .++++++.|..|++||.++++.+ ..+. +|+..|..+.|+|++++|++++ |..
T Consensus 226 ksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~tlh-------------~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 226 KSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----ATLH-------------GHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred ceeccCCcc-ceeEEccCCceeEeecCCCcchh----hhhh-------------hccceEEEEEEcCCCCeeEEccCCce
Confidence 999999998 99999999999999999999754 2322 3678999999999999999986 699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
++++|+++ .+.++++++|...+ +++.|+| ...+|.+|+.||.|..|.+...+.+...-.+|..
T Consensus 288 ~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 288 CKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred EEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 99999996 88899999999876 8999999 4668889999999999999866666677889999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
.|+++++.| -|.+ |++|+.|.. +.|..
T Consensus 352 ~iwsl~~hP--lGhi-----l~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHP--LGHI-----LATGSNDRTVRFWTR 379 (464)
T ss_pred ceeeeeccc--ccee-----EeecCCCcceeeecc
Confidence 999999999 6777 999999999 99933
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=273.83 Aligned_cols=379 Identities=15% Similarity=0.170 Sum_probs=291.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|.++.|+.|.++|++|+.|-+++||.++..+.. ....+.+|.
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------- 189 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------- 189 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC-------
Confidence 468999999999999999999999999999999876542 456789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc--ceeee---------eccC-CCcc-----ccc-ccccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKI---------KEMD-HFPF-----VSS-ENTLLAE 170 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~--~~~~~---------~~~~-~~~~-----~~~-~~~~~~~ 170 (501)
+.|-..-|. .+..-+++.+.||.+.+|..... ..... .+.. ..+. ... ..+.+-+
T Consensus 190 -----d~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 190 -----DYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN 262 (893)
T ss_pred -----cceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence 889888886 77888999999999999987621 10000 0000 0000 000 0011111
Q ss_pred ---cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEE
Q 010801 171 ---KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN 245 (501)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd 245 (501)
..+....+.+....++.+-- +|...++.+.. ..++..+ .-...+|..++|+..|..|+.| .-|.+-+|+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFs--sG~f~LyelP~---f~lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFS--SGEFGLYELPD---FNLIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred ccccceeeeeccCCceEEEEEec--CCeeEEEecCC---ceEEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 34555556666666666553 66777777664 2333333 3345789999999999999997 568999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
..+..-.++ .++|...+++++++||| +++++|+.||.|++||.+.+-.. .+|+ .
T Consensus 337 WqsEsYVlK--------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTFt-------------e 390 (893)
T KOG0291|consen 337 WQSESYVLK--------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTFT-------------E 390 (893)
T ss_pred eeccceeee--------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEec-------------c
Confidence 985444443 68999999999999999 99999999999999999887433 3444 4
Q ss_pred cccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
|+..|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++........ .+++..|.|.++++|+.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQ 455 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceee--------------eEEEEcCCCCEEEeecc
Confidence 789999999999999999886 79999999985 788888876554321 58999999999999998
Q ss_pred CC-eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC--cccccccCCCeEEEE
Q 010801 405 SN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HELSYNLSSKLLHLA 480 (501)
Q Consensus 405 dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~--~~~~~~~~~~i~~~~ 480 (501)
|. .|++|++++| ++.-.+.+|.+||.++.|+| .+.. |++++-|.+ ++|+.-.. ..+...+...+++++
T Consensus 456 d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs 527 (893)
T KOG0291|consen 456 DSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS 527 (893)
T ss_pred ceEEEEEEEeecC-eeeehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEE
Confidence 75 5999999999 55589999999999999999 5666 999999999 99944433 455667888999999
Q ss_pred EccCCCEEEEeeCC-eEEEEeC
Q 010801 481 WHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~~~-~~~i~~~ 501 (501)
|+|||+-||+++-| .|-+|++
T Consensus 528 frPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEh
Confidence 99999999999955 6999873
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=250.21 Aligned_cols=250 Identities=19% Similarity=0.293 Sum_probs=205.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|...|+.+..++||++.++++.|+++++||+.+++. ...|.||.
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~-------- 105 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHT-------- 105 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecC--------
Confidence 5999999999999999999999999999999998854 47899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +|+..+++|+.|++|++|++.++.......
T Consensus 106 ----~dVlsva~s--~dn~qivSGSrDkTiklwnt~g~ck~t~~~----------------------------------- 144 (315)
T KOG0279|consen 106 ----KDVLSVAFS--TDNRQIVSGSRDKTIKLWNTLGVCKYTIHE----------------------------------- 144 (315)
T ss_pred ----CceEEEEec--CCCceeecCCCcceeeeeeecccEEEEEec-----------------------------------
Confidence 889999998 899999999999999999987654322210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
..+.+.|.|+.|+|+ ..+|+++ .|++|++||++ +.+... .+.+|
T Consensus 145 -------------------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~gh 191 (315)
T KOG0279|consen 145 -------------------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIGH 191 (315)
T ss_pred -------------------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------ccccc
Confidence 244789999999998 6788888 99999999999 444333 37899
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
++.++.++++||| .+.++|+.||.+.+||++.++.+ ..++ |...|.+++|+|+.-+|+.+.
T Consensus 192 ~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~--------------a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 192 SGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLE--------------AFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Eecc--------------CCCeEeeEEecCCceeEeecc
Confidence 9999999999999 99999999999999999998754 3333 357899999999998998888
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+..|+|||+.+ +..+..++....... .......| .+++|++||..|++|-.|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~-~~~v~~l~~d~~g~s--~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLES-KAVVEELKLDGIGPS--SKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccc-hhhhhhccccccccc--cccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88899999986 777766653322110 00000111 689999999999999999999999875
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=244.19 Aligned_cols=273 Identities=16% Similarity=0.256 Sum_probs=225.6
Q ss_pred Ccccc-ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h-~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..++| .+.|+.+.+.||++.||+|+. ..||+||+.++... ++.++.+|+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------------------Pv~t~e~h~---- 83 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------------------PVATFEGHT---- 83 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-------------------------ceeEEeccC----
Confidence 45667 458999999999999999885 58999999987542 778999999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|++|.|. .+|+++++|+.||+++|||++...+.+.
T Consensus 84 --------kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~--------------------------------- 120 (311)
T KOG0315|consen 84 --------KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRN--------------------------------- 120 (311)
T ss_pred --------CceEEEEEe--ecCeEEEecCCCceEEEEeccCcccchh---------------------------------
Confidence 889999997 8999999999999999999998543332
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|.++|+++..+|+...|++| .+|.|++||+. ...+.... ++
T Consensus 121 -----------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iP 164 (311)
T KOG0315|consen 121 -----------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IP 164 (311)
T ss_pred -----------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CC
Confidence 3667899999999999999999 99999999999 33333221 44
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.....|.++...|+| .+++.+...|...+|++-+.... . .-.+...++.|.+.+..+.+|||+++||+
T Consensus 165 e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEe
Confidence 556789999999999 99999999999999999774221 1 11223346778999999999999999998
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
++ |.+++||+++..-+....+++|...+ ++++||.||+||++|+.|+.+++|++..++. ....
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCce-eeec
Confidence 85 69999999986336677788888776 8999999999999999999999999999954 4778
Q ss_pred ecccCcccceeec
Q 010801 424 EAGKNENRKPILQ 436 (501)
Q Consensus 424 ~~~~~~v~~~~~~ 436 (501)
.+|..+..+++..
T Consensus 297 ~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 297 QGHHKAAVCVALN 309 (311)
T ss_pred CCcccccEEEEee
Confidence 8888877666553
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-37 Score=286.01 Aligned_cols=266 Identities=21% Similarity=0.289 Sum_probs=219.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhcc-----cc-ccCCCCceeeEeeeccCCcchh
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM-----DF-TSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
...++|..|++|+..||.|..|-.|++|.+...+..++.+. +.+.... .. ............++-||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~--~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~---- 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA--SDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS---- 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch--hhhccccccccchhhhhccccCCceeEEeecCC----
Confidence 56799999999999999999999999999985443211111 1111110 00 000111222345588999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
++|....|+ |+.++|+++|.|+++|+|.+.+..+...
T Consensus 452 --------GPVyg~sFs--Pd~rfLlScSED~svRLWsl~t~s~~V~--------------------------------- 488 (707)
T KOG0263|consen 452 --------GPVYGCSFS--PDRRFLLSCSEDSSVRLWSLDTWSCLVI--------------------------------- 488 (707)
T ss_pred --------Cceeeeeec--ccccceeeccCCcceeeeecccceeEEE---------------------------------
Confidence 999999998 8899999999999999999998664433
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
| .+|..+|+++.|+|.|-+||+| .|++-++|... ...+.++ +.
T Consensus 489 ---------------------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fa 532 (707)
T KOG0263|consen 489 ---------------------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FA 532 (707)
T ss_pred ---------------------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hc
Confidence 3 7999999999999999999999 99999999988 4455554 78
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|-+.|.|+.|+|+. +++++|+.|.+|++||+.++... ++|.+ |.++|.+++|||+|++|++
T Consensus 533 ghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~G-------------H~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIFTG-------------HKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEecC-------------CCCceEEEEEcCCCceEee
Confidence 999999999999998 99999999999999999998754 66655 7899999999999999999
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+ |+.|.+||+.. ++++..+.+|.+.+ .++.|+.||..||+|+.|++|++||+...
T Consensus 595 g~ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 96 59999999986 89999999997665 79999999999999999999999999754
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=257.92 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=244.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|..+|+.+-|.|+-..+|++++|++|++||..+++.. ..++||+
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------------~~LrGHt------- 150 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE---------------------------RSLRGHT------- 150 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhh---------------------------hhhhccc-------
Confidence 368899999999999999999999999999999988754 7899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+|+|. ..|+++++++.|-.+++||.++..
T Consensus 151 -----~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~---------------------------------------- 183 (406)
T KOG0295|consen 151 -----DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFF---------------------------------------- 183 (406)
T ss_pred -----cceeEEEEe--cCccEEEecCCccchhheeHHHHH----------------------------------------
Confidence 889999997 789999999999999999988632
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+|++.. .+|...|.++.|-|.|.+++++ .|.+|++|++. .+-++++ +.+|.
T Consensus 184 -------------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~ 235 (406)
T KOG0295|consen 184 -------------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHS 235 (406)
T ss_pred -------------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCch
Confidence 122222 6899999999999999999999 99999999999 6667664 89999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---------
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--------- 338 (501)
..|..++.+.|| .++++++.|.+|++|-+.+++.. ..+ ++|..+|.+++|-|.
T Consensus 236 ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~l-------------R~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 236 EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AEL-------------REHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hhh-------------hccccceEEEEecccccCcchhhc
Confidence 999999999999 99999999999999999887432 222 346678888888663
Q ss_pred ------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 339 ------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 339 ------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
++++++++ |++|++||+.+ +.++.++.+|...+ .+++|+|.|+||+++.+|+++++|
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEE
Confidence 35788886 69999999998 99999999999987 799999999999999999999999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
|+++++++ +++++|...+.++.|....+ + +++|+-|.. ++|
T Consensus 362 dl~~~~cm-k~~~ah~hfvt~lDfh~~~p--~-----VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 362 DLKNLQCM-KTLEAHEHFVTSLDFHKTAP--Y-----VVTGSVDQTVKVW 403 (406)
T ss_pred Eeccceee-eccCCCcceeEEEecCCCCc--e-----EEeccccceeeee
Confidence 99999665 88999999999999987533 4 899999888 888
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=275.04 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=215.2
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
++.+++|+.++ .+|++++.. ..+.+..|-|.+++++.| ..|.+.+||+.+ ...+.. .++|.+.|+
T Consensus 393 ~~SikiWn~~t---~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Et-------i~AHdgaIW 458 (888)
T KOG0306|consen 393 GESIKIWNRDT---LKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVET-------IRAHDGAIW 458 (888)
T ss_pred CCcEEEEEccC---cceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhh-------hhcccccee
Confidence 45899999986 678887722 378899999999999999 999999999994 334432 678999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
+++.+||+ ..+++|+.|.+|++||..--.... ...+.+..+. ...-..+..|.++.+||||++|+++ -|++
T Consensus 459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~------~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH------TRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeecc------ceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 99999999 999999999999999975321100 0001111100 0011225689999999999999998 4799
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
++||-+++ -+..-.+.||.-++ .++..|||+++++|||.|..|+||-++-|.+. +.+.+|.+.
T Consensus 532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdDS 594 (888)
T KOG0306|consen 532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDDS 594 (888)
T ss_pred EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccCc
Confidence 99999987 88888899999876 89999999999999999999999999999776 889999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeC-CeEEEEe
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i~~ 500 (501)
|.++.|.| ...+ +.++|.|+. +-|+-. +.+..+.+|...|.+++.+|+|.++++++. -.+.+|.
T Consensus 595 vm~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 595 VMSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eeEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999 4555 899999999 999444 566778899999999999999999999995 5699985
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=269.48 Aligned_cols=374 Identities=13% Similarity=0.182 Sum_probs=285.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.-+.+|.|+.|||||+++|+|. .+.+.||...+... ...+.+...+++.+|-
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~-------------------~~~~pFvl~r~~~g~f-------- 145 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIK-------------------NEFNPFVLHRTYLGHF-------- 145 (893)
T ss_pred eecCccceEEECCCCcEEEEEe-cceeEEEecCcchh-------------------cccCcceEeeeecCCc--------
Confidence 3478999999999999999886 46899999765432 0234566778888998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+|.|+ .|.++|++|+.|.++++|.++..+-....... -+.+.++.+-+..+..-+++.
T Consensus 146 ----ddi~si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-----------gHkd~VvacfF~~~~~~l~tv- 207 (893)
T KOG0291|consen 146 ----DDITSIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-----------GHKDYVVACFFGANSLDLYTV- 207 (893)
T ss_pred ----cceeEEEec--cCCceEEeccccceEEEEEeccccccceEecc-----------CCCcceEEEEeccCcceEEEE-
Confidence 889999998 78899999999999999999876542222111 112233333333333333333
Q ss_pred eccCcceEEEeccCce-----------------------------ee-eeeEeecCCcccceEEEEecCCCCEEEEE-cC
Q 010801 190 WTENMATKIANVGNSV-----------------------------HA-RCQKVYPHAHDFNINSISNNSDCETFVSA-DD 238 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~-----------------------------~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d 238 (501)
..+|.+.+|..+... .. ...+.++......|++.+|++....|++| ..
T Consensus 208 -skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 208 -SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred -ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 348888888877110 00 11233445556889999999999999999 99
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEEccCCcccccccceeecccccC
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
|...+|.+. .-.+++. +.-...+|..++|+..| ..|+.|+.. |.+.+|+.+... .+++.
T Consensus 287 G~f~LyelP-~f~lih~-------LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs------YVlKQ----- 346 (893)
T KOG0291|consen 287 GEFGLYELP-DFNLIHS-------LSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES------YVLKQ----- 346 (893)
T ss_pred CeeEEEecC-CceEEEE-------eecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc------eeeec-----
Confidence 999999998 4455543 33344678999999999 999998875 899999998764 33443
Q ss_pred CCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 318 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
.+|...+++++++|||+++|+|. ||.|+|||... +-++.+|..|...+ +.++|+..|
T Consensus 347 ------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g 404 (893)
T KOG0291|consen 347 ------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARG 404 (893)
T ss_pred ------cccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecC
Confidence 46788999999999999999995 59999999986 88999999999876 899999999
Q ss_pred cEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccCCccccCccceeeeecccce--eec--cccCCcccccc
Q 010801 397 LHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYN 471 (501)
Q Consensus 397 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~iw--~~~~~~~~~~~ 471 (501)
+.|++.+-||+|+.||+...+.- .++.... -...+++.-| .|.+ ++.|+.|.- .+| .+++.+-.+.+
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNf-RTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNF-RTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred CEEEEeecCCeEEeeeeccccee-eeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999999876433 4444332 2334455544 5666 777777777 888 77778888889
Q ss_pred cCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 472 LSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 472 ~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
|+++|.+++|+|+++.||+++ +..+.+|+
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEE
Confidence 999999999999999999999 67799997
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-35 Score=260.99 Aligned_cols=332 Identities=16% Similarity=0.252 Sum_probs=260.1
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|..+|.+.+|+|-.. .+|+|+.|-..++|++...... +.....|+. ....-+
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh--------------~~~~~~------- 229 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRH--------------CIREGG------- 229 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhh--------------hhhhhc-------
Confidence 455999999999999665 8999999999999998741110 000000000 000111
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
++......|++++|+ .+|..|++|+.||.+++|+...+....
T Consensus 230 -~s~~~nkdVT~L~Wn--~~G~~LatG~~~G~~riw~~~G~l~~t----------------------------------- 271 (524)
T KOG0273|consen 230 -KSVPSNKDVTSLDWN--NDGTLLATGSEDGEARIWNKDGNLIST----------------------------------- 271 (524)
T ss_pred -ccCCccCCcceEEec--CCCCeEEEeecCcEEEEEecCchhhhh-----------------------------------
Confidence 122223779999998 899999999999999999987654221
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
+ ..|.++|.++.|+.+|.+|+++ .|+++.+||..+ +...+. +.-
T Consensus 272 --------------------------l-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~-------f~~ 316 (524)
T KOG0273|consen 272 --------------------------L-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQ-------FEF 316 (524)
T ss_pred --------------------------h-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEe-------eee
Confidence 1 6899999999999999999999 999999999983 444332 566
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|..+-..|.|-.+ ..|++++.|+.|+++-+...... +. +.+|.+.|.++.|+|.|.+|+++
T Consensus 317 ~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t-------------~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 317 HSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KT-------------FIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc----ee-------------eecccCceEEEEECCCCceEEEe
Confidence 7777678899876 57999999999999988765433 33 45588999999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC---------cEEEEEeCCCeEEEEecCC
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~s~~~dg~i~iwd~~~ 415 (501)
+| ++++||.... ......+.+|...+ ..+.|+|+| ..|++++.|++|++||+..
T Consensus 378 SdD~TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred cCCCeeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 75 9999999874 78888899998866 689999864 4799999999999999999
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC-CcccccccCCCeEEEEEccCCCEEEEee-
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN- 492 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~- 492 (501)
+.++ ..|..|..+|++++|+| ++++ +|+|+.|+. .+|+... .+.....-...|..+.|+.+|+.|.++.
T Consensus 442 gv~i-~~f~kH~~pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 442 GVPI-HTLMKHQEPVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred Ccee-EeeccCCCceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec
Confidence 9555 88999999999999999 8999 999999999 9995542 3344455566799999999999887665
Q ss_pred CCeEEEE
Q 010801 493 GNSLFFH 499 (501)
Q Consensus 493 ~~~~~i~ 499 (501)
++.+++.
T Consensus 514 d~~vcvl 520 (524)
T KOG0273|consen 514 DGSVCVL 520 (524)
T ss_pred CCCceEE
Confidence 4446654
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=246.87 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=225.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+++.|+|+|.+||+|+.|..|.+|++..... -...+++|.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs-------- 90 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS-------- 90 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc--------
Confidence 5899999999999999999999999999999775433 346678999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|..+.|. +|+..+++++.|++|+.||+++|+.....
T Consensus 91 ----gAVM~l~~~--~d~s~i~S~gtDk~v~~wD~~tG~~~rk~------------------------------------ 128 (338)
T KOG0265|consen 91 ----GAVMELHGM--RDGSHILSCGTDKTVRGWDAETGKRIRKH------------------------------------ 128 (338)
T ss_pred ----ceeEeeeec--cCCCEEEEecCCceEEEEecccceeeehh------------------------------------
Confidence 999999997 89999999999999999999998855432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|..-|+++.-+.-|..+++ + +|+++++||++ .+..+++ ....
T Consensus 129 -------------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t--------~~~k 174 (338)
T KOG0265|consen 129 -------------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKT--------FENK 174 (338)
T ss_pred -------------------------ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhc--------cccc
Confidence 688889999886666666655 6 99999999999 5555543 2235
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..++++.|...+ ..+.+|+-|+.|++||++.+... .++ .||...|+.+..+|+|.++.+-+
T Consensus 175 yqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~l-------------sGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 175 YQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YTL-------------SGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred eeEEEEEecccc-cceeeccccCceeeeccccCcce----EEe-------------ecccCceeeEEeccCCCccccccc
Confidence 678999999998 89999999999999999987644 344 45788999999999999999876
Q ss_pred CCcEEEEEeeC---CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 347 YMNLKLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 347 ~~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|.++++||++. ..+++..+.+|......-. ..++|+|+++.+.+|+.|..+++||...... ...+
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl-----------L~cswsp~~~~i~ags~dr~vyvwd~~~r~~-lykl 304 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL-----------LKCSWSPNGTKITAGSADRFVYVWDTTSRRI-LYKL 304 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhc-----------ceeeccCCCCccccccccceEEEeecccccE-EEEc
Confidence 69999999984 1344677777665432111 5799999999999999999999999875422 2233
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeC-CeEEE
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 498 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i 498 (501)
.+|...|++++|+|.+.+|.+++. ..+|+
T Consensus 305 ----------------------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 305 ----------------------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 345557788888888888777664 44554
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-35 Score=261.25 Aligned_cols=281 Identities=17% Similarity=0.299 Sum_probs=231.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+..|++++|+.+|.+||+|+.||.++||+..+... .++..|.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----------------------------~tl~~Hk-------- 276 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----------------------------STLGQHK-------- 276 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----------------------------hhhhccC--------
Confidence 3467899999999999999999999999999876643 5788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
++|.+++|+ ..|.+|++++-|+++.+||..++.......+...+ .++..+-....+....
T Consensus 277 ----gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~- 336 (524)
T KOG0273|consen 277 ----GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS- 336 (524)
T ss_pred ----CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC-
Confidence 999999997 89999999999999999999998877765443211 1223333333333222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.++.|.++.+.. .++..++ .+|.+.|.++.|+|.|.+|+++ +|++++||... ...+.. .+..|+.
T Consensus 337 --td~~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~Hsk 402 (524)
T KOG0273|consen 337 --TDGCIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQAHSK 402 (524)
T ss_pred --CCceEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhhhcc
Confidence 377788888875 5677887 7899999999999999999999 99999999988 444444 3789999
Q ss_pred ceEEEEEecCCC--------cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 269 VITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 269 ~v~~v~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.|..+.|+|.|+ ..+++++.|++|++||+..+... ..+.. |..+|.+++|+|+|+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGR 465 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCc
Confidence 999999999762 47999999999999999988654 44433 688999999999999
Q ss_pred EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|+|+|+ ||.|.+|++++ ++.++.+.+.... ..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 466 ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999997 69999999997 8888888766552 689999999999999999999998874
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.4e-36 Score=253.04 Aligned_cols=301 Identities=17% Similarity=0.248 Sum_probs=243.2
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
+.|+|+....+- .....|.+-|.|+++.|..+++++|+.|++|+|||+.+|+.
T Consensus 133 ~rPeWHapwKl~----rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----------------------- 185 (460)
T KOG0285|consen 133 PRPEWHAPWKLY----RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----------------------- 185 (460)
T ss_pred CCccccCcceeh----hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------
Confidence 456676555332 22347999999999999999999999999999999998875
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..++.||. ..|..++++ +--.++.+++.|+.|+.||++.++.++..
T Consensus 186 ----kltltGhi------------~~vr~vavS--~rHpYlFs~gedk~VKCwDLe~nkvIR~Y---------------- 231 (460)
T KOG0285|consen 186 ----KLTLTGHI------------ETVRGVAVS--KRHPYLFSAGEDKQVKCWDLEYNKVIRHY---------------- 231 (460)
T ss_pred ----EEeecchh------------heeeeeeec--ccCceEEEecCCCeeEEEechhhhhHHHh----------------
Confidence 37899999 889999998 45569999999999999999988755432
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
.+|-+.|.|++.+|.-..|++| +|.++++||+++
T Consensus 232 ---------------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 232 ---------------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred ---------------------------------------------ccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 7999999999999999999999 999999999994
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
. ..+.. +.+|..+|..+.+.|-. ..+++|+.|++|++||++.++.. ..+ ..|..
T Consensus 267 r-~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkk 320 (460)
T KOG0285|consen 267 R-ASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKK 320 (460)
T ss_pred c-ceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccc
Confidence 4 44443 78999999999999987 78999999999999999998533 222 33678
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.+.+++.+|....+|+++-..|+-|++.. +..++.+.+|...+ ..++...|+ ++++|+++|.+
T Consensus 321 svral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSI 383 (460)
T ss_pred eeeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEE
Confidence 89999999999999998878999999985 88888899988765 678888776 78899999999
Q ss_pred EEEecCCCCcceEEEe--------cccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc
Q 010801 409 RIFSHGVGSAGGITVE--------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE 467 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~ 467 (501)
.+||.+++... +..+ .....|.+.+|.. .+.. |++|..|+. ++|.-++...
T Consensus 384 ~fwdwksg~ny-Q~~~t~vqpGSl~sEagI~as~fDk--tg~r-----lit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 384 MFWDWKSGHNY-QRGQTIVQPGSLESEAGIFASCFDK--TGSR-----LITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred EEEecCcCccc-ccccccccCCccccccceeEEeecc--cCce-----EEeccCCcceEEEecccccC
Confidence 99999987433 2221 1233455566654 3444 788888888 8886554443
No 25
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=257.43 Aligned_cols=287 Identities=16% Similarity=0.276 Sum_probs=239.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+-+.||++|+|||+|+.|.+..||++.... ..+...++.||.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~-------- 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS-------- 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc--------
Confidence 589999999999999999999999999999977442 356778899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.+|..|.|+ ||+++|++++.|..+++||+.+|......
T Consensus 270 ----~~V~yi~wS--PDdryLlaCg~~e~~~lwDv~tgd~~~~y------------------------------------ 307 (519)
T KOG0293|consen 270 ----QPVSYIMWS--PDDRYLLACGFDEVLSLWDVDTGDLRHLY------------------------------------ 307 (519)
T ss_pred ----CceEEEEEC--CCCCeEEecCchHheeeccCCcchhhhhc------------------------------------
Confidence 999999998 89999999999999999999998754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC-cc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 267 (501)
..++...+.+++|.|||..+++| .|+++..||++ +. .... .++ ..
T Consensus 308 ------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn-~~~~-------W~gvr~ 354 (519)
T KOG0293|consen 308 ------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GN-ILGN-------WEGVRD 354 (519)
T ss_pred ------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cc-hhhc-------cccccc
Confidence 14566889999999999999999 99999999998 33 2222 122 23
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
..|.+++..+|| +.+++.+.|..|++++..+.... ..... ..+|++.+.|.|++++++. .
T Consensus 355 ~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 355 PKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcc
Confidence 568999999999 98988899999999998765322 23333 3589999999999999887 4
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+..+++||++ +.+.+..+.||...... ..-||.. +..++++||+|+.|+||+..++ .+..++.+
T Consensus 416 ~qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 416 DQEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred cCeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecC
Confidence 6999999998 58889999998875321 3456655 4589999999999999999998 55699999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
|...|.+++++|. +..+ +|+++.||+ +||..+
T Consensus 481 Hs~~vNcVswNP~-~p~m-----~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 HSKTVNCVSWNPA-DPEM-----FASASDDGTIRIWGPS 513 (519)
T ss_pred CcceeeEEecCCC-CHHH-----hhccCCCCeEEEecCC
Confidence 9999999999997 6677 899999999 999655
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-37 Score=263.60 Aligned_cols=275 Identities=19% Similarity=0.274 Sum_probs=232.0
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+..|..|+|. |+|+.|++|+..|.+.+|+........+
T Consensus 96 kc~V~~v~Wt--PeGRRLltgs~SGEFtLWNg~~fnFEti---------------------------------------- 133 (464)
T KOG0284|consen 96 KCPVNVVRWT--PEGRRLLTGSQSGEFTLWNGTSFNFETI---------------------------------------- 133 (464)
T ss_pred ccceeeEEEc--CCCceeEeecccccEEEecCceeeHHHH----------------------------------------
Confidence 4789999997 8999999999999999998744322111
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v 270 (501)
+..|...|+++.|++++.++++| .+|.|++|+.+. . .++. +.+| ...|
T Consensus 134 ---------------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-n-nVk~-------~~ahh~eaI 183 (464)
T KOG0284|consen 134 ---------------------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-N-NVKI-------IQAHHAEAI 183 (464)
T ss_pred ---------------------hhhhcccceeEEEccCCCEEEEcCCCceEEecccch-h-hhHH-------hhHhhhhhh
Confidence 27999999999999999999999 999999999882 2 2222 3444 4899
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
++++|+|+. ..|++++.||+|+|||....+.. +++ .||.-.|.+++|+|...+|++|+ |+.
T Consensus 184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL-------------~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVL-------------RGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred heeccCCCC-ceeEEecCCCeEEEEeccCCchh----hee-------------ccCCCCcceeccCCccceeEEccCCce
Confidence 999999987 99999999999999999876432 333 45788999999999999999987 499
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
|++||.++ +.++.++.+|...+ ..+.|+|++++|+++|.|..++++|+.+.++ ..++++|+..
T Consensus 246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkd 308 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKD 308 (464)
T ss_pred eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHhHH-HHHhhcchhh
Confidence 99999997 99999999999876 7999999999999999999999999997644 4899999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eecccc--C-CcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
++++.+.|. ...+ |++|+.|+. ..|... + .......|...|.+++|||-|-+||+|+ +..+.+|.
T Consensus 309 v~~~~WhP~-~~~l-----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 309 VTSLTWHPL-NESL-----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred heeeccccc-cccc-----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999997 4445 899999999 888444 2 2333457899999999999999999999 55688885
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=234.94 Aligned_cols=280 Identities=20% Similarity=0.334 Sum_probs=230.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+++|.++.|+.||+|.++++.|.+|++|+...+. +++++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG-------- 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG-------- 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence 468999999999999999999999999999988665 458899998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|..++.+ .|+..|++++.|+.+.+||+.+|+..+..
T Consensus 60 ----~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~------------------------------------ 97 (307)
T KOG0316|consen 60 ----HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRRF------------------------------------ 97 (307)
T ss_pred ----ceeeecccc--ccccccccCCCCceEEEEEcccCeeeeec------------------------------------
Confidence 779999987 68889999999999999999999865533
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 267 (501)
.+|.+.|+.+.|+.+...+++| .|.++++||.++.. +++++ +....
T Consensus 98 -------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~ 145 (307)
T KOG0316|consen 98 -------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAK 145 (307)
T ss_pred -------------------------ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhc
Confidence 7999999999999999999999 99999999988433 23333 55566
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.++..+. ..++.|+.||+++.||++.+++.. -+- ..+|+++.|++|+++.++++
T Consensus 146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~---------------g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF---------------GHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred CceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc---------------CCcceeEEecCCCCEEEEeec
Confidence 7889998875 559999999999999999986431 111 35899999999999988876
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++++++.|-.+ ++.+..+.+|.....+ ..+++......+++|++||.|++||+.....+ ..+..+
T Consensus 204 ~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~ 268 (307)
T KOG0316|consen 204 DSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVV 268 (307)
T ss_pred cceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccceee-eeeccC
Confidence 69999999987 9999999999886543 56888888889999999999999999876322 222221
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
... .|.+++++|...-+.++.+.+++.|+
T Consensus 269 ~~v---------------------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 269 STV---------------------------------------------IVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred Cce---------------------------------------------eEEeeecccCccceeEecCCceecee
Confidence 111 36788888888888888887777776
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=268.00 Aligned_cols=376 Identities=15% Similarity=0.150 Sum_probs=285.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~ 107 (501)
.+..+.+++++.+||+++|++++..+.+++|++.+++.. +.+++ |+
T Consensus 59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~i---------------------------rswKa~He------ 105 (775)
T KOG0319|consen 59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLI---------------------------RSWKAIHE------ 105 (775)
T ss_pred ccchhhhheeeecCCccEEEEeeccceEEEEEcccchHh---------------------------HhHhhccC------
Confidence 345788999999999999999999999999999988653 66776 88
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc--cc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HG 185 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 185 (501)
++|.-++|. |.+..+++|+.|+.+++||+..+.+...+... .+-+....+.+... .+
T Consensus 106 ------~Pvi~ma~~--~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~-------------gGvVssl~F~~~~~~~lL 164 (775)
T KOG0319|consen 106 ------APVITMAFD--PTGTLLATGGADGRVKVWDIKNGYCTHSFKGH-------------GGVVSSLLFHPHWNRWLL 164 (775)
T ss_pred ------CCeEEEEEc--CCCceEEeccccceEEEEEeeCCEEEEEecCC-------------CceEEEEEeCCccchhhe
Confidence 999999997 78899999999999999999999887765432 22333344444333 34
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC---------------
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------------- 249 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--------------- 249 (501)
+.|. .++.+++||+..... |+... ..|.+.|++++|++|+..++++ +|..+.+||+...
T Consensus 165 ~sg~--~D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v 239 (775)
T KOG0319|consen 165 ASGA--TDGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV 239 (775)
T ss_pred eecC--CCceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence 4444 489999999996433 55555 7899999999999999888887 9999999998640
Q ss_pred --------------------------------------------------------------------------------
Q 010801 250 -------------------------------------------------------------------------------- 249 (501)
Q Consensus 250 -------------------------------------------------------------------------------- 249 (501)
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence
Q ss_pred -------------------------CeeeeeeecCC---CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 250 -------------------------DQCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 250 -------------------------~~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
...++.++.+. .-+.+|...|.+++...+| -+|++|+.|.++++|.+.++.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~ 398 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC 398 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc
Confidence 00001111110 1235677777777755566 788888888888888874432
Q ss_pred ccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEeeCCCCc-----ee----Eeecccc
Q 010801 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP-----VA----TFKIHEH 370 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~~~~~~-----~~----~~~~~~~ 370 (501)
....... ...+|.+.|.+++++..+ .+|++++ |.++++|++.. .+. .. +...|+.
T Consensus 399 ~~~~~~a-------------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 399 SKSLCVA-------------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDK 464 (775)
T ss_pred chhhhhh-------------hhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhcc
Confidence 2111111 135689999999997655 4777775 69999999974 221 11 1233444
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceee
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
.+ ++++++|+.+++||||.|.+.+||+++.. .+..++.+|+..++++.|++ .... ++
T Consensus 465 dI---------------N~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----la 521 (775)
T KOG0319|consen 465 DI---------------NCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LA 521 (775)
T ss_pred cc---------------cceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eE
Confidence 33 79999999999999999999999999955 66799999999999999999 5556 89
Q ss_pred eecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 451 RGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 451 ~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
++|.|++ +||+.. ..+.+..+|+..|....|-.+|+.|++++.+| +.+|+.
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 9999999 999554 45666778999999999999999999888666 899973
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-33 Score=248.36 Aligned_cols=366 Identities=15% Similarity=0.207 Sum_probs=257.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|..+++...|||.|-|+|+|...|.|||||....+. .+..+++.-.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-------------------------iLKnef~v~a-------- 103 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-------------------------ILKNEFQVLA-------- 103 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-------------------------eeeeeeeecc--------
Confidence 5899999999999999999999999999999876432 2445555555
Q ss_pred cccccceeEEEEeecCCCCEEEEee--CC--CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc-
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILST--ND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH- 184 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s--~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (501)
++|.+|+|. .+++++++.+ .+ |.+.+||.-+ -.-.+..+ ...+..+++.++..+
T Consensus 104 ----G~I~Di~Wd--~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~Gh-------------Sr~ins~~~KpsRPfR 162 (603)
T KOG0318|consen 104 ----GPIKDISWD--FDSKRIAAVGEGRERFGHVFLWDSGN--SVGEITGH-------------SRRINSVDFKPSRPFR 162 (603)
T ss_pred ----cccccceeC--CCCcEEEEEecCccceeEEEEecCCC--ccceeecc-------------ceeEeeeeccCCCceE
Confidence 899999997 7888888875 33 3455666432 11111100 112222233222221
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
++++. .++.+.+++-.- .+....+ ..|...|.|+.|+|||.+++++ .||++.+||-.++.+.-.+ ..-
T Consensus 163 i~T~s--dDn~v~ffeGPP---FKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l-----~~~ 231 (603)
T KOG0318|consen 163 IATGS--DDNTVAFFEGPP---FKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL-----EDS 231 (603)
T ss_pred EEecc--CCCeEEEeeCCC---eeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe-----cCC
Confidence 12221 255666665442 3333344 7899999999999999999998 9999999998855443331 113
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+|.+.|.+++|+||+ ..|++++.|.+++|||+.++++. +.+.. ... -......+.|- ...|+
T Consensus 232 ~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv----~t~~~-~~~---------v~dqqvG~lWq--kd~lI 294 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLV----STWPM-GST---------VEDQQVGCLWQ--KDHLI 294 (603)
T ss_pred CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceE----EEeec-CCc---------hhceEEEEEEe--CCeEE
Confidence 5899999999999999 99999999999999999998765 44433 100 01234455565 44555
Q ss_pred EE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce--
Q 010801 344 SR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-- 420 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 420 (501)
+- ..|.|.+++... ..++..+.+|...+ +++..+||+++|.+|+.||.|.-|+..++..-.
T Consensus 295 tVSl~G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred EEEcCcEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence 54 469999999985 66999999999876 899999999999999999999999986642210
Q ss_pred --------EEEecc------------------------------------------------------------------
Q 010801 421 --------ITVEAG------------------------------------------------------------------ 426 (501)
Q Consensus 421 --------~~~~~~------------------------------------------------------------------ 426 (501)
..+..+
T Consensus 359 g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~ 438 (603)
T KOG0318|consen 359 GKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS 438 (603)
T ss_pred cccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence 000000
Q ss_pred ----cCcccceeeccCCccccCccceeeeecccce-eeccccC----CcccccccCCCeEEEEEccCCCEEEEeeC-CeE
Q 010801 427 ----KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNLSSKLLHLAWHPTTNLIACANG-NSL 496 (501)
Q Consensus 427 ----~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~----~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~ 496 (501)
.-...+++++| ++.. .+.|+.|++ .++.+.+ ......+|..+|+++++|||+.+||++.. ..+
T Consensus 439 ~~~~~y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred eeccccccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 01233445555 4555 788999999 9995553 23356789999999999999999999984 447
Q ss_pred EEEe
Q 010801 497 FFHY 500 (501)
Q Consensus 497 ~i~~ 500 (501)
.+|+
T Consensus 512 v~yd 515 (603)
T KOG0318|consen 512 VLYD 515 (603)
T ss_pred EEEE
Confidence 7775
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=261.40 Aligned_cols=267 Identities=16% Similarity=0.211 Sum_probs=227.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.++|.++.|+|...+++++-.+|.|.||+.++... .+.++--+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc-------
Confidence 45889999999999999999999999999999987643 24555555
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
-+|.+.+|. +..+++++|+.|..|++|+..+++.+..+
T Consensus 56 -----~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~F----------------------------------- 93 (794)
T KOG0276|consen 56 -----VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKTF----------------------------------- 93 (794)
T ss_pred -----cchhhheee--eccceEEEecCCceEEEEecccceeeEEe-----------------------------------
Confidence 778888998 56679999999999999999998755543
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|.+-|++++.+|...+++++ +|-+|++||.+..-.+.++ +++|+
T Consensus 94 --------------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~ 140 (794)
T KOG0276|consen 94 --------------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHE 140 (794)
T ss_pred --------------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcc
Confidence 7999999999999999999999 9999999999954445543 89999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~ 345 (501)
..|.+++|+|...+.+++++.|++|++|.+.+.... .+ +.+|...|+++.+-+-| .+|++|
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fT-------------l~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FT-------------LEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----ee-------------eeccccCcceEEeccCCCcceEEec
Confidence 999999999998899999999999999999765322 23 35688999999999855 599999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+| .+|+|||.++ ..+++++.||...+ ..+.|+|.-.++++||+||+++||+..+- .+..++.
T Consensus 204 aDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn 266 (794)
T KOG0276|consen 204 ADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN 266 (794)
T ss_pred CCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh
Confidence 65 9999999997 99999999999877 68999999999999999999999998876 3446777
Q ss_pred cccCcccceeeccC
Q 010801 425 AGKNENRKPILQAA 438 (501)
Q Consensus 425 ~~~~~v~~~~~~~~ 438 (501)
-.-..+++++..+.
T Consensus 267 ~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 267 YGLERVWCIAAHKG 280 (794)
T ss_pred cCCceEEEEeecCC
Confidence 77777777776553
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=239.88 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=261.4
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
....|++.|.+++.+|+.+++|||+.|..-.||+..+++. ...+.+|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------------~~eltgHK----- 106 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------------AGELTGHK----- 106 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------------eeEecCCC-----
Confidence 3446999999999999999999999999999999998864 37789999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
++|+++.|+ .+|.+|++|..+|.|+||+..++......
T Consensus 107 -------DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~--------------------------------- 144 (399)
T KOG0296|consen 107 -------DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKL--------------------------------- 144 (399)
T ss_pred -------CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEe---------------------------------
Confidence 999999998 89999999999999999999988755433
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
......+.-+.|+|.+..|++| .||.+.+|.+..++ ..++ +.+
T Consensus 145 ----------------------------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv-------~~G 188 (399)
T KOG0296|consen 145 ----------------------------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKV-------MSG 188 (399)
T ss_pred ----------------------------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeE-------ecC
Confidence 2334567778999999999999 99999999999543 3333 789
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|+.++++-.|.|+| +.++++..||+|++||+.++... ..+.. .+ .....++.++..+..++.|
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~e-----------~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-AE-----------GLELPCISLNLAGSTLTKG 251 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-cc-----------cCcCCccccccccceeEec
Confidence 99999999999999 99999999999999999998644 22221 00 1356777788888888877
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ ++.+++-+..+ ++.+....+.... +. ....+.+..+-.+.|+..=.+.|+|+-||+|.|||+... ..+...
T Consensus 252 ~~e~~~~~~~~~s-gKVv~~~n~~~~~---l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c 324 (399)
T KOG0296|consen 252 NSEGVACGVNNGS-GKVVNCNNGTVPE---LK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHIC 324 (399)
T ss_pred cCCccEEEEcccc-ceEEEecCCCCcc---cc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheec
Confidence 5 47777777665 6655555431100 00 001111111135666667778899999999999999855 346778
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.|..+|..+.|.+. .+ |.++..+|. +.| ++++.+..+.+|...|.+++.+|+++.++++++|+ ..||.
T Consensus 325 ~he~~V~~l~w~~t---~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT---DY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCCCceEEEEEcCc---ch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 89999999999872 23 788999999 999 77888999999999999999999999999999665 66664
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=228.95 Aligned_cols=289 Identities=17% Similarity=0.288 Sum_probs=225.7
Q ss_pred cccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchhh
Q 010801 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY 106 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~ 106 (501)
..|.+++..++|+|- |..||+++.|..|+||+...+. .+.+...+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence 368999999999997 8899999999999999987432 34444444 3688
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|.+++|+ |.|++|++||.|.++.||.-.+++..
T Consensus 62 -------rsVRsvAws--p~g~~La~aSFD~t~~Iw~k~~~efe------------------------------------ 96 (312)
T KOG0645|consen 62 -------RSVRSVAWS--PHGRYLASASFDATVVIWKKEDGEFE------------------------------------ 96 (312)
T ss_pred -------heeeeeeec--CCCcEEEEeeccceEEEeecCCCcee------------------------------------
Confidence 889999998 88999999999999999988776633
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
|..++ .+|.+.|.+++|+++|.+||++ +|+.|.||.+....+ +... .-+++
T Consensus 97 ----------------------cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~----aVL~~ 148 (312)
T KOG0645|consen 97 ----------------------CVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECI----AVLQE 148 (312)
T ss_pred ----------------------EEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEE----eeecc
Confidence 33334 8999999999999999999999 999999999883332 2211 13789
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|..+.|+|.. .+|++++.|++|++|+-..... ....+. +.+|.+.|.+++|+|.|..|+++
T Consensus 149 HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-W~c~~t-------------l~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-WECVQT-------------LDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred ccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-eeEEEE-------------ecCccceEEEEEecCCCceEEEe
Confidence 99999999999998 9999999999999998763211 111123 34577899999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC------Cc
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG------SA 418 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~ 418 (501)
++ ++++||-..+.-. ..|...+ +.++|. ...|++++.|+.|+||.-... ..
T Consensus 214 sdD~tv~Iw~~~~~~~-----~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l 271 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDLS-----GMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL 271 (312)
T ss_pred cCCcceEeeeeccCcc-----hhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH
Confidence 75 9999998653110 1132322 578897 458999999999999987642 11
Q ss_pred ceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+...-.+|...|+.+.+.|... .+ |++|+.||. ++|..
T Consensus 272 ~~~~~~aHe~dVNsV~w~p~~~-~~-----L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 272 LAKKEGAHEVDVNSVQWNPKVS-NR-----LASGGDDGIVNFWEL 310 (312)
T ss_pred HHhhhcccccccceEEEcCCCC-Cc-----eeecCCCceEEEEEe
Confidence 2345568999999999999433 33 799999999 99943
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.1e-34 Score=272.29 Aligned_cols=287 Identities=22% Similarity=0.397 Sum_probs=234.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 378899999999999999999999999999965541 1335568898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ ++++++++++.|++|++||+. .+...
T Consensus 204 ---~~v~~~~fs--~d~~~l~s~s~D~tiriwd~~~~~~~~--------------------------------------- 239 (456)
T KOG0266|consen 204 ---RGVSDVAFS--PDGSYLLSGSDDKTLRIWDLKDDGRNL--------------------------------------- 239 (456)
T ss_pred ---cceeeeEEC--CCCcEEEEecCCceEEEeeccCCCeEE---------------------------------------
Confidence 889999998 789999999999999999993 33433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
+++ .+|...|++++|+|+++++++| .|++|+|||+++ +.+... +.+|..
T Consensus 240 ---------------------~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~-------l~~hs~ 289 (456)
T KOG0266|consen 240 ---------------------KTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRK-------LKGHSD 289 (456)
T ss_pred ---------------------EEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEe-------eeccCC
Confidence 333 7999999999999999999999 999999999994 566654 789999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~~ 346 (501)
.|++++|++++ ++|++++.|+.|++||+.++... ..+.+.. +.. +++.+.|+|++++++++.
T Consensus 290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~-------------~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSG-------------AENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccC-------------CCCCCceeEEEECCCCcEEEEec
Confidence 99999999999 99999999999999999998631 0022222 122 599999999999999986
Q ss_pred C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+ +.+++||+.. ......+.+|.... .++ .+...++.++++++|+.|+.|++|++.++ .....+.+
T Consensus 354 ~d~~~~~w~l~~-~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 354 LDRTLKLWDLRS-GKSVGTYTGHSNLV---------RCI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred CCCeEEEEEccC-CcceeeecccCCcc---------eeE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 4 8999999986 88888888887742 122 35666889999999999999999999986 45588999
Q ss_pred c-cCcccceeeccCCccccCccceeeeec--ccce-eeccc
Q 010801 426 G-KNENRKPILQAAPRARRSSLSNLTRGL--YRQA-HENSS 462 (501)
Q Consensus 426 ~-~~~v~~~~~~~~~~~~~~~~~~l~~~~--~~~~-~iw~~ 462 (501)
| ...+..+.+.+. ..+ +++++ .|+. .+|..
T Consensus 420 h~~~~~~~~~~~~~--~~~-----~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 HSKAAVSDLSSHPT--ENL-----IASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCceeccccCCC--cCe-----eeecCcCCCceEEEecC
Confidence 9 888888888884 333 56666 5666 77743
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=225.62 Aligned_cols=286 Identities=15% Similarity=0.236 Sum_probs=223.8
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+..+++|. +.|..++|+ |. |..|++++.|+.|++|+...+.-
T Consensus 6 ~~~~~~gh~------------~r~W~~awh--p~~g~ilAscg~Dk~vriw~~~~~~s---------------------- 49 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWH--PGKGVILASCGTDKAVRIWSTSSGDS---------------------- 49 (312)
T ss_pred eEEeecCCC------------CcEEEEEec--cCCceEEEeecCCceEEEEecCCCCc----------------------
Confidence 456788999 899999998 44 77999999999999999885321
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
..|...+-.+|...|++++|+|.|++|++| .|.++.||.-....
T Consensus 50 -----------------------------------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 50 -----------------------------------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred -----------------------------------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 112222326899999999999999999999 99999999766222
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
+++. .+++|...|.+++|+++| ++||+++.|..|-+|.+...... ... ..+.+|...
T Consensus 95 fecv~-------~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf----ec~----------aVL~~HtqD 152 (312)
T KOG0645|consen 95 FECVA-------TLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF----ECI----------AVLQEHTQD 152 (312)
T ss_pred eeEEe-------eeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE----EEE----------eeecccccc
Confidence 3333 389999999999999999 99999999999999998855322 111 224558899
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|..+.|+|...+|++++ |++|++|+-.. +-.+.+++.+|...+ .+++|++.|..|++++.|+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCc
Confidence 99999999999999997 59999998652 235688899998755 8999999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC----Ccc-----cccccCCCe
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHE-----LSYNLSSKL 476 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~----~~~-----~~~~~~~~i 476 (501)
+|+||..-+. .-..|..+++.+.+. ++ . +++++.|+. .++.... ... ....|+..|
T Consensus 218 tv~Iw~~~~~-----~~~~~sr~~Y~v~W~---~~-~-----IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 218 TVSIWRLYTD-----LSGMHSRALYDVPWD---NG-V-----IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred ceEeeeeccC-----cchhcccceEeeeec---cc-c-----eEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 9999985432 122455667777776 12 1 899999999 9993332 111 234688899
Q ss_pred EEEEEccC-CCEEEEeeCCe-EEEEe
Q 010801 477 LHLAWHPT-TNLIACANGNS-LFFHY 500 (501)
Q Consensus 477 ~~~~~sp~-~~~la~~~~~~-~~i~~ 500 (501)
++++|+|. .+.|+++++|| +.+|.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEE
Confidence 99999996 68899999877 66764
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=254.78 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=237.0
Q ss_pred CccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..-+|+..|+++.|.| .+.+|++++.|+.|+||++... .++++++.||.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~---- 258 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR---- 258 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch----
Confidence 3447999999999999 8999999999999999998862 33678999999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.+|.+++|+ ++|..|++++.|+.|++||+++|++...+
T Consensus 259 --------k~Vrd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f-------------------------------- 296 (503)
T KOG0282|consen 259 --------KPVRDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRF-------------------------------- 296 (503)
T ss_pred --------hhhhhhhcc--ccCCeeeeeecceeeeeeccccceEEEEE--------------------------------
Confidence 999999998 89999999999999999999999876543
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.....++|+.|+|++ +.+++| .|+.|+.||++ .+..++ ..
T Consensus 297 ------------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvq-------eY 338 (503)
T KOG0282|consen 297 ------------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQ-------EY 338 (503)
T ss_pred ------------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHH-------HH
Confidence 224567899999998 788888 99999999999 444554 26
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
..|-+.|..+.|-++| +.+++.+.|+++++|+.+..-... .... .+...+.++..+|++++++
T Consensus 339 d~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik----~i~~------------~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIK----NIAD------------PEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred HhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccch----hhcc------------hhhccCcceecCCCCCeeh
Confidence 7788999999999999 999999999999999998764431 1111 0124578899999999999
Q ss_pred EEc-CCcEEEEEeeCC--CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 344 SRD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
+-+ ++.|.+|.+... ......+.+|...... ..+.|||||++|++|+.||.+.+||..+- .+.
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~ 467 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLV 467 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCCccEEEeechhh-hhh
Confidence 876 599999987532 2234567777654322 57999999999999999999999999987 556
Q ss_pred EEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
..+++|..++..+.+.|....+ +|+++-+|. ++|
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Sk------vat~~w~G~Ikiw 502 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSK------VATCGWDGLIKIW 502 (503)
T ss_pred hccccCCcceEEEEecCCCcce------eEecccCceeEec
Confidence 9999999999999999975554 689999998 888
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-33 Score=263.35 Aligned_cols=271 Identities=15% Similarity=0.241 Sum_probs=212.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..++|..|+ +++.+||.|-.|..|++|.+...+++.......... ... . ..+
T Consensus 379 ~~v~ca~fS--ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~---------------~d~---------~--sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSN---------------IDT---------E--SAD 430 (707)
T ss_pred CcceeEeec--CCcchhhccccccEEEEEecchhhhccccchhhhcc---------------ccc---------c--ccc
Confidence 679999998 788888888899999999998765444321110000 000 0 000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
-...+.|... ....+.+ .+|.++|..+.|+|+.++|+++ .|+++++|.+.+.. ++-. ..+|..+|+.
T Consensus 431 ~~~~~~D~~~---~~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~-------y~GH~~PVwd 498 (707)
T KOG0263|consen 431 VDVDMLDDDS---SGTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVI-------YKGHLAPVWD 498 (707)
T ss_pred hhhhhccccC---CceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeecccce-eEEE-------ecCCCcceee
Confidence 0111222221 1222223 7999999999999999999999 99999999999444 3332 6799999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+|.| .+||+++.|++-++|........ +++.+ |-+.|.++.|+|++.|+++|+ |.++|
T Consensus 499 V~F~P~G-yYFatas~D~tArLWs~d~~~Pl----Rifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 499 VQFAPRG-YYFATASHDQTARLWSTDHNKPL----RIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVR 560 (707)
T ss_pred EEecCCc-eEEEecCCCceeeeeecccCCch----hhhcc-------------cccccceEEECCcccccccCCCCceEE
Confidence 9999999 99999999999999998764433 55554 778999999999999999996 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+||+.+ +..++.|.||...+ ++++|||+|++|++|+.||.|.|||+.++ .+...+.+|.+.+.
T Consensus 561 lWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 561 LWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIY 623 (707)
T ss_pred EEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCcee
Confidence 999997 89999999999987 89999999999999999999999999998 44588888888888
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccCCc
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH 466 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~ 466 (501)
++.|+. +|.+ ||+|+.|.. .+|+.....
T Consensus 624 SlsFS~--dg~v-----Lasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 624 SLSFSR--DGNV-----LASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEec--CCCE-----EEecCCCCeEEEEEchhhc
Confidence 888877 7777 888888888 888555333
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=253.11 Aligned_cols=363 Identities=14% Similarity=0.156 Sum_probs=283.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|+|++-+|+.-.||+|..||.|+||+..+++ ...++.||.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~---------------------------~~~tfngHK---------- 107 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE---------------------------ILITFNGHK---------- 107 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCc---------------------------eeeeecccc----------
Confidence 4689999999999999999999999999988664 347899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+.+.|. ..|.+|++||.|+.|.+||+-...-...... +...+....+.....++.+.+.
T Consensus 108 --~AVt~l~fd--~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G-------------Hkd~iT~~~F~~~~~~lvS~sK- 169 (888)
T KOG0306|consen 108 --AAVTTLKFD--KIGTRLASGSKDTDIIVWDLVGEEGLFRLRG-------------HKDSITQALFLNGDSFLVSVSK- 169 (888)
T ss_pred --cceEEEEEc--ccCceEeecCCCccEEEEEeccceeeEEeec-------------chHHHhHHhccCCCeEEEEecc-
Confidence 999999997 8899999999999999999976543322211 2344555555555555555543
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC----------------------
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI---------------------- 248 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~---------------------- 248 (501)
++.|++||++. ..|..+. ..|.+.++.+++.+ +.++++ .|+.+++|++..
T Consensus 170 -Ds~iK~WdL~t---qhCf~Th-vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 170 -DSMIKFWDLET---QHCFETH-VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred -CceEEEEeccc---ceeeeEE-ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 89999999997 5677776 78999999999987 677777 999999999821
Q ss_pred --------------------------------------------------------------------------------
Q 010801 249 -------------------------------------------------------------------------------- 248 (501)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (501)
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence
Q ss_pred ---------CCee------------eeeeec--CC---------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 249 ---------SDQC------------FNIVDM--KP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 249 ---------~~~~------------~~~~~~--~~---------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
++.. +..+.. +. ..+.+|...|++++++.+. ..+++ +..+.+++|+
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeee-cCCCcEEEEE
Confidence 0000 000000 00 1346788999999999886 44544 4567899999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
..+.+.. ++++. +.+.+..|-|.+++++.|.. |.+.+||+.. ...+.++++|.+.+
T Consensus 401 ~~t~kci----RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI--- 457 (888)
T KOG0306|consen 401 RDTLKCI----RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI--- 457 (888)
T ss_pred ccCccee----EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce---
Confidence 9987655 66665 57899999999999999976 9999999986 88888899999876
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc----ceEEE-------ecccCcccceeeccCCccccC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITV-------EAGKNENRKPILQAAPRARRS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~-------~~~~~~v~~~~~~~~~~~~~~ 444 (501)
++++.+||++.+++||.|.+|++||..--.. ..+.+ -.-.+.+.++.++| ++++
T Consensus 458 ------------Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~- 522 (888)
T KOG0306|consen 458 ------------WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL- 522 (888)
T ss_pred ------------eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-
Confidence 8999999999999999999999999742111 10111 12345778888988 8999
Q ss_pred ccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 445 SLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 445 ~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
||.+--|.+ +++-.+ .....+.+|.-+|.+|..|||++.|++|+ +.++.||.
T Consensus 523 ----LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 523 ----LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ----EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 999999999 999444 45566789999999999999999999999 66799995
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-31 Score=277.53 Aligned_cols=302 Identities=21% Similarity=0.288 Sum_probs=221.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|.+++|+|+|++||+|+.|+.|+||+....... + .....+...+.+ .
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----------~--------~~~~~~~~~~~~-~------ 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----------G--------RDIHYPVVELAS-R------ 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----------c--------cccccceEEecc-c------
Confidence 3458999999999999999999999999999997642110 0 000001122222 2
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|++ +++.+|++++.||+|++||+.+++.....
T Consensus 533 ------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~---------------------------------- 571 (793)
T PLN00181 533 ------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEM---------------------------------- 571 (793)
T ss_pred ------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEe----------------------------------
Confidence 5689999984 45789999999999999999876543322
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|++++|+| ++.+|++| .|++|++||++. +..+.. +.
T Consensus 572 ---------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~-------~~- 615 (793)
T PLN00181 572 ---------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGT-------IK- 615 (793)
T ss_pred ---------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEE-------Ee-
Confidence 68999999999996 78899999 999999999984 444443 22
Q ss_pred cccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+...+.++.|++ ++ .+|++|+.||.|++||+++.+... ..+ .+|...|..+.|. ++.+|++
T Consensus 616 ~~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~---~~~-------------~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 616 TKANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPL---CTM-------------IGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred cCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccc---eEe-------------cCCCCCEEEEEEe-CCCEEEE
Confidence 235789999965 56 999999999999999998753211 222 3477899999997 6778887
Q ss_pred Ec-CCcEEEEEeeCC-----CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 345 RD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++ |++|++||++.. .+++..+.+|...+ ..++|+|++++|++|+.|+.|++|+......
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 75 699999999741 35677888887654 6899999999999999999999999875522
Q ss_pred ceEEEe-cccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-E
Q 010801 419 GGITVE-AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-L 496 (501)
Q Consensus 419 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~ 496 (501)
. ..+. .+...+.. .....+...|.+++|+|++..|++|+.++ +
T Consensus 743 ~-~s~~~~~~~~~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 743 V-LSYKFKTIDPVSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred e-EEEecccCCcccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 2 1110 00000000 00123445799999999999999998554 9
Q ss_pred EEEe
Q 010801 497 FFHY 500 (501)
Q Consensus 497 ~i~~ 500 (501)
.||.
T Consensus 788 ~i~~ 791 (793)
T PLN00181 788 KILE 791 (793)
T ss_pred EEEe
Confidence 9986
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.7e-32 Score=247.11 Aligned_cols=279 Identities=23% Similarity=0.390 Sum_probs=230.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.++|++++|+|++++|++++.||.|++|++.+++. ...+.+|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence 5889999999999999999999999999999986643 35567787
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+..+.|+ ++++++++++.|+.|++|++.+++.....
T Consensus 52 ----~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------------------------ 89 (289)
T cd00200 52 ----GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTL------------------------------------ 89 (289)
T ss_pred ----cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEEE------------------------------------
Confidence 778999998 67789999999999999999876433221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...+.++.|++++++++++ .++.|.+||+.. .+.... +..|..
T Consensus 90 -------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~-------~~~~~~ 136 (289)
T cd00200 90 -------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTT-------LRGHTD 136 (289)
T ss_pred -------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEE-------eccCCC
Confidence 4677789999999998888888 699999999983 344332 457888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+.+++|+|++ .++++++.|+.|++||+++++.. ..+.. |...+.++.|+|+++.+++++ +
T Consensus 137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred cEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCC
Confidence 99999999997 88888888999999999876543 33333 456899999999998888775 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||++. ++.+..+..+...+ .+++|+|++.++++++.||.|++|++.+++ ....+..|.
T Consensus 199 ~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~ 261 (289)
T cd00200 199 GTIKLWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHT 261 (289)
T ss_pred CcEEEEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEEccccC
Confidence 9999999985 77777776666544 789999999999999889999999998774 447777999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eec
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
..+..+.+.+ ++.. +++++.++. .+|
T Consensus 262 ~~i~~~~~~~--~~~~-----l~~~~~d~~i~iw 288 (289)
T cd00200 262 NSVTSLAWSP--DGKR-----LASGSADGTIRIW 288 (289)
T ss_pred CcEEEEEECC--CCCE-----EEEecCCCeEEec
Confidence 9999999998 5566 899999988 888
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.8e-33 Score=236.95 Aligned_cols=305 Identities=17% Similarity=0.249 Sum_probs=240.2
Q ss_pred hhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEe
Q 010801 16 CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKT 95 (501)
Q Consensus 16 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (501)
+-+.+--+.+...+.|.+-|+++... +++|++|++||.++|||..+. ...
T Consensus 89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~ 138 (423)
T KOG0313|consen 89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIK 138 (423)
T ss_pred EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEE
Confidence 33444555566667899999999988 889999999999999998755 447
Q ss_pred eeccCCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
++.||. ++|.+++|.. ++....|++++.|.++++|.++.++.....
T Consensus 139 ~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~--------------------- 185 (423)
T KOG0313|consen 139 TIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA--------------------- 185 (423)
T ss_pred EEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------------
Confidence 889999 9999998872 233456999999999999999876533211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-ee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~ 252 (501)
...- .||...|-+++..++|..+++| .|..|+||+..... ..
T Consensus 186 -----------------------------------~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 186 -----------------------------------LKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred -----------------------------------HhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 0000 4999999999999999999999 99999999933210 00
Q ss_pred eeee----------------ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 253 FNIV----------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 253 ~~~~----------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
+... ......+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.... ....
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~---- 299 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT---- 299 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec----
Confidence 0000 0011246899999999999984 689999999999999999987652 2222
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
...+.++.++|..++|++|+ |..|++||.++... ..+++.+|...+ .++.|+
T Consensus 300 ----------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkws 354 (423)
T KOG0313|consen 300 ----------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWS 354 (423)
T ss_pred ----------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecC
Confidence 35799999999999999985 69999999987433 456788999887 689999
Q ss_pred CCCc-EEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 394 GDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 394 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|... +|++|+.|+++++||+.+.+.....+.+|.+.|.++.+.. +.. +++|+.|++ +++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---~~~-----IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---GGL-----IVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---Cce-----EEeccCcceEEEecc
Confidence 9654 6789999999999999998767799999999999999974 444 899999999 88743
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=259.97 Aligned_cols=281 Identities=21% Similarity=0.306 Sum_probs=229.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.++.|+ ++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~fs--~~g~~l~~~~~~~~i~~~~~~~~~~-~------------------------------------------ 194 (456)
T KOG0266|consen 160 PSVTCVDFS--PDGRALAAASSDGLIRIWKLEGIKS-N------------------------------------------ 194 (456)
T ss_pred CceEEEEEc--CCCCeEEEccCCCcEEEeecccccc-h------------------------------------------
Confidence 789999998 8999999999999999999965541 0
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..+.+ .+|...|.+++|+|++++++++ .|++|++||+...+..+++ +.+|...|++
T Consensus 195 ---------------~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------l~gH~~~v~~ 251 (456)
T KOG0266|consen 195 ---------------LLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------LKGHSTYVTS 251 (456)
T ss_pred ---------------hhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-------ecCCCCceEE
Confidence 11111 5899999999999999999999 9999999999646566665 7899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|+|++ +++++|+.|++|++||+++++.. +.+. +|...|++++|++++.+|++++ |+.|+
T Consensus 252 ~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~-------------~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 252 VAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLK-------------GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeee-------------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 9999999 99999999999999999997544 4444 4788999999999999999986 69999
Q ss_pred EEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 352 LWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 352 lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
+||+.+ +. +...+..+.... .++.++|+|++++|+++..|+.+++||+..+.. ...+.+|...
T Consensus 314 vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-VGTYTGHSNL 378 (456)
T ss_pred EEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-eeeecccCCc
Confidence 999986 55 456666665541 127899999999999999999999999998844 4788888876
Q ss_pred ccce-eeccCCccccCccceeeeecccce-eecccc--CCccccccc-CCCeEEEEEccCCCEEEEee---CCeEEEEe
Q 010801 430 NRKP-ILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY 500 (501)
Q Consensus 430 v~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~-~~~i~~~~~sp~~~~la~~~---~~~~~i~~ 500 (501)
+.+. .......+++ +.+|+.|+. .+|+.. ..+....+| ...+..++|+|..+++++++ +..+.+|.
T Consensus 379 ~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ceeEecccccCCCCe-----EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4222 1111236666 999999999 999444 556667788 88999999999999999998 45577774
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-33 Score=235.72 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=236.7
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|+.+-|+ |+-..+++++.|.+|++||..++++....
T Consensus 109 ~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~L---------------------------------------- 146 (406)
T KOG0295|consen 109 SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERSL---------------------------------------- 146 (406)
T ss_pred cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhhh----------------------------------------
Confidence 889999997 67778888999999999999998864332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|.+.+.+++|+..|++++++ .|-.+++||.....++++. +.+|...|.+
T Consensus 147 ---------------------rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-------~~gh~h~vS~ 198 (406)
T KOG0295|consen 147 ---------------------RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-------LIGHEHGVSS 198 (406)
T ss_pred ---------------------hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-------hcCcccceee
Confidence 7999999999999999999999 8888999999954555553 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|-|.| .++++++.|.+|+.|++.++-.. +++.+ |..+|..+..+.||.++|+++ |.+|+
T Consensus 199 V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~-------------h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 199 VFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPG-------------HSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred EEEEecC-CeeeecccccceeEEecccceeE----EeccC-------------chHhEEEEEecCCeeEEEecCCCceEE
Confidence 9999999 99999999999999999998654 45544 678999999999999999986 59999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC---------------CcEEEEEeCCCeEEEEecCCC
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---------------GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|-+.+ +++...+..|+.++ -+++|.|. +.++.+++.|++|++||+.++
T Consensus 261 vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 261 VWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred EEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999986 77788888888876 45666542 358999999999999999999
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN- 492 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~- 492 (501)
.++ .++.+|.++|+.++|+| .|++ |+++..|+. ++|+.. +.......|+.-|++++|+.+..++++|+
T Consensus 325 ~cL-~tL~ghdnwVr~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 325 MCL-FTLVGHDNWVRGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eEE-EEEecccceeeeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 655 99999999999999999 7899 999999999 999444 45555668899999999999999999999
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
+-...+|.
T Consensus 397 dqt~KvwE 404 (406)
T KOG0295|consen 397 DQTVKVWE 404 (406)
T ss_pred cceeeeee
Confidence 44577774
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=258.74 Aligned_cols=276 Identities=20% Similarity=0.328 Sum_probs=206.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCC-----------------------cc--chhhhh------h
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-----------------------QH--ISRSEL------E 78 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~-----------------------~~--~~~~~~------~ 78 (501)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+.... .. ...+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999999886222100 00 000000 0
Q ss_pred hccc--cccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccC
Q 010801 79 KQMD--FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (501)
Q Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~ 156 (501)
.... ....+.-..+++..+.||. +.|.+|.|+ ..++|++++.|++||||++...++.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~----- 404 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLK----- 404 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcceee-----
Confidence 0000 0011111345667889999 889999997 56899999999999999998766444
Q ss_pred CCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEE
Q 010801 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS 235 (501)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~ 235 (501)
.| .|.+.|+|++|+| |.++|++
T Consensus 405 -------------------------------------------------------~F--~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 405 -------------------------------------------------------VF--SHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred -------------------------------------------------------EE--ecCCeeEEEEecccCCCcEee
Confidence 33 8999999999999 7889999
Q ss_pred E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc
Q 010801 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (501)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 314 (501)
| -|+.|+||++. ..+... ......-|++++|.|+| +..++|+.+|.+++|+....++.. .+..+.
T Consensus 428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~ 493 (712)
T KOG0283|consen 428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL 493 (712)
T ss_pred cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence 9 99999999998 454443 23344789999999999 999999999999999998875442 111100
Q ss_pred ccCCCcceeeecccceeEEEEeeCC--CEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 315 ~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
... . -..|. .|+.+.|.|.. +.|++..|..|||||.+. ..++..+++....... ....|
T Consensus 494 ~~~---K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf 554 (712)
T KOG0283|consen 494 HNK---K-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF 554 (712)
T ss_pred ccC---c-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence 000 0 01123 79999999854 377787889999999985 8888899887765432 57899
Q ss_pred cCCCcEEEEEeCCCeEEEEecCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+.||++|+++++|..|+||+++.
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999843
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=243.37 Aligned_cols=309 Identities=20% Similarity=0.324 Sum_probs=226.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+..|+++++.|.|..+++|+.|.+|++||+.+.... .+.++.+.--..|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~h~-------- 216 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCETHQ-------- 216 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccccc--------
Confidence 36788999999999999999999999999999876431 11222222233444
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
|++++|+ +.|..|++.+.....+|+|..+.+.....+
T Consensus 217 ------i~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K----------------------------------- 253 (641)
T KOG0772|consen 217 ------INSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSK----------------------------------- 253 (641)
T ss_pred ------cceeeec--CCCCeEEEEecCcceeEEccCCceeeeeec-----------------------------------
Confidence 9999998 688899988888999999988776655442
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
|.-.+-|+.. ..+|...++|.+|+|+.+ .++++ .||+++|||++..+...+++..++ ..+..
T Consensus 254 ----GDQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~R 317 (641)
T KOG0772|consen 254 ----GDQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKR 317 (641)
T ss_pred ----cchhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcc
Confidence 2222333322 179999999999999754 55666 999999999997766666654442 33556
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~ 345 (501)
-+++.++|+|+| ++||.|+.||.|.+|+.+...... ...+-. .|.. .|+++.||+||++|++.
T Consensus 318 v~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~-------------AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 318 VPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP-VMKVKD-------------AHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred cCceeeecCCCc-chhhhcccCCceeeeecCCccccc-ceEeee-------------ccCCCCceeEEEeccccchhhhc
Confidence 678999999999 999999999999999986542210 111212 2444 89999999999999997
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecCCCCc
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSA 418 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~ 418 (501)
+ |+++++||++...+++....+....-+. +.++|||+.++|++|.. .|.+.+||..+.+.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~-------------tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPG-------------TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCC-------------CccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 5 6999999999878888877766543322 68999999999999875 46788888776533
Q ss_pred ceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC-eEE
Q 010801 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLF 497 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~ 497 (501)
+ ..+ -++ ...|..+.|||.-+.|.+++.| +++
T Consensus 450 v-~ki----------~i~------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 450 V-YKI----------DIS------------------------------------TASVVRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred E-EEe----------cCC------------------------------------CceEEEEeecchhhheeeecCCCceE
Confidence 2 111 111 2266788899998887777754 477
Q ss_pred EEe
Q 010801 498 FHY 500 (501)
Q Consensus 498 i~~ 500 (501)
+||
T Consensus 483 vyY 485 (641)
T KOG0772|consen 483 VYY 485 (641)
T ss_pred EEE
Confidence 776
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=237.66 Aligned_cols=233 Identities=13% Similarity=0.274 Sum_probs=194.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
....|+|+.+. ...+++|..|++|+|||..+-+ +...+.||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt--------- 237 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT--------- 237 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence 35789999985 4468999999999999987544 447899999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++|.|+.|. .+.+++|+.|.+|++||++++++.++.
T Consensus 238 ---GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tl------------------------------------- 273 (499)
T KOG0281|consen 238 ---GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTL------------------------------------- 273 (499)
T ss_pred ---CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHH-------------------------------------
Confidence 999999984 569999999999999999998865543
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+|...|..+.|+ ..+++++ .|.++.+||+...... .. ...+.+|...
T Consensus 274 ------------------------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-t~----rrVLvGHrAa 322 (499)
T KOG0281|consen 274 ------------------------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-TL----RRVLVGHRAA 322 (499)
T ss_pred ------------------------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-HH----HHHHhhhhhh
Confidence 6889999999997 3488888 9999999999854421 10 0126799999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+.+.|+. +++++++.|.+|++|++.+.+.. +++.+ |...|.++.+. |+++++|+ |.
T Consensus 323 VNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl~g-------------HkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 323 VNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred eeeecccc---ceEEEecCCceEEEEeccceeee----hhhhc-------------ccccceehhcc--CeEEEecCCCc
Confidence 99999873 78999999999999999998654 44444 77889888875 89999995 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|++||+.. +.+++.++||+..+ .++.| |.+.+++|..||+|+|||+..+
T Consensus 381 tIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 381 TIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccc
Confidence 999999996 99999999999987 67888 6778999999999999999876
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-32 Score=254.12 Aligned_cols=296 Identities=16% Similarity=0.211 Sum_probs=239.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
+.+|..++|+|...++.++-..|.|++||..-+.++ ..|..|+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------------~rFdeHd---------- 51 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------------DRFDEHD---------- 51 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------------hhhhccC----------
Confidence 578999999999999999999999999999876543 6688898
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
++|..|+|+ |.+.+|++|+.|-.|++|+..+.++....
T Consensus 52 --GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclftL-------------------------------------- 89 (1202)
T KOG0292|consen 52 --GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFTL-------------------------------------- 89 (1202)
T ss_pred --Cccceeeec--CCCCeEEecCCccEEEEEecccceehhhh--------------------------------------
Confidence 999999998 77889999999999999999987755433
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|-+-|+.+.|++.-..++++ +|.+|+||+.. .+.++.+ +.+|...|
T Consensus 90 -----------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYV 138 (1202)
T KOG0292|consen 90 -----------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYV 138 (1202)
T ss_pred -----------------------ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEE
Confidence 7999999999999999999999 99999999999 6667765 79999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce----eecccc--------cCCCcceeeecccceeEEEEeeC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI----LRDAAE--------SHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
.|..|+|.. .+++++|.|-+||+||+..-+........ +.++.. .-.....+.||...|+.++|+|.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999987 99999999999999999764322111010 000000 00112246899999999999999
Q ss_pred CCEEEEEcC-CcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSRDY-MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~~-~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
-.+|++|+| ..|++|.... .+ .+.+..+|.+.+ .++-|+|...++++.|+|++|+|||+..
T Consensus 218 lpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cceEEecCCcceeeEEEecc-ccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEeccc
Confidence 999999975 9999999863 44 345678898877 7899999999999999999999999986
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
... .+++....+..+.++..|. .. |..++.|+. .++...
T Consensus 282 Rt~-v~tfrrendRFW~laahP~--lN------LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 RTS-VQTFRRENDRFWILAAHPE--LN------LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred ccc-eeeeeccCCeEEEEEecCC--cc------eeeeecCCceEEEEEc
Confidence 644 5888888888899999884 22 444444544 777443
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-33 Score=233.96 Aligned_cols=292 Identities=15% Similarity=0.219 Sum_probs=235.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+.+-|..|||||+||++|+.||.|-||++.+|+.. ..| .|.....|.-|+
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-------KDL------------kYQAqd~fMMmd--------- 263 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-------KDL------------KYQAQDNFMMMD--------- 263 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhh-------hhh------------hhhhhcceeecc---------
Confidence 3567899999999999999999999999999998752 111 222223344455
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++|.|+.|+ .|..++++|+.||.|++|.+++|.+.+
T Consensus 264 ---~aVlci~FS--RDsEMlAsGsqDGkIKvWri~tG~ClR--------------------------------------- 299 (508)
T KOG0275|consen 264 ---DAVLCISFS--RDSEMLASGSQDGKIKVWRIETGQCLR--------------------------------------- 299 (508)
T ss_pred ---cceEEEeec--ccHHHhhccCcCCcEEEEEEecchHHH---------------------------------------
Confidence 899999998 788999999999999999999987544
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.|-..|...|+|+.|+.|+..++++ .|.++++--+. .+++++ .+.+|...
T Consensus 300 ---------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsSy 350 (508)
T KOG0275|consen 300 ---------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSSY 350 (508)
T ss_pred ---------------------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCcccc
Confidence 3335899999999999999999998 99999999999 555655 48999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~ 347 (501)
|+...|.++| ..+++++.||+|++|+..+.+.. .+|.. .+...+|+++..-|.+ ..++++. .
T Consensus 351 vn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 351 VNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred ccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCC
Confidence 9999999999 99999999999999999988654 33333 1124578888888754 4555554 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
++|++.++. ++.++.+......... ..+.+.+|.|.++.+.++|+.++.|.+.+| .+..++..|.
T Consensus 415 ntv~imn~q--GQvVrsfsSGkREgGd------------Fi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhE 479 (508)
T KOG0275|consen 415 NTVYIMNMQ--GQVVRSFSSGKREGGD------------FINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHE 479 (508)
T ss_pred CeEEEEecc--ceEEeeeccCCccCCc------------eEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccc
Confidence 999999986 8888888654332211 157899999999999999999999999998 5669999999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
..+..++-.|- -.+ +|+=+.|+. ++|.
T Consensus 480 kdvIGl~HHPH--qNl-----lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHPH--QNL-----LASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCcc--cch-----hhhhcccchhhhcC
Confidence 99999988884 233 788888888 8884
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.3e-33 Score=244.01 Aligned_cols=289 Identities=21% Similarity=0.342 Sum_probs=230.9
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.+..+.||+ ..|+++.|.| ..+.+|++++.|+.|+||++.+.
T Consensus 206 ~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~------------------------- 247 (503)
T KOG0282|consen 206 LSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDD------------------------- 247 (503)
T ss_pred heeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecC-------------------------
Confidence 456788999 9999999984 37899999999999999998762
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..|+++| .+|..+|.+++|+++|..++++ .|+.|++||++ .++
T Consensus 248 ----------------------------------~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~ 291 (503)
T KOG0282|consen 248 ----------------------------------RRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQ 291 (503)
T ss_pred ----------------------------------cceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cce
Confidence 2355566 8999999999999999999998 99999999999 455
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
+...+ .....++++.|+|++.+.|++|+.|+.|+.||+|+++.. +.+.. |-+.|.
T Consensus 292 ~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i~ 346 (503)
T KOG0282|consen 292 VLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAIL 346 (503)
T ss_pred EEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhhee
Confidence 54432 134567999999999889999999999999999999765 33333 457899
Q ss_pred EEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEE
Q 010801 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~i 410 (501)
.+.|-++|+++++.+| ++++||+.+. ..++..+..+.... ..++..+|+++++++-+.|+.|.+
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hs--------------mP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHT--------------MPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhcc--------------CcceecCCCCCeehhhccCceEEE
Confidence 9999999999998875 9999999986 54444332221110 047999999999999999999999
Q ss_pred EecCCCCc--ceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCC
Q 010801 411 FSHGVGSA--GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 411 wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
|.+..... ..+.+++|..+-+++....+.+|++ |++|+.+|. .+| ++...+.....|.+++..+.|||..
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 99865432 2467889887655544433349999 999999999 999 5556777788899999999999986
Q ss_pred -CEEEEee-CCeEEEEe
Q 010801 486 -NLIACAN-GNSLFFHY 500 (501)
Q Consensus 486 -~~la~~~-~~~~~i~~ 500 (501)
..+|+++ ++.|.+|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 4577777 55699985
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-30 Score=238.88 Aligned_cols=281 Identities=20% Similarity=0.324 Sum_probs=229.0
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+++|. +.|++++|+ ++++++++++.||.+++|++.+++.....
T Consensus 3 ~~~~~h~------------~~i~~~~~~--~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--------------------- 47 (289)
T cd00200 3 RTLKGHT------------GGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTL--------------------- 47 (289)
T ss_pred hHhcccC------------CCEEEEEEc--CCCCEEEEeecCcEEEEEEeeCCCcEEEE---------------------
Confidence 3467888 899999998 77899999999999999999876533221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
..|...+..+.|+|+++.++++ .++.|++|++... +..
T Consensus 48 ----------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~ 86 (289)
T cd00200 48 ----------------------------------------KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-ECV 86 (289)
T ss_pred ----------------------------------------ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-cce
Confidence 5677888899999999999998 8999999999943 333
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
.. +..|...+.++.|+|++ +++++++.||.|++||+++++.. ..+. .|...+.++
T Consensus 87 ~~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~-------------~~~~~i~~~ 141 (289)
T cd00200 87 RT-------LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLR-------------GHTDWVNSV 141 (289)
T ss_pred EE-------EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEec-------------cCCCcEEEE
Confidence 32 45777889999999997 88888888999999999865432 2222 356789999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.|+|+++++++++ ++.|++||++. .+.+..+..+...+ .+++|+|+++.+++++.|+.|++||
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEE
Confidence 9999999999987 79999999985 77778887776544 6899999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEE
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
+..+ .....+..|...+..+.+.+ ++.+ +++++.++. .+|+.. ........+...|.+++|+|++++|+
T Consensus 206 ~~~~-~~~~~~~~~~~~i~~~~~~~--~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 206 LSTG-KCLGTLRGHENGVNSVAFSP--DGYL-----LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCCC-ceecchhhcCCceEEEEEcC--CCcE-----EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 9876 34467778888999999998 4666 788877888 999554 34444557888999999999999999
Q ss_pred EeeCC-eEEEEe
Q 010801 490 CANGN-SLFFHY 500 (501)
Q Consensus 490 ~~~~~-~~~i~~ 500 (501)
+++.| .+.+|.
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 98865 588884
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.7e-33 Score=224.02 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=241.9
Q ss_pred cccccceEEEEEcc---CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..|+.+|-.++||| +|-+|++++.||.-.+-+-++|. .+.+|.||.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk---- 59 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK---- 59 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC----
Confidence 46899999999986 89999999999988877777665 458899999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|+..... .+..+-++++.|=+-++||.-+|.....
T Consensus 60 --------gavw~~~l~--~na~~aasaaadftakvw~a~tgdelhs--------------------------------- 96 (334)
T KOG0278|consen 60 --------GAVWSATLN--KNATRAASAAADFTAKVWDAVTGDELHS--------------------------------- 96 (334)
T ss_pred --------cceeeeecC--chhhhhhhhcccchhhhhhhhhhhhhhh---------------------------------
Confidence 999999986 6777888899999999999988764432
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|...|.+++|+.|.+.|++| .+..+++||++..+-.. ..+.
T Consensus 97 -----------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-------~E~~ 140 (334)
T KOG0278|consen 97 -----------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-------KEIS 140 (334)
T ss_pred -----------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-------hhhc
Confidence 3788899999999999999999 99999999999544332 3588
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|.+.|+.+.|.... +.|++++.|++||+||.+++... +.+.. +.+|+++.++++|++|..
T Consensus 141 ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTI 201 (334)
T ss_pred CCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEE
Confidence 999999999999887 89999999999999999999765 44443 468999999999999988
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+.|.+||..+ ..++..+...... .+.+.+|+...+++|++|..++.||..++..+....+
T Consensus 202 a~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 202 AYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred ecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 8779999999986 7777777766543 6899999999999999999999999999977755569
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+|.++|.++.|+| +|.. -++|+.||. ++|...
T Consensus 265 gh~gpVhcVrFSP--dGE~-----yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 265 GHFGPVHCVRFSP--DGEL-----YASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCCceEEEEECC--CCce-----eeccCCCceEEEEEec
Confidence 9999999999999 7777 899999999 999443
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.5e-31 Score=213.93 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=218.7
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
+...|...|.+|+|+-+|..||+|+.|+++.||+++..+.. .....++|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~----- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT----- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-----
Confidence 34568899999999999999999999999999999865321 224467888
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|-.++|.| +...+|++++.|++|++||++.+++......
T Consensus 65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~------------------------------- 105 (313)
T KOG1407|consen 65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIET------------------------------- 105 (313)
T ss_pred -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeec-------------------------------
Confidence 8899999996 6678999999999999999999886654311
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
...=.-+.|+|+|++++++ .|..|...|.++ .+... -..
T Consensus 106 -------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~~--------~~~ 145 (313)
T KOG1407|consen 106 -------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDART-YKIVN--------EEQ 145 (313)
T ss_pred -------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecc-cceee--------hhc
Confidence 1222347899999999999 999999999883 33332 222
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....+..++|+-++ .+++.....|+|.|.....-+.. ..+ ..|+....++.|+|+|+++|+|
T Consensus 146 ~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----~si-------------~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 146 FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----QSI-------------KAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccc----ccc-------------ccCCcceEEEEECCCCceEeec
Confidence 34567888999776 77777777899999887654322 333 4477889999999999999999
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ |-.+.+||++. --+++.+.-++-++ ..++|+.||++||+||+|..|-|=++++|..+ ..
T Consensus 208 sADAlvSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~e-- 268 (313)
T KOG1407|consen 208 SADALVSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WE-- 268 (313)
T ss_pred cccceeeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCeE-EE--
Confidence 6 69999999974 77778888777665 78999999999999999999999999998543 11
Q ss_pred cccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
..++++-..+||||...+||.+++|
T Consensus 269 ---------------------------------------------I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 269 ---------------------------------------------IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---------------------------------------------eeccCCceeEEecCCCceeeEEecC
Confidence 1223356789999999999998853
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=221.92 Aligned_cols=309 Identities=15% Similarity=0.194 Sum_probs=235.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+++++.+|||||.++|||+.|..|+|+|++..-.. ...++...+.. . ....+++++-.|.
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak---s~~~em~~~~~---q---a~hPvIRTlYDH~-------- 172 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK---SKPKEMISGDT---Q---ARHPVIRTLYDHV-------- 172 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh---cchhhhccCCc---c---cCCceEeehhhcc--------
Confidence 58999999999999999999999999999998832110 01111111110 0 1234678888998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+++.|+ |....|++++.|++|++||+.....++..+
T Consensus 173 ----devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~K----------------------------------- 211 (430)
T KOG0640|consen 173 ----DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAFK----------------------------------- 211 (430)
T ss_pred ----Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHHH-----------------------------------
Confidence 889999998 778899999999999999987654332211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. .....+|.+++|+|.|.+++.| +-.++++||++ .-+++-.- ..-..|.+
T Consensus 212 ----------------------~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~qht~ 262 (430)
T KOG0640|consen 212 ----------------------V--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQHTG 262 (430)
T ss_pred ----------------------H--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Cccccccc
Confidence 1 2345689999999999999999 89999999999 45555321 22467999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~- 346 (501)
.|+++.+++.+ ++.++++.||.|++||--+++.+ ..+.. .| ...|.+..|..+|+||++.+
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecCC
Confidence 99999999999 99999999999999998877654 33322 12 35799999999999999764
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcceEEEec
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|..+++|.+.+ ++.+.++.|....... . -.+...|.....+++.-.+ .+.+.-||..+...+..---+
T Consensus 326 DS~vkLWEi~t-~R~l~~YtGAg~tgrq--------~--~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 326 DSTVKLWEIST-GRMLKEYTGAGTTGRQ--------K--HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred cceeeeeeecC-CceEEEEecCCcccch--------h--hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC
Confidence 79999999997 8999998865321100 0 0045677777777776554 578999999998777677779
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
|.++++.+.-+|..++ +.+++.|-. +.|
T Consensus 395 Hn~a~R~i~HSP~~p~-------FmTcsdD~raRFW 423 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPA-------FMTCSDDFRARFW 423 (430)
T ss_pred CCCCceEEEeCCCCCc-------eeeecccceeeee
Confidence 9999999999996443 789998888 888
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-31 Score=229.64 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=224.7
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
....++.|+ +.|+-+.|+ ++|++||+++.|.+..+|++......+
T Consensus 216 t~qil~~ht------------dEVWfl~FS--~nGkyLAsaSkD~Taiiw~v~~d~~~k--------------------- 260 (519)
T KOG0293|consen 216 TWQILQDHT------------DEVWFLQFS--HNGKYLASASKDSTAIIWIVVYDVHFK--------------------- 260 (519)
T ss_pred hhhhHhhCC------------CcEEEEEEc--CCCeeEeeccCCceEEEEEEecCccee---------------------
Confidence 345677888 889999998 899999999999999999986533211
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
...++ .+|..+|..+.|+||.++++++ .+..+.+||+.++ .
T Consensus 261 ------------------------------------l~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg-d 302 (519)
T KOG0293|consen 261 ------------------------------------LKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG-D 302 (519)
T ss_pred ------------------------------------eeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCCcc-h
Confidence 11222 7999999999999999999998 8888999999944 4
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
....+ -.++...+.+++|.||| ..+++|+.|+.+..||+..... ..|++ .. ...|.
T Consensus 303 ~~~~y------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~g-vr-----------~~~v~ 358 (519)
T KOG0293|consen 303 LRHLY------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEG-VR-----------DPKVH 358 (519)
T ss_pred hhhhc------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hcccc-cc-----------cceeE
Confidence 44332 23356889999999999 9999999999999999987542 34444 11 13699
Q ss_pred EEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEE
Q 010801 332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (501)
Q Consensus 332 ~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~i 410 (501)
+++.++||+++++. .|..|++|+..+ ......+..+.. + ++++.|.|++++.+.-.+..|++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~-i---------------ts~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP-I---------------TSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc-e---------------eEEEEcCCCcEEEEEcccCeeEE
Confidence 99999999988765 679999999875 443433433332 2 79999999999999999999999
Q ss_pred EecCCCCcceEEEecccCc--ccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCC
Q 010801 411 FSHGVGSAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
||++.. .++..+.+|+.. +-.-+|.-. +..+ +++|+.|++ .|| ..+..+..+.+|+..|++++|+|..
T Consensus 422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~-~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 422 WDLEEN-KLVRKYFGHKQGHFIIRSCFGGG-NDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred eecchh-hHHHHhhcccccceEEEeccCCC-Ccce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 999965 555777888754 334455443 4556 899999999 999 5566778889999999999999987
Q ss_pred -CEEEEeeCCe-EEEEe
Q 010801 486 -NLIACANGNS-LFFHY 500 (501)
Q Consensus 486 -~~la~~~~~~-~~i~~ 500 (501)
.++|+|++|+ ++||.
T Consensus 495 p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWG 511 (519)
T ss_pred HHHhhccCCCCeEEEec
Confidence 5688888666 99995
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.9e-31 Score=237.96 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=229.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+|.|+ |...+++++-.+|.|.||+.++....+.+
T Consensus 14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf---------------------------------------- 51 (794)
T KOG0276|consen 14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------------------- 51 (794)
T ss_pred CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence 889999998 67789999999999999999987766543
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.-..-+|++..|-+..+.+++| +|..|++|+.++.. .++. ++.|...|++
T Consensus 52 ---------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-kV~~-------FeAH~DyIR~ 102 (794)
T KOG0276|consen 52 ---------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-KVKT-------FEAHSDYIRS 102 (794)
T ss_pred ---------------------eecccchhhheeeeccceEEEecCCceEEEEecccce-eeEE-------eeccccceee
Confidence 3335678888898888999999 99999999999544 4443 8999999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNL 350 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i 350 (501)
++.+|.. .++++++.|-.|++||....=.+. ++| .||...|++++|+| |.+.+|+++ |++|
T Consensus 103 iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~---qtf-------------eGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 103 IAVHPTL-PYVLTSSDDMTIKLWDWENEWACE---QTF-------------EGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eeecCCC-CeEEecCCccEEEEeeccCceeee---eEE-------------cCcceEEEEEEecCCCccceeeeeccccE
Confidence 9999998 899999999999999998753321 444 45889999999999 567888886 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC--CcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+||.+.. ..+..++++|...+ +++++-+. ..+|++|++|.+|+|||.++..++ +++++|..
T Consensus 166 KVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-~TLeGHt~ 228 (794)
T KOG0276|consen 166 KVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-QTLEGHTN 228 (794)
T ss_pred EEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchHHHH-HHhhcccc
Confidence 9999985 88899999999877 78998874 579999999999999999998666 99999999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccccC--CcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.|..+.|.|. .+.+++|+.||+ +||.... ....+.---.+|.+++-.+.++.+++|.+++..+.+
T Consensus 229 Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 229 NVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred cceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9999999995 334999999999 9995442 222233334689999999999999999988866654
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3e-29 Score=210.78 Aligned_cols=268 Identities=18% Similarity=0.265 Sum_probs=210.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+++.|+++|.+|++++.|.+++|||..+++.. .++..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---------------------------~ti~skk---------- 56 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---------------------------KTINSKK---------- 56 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---------------------------eEeeccc----------
Confidence 688999999999999999999999999999977643 5666665
Q ss_pred cccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.|..++|- .....++.++. |.+||..++.+++.++.+
T Consensus 57 --yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRYF------------------------------------ 96 (311)
T KOG1446|consen 57 --YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF------------------------------------ 96 (311)
T ss_pred --ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEEc------------------------------------
Confidence 678899997 44455666654 889999999987755543
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.||...|.+|+.+|-+..++++ .|++|++||++ ...+...+ +..
T Consensus 97 -------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~ 141 (311)
T KOG1446|consen 97 -------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLS 141 (311)
T ss_pred -------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecC
Confidence 8999999999999999999999 99999999999 44454432 112
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~- 347 (501)
.-..++|+|+| -++|++.....|++||+|.-.... ...+.. . .+.....+.+.|+|||++|+.++.
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgP--F~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGP--FTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCCCC--ceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeCC
Confidence 23467899999 999999888899999998753211 122222 0 012357899999999999988765
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-c
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 426 (501)
+.+++.|.-. +..+.++.++..... +. .+.+|+||++++++|+.||+|.+|+++++... ..+.+ +
T Consensus 209 s~~~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~ 274 (311)
T KOG1446|consen 209 SFIYLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGPN 274 (311)
T ss_pred CcEEEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCCC
Confidence 8999999975 888888887766421 00 47899999999999999999999999999655 55555 7
Q ss_pred cCcccceeeccC
Q 010801 427 KNENRKPILQAA 438 (501)
Q Consensus 427 ~~~v~~~~~~~~ 438 (501)
..++.++.|.|.
T Consensus 275 ~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 275 GGPVSCVRFNPR 286 (311)
T ss_pred CCCccccccCCc
Confidence 889999999883
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=3.5e-30 Score=210.67 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=230.0
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+...+|..+++.+.++.+|.+|++++.|.+..||-..+|+.+ .++.||.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------------Gty~GHt---- 52 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------------GTYDGHT---- 52 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------------eeecCCC----
Confidence 345579999999999999999999999999999998877754 8899999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|+++... -+.+++++|+.|.+++|||+.+|+++...+.+. .+....+...++..
T Consensus 53 --------GavW~~Did--~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--------------~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 53 --------GAVWCCDID--WDSKHLITGSADQTAKLWDVETGKQLATWKTNS--------------PVKRVDFSFGGNLI 108 (327)
T ss_pred --------ceEEEEEec--CCcceeeeccccceeEEEEcCCCcEEEEeecCC--------------eeEEEeeccCCcEE
Confidence 999999986 678899999999999999999999877654432 22233333444333
Q ss_pred ccce---eccCcceEEEeccCce----eeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 186 YHLE---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 186 ~~~~---~~~~~~i~~w~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
.... ....+.+.++++.... ..+|.... ..+.+.++.+-|.|.++.|++| .||.|.+||.+++.+.+..
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-- 185 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS-- 185 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec--
Confidence 2221 1123477888887543 45556655 6677899999999999999999 9999999999966665553
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
...|...|+.+.++|+. .++++++.|.+-++||.++-+.. +.+.. ..++++.+++|
T Consensus 186 -----~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP 241 (327)
T KOG0643|consen 186 -----DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISP 241 (327)
T ss_pred -----hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceeccc
Confidence 56788999999999998 99999999999999999987655 66665 57899999999
Q ss_pred CCCEEEEEcC---CcEEEEEeeC-----------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 338 DGQHLLSRDY---MNLKLWDIRM-----------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 338 ~~~~l~~~~~---~~i~lwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
-...++.|+. ..|.--+.+. ..+.+...++|-+++ ++++|+|+|+..++|+
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGG 306 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCC
Confidence 8777776531 3332222221 034566778888876 7999999999999999
Q ss_pred CCCeEEEEecCCC
Q 010801 404 YSNLLRIFSHGVG 416 (501)
Q Consensus 404 ~dg~i~iwd~~~~ 416 (501)
+||.|++.-++..
T Consensus 307 EDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 307 EDGYVRLHHFDSN 319 (327)
T ss_pred CCceEEEEEeccc
Confidence 9999999877643
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=2.9e-30 Score=214.74 Aligned_cols=253 Identities=18% Similarity=0.279 Sum_probs=204.3
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
..++..+.+|+ +.|+.++|+ |+|..|++|+.|..|.+|++.+...-.
T Consensus 37 ~ap~m~l~gh~------------geI~~~~F~--P~gs~~aSgG~Dr~I~LWnv~gdceN~------------------- 83 (338)
T KOG0265|consen 37 QAPIMLLPGHK------------GEIYTIKFH--PDGSCFASGGSDRAIVLWNVYGDCENF------------------- 83 (338)
T ss_pred cchhhhcCCCc------------ceEEEEEEC--CCCCeEeecCCcceEEEEeccccccce-------------------
Confidence 34566788999 889999998 799999999999999999976532110
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+ +.+|.+.|..+.|.+|+..++++ .|.+|+.||.+++
T Consensus 84 ----------------------------------------~~-lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 84 ----------------------------------------WV-LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred ----------------------------------------ee-eccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 01 16999999999999999999998 9999999999955
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
+... +..+|...|.++.-+.-|..++.+++.||++++||+|+.... ++++. ...
T Consensus 123 ~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyq 176 (338)
T KOG0265|consen 123 KRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQ 176 (338)
T ss_pred eeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------cee
Confidence 4443 378899999999866667678899999999999999987654 55544 357
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
++++.|..++..+.+|. |+.|++||++. +.....+.||.+.+ +.+..+|+|.++.+-+.|.++
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred EEEEEecccccceeeccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceE
Confidence 89999999999888886 79999999996 88899999999987 899999999999999999999
Q ss_pred EEEecCCCCc---ceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCC
Q 010801 409 RIFSHGVGSA---GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 409 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
++||+...-. .+..+.+| ...++......+|+|++
T Consensus 241 rvwd~rp~~p~~R~v~if~g~------------------------------------------~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGH------------------------------------------IHNFEKNLLKCSWSPNG 278 (338)
T ss_pred EEEEecccCCCCceEEEeecc------------------------------------------hhhhhhhcceeeccCCC
Confidence 9999975411 11222222 12334456778999999
Q ss_pred CEEEEee-CCeEEEEeC
Q 010801 486 NLIACAN-GNSLFFHYA 501 (501)
Q Consensus 486 ~~la~~~-~~~~~i~~~ 501 (501)
+.+..++ +..+|+|++
T Consensus 279 ~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDT 295 (338)
T ss_pred CccccccccceEEEeec
Confidence 9988887 556999974
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3.1e-30 Score=220.07 Aligned_cols=299 Identities=16% Similarity=0.180 Sum_probs=227.4
Q ss_pred hhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee
Q 010801 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (501)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (501)
|+..+ ++ ...+.-+|++.|+|+.||.||.+||||+.+|.|+||+..++...
T Consensus 91 W~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-------------------------- 141 (399)
T KOG0296|consen 91 WDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-------------------------- 141 (399)
T ss_pred EEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE--------------------------
Confidence 66655 22 34455679999999999999999999999999999999988642
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+-.-- +.|.=++|+ |.+..|+.|+.||.+-+|.+.++...+++
T Consensus 142 -~~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv~-------------------- 186 (399)
T KOG0296|consen 142 -WKLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKVM-------------------- 186 (399)
T ss_pred -EEeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeEe--------------------
Confidence 2221122 557778888 67889999999999999999885433332
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|..++++=.|.|+|+.++++ .||+|++||..+..+.
T Consensus 187 -----------------------------------------~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 187 -----------------------------------------SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred -----------------------------------------cCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 7999999999999999999999 9999999999955443
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++ -..-.....++.++..+ ..++.|+.++.+++-+..+++... ...+ ........+...+.+
T Consensus 226 ~~~-------~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-----~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 226 HKI-------TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-----TVPELKPSQEELDES 288 (399)
T ss_pred EEe-------cccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-----CCccccccchhhhhh
Confidence 332 11123456788888888 899999999999999888876442 1110 011111233444555
Q ss_pred EEEee---CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 333 IKFAN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 333 ~~~sp---~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+.+.| .=.+.|+|+ ||+|.|||+.. .++.... .|...+ +.+.|-+ ..+|++++.+|.|
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~V---------------~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDGV---------------TKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred hhhcccccccchhhcccccceEEEEeccc-chhheec-cCCCce---------------EEEEEcC-cchheeeccCceE
Confidence 55544 445667776 69999999985 5544444 455554 7899998 6899999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
++||..+| .+..++.+|..+|.+.+++| ++++ +++++.|+. ++|
T Consensus 351 ~~wDaRtG-~l~~~y~GH~~~Il~f~ls~--~~~~-----vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 351 RQWDARTG-QLKFTYTGHQMGILDFALSP--QKRL-----VVTVSDDNTALVF 395 (399)
T ss_pred Eeeecccc-ceEEEEecCchheeEEEEcC--CCcE-----EEEecCCCeEEEE
Confidence 99999999 55599999999999999999 7777 999999998 776
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=211.74 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.+..|+|++ ...+.+++++.||++++||.....
T Consensus 61 D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~s--------------------------------------------- 94 (311)
T KOG0277|consen 61 DGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMPS--------------------------------------------- 94 (311)
T ss_pred cceeEeeecC-CCcceEEEEecCceEEEeccCCCC---------------------------------------------
Confidence 7899999995 445788899999999999943221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.++..+ +.|...|.++.|++ +++.++++ .|++|++|+.+ ..+.+.+ +.+|...|.
T Consensus 95 --------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~Iy 151 (311)
T KOG0277|consen 95 --------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSCIY 151 (311)
T ss_pred --------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccEEE
Confidence 233333 79999999999987 45566777 99999999998 4455554 789999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-CCc
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMN 349 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~-~~~ 349 (501)
..+|+|..++++++++.|+.+++||++..... ..++. |...|.++.|+.- ...|++|+ |+.
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccCCcEEEecCCCce
Confidence 99999998899999999999999999875322 22333 6678999999974 45666775 699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|+.||+++-..++.++.+|.-.+ ..+.|||. ...||+++.|-+++|||...+.....+..-|..
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE 279 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE 279 (311)
T ss_pred EEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce
Confidence 99999998888999999998876 78999996 568999999999999999987777788889999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eecc
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+..+.+++- ++.. +|+.+-|.. .+|+
T Consensus 280 Fv~g~Dws~~-~~~~-----vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 FVCGLDWSLF-DPGQ-----VASTGWDELLYVWN 307 (311)
T ss_pred EEeccccccc-cCce-----eeecccccceeeec
Confidence 9999999987 4444 688888887 7774
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=227.28 Aligned_cols=277 Identities=17% Similarity=0.301 Sum_probs=216.9
Q ss_pred cccceEEEEEccCCCE-EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~-latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+.|++++|||...+ +|+.+ .-++.||+..+.... +++....
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~---------------------------k~~srFk-------- 68 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR---------------------------KTFSRFK-------- 68 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh---------------------------hhHHhhc--------
Confidence 3578999999996543 34333 357999998765432 3333334
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.++.|. .||.+|++|...|.|++||+.+......
T Consensus 69 ----~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~r~iLR~------------------------------------- 105 (487)
T KOG0310|consen 69 ----DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKSRVILRQ------------------------------------- 105 (487)
T ss_pred ----cceeEEEee--cCCeEEEccCCcCcEEEeccccHHHHHH-------------------------------------
Confidence 779999997 8999999999999999999665432222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ .+|+.++..+.|+|++.. +++| +|+.+++||+. +... .. .+.+|+
T Consensus 106 -----------------------~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v-~~------~l~~ht 153 (487)
T KOG0310|consen 106 -----------------------L-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYV-QA------ELSGHT 153 (487)
T ss_pred -----------------------H-hhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEE-EE------EecCCc
Confidence 2 799999999999996554 5567 89999999999 4433 22 378999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..|++.+|+|..+.++++|+.||.|++||++.... .+.+. .|..+|..+.+-|.|..|++++.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCC
Confidence 99999999998767999999999999999998631 23332 36789999999999999999988
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||+.++++.+..+..|...+ +++.+..++..|++|+-|+.|++||+.+-+.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--------- 272 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--------- 272 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccceEE---------
Confidence 9999999987677777777677765 8999999999999999999999999765411
Q ss_pred CcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEE
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 498 (501)
..+ ..+.++|.+++.+|++..+++|-.||+..
T Consensus 273 ------v~s---------------------------------~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 273 ------VHS---------------------------------WKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ------EEe---------------------------------eecccceeeEEecCCCceEEEecccceee
Confidence 111 13344888999999999999998888654
No 61
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.6e-29 Score=237.92 Aligned_cols=301 Identities=13% Similarity=0.137 Sum_probs=210.0
Q ss_pred hhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE
Q 010801 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (501)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (501)
++.+.++..... -.|-..|+....++++..+++++.+.....|+..++... -.+...+ ..+ ...
T Consensus 5 k~rh~~g~~~k~--~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G-----~~~--~~~ 68 (493)
T PTZ00421 5 RFRHTQGVPARP--DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYG-----KLA--SNP 68 (493)
T ss_pred cccccccccCCc--ccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eeccccc-----cCC--CCC
Confidence 667777754433 345677888888888766777777777788886554211 0000000 000 011
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+| .++++|++|+.|++|++||+.++......
T Consensus 69 ~~l~GH~------------~~V~~v~fsP-~d~~~LaSgS~DgtIkIWdi~~~~~~~~~--------------------- 114 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAFNP-FDPQKLFTASEDGTIMGWGIPEEGLTQNI--------------------- 114 (493)
T ss_pred ceEeCCC------------CCEEEEEEcC-CCCCEEEEEeCCCEEEEEecCCCcccccc---------------------
Confidence 2467898 9999999983 27789999999999999999765321100
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
..++..+ .+|...|.+++|+|++ .+|++| .|++|+|||++. +..
T Consensus 115 --------------------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~~ 160 (493)
T PTZ00421 115 --------------------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GKA 160 (493)
T ss_pred --------------------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-CeE
Confidence 1122233 7899999999999985 688888 999999999994 444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc-cee
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SIS 331 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~ 331 (501)
... +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.. |.. ...
T Consensus 161 ~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~-------------H~~~~~~ 215 (493)
T PTZ00421 161 VEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEA-------------HASAKSQ 215 (493)
T ss_pred EEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEec-------------CCCCcce
Confidence 432 67799999999999999 99999999999999999987543 23333 333 345
Q ss_pred EEEEeeCCCEEEEEc-----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CC
Q 010801 332 DIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YS 405 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~d 405 (501)
.+.|.+++..+++++ |+.|++||++....++.....+.... +....|++++++|++++ .|
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCC
Confidence 678898877776532 48999999986445555444332211 13567899999999887 59
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccC
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 438 (501)
+.|++||+.++.........+..+...+++.|.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999999875443322345567778888774
No 62
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4e-30 Score=218.67 Aligned_cols=288 Identities=14% Similarity=0.218 Sum_probs=242.3
Q ss_pred CCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccc
Q 010801 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (501)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 165 (501)
..+..++..+.+++|. +-|.+|++- |.+++|++|+.|++|+|||+.+++++...
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vavd--P~n~wf~tgs~DrtikIwDlatg~Lkltl------------ 189 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAVD--PGNEWFATGSADRTIKIWDLATGQLKLTL------------ 189 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEeeC--CCceeEEecCCCceeEEEEcccCeEEEee------------
Confidence 3455788899999999 999999996 78899999999999999999999877654
Q ss_pred ccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEE
Q 010801 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (501)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iw 244 (501)
.+|...|..+++++...+++++ .|+.|+.|
T Consensus 190 -------------------------------------------------tGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 190 -------------------------------------------------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred -------------------------------------------------cchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 7899999999999999999998 99999999
Q ss_pred ECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
|++ ..+.++ ...+|-..|.+++.+|.- ..|++|+.|..+++||+++.... .++ .
T Consensus 221 DLe-~nkvIR-------~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l-------------~ 274 (460)
T KOG0285|consen 221 DLE-YNKVIR-------HYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVL-------------S 274 (460)
T ss_pred ech-hhhhHH-------HhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEe-------------c
Confidence 999 555554 368899999999999998 99999999999999999987533 333 5
Q ss_pred ecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
||..+|..+.+.|-...+++|+ |++|++||++. ++...++..|...+ .+++.+|....+|+++
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas 338 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASAS 338 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccC
Confidence 5889999999999777788886 69999999996 89899998888765 7899999999999999
Q ss_pred CCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc----------cccccc
Q 010801 404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH----------ELSYNL 472 (501)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~----------~~~~~~ 472 (501)
.| .|+-|++..+..+ ..+.+|...+..+.... ++. +++|+.+|. ..|+..... .-..+.
T Consensus 339 ~d-nik~w~~p~g~f~-~nlsgh~~iintl~~ns--D~v------~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s 408 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNS--DGV------LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES 408 (460)
T ss_pred Cc-cceeccCCccchh-hccccccceeeeeeecc--Cce------EEEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence 87 5899999998655 55999999999998886 443 688988888 888333111 112345
Q ss_pred CCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+..|.+.+|...|..|++|. +..|.+|.
T Consensus 409 EagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 409 EAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccceeEEeecccCceEEeccCCcceEEEe
Confidence 67899999999999998887 56688874
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.6e-29 Score=215.45 Aligned_cols=299 Identities=15% Similarity=0.200 Sum_probs=227.1
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
|+.++.+++-|.+|... ++++++|+.||.+++||..+......
T Consensus 98 pl~~~~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk~~~~~--------------------------------- 140 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGKSIKTI--------------------------------- 140 (423)
T ss_pred ccccccchhhhhhhccc----CceEEEeecCCeeEEEecCCceEEEE---------------------------------
Confidence 34455566888888763 67999999999999999875432221
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+|.++|.+++|.- ....|+++ .|.++++|-.+.+....... .
T Consensus 141 -----------------------------~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~ 187 (423)
T KOG0313|consen 141 -----------------------------VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----K 187 (423)
T ss_pred -----------------------------ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----h
Confidence 69999999888843 33358888 99999999998554443321 1
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc--c------cccceeecccccCCCcceeeecccceeEE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--D------HSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
...+|...|.++...++| ..+++|+.|.+|.+|+..+.... . +..+..+.......+...+.||..+|.++
T Consensus 188 ~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred HhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 235999999999999999 99999999999999993221100 0 00000000011122334678999999999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.|++ ...+.+++ |.+|+.||+.+ ++.+.++.+.... ++++.+|..++|++|+.|..|++||
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecC
Confidence 9998 44555554 79999999997 8888777766654 6999999999999999999999999
Q ss_pred cCCCC--cceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc---ccCCcccccccCCCeEEEEEccCCC
Q 010801 413 HGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 413 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~---~~~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
..++. ...+.+-+|.+.|..+.++|. +... |++|+.|+. ++|+ ....+....+|..+|.++.|+. +.
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~-----~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~ 401 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQ-----LVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GG 401 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCC-CceE-----EEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-Cc
Confidence 98753 346789999999999999997 5666 899999999 9993 3347778889999999999985 55
Q ss_pred EEEEee-CCeEEEEe
Q 010801 487 LIACAN-GNSLFFHY 500 (501)
Q Consensus 487 ~la~~~-~~~~~i~~ 500 (501)
.|++|+ ++.++||.
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 667666 77799885
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.3e-29 Score=240.59 Aligned_cols=318 Identities=13% Similarity=0.216 Sum_probs=225.0
Q ss_pred cccc-ccceEEEEEccCCCEEEEEe--cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 28 ELQD-VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 28 ~~~h-~~~v~~v~~s~~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+.| ...|.+++.+|||..+|||+ .||.++||+.+.-- +....... --.+.+.+...|.
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl---------~~~~~~~~------~l~k~l~~m~~h~--- 69 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL---------DEKEEKNE------NLPKHLCTMDDHD--- 69 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeecccccc---------chhhhhhc------ccchhheeecccc---
Confidence 3444 45699999999999999999 99999999966211 00000000 0122345566777
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|+|++|+ +||++||+|+.|+.|.+|.....-.......
T Consensus 70 ---------~sv~CVR~S--~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs----------------------------- 109 (942)
T KOG0973|consen 70 ---------GSVNCVRFS--PDGSYLASGSDDRLVMIWERAEIGSGTVFGS----------------------------- 109 (942)
T ss_pred ---------CceeEEEEC--CCCCeEeeccCcceEEEeeecccCCcccccc-----------------------------
Confidence 999999998 8999999999999999999874110000000
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.++. ..-...++...+ .+|...|..++|+|++.+++++ -|++|.|||..+. ..+++ +
T Consensus 110 -------~g~~------~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~v-------l 167 (942)
T KOG0973|consen 110 -------TGGA------KNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKV-------L 167 (942)
T ss_pred -------cccc------cccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeee-------e
Confidence 0000 000123455555 7999999999999999999999 9999999999955 55554 7
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+|...|-.+.|+|-| ++|++-+.|++|++|++.+-... +.+..+ ... ..-...+..+.|||||++|+
T Consensus 168 ~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~p-f~~------~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKP-FEE------SPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ecccccccceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccc-hhh------CCCcceeeecccCCCcCeec
Confidence 8999999999999999 99999999999999997664333 333331 110 01135688999999999999
Q ss_pred EEc-----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-----Cc------------EEEE
Q 010801 344 SRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFAT 401 (501)
Q Consensus 344 ~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~------------~l~s 401 (501)
+.. ..++.|.+-.+ -+.-..+-||..++ ..+.|+|. .+ .+|+
T Consensus 236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred chhhccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 863 16788888764 66667888998876 67888872 11 5677
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAW 481 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~ 481 (501)
|+.|++|.||.....+.+ +....-+...|++++|
T Consensus 300 gSqDrSlSVW~T~~~RPl----------------------------------------------~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPL----------------------------------------------FVIHNLFNKSIVDMSW 333 (942)
T ss_pred ecCCccEEEEecCCCCch----------------------------------------------hhhhhhhcCceeeeeE
Confidence 888888888877544322 1111224558999999
Q ss_pred ccCCCEEEEee-CCeEEEE
Q 010801 482 HPTTNLIACAN-GNSLFFH 499 (501)
Q Consensus 482 sp~~~~la~~~-~~~~~i~ 499 (501)
+|||-.|.+++ ++.++++
T Consensus 334 spdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALI 352 (942)
T ss_pred cCCCCeEEEEecCCeEEEE
Confidence 99998888777 4446665
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-28 Score=200.18 Aligned_cols=286 Identities=15% Similarity=0.183 Sum_probs=218.6
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
.++||+ .+++.|+++ .+|.+|.+++.|.+..+|-..+|+..-.
T Consensus 5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 478999 999999997 7999999999999999998877764433
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
| .+|.+.|+|+...-+.+.+++| .|.++++||++++++ +.
T Consensus 48 -------------------------------------y-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~-la 88 (327)
T KOG0643|consen 48 -------------------------------------Y-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ-LA 88 (327)
T ss_pred -------------------------------------e-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-EE
Confidence 3 7999999999999999999999 999999999995554 44
Q ss_pred eeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.+ ....+|..+.|+++| ++++.... .+.|.++|++....... ...+...+.-+...
T Consensus 89 ~~--------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----------s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 89 TW--------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID----------SEEPYLKIPTPDSK 149 (327)
T ss_pred Ee--------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc----------ccCceEEecCCccc
Confidence 32 245689999999999 87776654 47799999986431100 00011112234578
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
++.+.|.|-+++|++|. +|.|..||++++.+.+...+.|...+ +.+++++|..++++++.|.+-
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence 99999999999999996 59999999997556667777777755 799999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccc----------------cCCccccccc
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS----------------SGHHELSYNL 472 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~----------------~~~~~~~~~~ 472 (501)
++||+.+.. ..+++ ....|+++.+++|..+- . +..|+.+...+=.+ .+.+....+|
T Consensus 215 kl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~-V-----ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 215 KLVDVRTLE-VLKTY-TTERPVNTAAISPLLDH-V-----ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred eeeecccee-eEEEe-eecccccceecccccce-E-----EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 999999773 32443 45678999999996332 2 33333333233311 1444556789
Q ss_pred CCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 473 SSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
-++|+++||||+|+.-++|++|+ ++++
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999999999999999999877 5543
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.1e-30 Score=207.44 Aligned_cols=244 Identities=19% Similarity=0.323 Sum_probs=199.6
Q ss_pred cccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-++.+..|+|+++. +.+++++.||+++|||+... ..++..++.|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------s~Pi~~~kEH~-------- 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------SKPIHKFKEHK-------- 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--------------------------CcchhHHHhhh--------
Confidence 37889999999954 67788889999999994422 23678899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.++.|++ .+...++++|.|++|++|+....+-+.+
T Consensus 105 ----~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T------------------------------------- 142 (311)
T KOG0277|consen 105 ----REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT------------------------------------- 142 (311)
T ss_pred ----hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe-------------------------------------
Confidence 7799999985 5677888889999999999876653332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ .+|...|....|+|. +++++++ .|+++++||++..++.+. ++.|.
T Consensus 143 -----------------------f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~ 190 (311)
T KOG0277|consen 143 -----------------------F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHN 190 (311)
T ss_pred -----------------------e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEecc
Confidence 3 799999999999994 6677777 999999999997665543 57898
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~ 346 (501)
..|.++.|+.-..+++++|+.|+.|+.||+++-+. .+++ +.+|.-.|..+.|||.. ..|++++
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~e-----------L~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFE-----------LNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccc-----ccee-----------ecCCceEEEEEecCcchhhHhhhcc
Confidence 99999999987778999999999999999998642 1222 35688899999999964 5677777
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~ 413 (501)
|-+++|||...+...+.+...|...+ ..+.|++ ++.++|+.+.|+.++||+-
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence 59999999986566777788888765 6788887 5779999999999999983
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-29 Score=236.69 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=227.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|..++|+ |...+++++-..|.|++||.+-+.++..+
T Consensus 10 sRvKglsFH--P~rPwILtslHsG~IQlWDYRM~tli~rF---------------------------------------- 47 (1202)
T KOG0292|consen 10 SRVKGLSFH--PKRPWILTSLHSGVIQLWDYRMGTLIDRF---------------------------------------- 47 (1202)
T ss_pred ccccceecC--CCCCEEEEeecCceeeeehhhhhhHHhhh----------------------------------------
Confidence 789999998 67789999999999999999877644332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..|.++|+.++|+|.+.++++| +|..|++|+.. ..+++- ++.+|-..|+.
T Consensus 48 ---------------------deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclf-------tL~GHlDYVRt 98 (1202)
T KOG0292|consen 48 ---------------------DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLF-------TLLGHLDYVRT 98 (1202)
T ss_pred ---------------------hccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehh-------hhccccceeEE
Confidence 7999999999999999999999 99999999999 556654 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|++.- ..++++|.|-+|+||+..+++.+ .+++ ||...|++..|+|....+++++ |.+||
T Consensus 99 ~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----avlt-------------GHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 99 VFFHHEY-PWILSASDDQTIRIWNWQSRKCI----AVLT-------------GHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred eeccCCC-ceEEEccCCCeEEEEeccCCceE----EEEe-------------cCceEEEeeccCCccceEEEecccceEE
Confidence 9999998 89999999999999999998654 4444 4788999999999999999997 79999
Q ss_pred EEEeeCC-------CC---------------------ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 352 LWDIRMD-------ST---------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 352 lwd~~~~-------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
|||+.-- +. ..+.+.||+.. |+-++|+|.-.+|++|+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG---------------VNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG---------------VNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc---------------cceEEecCCcceEEecC
Confidence 9998520 00 01123334333 37799999999999999
Q ss_pred CCCeEEEEecCCCC-cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccc--cccCCCeEEE
Q 010801 404 YSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS--YNLSSKLLHL 479 (501)
Q Consensus 404 ~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~--~~~~~~i~~~ 479 (501)
+|..|++|.+...+ ...-+..+|.+.|.++.|.|. ..+ +.+.|.|+. ++|+...+.... ..-......+
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~--q~l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH--QDL-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCc--cce-----eEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 99999999997542 345677899999999999993 334 889999999 999766544332 2345678899
Q ss_pred EEccCCCEEEEeeCCeEEEEe
Q 010801 480 AWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~ 500 (501)
+-||..+++|+|-++|+.||.
T Consensus 299 aahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcceeeeecCCceEEEE
Confidence 999999999999999998884
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.9e-28 Score=224.32 Aligned_cols=415 Identities=12% Similarity=0.101 Sum_probs=284.0
Q ss_pred cccccceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE----------e
Q 010801 29 LQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK----------T 95 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 95 (501)
-+|.+-|.+++|...+. +||+++.|..||||.+.-+...+ ...++ .........|.+... .
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e---~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNERE---DSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccc---cccccccCCceeeeeeeEEEEEehhh
Confidence 36999999999998554 88999999999999987443210 00000 000011111211111 3
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
.+.||+ +-|+++.|+ |.+..|++++.|+++.+|...+..-+.......++. + -..+....
T Consensus 262 ll~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~----g--g~a~GF~g 321 (764)
T KOG1063|consen 262 LLMGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV----G--GSAGGFWG 321 (764)
T ss_pred hhcCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeecc----c--ccccceee
Confidence 345888 999999998 778899999999999999887653222221111110 0 11234555
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
..++++...+..-++ .|-.++|.............. .+|...|.+++|.|.|++|++. .|.+-++|-.-..++...
T Consensus 322 ~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH 398 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH 398 (764)
T ss_pred EEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccccccee
Confidence 666666655444433 677888884333333333333 8999999999999999999998 999999987652222222
Q ss_pred eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC---------------c--cc---------ccccc
Q 010801 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS---------------A--LC---------DHSAR 308 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~---------------~--~~---------~~~~~ 308 (501)
.+ ..-+-|...++|+++-+.. ..|++|.....+|+|+.... . .. .....
T Consensus 399 Ei----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 399 EI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 11 1235578889999998864 78999999999999987542 0 00 00000
Q ss_pred eee-----c-c----------------cccCC-----------CcceeeecccceeEEEEeeCCCEEEEEc------CCc
Q 010801 309 ILR-----D-A----------------AESHG-----------SKSFFTEIIASISDIKFANDGQHLLSRD------YMN 349 (501)
Q Consensus 309 ~~~-----~-~----------------~~~~~-----------~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~~~ 349 (501)
.+. + + .++|. ....+.||...|.+++.+|+|+++|++. ...
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 110 0 0 00000 0114689999999999999999999863 167
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEecc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAG 426 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~ 426 (501)
|++|+..+ -...+.+.+|.-.+ +.++|||||++|++.|.|.++.+|........ ....+.|
T Consensus 554 I~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H 617 (764)
T KOG1063|consen 554 IRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH 617 (764)
T ss_pred EEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc
Confidence 99999986 66777899998766 89999999999999999999999998665333 2348899
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccccCC----cc--cccccCCCeEEEEEccCC-----CEEEEeeCC
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTT-----NLIACANGN 494 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~----~~--~~~~~~~~i~~~~~sp~~-----~~la~~~~~ 494 (501)
..-|+...++| ++.+ ++++|+|++ ++|..... +. ....+...|++++|.|-- ..+|+|-..
T Consensus 618 tRIIWdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 618 TRIIWDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred ceEEEEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 99999999999 6776 999999999 99944322 11 356788999999998742 256777755
Q ss_pred e-EEEEe
Q 010801 495 S-LFFHY 500 (501)
Q Consensus 495 ~-~~i~~ 500 (501)
| |++|.
T Consensus 691 GeI~l~~ 697 (764)
T KOG1063|consen 691 GEIVLWR 697 (764)
T ss_pred cEEEEEe
Confidence 5 88886
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.3e-27 Score=188.06 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=225.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhcccc-ccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF-TSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
++..+.|.+++|+|.|.+.|+|+...+.+|-....-... +.. +....|+....+.-+.|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~-------------r~~hea~~~pp~v~~kr~khhk------ 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-------------RHAHEAAKQPPSVLCKRNKHHK------ 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc-------------ccccccccCCCeEEeeeccccC------
Confidence 345789999999999999999999999998765422110 000 112233333444455666
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|+|.+|+ |+|+++++|++|++|++...+...+...-
T Consensus 90 ------gsiyc~~ws--~~geliatgsndk~ik~l~fn~dt~~~~g---------------------------------- 127 (350)
T KOG0641|consen 90 ------GSIYCTAWS--PCGELIATGSNDKTIKVLPFNADTCNATG---------------------------------- 127 (350)
T ss_pred ------ccEEEEEec--CccCeEEecCCCceEEEEecccccccccC----------------------------------
Confidence 999999998 89999999999999999876654432210
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC----CCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
....+ .-|.+.|..++|-. .+.+|+++ .|..|++-|.. .++.+..
T Consensus 128 ---------------------~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a------ 178 (350)
T KOG0641|consen 128 ---------------------HDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA------ 178 (350)
T ss_pred ---------------------cceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee------
Confidence 00011 57889999999953 35567775 67888888887 4444442
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|.+.|.++ ++-++ -++++|+.|.+|++||++-.... .++.......+. ....|.+++..|.|++
T Consensus 179 -~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~gl------essavaav~vdpsgrl 245 (350)
T KOG0641|consen 179 -LSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGGL------ESSAVAAVAVDPSGRL 245 (350)
T ss_pred -ecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCCc------ccceeEEEEECCCcce
Confidence 78899988887 44556 89999999999999999987543 222220000000 1367999999999999
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC---C
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---S 417 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~ 417 (501)
|++|. |....+||++ .++.++.+..|...+ .++.|+|...++.+++.|..|++-|++.. +
T Consensus 246 l~sg~~dssc~lydir-g~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIR-GGRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred eeeccCCCceEEEEee-CCceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 99995 6999999999 599999999888765 79999999999999999999999999753 2
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
........|++.+....+.|. +-. +.+.+.|.. .+|..
T Consensus 310 l~~~vv~ehkdk~i~~rwh~~-d~s------fisssadkt~tlwa~ 348 (350)
T KOG0641|consen 310 LPIMVVAEHKDKAIQCRWHPQ-DFS------FISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEeccCceEEEEecCc-cce------eeeccCcceEEEecc
Confidence 224566789999889999885 222 577888888 88843
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-28 Score=213.74 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=205.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~ 108 (501)
.|.-+|.||+++|+.+++++++.+|+|.-|++.+++... ..+... . + -...+.....- ++|.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~------~i~~~~-e--v-~k~~~~~~k~~r~~h~------- 202 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDR------YIIERD-E--V-LKSHGNPLKESRKGHV------- 202 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccc------cccccc-h--h-hhhccCCCCccccccc-------
Confidence 589999999999999999999999999999999887530 000000 0 0 00011111111 2666
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++.+ +|+++|++|+.|..|.||+.++.+.++..
T Consensus 203 -----keil~~avS--~Dgkylatgg~d~~v~Iw~~~t~ehv~~~----------------------------------- 240 (479)
T KOG0299|consen 203 -----KEILTLAVS--SDGKYLATGGRDRHVQIWDCDTLEHVKVF----------------------------------- 240 (479)
T ss_pred -----ceeEEEEEc--CCCcEEEecCCCceEEEecCcccchhhcc-----------------------------------
Confidence 779999998 89999999999999999999987744432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|.+.|.+++|-.....++++ .|++|++|+++ ....+. ++.+|.
T Consensus 241 --------------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve-------tlyGHq 286 (479)
T KOG0299|consen 241 --------------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE-------TLYGHQ 286 (479)
T ss_pred --------------------------cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-------HHhCCc
Confidence 7999999999998877788887 99999999999 433443 378999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..|.++.....+ +.+-+|+.|+++++|++..... .++ .+|.+.+.+++|-.+. .+++|+|
T Consensus 287 d~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lif-------------rg~~~sidcv~~In~~-HfvsGSd 346 (479)
T KOG0299|consen 287 DGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIF-------------RGGEGSIDCVAFINDE-HFVSGSD 346 (479)
T ss_pred cceeeechhccc-ceEEeccccceeEEEeccccce-----eee-------------eCCCCCeeeEEEeccc-ceeeccC
Confidence 999999988877 7777888999999999954321 233 3456789999998654 5667765
Q ss_pred -CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 348 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|.|.+|++.+ .+++.+.....+..+...++..+ +.+++++..|...++|+|+.+|.|++|.+..+
T Consensus 347 nG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 347 NGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999986 88888776444433332222323 45689999999999999999999999999987
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-28 Score=226.74 Aligned_cols=240 Identities=18% Similarity=0.286 Sum_probs=204.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (501)
.+.|+++.|+++|++||+|..+|.|.|||....+.. ..+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---------------------------~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---------------------------RTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---------------------------ccccCCcC---------
Confidence 689999999999999999999999999998866543 55666 77
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 261 ---~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-------------------------------------- 295 (484)
T KOG0305|consen 261 ---SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-------------------------------------- 295 (484)
T ss_pred ---ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence 889999995 56889999999999999987652211
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+.+|...|..++|++|+.++++| .|+.+.|||.......+. +..|.+.
T Consensus 296 ----------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aA 345 (484)
T KOG0305|consen 296 ----------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAA 345 (484)
T ss_pred ----------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eecccee
Confidence 016899999999999999999999 999999999964444443 6789999
Q ss_pred eEEEEEecCCCcEEEEEeC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 270 ITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
|.+++|+|-...+||+|+. |++|++||..++... ..... ...|..+.|++..+-|+++ +
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence 9999999988789999765 999999999988655 22222 3689999999998877765 2
Q ss_pred --CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 --~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
++.|.||+..+ .+.+..+.+|...+ ..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 48999999987 88899999999876 78999999999999999999999998764
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=219.95 Aligned_cols=281 Identities=20% Similarity=0.236 Sum_probs=224.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-|.+.|..+.|-++...|++|+.|..|++|+...++. ....++.|-.
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~-------- 219 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL-------- 219 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC--------
Confidence 4889999999999989999999999999999887653 2445666666
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+++.|- +++..+++++.|+.+++|++.+.+....+
T Consensus 220 ----g~it~~d~d--~~~~~~iAas~d~~~r~Wnvd~~r~~~TL------------------------------------ 257 (459)
T KOG0288|consen 220 ----GNITSIDFD--SDNKHVIAASNDKNLRLWNVDSLRLRHTL------------------------------------ 257 (459)
T ss_pred ----CCcceeeec--CCCceEEeecCCCceeeeeccchhhhhhh------------------------------------
Confidence 889999996 88999999999999999999987755433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|+++.|......+++| .|.+|++||+. ...+.+.+ + ...
T Consensus 258 -------------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l--~~S 303 (459)
T KOG0288|consen 258 -------------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------L--PGS 303 (459)
T ss_pred -------------------------cccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------c--ccc
Confidence 7899999999998777678888 99999999999 45565542 2 234
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+..|+.++ ..+++|-.|+.|++||++..... ...+. .+.|+++..+++|..|.+.+ |
T Consensus 304 ~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 304 QCNDIVCSI---SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred cccceEecc---eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCC
Confidence 456666663 56999999999999999987654 33443 35899999999998888764 7
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
.++.+.|+++ ......+........ .+.+.+.|||++.|+++||.||.|+||++.+++.. ..++...
T Consensus 363 dtl~viDlRt-~eI~~~~sA~g~k~a-----------sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-~~l~~s~ 429 (459)
T KOG0288|consen 363 DTLKVIDLRT-KEIRQTFSAEGFKCA-----------SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-KVLSLST 429 (459)
T ss_pred Cceeeeeccc-ccEEEEeeccccccc-----------cccceeEECCCCceeeeccCCCcEEEEEccCceEE-EEeccCC
Confidence 9999999996 666666665443211 12278999999999999999999999999998554 6665554
Q ss_pred C--cccceeeccCCccccCccceeeeecccce-eec
Q 010801 428 N--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 428 ~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
. .|.++.|.+ .|+. |+++++++. .+|
T Consensus 430 s~~aI~s~~W~~--sG~~-----Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 SNAAITSLSWNP--SGSG-----LLSADKQKAVTLW 458 (459)
T ss_pred CCcceEEEEEcC--CCch-----hhcccCCcceEec
Confidence 4 499999999 4555 788888877 777
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=196.69 Aligned_cols=244 Identities=18% Similarity=0.233 Sum_probs=201.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+..|. ++|..++|+ -+|++.++++.|++|++|+...+.+++..
T Consensus 11 ~~l~~~q------------gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktY--------------------- 55 (307)
T KOG0316|consen 11 SILDCAQ------------GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTY--------------------- 55 (307)
T ss_pred eeecccc------------cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeee---------------------
Confidence 4567777 999999997 89999999999999999999887765543
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
.+|...|..++.+.|+..|++| .|..+.+||++++ +..
T Consensus 56 ----------------------------------------sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-kv~ 94 (307)
T KOG0316|consen 56 ----------------------------------------SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-KVD 94 (307)
T ss_pred ----------------------------------------cCCCceeeeccccccccccccCCCCceEEEEEcccC-eee
Confidence 7999999999999999999998 9999999999954 444
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+ .+.+|.+.|+.++|+.+. ..+++|+.|.++++||.++... ..++++.. -...|.++
T Consensus 95 R-------r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~Si 151 (307)
T KOG0316|consen 95 R-------RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSSI 151 (307)
T ss_pred e-------ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeEE
Confidence 4 389999999999999998 9999999999999999998643 22344443 24578888
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
..+ +..|++|+ ||+++.||++. ++...-+-+|+- ++++|++|++.+..++.|+++++.|
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecc
Confidence 776 56777775 79999999996 776655555543 7999999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
-++| ++.+.+++|++.-+.+.......... .++|+.||. .+|+..
T Consensus 212 k~tG-klL~sYkGhkn~eykldc~l~qsdth-----V~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 212 KETG-KLLKSYKGHKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFWDLV 257 (307)
T ss_pred cchh-HHHHHhcccccceeeeeeeeccccee-----EEeccCCceEEEEEec
Confidence 9999 55589999998777666555434444 899999999 999544
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.4e-29 Score=233.42 Aligned_cols=301 Identities=13% Similarity=0.157 Sum_probs=204.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC----CCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP----SFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 189 (501)
+.|+++.|+ +||++||+|+.|+.|+||.+...+.......... ++...+.......+.... .......-.
T Consensus 268 gaIw~mKFS--~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~----~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 268 GAIWAMKFS--HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS----CMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred CcEEEEEeC--CCCceeeecCCCceEEEEEEeccchhcccccccc----hhhhhhhhccccCcccccccccccccccccc
Confidence 999999998 8999999999999999999987443221111100 011111100000000000 000000000
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
......+.+-+........++..| .+|.+.|.+|+|+.++ +|+++ .|.+|+||++. .+.++++ ..|..
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCC
Confidence 001111222223333345677777 8999999999999876 67776 99999999999 6778874 46999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~- 347 (501)
.|+||+|+|-.+++|++|+.||.||||++...+.. .|.. -..-|++++|.|||++.+.|+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEec
Confidence 99999999988899999999999999999887543 2222 1357999999999999999985
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
|.+++|++. +.+....+..+...... . .... |+++.|.|. ...|++.+.|..|||+|.... .+...+++.
T Consensus 473 G~C~fY~t~-~lk~~~~~~I~~~~~Kk---~-~~~r---ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~ 543 (712)
T KOG0283|consen 473 GYCRFYDTE-GLKLVSDFHIRLHNKKK---K-QGKR---ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGF 543 (712)
T ss_pred cEEEEEEcc-CCeEEEeeeEeeccCcc---c-cCce---eeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhccc
Confidence 999999997 36665555433221100 0 0012 378999874 335778889999999999665 455788877
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+.-..+..+-..+|++ +++++.|.. .+|+..
T Consensus 544 ~n~~SQ~~Asfs~Dgk~-----IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKH-----IVSASEDSWVYIWKND 576 (712)
T ss_pred ccCCcceeeeEccCCCE-----EEEeecCceEEEEeCC
Confidence 77666555555559999 999998888 999653
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=216.51 Aligned_cols=263 Identities=15% Similarity=0.235 Sum_probs=214.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|+|+.+ |+..+++|..|++|++||..+..+....
T Consensus 198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~L---------------------------------------- 233 (499)
T KOG0281|consen 198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKIL---------------------------------------- 233 (499)
T ss_pred CceEEEEe----cchhhhcccccCceEEeccccHHHHHhh----------------------------------------
Confidence 78999998 5678999999999999999887655433
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|.+.|.|+.|. .+.+++| .|.+|++||++ .++++++ +-.|...|..
T Consensus 234 ---------------------~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~t-------lihHceaVLh 282 (499)
T KOG0281|consen 234 ---------------------TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNT-------LIHHCEAVLH 282 (499)
T ss_pred ---------------------hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhH-------HhhhcceeEE
Confidence 7999999999984 5589999 99999999999 6666664 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+. .++++++.|.++.+||+...... . .+..+.||...|+.+.|+ .+||++++ |.+|+
T Consensus 283 lrf~n---g~mvtcSkDrsiaVWdm~sps~i----t----------~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 283 LRFSN---GYMVTCSKDRSIAVWDMASPTDI----T----------LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred EEEeC---CEEEEecCCceeEEEeccCchHH----H----------HHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 99984 58999999999999999875421 1 122345688999999997 56999885 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+|++.+ ...++++.+|...+ .+.-..++++++|+.|.+|++||++.|.++ ..+++|..-|+
T Consensus 344 vW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvR 404 (499)
T KOG0281|consen 344 VWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVR 404 (499)
T ss_pred EEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhh
Confidence 999987 99999999998764 333347899999999999999999999665 89999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccC-----------CcccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
++.|... . +++|..||+ ++|+... .+.....|++.|..+.|. ...|++++ ++.+.|
T Consensus 405 ciRFd~k----r-----IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi 473 (499)
T KOG0281|consen 405 CIRFDNK----R-----IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI 473 (499)
T ss_pred heeecCc----e-----eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE
Confidence 9999643 3 899999999 9994431 112345788899999884 44555555 888999
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|+
T Consensus 474 Wd 475 (499)
T KOG0281|consen 474 WD 475 (499)
T ss_pred EE
Confidence 97
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=215.10 Aligned_cols=291 Identities=20% Similarity=0.259 Sum_probs=227.1
Q ss_pred hhhhhccCCCCCCccccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee
Q 010801 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (501)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (501)
++.-.|.++-....-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++.
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------------------- 102 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------------------- 102 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------------------
Confidence 455567777767777899999999999977 78999999999999999866543
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+++|. +.|..|++. . ..+++++.|++|+.|.++.. ....
T Consensus 103 -~~f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~-p~~t--------------------- 143 (433)
T KOG0268|consen 103 -RTFKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGP-PLHT--------------------- 143 (433)
T ss_pred -heeeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCC-ccee---------------------
Confidence 7899999 999999995 2 67899999999999998763 1111
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 253 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 253 (501)
+ --...+..+.-+..+..++++ ...|.|||... ..++
T Consensus 144 ---------------------------------------i--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R-~~Pv 180 (433)
T KOG0268|consen 144 ---------------------------------------I--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQR-DNPV 180 (433)
T ss_pred ---------------------------------------e--ecccccccccccccccccccc-Cceeeeccccc-CCcc
Confidence 1 112344455555555566665 23589999883 3333
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+. +.--...|.++.|+|-...+|+++..|+.|.+||++++....+ +... ..-+.+
T Consensus 181 ~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K---Vi~~---------------mRTN~I 235 (433)
T KOG0268|consen 181 SS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK---VILT---------------MRTNTI 235 (433)
T ss_pred ce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce---eeee---------------ccccce
Confidence 32 3334567899999999867888998999999999999877642 2222 356889
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+|+|.+-.+++|+ |..++.||++....++....+|...+ .+++|||.|+-+++||.|.+|+||.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEee
Confidence 9999766666665 69999999998788888888888876 7999999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+..+..........-..|.++.++. |.++ +++|+.|+. ++|
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~--Dsky-----i~SGSdd~nvRlW 342 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSM--DSKY-----IISGSDDGNVRLW 342 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEec--cccE-----EEecCCCcceeee
Confidence 9887655333344455788999998 8888 999999999 999
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.8e-27 Score=244.80 Aligned_cols=259 Identities=13% Similarity=0.176 Sum_probs=193.8
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.+...|.+++|++ ++.+||+++.||+|+|||+.+++. ...+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~------ 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHE------ 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCC------
Confidence 34567899999987 578999999999999999986643 36788998
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|++++|+| +++.+|++|+.|++|++||+.++......
T Consensus 576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---------------------------------- 614 (793)
T PLN00181 576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI---------------------------------- 614 (793)
T ss_pred ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE----------------------------------
Confidence 8899999983 46789999999999999999876643321
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.. ...+.++.|+ +++..|++| .|+.|++||++........ +.+
T Consensus 615 ---------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~ 659 (793)
T PLN00181 615 ---------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIG 659 (793)
T ss_pred ---------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecC
Confidence 22 3468899994 578999999 9999999999854433332 568
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.++.|. ++ ..|++++.|+.|++||++...... .......+.+|...+..++|+|++.+|++|
T Consensus 660 h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 660 HSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred CCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 99999999997 55 789999999999999997542100 001112345678889999999999999999
Q ss_pred c-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+ |+.|++|+... ..++..+... ...+.... . ......+.+++|+|++.+|++|+.||.|+||++
T Consensus 727 s~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~-~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE-V--DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCEEEEEECCC-CCceEEEecccCCcccccc-c--CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 6 59999999864 4444333211 11110000 0 011112479999999999999999999999986
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-27 Score=216.77 Aligned_cols=248 Identities=18% Similarity=0.249 Sum_probs=189.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-..+-++|+ ..+.||+|. ...|++|+..+++.. ....-++
T Consensus 177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~---------- 217 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE---------- 217 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC----------
Confidence 3455667888 466788875 458999999887542 1122224
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+++.|+ ++|.+|++|..+|.|.|||..+.+.....
T Consensus 218 --~~vtSv~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------------------------- 255 (484)
T KOG0305|consen 218 --ELVTSVKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------------------------- 255 (484)
T ss_pred --CceEEEEEC--CCCCEEEEeecCCeEEEEehhhccccccc--------------------------------------
Confidence 789999998 89999999999999999999876644332
Q ss_pred cCcceEEEeccCceeeeeeEeecCC-cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+ |...|-+++|+ +..+.+| .++.|..+|++....... .+.+|...
T Consensus 256 -----------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qe 303 (484)
T KOG0305|consen 256 -----------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQE 303 (484)
T ss_pred -----------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhcccce
Confidence 34 89999999998 5678888 999999999996555443 27889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc--
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-- 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-- 346 (501)
|..++|++++ ++|++|+.|+.+.|||....... ..+ .+|.+.|.+++|+| ...+||+|+
T Consensus 304 VCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~----~~~-------------~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 304 VCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPK----FTF-------------TEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred eeeeEECCCC-CeeccCCCccceEeccCCCcccc----EEE-------------eccceeeeEeeeCCCccCceEEcCCC
Confidence 9999999999 99999999999999999554332 233 44789999999999 566888873
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCCCcceEEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|++|++||+.+ ++.+..+...... .++.|++..+-|+++ -.++.|.||+..+. .+...+
T Consensus 366 ~D~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l 427 (484)
T KOG0305|consen 366 ADRCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL 427 (484)
T ss_pred cccEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee
Confidence 59999999986 8877777655442 789999998666653 34789999999875 222444
Q ss_pred ecccC
Q 010801 424 EAGKN 428 (501)
Q Consensus 424 ~~~~~ 428 (501)
.+|..
T Consensus 428 ~gH~~ 432 (484)
T KOG0305|consen 428 LGHTS 432 (484)
T ss_pred cCCcc
Confidence 44443
No 79
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.5e-26 Score=220.55 Aligned_cols=239 Identities=18% Similarity=0.257 Sum_probs=169.2
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+..+.+|. +.|.+++|+| .++.+|++|+.|++|++||+.++... ...
T Consensus 66 ~v~~L~gH~------------~~V~~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~i------------------ 114 (568)
T PTZ00420 66 PVIKLKGHT------------SSILDLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKEI------------------ 114 (568)
T ss_pred eEEEEcCCC------------CCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCCcccccc------------------
Confidence 456788999 8999999983 13689999999999999999764311 000
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cCCeEEEEECCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEIS 249 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~ 249 (501)
..+...+ .+|...|.+++|+|++..+ +++ .|++|++||++..
T Consensus 115 -----------------------------------~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 115 -----------------------------------KDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred -----------------------------------ccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 0111222 6899999999999998765 577 9999999999954
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
..... +. |...|.+++|+|+| .+|++++.|+.|++||+++++.. ..+.. |.+.
T Consensus 159 ~~~~~--------i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~g-------------H~g~ 211 (568)
T PTZ00420 159 KRAFQ--------IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHI-------------HDGG 211 (568)
T ss_pred cEEEE--------Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEec-------------ccCC
Confidence 43322 22 45679999999999 99999999999999999987643 33333 4443
Q ss_pred e-----eEEEEeeCCCEEEEEc-C----CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 330 I-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 330 i-----~~~~~sp~~~~l~~~~-~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+ ....|++++.+|++++ + ++|+|||++...+++..+..+..... + ......++|.++
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~----------L---~p~~D~~tg~l~ 278 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP----------L---IPHYDESTGLIY 278 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc----------e---EEeeeCCCCCEE
Confidence 3 2234568888888753 3 37999999865677766654332210 0 122334568899
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccC
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 438 (501)
++|+.|+.|++|++..+.........+..+...++|.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 999999999999998763222222235677888888885
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-26 Score=191.74 Aligned_cols=274 Identities=18% Similarity=0.228 Sum_probs=212.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|+++.|+ .+|.++++++.|.+++|||..+++..+..
T Consensus 15 ~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti---------------------------------------- 52 (311)
T KOG1446|consen 15 GKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTI---------------------------------------- 52 (311)
T ss_pred CceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEe----------------------------------------
Confidence 779999998 89999999999999999999998876654
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..+...+..+.|...... +.+. .|.+|+.-++. ..+.++. +.+|...|
T Consensus 53 ---------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V 103 (311)
T KOG1446|consen 53 ---------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV 103 (311)
T ss_pred ---------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence 344556677778544444 4444 59999999999 5566664 89999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
.+++.+|-+ ..+++++.|++|++||++..+.. ..+.. ..-..++|.|+|-++|++.. +.
T Consensus 104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence 999999998 99999999999999999965432 22222 34566889999999999876 69
Q ss_pred EEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|++||++.- ..+..++........ ..+.+.|||||++|..+...+.+++.|.-.|. +..++..+..
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~ 230 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN 230 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence 999999863 456666654422110 11689999999999999999999999999884 5577776665
Q ss_pred cc---cceeeccCCccccCccceeeeecccce-eec--cccCCcccccc-cCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 429 EN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 429 ~v---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
.- -..+|.| ++++ +.+|+.||. .+| ..+..+....+ +..++.++.|+|.-.++|+++.. +.+|
T Consensus 231 ~~~~~~~a~ftP--ds~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~-l~fw 300 (311)
T KOG1446|consen 231 AGNLPLSATFTP--DSKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN-LVFW 300 (311)
T ss_pred CCCcceeEEECC--CCcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce-EEEE
Confidence 44 4566677 8888 999999999 999 44445555555 57889999999998888877654 4444
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-26 Score=192.88 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=210.0
Q ss_pred cccceEEEEEcc-CCCEEEEEecCCcEEEEEecCC-cCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.+.|.+++||| ...+++.|+-||+||+|+++.. ... . +....|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-------------------------~-ka~~~~~------- 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-------------------------P-KAQQSHD------- 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-------------------------c-hhhhccC-------
Confidence 368899999999 5566778999999999999863 221 1 3345566
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+++|+ .+|..+++|+.|+.+++||+.+++...+
T Consensus 73 -----~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v------------------------------------ 109 (347)
T KOG0647|consen 73 -----GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQV------------------------------------ 109 (347)
T ss_pred -----CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeee------------------------------------
Confidence 999999998 7899999999999999999999875543
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..|.++|.++.|-+... .|++| .|++|+.||.+... .+..+.
T Consensus 110 --------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~-------- 154 (347)
T KOG0647|consen 110 --------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQ-------- 154 (347)
T ss_pred --------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeee--------
Confidence 57899999999976554 88999 99999999999444 443321
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
..+.++++..- . .+++++..++.|.+|+++++.... +..+. | ..-.+.+++..+|.+..+.|
T Consensus 155 LPeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~te~---k~~~S----p--------Lk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 155 LPERVYAADVL--Y-PMAVVATAERHIAVYNLENPPTEF---KRIES----P--------LKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred ccceeeehhcc--C-ceeEEEecCCcEEEEEcCCCcchh---hhhcC----c--------ccceeeEEEEEecCCceEee
Confidence 23456665543 3 678999999999999998864332 11111 1 12458899999988877777
Q ss_pred c-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+ +|.+.+..+.. . +.-.+|+.|..... ..+.++.|.+++|+|....|++++.||++.+||-+.. ...++
T Consensus 217 siEGrv~iq~id~-~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~ 288 (347)
T KOG0647|consen 217 SIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKT 288 (347)
T ss_pred eecceEEEEecCC-CCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhc
Confidence 6 59999998874 4 44566777775322 1225778899999999999999999999999998765 44588
Q ss_pred EecccCcccceeeccCCcccc
Q 010801 423 VEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.+.|..+|.+..|+. +|.+
T Consensus 289 s~~~~qpItcc~fn~--~G~i 307 (347)
T KOG0647|consen 289 SETHPQPITCCSFNR--NGSI 307 (347)
T ss_pred cCcCCCccceeEecC--CCCE
Confidence 889999999999998 6766
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=202.42 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=198.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.++...|....++||+.|..+.++|...++. +..+.||.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~---------- 261 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHT---------- 261 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcc----------
Confidence 45789999999888999999999999999887664 38899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+.+.|+ ++...+++++.|..|++|...........
T Consensus 262 --kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~~-------------------------------------- 299 (506)
T KOG0289|consen 262 --KKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTSS-------------------------------------- 299 (506)
T ss_pred --eEEEEEEec--cchhheeecCCcceEEeeccccccCcccc--------------------------------------
Confidence 889999998 77789999999999999998765422221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|..+|+.+..+|.|.+|+++ .|++..+.|++++....... -+...-.+
T Consensus 300 -----------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ 350 (506)
T KOG0289|consen 300 -----------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEY 350 (506)
T ss_pred -----------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------ecccccee
Confidence 6899999999999999999999 99999999999555443321 11233468
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
++.+|+||| .+|.+|..||.|++||+.++... .. |.+|.++|..++|+.+|-||+++.| +.
T Consensus 351 ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 351 TSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred EEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCe
Confidence 999999999 99999999999999999887532 22 4568999999999999999999865 88
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|++||++. .+...++...... .+.+++|.+.|.+|+.++.|=.|++++-.+.
T Consensus 413 V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 413 VKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred EEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 99999996 6666666644432 1268999999999999988877777765444
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.3e-25 Score=199.70 Aligned_cols=382 Identities=11% Similarity=0.104 Sum_probs=264.8
Q ss_pred CCCCccccccceEEEEEccCCCEEEEEecCC--------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEe
Q 010801 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKT 95 (501)
Q Consensus 24 ~~~~~~~h~~~v~~v~~s~~g~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (501)
.+..-..|++.|.|++.+||.-.+|+|-..| .++|||..+-.. +.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~ 148 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LH 148 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------ee
Confidence 3344567999999999999999999876555 589999664322 23
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEe--eCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~--s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
.+...+ ..|.+++|++...|.+++.. +.+..+.+||.+.+......+ ..+..+
T Consensus 149 V~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-------------~sne~v 203 (626)
T KOG2106|consen 149 VIGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-------------TSNEVV 203 (626)
T ss_pred eecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-------------eccceE
Confidence 333334 77999999976667777665 577889999988664322110 011223
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
..+.+.|....+.... ..+.+.+|+.+.....+-...+.......|.|++|.++|. +++| ++|.|.||+.. ..+.
T Consensus 204 ~~a~FHPtd~nliit~--Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~ 279 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITC--GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRI 279 (626)
T ss_pred EEEEeccCCCcEEEEe--CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceE
Confidence 3333333333222221 2678999999987766666666445567899999999985 6778 99999999987 4444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc-------ccc-eeeccc----------
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAA---------- 314 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~-~~~~~~---------- 314 (501)
.+. ...|.+.|.+++.-.+| . |++|+.|+.|..||-.-.+.... .++ +.+++.
T Consensus 280 ~k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 280 SKQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 443 33899999999999998 5 55599999999999332211100 001 111100
Q ss_pred -----ccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 315 -----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 315 -----~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..........+|......++.+|+...+++++ |+.+++|+ . .+++.+....... .
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~ 411 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------E 411 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------e
Confidence 00001112367888999999999988888765 69999999 2 5666555444333 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CC
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH 465 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~ 465 (501)
++.|+|.| .+|.|+..|...+.|.++. .+ .++.....++..+.++| +|.+ ||.|+.|+. .++..+ +.
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCc
Confidence 89999999 9999999999999999984 33 44444588999999999 7888 999999999 999443 22
Q ss_pred ccccc--ccCCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 466 HELSY--NLSSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 466 ~~~~~--~~~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
..... -+.++|+++.||+|+++|.+.+.|- +..|
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 22211 1228999999999999999999776 4444
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-27 Score=196.08 Aligned_cols=321 Identities=16% Similarity=0.190 Sum_probs=237.7
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+|.+.|+.++-......+.+++.|.+-+||.++++.++ .++.||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL---------------------------~~Y~GH~------ 190 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL---------------------------ATYTGHT------ 190 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccce---------------------------eeecccc------
Confidence 3469999999999988889999999999999999988765 8899999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee----eeccCCCcccccccccccccCccccCCCCCCc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.|++|+|+ +.+.++++++.|++..||...-.-... ...+...++ .. .+....
T Consensus 191 ------GSVNsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE------------~e---~sDe~~ 247 (481)
T KOG0300|consen 191 ------GSVNSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE------------EE---HSDEHN 247 (481)
T ss_pred ------cceeeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh------------hh---cccccc
Confidence 999999998 678899999999999999743110000 000000000 00 000000
Q ss_pred ccccceeccCc-ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~-~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
-..++...+++ .|++ ++..+ .+|.+.|.+..|-..|+.++++ .|.+..+||++ .+..+.+
T Consensus 248 ~d~d~~~~sD~~tiRv----------Pl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~------ 309 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRV----------PLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI------ 309 (481)
T ss_pred cccccccccCCceeee----------eeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc------
Confidence 00111111111 2332 33344 7999999999999999999999 99999999999 5666664
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|....+.++-+|.. +++++.+.|.+.++||.+..- +...+ |.||...|+++.|.-+.+
T Consensus 310 -LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI---~sV~V-------------FQGHtdtVTS~vF~~dd~- 370 (481)
T KOG0300|consen 310 -LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI---QSVAV-------------FQGHTDTVTSVVFNTDDR- 370 (481)
T ss_pred -ccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc---ceeee-------------ecccccceeEEEEecCCc-
Confidence 89999999999999998 999999999999999998531 11233 456889999999998665
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc-
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG- 419 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~- 419 (501)
+++|+ |.+|++||+++...++.++...... +.++.+..++.|+.--.+..|++||+...+..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 56665 5999999999877888888765543 68999988889999999999999999754221
Q ss_pred --eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 420 --GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 420 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
...-++|..-|.+.++....+..- |.+++.|.. .-|+.
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cn-----LftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACN-----LFTCGFDRMVAGWKI 475 (481)
T ss_pred CCcccccccceeeeeeeccccCcccc-----cccccccceeeeeEe
Confidence 123468888899999986544333 778888877 66743
No 85
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.4e-26 Score=216.53 Aligned_cols=219 Identities=14% Similarity=0.144 Sum_probs=164.9
Q ss_pred ccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|.+.|++++|+| ++++||+|+.||+|+|||+.++... ......+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~----- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT----- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence 346999999999999 8899999999999999999765321 00122456788998
Q ss_pred ccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ |+ +.+|++++.|++|+|||+.+++.....
T Consensus 126 -------~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------------------------- 164 (493)
T PTZ00421 126 -------KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAVEVI-------------------------------- 164 (493)
T ss_pred -------CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEEEEE--------------------------------
Confidence 889999998 44 468999999999999999887643322
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|.+++|+|+|.+|+++ .|+.|++||++++. .+.. +.
T Consensus 165 -----------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~t-------l~ 207 (493)
T PTZ00421 165 -----------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSS-------VE 207 (493)
T ss_pred -----------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEE-------Ee
Confidence 5788899999999999999999 99999999999544 4332 45
Q ss_pred Ccccc-eEEEEEecCCCcEEEEEe----CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+|... +..+.|.+++ ..+++++ .|+.|++||+++..... ..... .+...+....|++++
T Consensus 208 ~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~~------------d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 208 AHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY---STVDL------------DQSSALFIPFFDEDT 271 (493)
T ss_pred cCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce---eEecc------------CCCCceEEEEEcCCC
Confidence 66543 4567889887 6666543 47999999998754221 11111 012356667899999
Q ss_pred CEEEEEc--CCcEEEEEeeCCCCceeEee
Q 010801 340 QHLLSRD--YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 340 ~~l~~~~--~~~i~lwd~~~~~~~~~~~~ 366 (501)
++|++++ |+.|++||+.. ++++....
T Consensus 272 ~~L~lggkgDg~Iriwdl~~-~~~~~~~~ 299 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMN-ERLTFCSS 299 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeC-CceEEEee
Confidence 9888763 79999999985 66665543
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.9e-26 Score=189.65 Aligned_cols=275 Identities=15% Similarity=0.156 Sum_probs=207.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+.|.|+|.++.|++++-||++++|++...+.. ..-.|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence 578999999999999999999999999998866431 122355
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.++.+.+|. +...+++|+.||.|+++|+.++....+
T Consensus 55 --~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~~~i--------------------------------------- 90 (323)
T KOG1036|consen 55 --APLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNEDQI--------------------------------------- 90 (323)
T ss_pred --Cceeeeecc---CCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence 889999995 577899999999999999998764332
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...|.|+.+++....+++| .|++|++||.+ ....... ......|
T Consensus 91 -----------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~--------~d~~kkV 138 (323)
T KOG1036|consen 91 -----------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGT--------FDQGKKV 138 (323)
T ss_pred -----------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-ccccccc--------cccCceE
Confidence 5889999999999887788888 99999999998 3332221 1233478
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.++... + +.|++|+.|..|.+||+++.....+ .-+ ...+-.+.++++-|++.-.++++ +|.
T Consensus 139 y~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q---~re------------S~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 139 YCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQ---RRE------------SSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred EEEecc--C-CEEEEeecCceEEEEEcccccchhh---hcc------------ccceeEEEEEEEecCCCceEEEeecce
Confidence 888766 3 6799999999999999998653320 000 11234689999999877666554 788
Q ss_pred EEEEEeeCCC----CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 350 LKLWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 350 i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|.+=.++. . +....|+.|.... ...+.+++|++++|+|-...+|||+.||.|.+||+.+.+.+
T Consensus 201 VavE~~d~-s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl------ 267 (323)
T KOG1036|consen 201 VAVEYFDD-SEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL------ 267 (323)
T ss_pred EEEEccCC-chHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh------
Confidence 88766653 3 3445677776542 23456668899999999999999999999999999877443
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
....+++..|..++|+.+|..||+++
T Consensus 268 -----------------------------------------~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 -----------------------------------------KQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred -----------------------------------------hhccCCCCceEEEEeccCCCeEEEEe
Confidence 11122344688899999999999887
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=8.7e-27 Score=194.86 Aligned_cols=303 Identities=16% Similarity=0.213 Sum_probs=215.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee-eeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+..|+ +++.+-+|+ +||.++++|+.|..|+|.|++..-.+. ..++...
T Consensus 106 ~ylt~HK------------~~cR~aafs--~DG~lvATGsaD~SIKildvermlaks~~~em~~~--------------- 156 (430)
T KOG0640|consen 106 KYLTSHK------------SPCRAAAFS--PDGSLVATGSADASIKILDVERMLAKSKPKEMISG--------------- 156 (430)
T ss_pred EEEeecc------------cceeeeeeC--CCCcEEEccCCcceEEEeehhhhhhhcchhhhccC---------------
Confidence 4466787 889999998 899999999999999999987421110 0000000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC--
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-- 250 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-- 250 (501)
+.....-.++++ ..|...|+++.|+|....|++| .|++|++||+....
T Consensus 157 ----------------------------~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK 207 (430)
T KOG0640|consen 157 ----------------------------DTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK 207 (430)
T ss_pred ----------------------------CcccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHH
Confidence 000001133444 7899999999999999999999 99999999998332
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+..+ .-.-..+|+++.|+|.| .+|++|..-..+++||+.+.+. |-. .+ | -.+|.+.|
T Consensus 208 rA~K--------~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qc-------fvs-an-P-----d~qht~ai 264 (430)
T KOG0640|consen 208 RAFK--------VFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQC-------FVS-AN-P-----DDQHTGAI 264 (430)
T ss_pred HHHH--------HhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeE-------eee-cC-c-----ccccccce
Confidence 1111 12234689999999999 9999999999999999988642 222 11 1 24588999
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+++.+++.|++.++++ ||.|++||--. ++++.++. .|.+.. |.+..|..+|++|.+.+.|..+
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gse--------------vcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSE--------------VCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCce--------------eeeEEEccCCeEEeecCCccee
Confidence 9999999999999997 69999999875 78888775 344321 2689999999999999999999
Q ss_pred EEEecCCCCcceEEEecc-----cCcccceeeccCCccccCccceeeeecccce-eeccc---cCCcccccccCCCeEEE
Q 010801 409 RIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHL 479 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~---~~~~~~~~~~~~~i~~~ 479 (501)
++|.+.+++.+ +++.+- ...-+...|....+.- |.---..+. .-|+. .+......+|.+.+..+
T Consensus 330 kLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyV------l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 330 KLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTEDYV------LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred eeeeecCCceE-EEEecCCcccchhhhhhhhhcCccceE------EccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 99999999665 333322 2222333444432211 111122223 66722 23334467899999999
Q ss_pred EEccCCCEEEEeeCCe-EEEEe
Q 010801 480 AWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.-||.+.-..++++|. .++|+
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred EeCCCCCceeeecccceeeeee
Confidence 9999999999988665 88886
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=222.32 Aligned_cols=271 Identities=16% Similarity=0.252 Sum_probs=221.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...+.+..|. ..++++++.|++|.+|+..++.. ....+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence 46778889988 56789999999999999887654 334499999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|+++++. ..+..+++|+.|+++++||..++++....
T Consensus 250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l------------------------------------- 287 (537)
T KOG0274|consen 250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSL------------------------------------- 287 (537)
T ss_pred ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------------------------
Confidence 999999996 46789999999999999999998876654
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+|...|.++... ...+++| .|.+|++|+++ .+.++.+ +.+|..+
T Consensus 288 ------------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~ 333 (537)
T KOG0274|consen 288 ------------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGP 333 (537)
T ss_pred ------------------------cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------ecccccc
Confidence 7899999998764 3467777 99999999999 6667765 5669999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+++..+ + .++++|+.|++|++||..+++.. +.+ .+|...|.++.+.+. ..+++|+ |+
T Consensus 334 V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl-------------~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 334 VNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSL-------------SGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEEEec--C-CEEEEEecCceEEEEEhhhceee----eee-------------cCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999998 5 78999999999999999987554 443 458899999988765 7888885 69
Q ss_pred cEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-c
Q 010801 349 NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G 426 (501)
Q Consensus 349 ~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 426 (501)
+|++||+++ . +++.++.+|...+ ..+. ..+++|++++.|++|++||..+++.+ .++++ |
T Consensus 393 ~IkvWdl~~-~~~c~~tl~~h~~~v---------------~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~-~~~~~~~ 453 (537)
T KOG0274|consen 393 TIKVWDLRT-KRKCIHTLQGHTSLV---------------SSLL--LRDNFLVSSSADGTIKLWDAEEGECL-RTLEGRH 453 (537)
T ss_pred ceEeecCCc-hhhhhhhhcCCcccc---------------cccc--cccceeEeccccccEEEeecccCcee-eeeccCC
Confidence 999999996 6 8999999998764 2333 36789999999999999999999665 77777 6
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
...+..++... .. ++.++.++. ++|+..
T Consensus 454 ~~~v~~l~~~~----~~-----il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 454 VGGVSALALGK----EE-----ILCSSDDGSVKLWDLR 482 (537)
T ss_pred cccEEEeecCc----ce-----EEEEecCCeeEEEecc
Confidence 78888877761 11 788888888 999433
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-26 Score=192.48 Aligned_cols=293 Identities=16% Similarity=0.223 Sum_probs=201.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+++|. +.|++++|+ .||+.|++++.|++|++|++++.....
T Consensus 80 ~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~e----------------------- 122 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKE----------------------- 122 (420)
T ss_pred hhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhh-----------------------
Confidence 5678898 889999998 899999999999999999998744221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCC--
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD-- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~-- 250 (501)
.+|++.. -.-+..+.+.|+||-+-++.+ ...++++|.+....
T Consensus 123 --------------------------------Hr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 123 --------------------------------HRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred --------------------------------hhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 1222221 112245678999998877664 78899999775321
Q ss_pred -eeeeeeecCCCCC-CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 -QCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 -~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.....+......+ ..|...+-.+-....+ .+|++++.|..|.+|+++ ++.. ..++. ...
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~ 229 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQS 229 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccc
Confidence 1111111110111 3455666666666666 999999999999999999 4333 22222 123
Q ss_pred ceeEEEEeeCCCEEEEEcC-CcEEEEEeeCC-------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMD-------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.-...+.||+|++|+++.. -.|++|.+-.. -+.+..+++|...+ +.++|+++.+.++
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAV 294 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeE
Confidence 4567889999999998875 78999987431 12456778898876 7999999999999
Q ss_pred EEeCCCeEEEEecCCCCcc---e-------EEEecccCcccceeeccCCccccCccceeeeecccceeeccc--cCCcc-
Q 010801 401 TGSYSNLLRIFSHGVGSAG---G-------ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS--SGHHE- 467 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~~---~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~--~~~~~- 467 (501)
+.|.||+++|||++-.... . ..+.+..+....+..+| .|.. |+.......+++.. ++...
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~-----lA~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDS-----LAVSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcE-----EEeecCCceEEEEcccCccchh
Confidence 9999999999998642111 1 12223333444777777 5555 55555444455522 22221
Q ss_pred cccccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 468 LSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 468 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
...-|+..|.+++|+|+|+++|++++..+.++
T Consensus 368 ~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 368 LEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred HHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 22357889999999999999999999887775
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=193.61 Aligned_cols=250 Identities=17% Similarity=0.282 Sum_probs=190.6
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
.|.+.+.|. ...|.+.|++++.+ |.|+|+|+.|-+|+|||..+...+
T Consensus 30 ~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql------------------------- 76 (362)
T KOG0294|consen 30 KPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL------------------------- 76 (362)
T ss_pred ceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-------------------------
Confidence 456666655 34689999999986 899999999999999999876553
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.+...
T Consensus 77 --g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-------------------- 122 (362)
T KOG0294|consen 77 --GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-------------------- 122 (362)
T ss_pred --cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee--------------------
Confidence 5677788 999999998433334899999999999999887654433
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
+ .+|.+.|+.++.+|.+++.++- .|+.+++||+-.++.
T Consensus 123 ----------------------------------------l-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 123 ----------------------------------------L-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred ----------------------------------------e-cccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 2 7899999999999999988876 999999999985543
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.. ... + ....+.+.|+|.| .+++.+..+ .|-+|.+.+..+. ..... +..+.
T Consensus 162 a~-v~~-----L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l 212 (362)
T KOG0294|consen 162 AF-VLN-----L---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRIL 212 (362)
T ss_pred ce-eec-----c---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccce
Confidence 32 211 1 1223459999999 877777665 5889988876443 22221 13466
Q ss_pred EEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE--EcCCCcEEEEEeCCCeE
Q 010801 332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLL 408 (501)
Q Consensus 332 ~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~s~~~dg~i 408 (501)
++.|... ..|++| +++.|.+||... ..+...+.+|...+ -++. -.|++.+|+++|.||.|
T Consensus 213 ~~~~l~~-~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RV---------------K~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 213 CATFLDG-SELLVGGDNEWISLKDTDS-DTPLTEFLAHENRV---------------KDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred eeeecCC-ceEEEecCCceEEEeccCC-Cccceeeecchhhe---------------eeeEEEecCCceEEEEeccCceE
Confidence 7777654 455555 569999999985 88999999999876 3444 35678899999999999
Q ss_pred EEEecCCC
Q 010801 409 RIFSHGVG 416 (501)
Q Consensus 409 ~iwd~~~~ 416 (501)
++||++..
T Consensus 276 ~vWd~~~~ 283 (362)
T KOG0294|consen 276 KVWDIDME 283 (362)
T ss_pred EEEEcccc
Confidence 99999865
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.8e-27 Score=206.06 Aligned_cols=265 Identities=15% Similarity=0.243 Sum_probs=196.9
Q ss_pred cccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.|.+.|+.+..-|.. ..||+++..+.|.|||..+.... .....+.++...+.||.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-----------------~~~~~~~~Pdl~L~gH~------ 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-----------------PKASGECRPDLRLKGHE------ 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-----------------ccccccCCCceEEEeec------
Confidence 5689999999999954 67788889999999998865432 00011455667899998
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.=+.++|++ .....|++++.|++|++||+........
T Consensus 178 ------~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~----------------------------------- 215 (422)
T KOG0264|consen 178 ------KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK----------------------------------- 215 (422)
T ss_pred ------cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc-----------------------------------
Confidence 4467799985 4556889999999999999986542100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCC-CeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 264 (501)
...+...+ .+|...|..++|++-. .+|+++ +|+.+.|||+++. .+.. ....
T Consensus 216 ------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~~ 269 (422)
T KOG0264|consen 216 ------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSVK 269 (422)
T ss_pred ------------------cccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------cccc
Confidence 01122223 8999999999999854 455555 9999999999952 1222 2468
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~ 343 (501)
+|.+.|.|++|+|.+..+||+|+.|++|.+||+|+.+.. ...+ .+|...|..+.|+|... .||
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~-------------e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTF-------------EGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceec-------------cCCCcceEEEEeCCCCCceeE
Confidence 899999999999998789999999999999999986532 1333 45789999999999765 555
Q ss_pred EE-cCCcEEEEEeeCCCCc-------------eeEeeccccccccccccCCCCCcceeeEEEEcCCCcE-EEEEeCCCeE
Q 010801 344 SR-DYMNLKLWDIRMDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLL 408 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~i 408 (501)
++ .|+.+.|||+..-+.. +..-.||...+ ..+.|+|+..+ |++.+.|+.+
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence 44 5799999998643222 23334455443 68999998765 6688999999
Q ss_pred EEEecCC
Q 010801 409 RIFSHGV 415 (501)
Q Consensus 409 ~iwd~~~ 415 (501)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999874
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-27 Score=216.32 Aligned_cols=279 Identities=20% Similarity=0.319 Sum_probs=218.5
Q ss_pred cccccceE---EEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~---~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+|...|. ++..+. .++||+||++||.|++|+...... .++..+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs--- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS--- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH---
Confidence 36777777 566654 677899999999999999874432 22333667888898
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|+++..+ .+++-|+++|.|-+|++|+...+.
T Consensus 74 ---------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~------------------------------------ 106 (735)
T KOG0308|consen 74 ---------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDN------------------------------------ 106 (735)
T ss_pred ---------hHHhhHHhh--cCCCceEEecCCceEEEeecccCc------------------------------------
Confidence 889999987 788899999999999999987653
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEe-cCCCCEEEEE-cCCeEEEEECCCCCe-eeeeeec-CC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM-KP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~-~~ 260 (501)
..|++++ ..|.+-|.|+++ .++..++|+| -|+.|.+||++++.. .+...+. ..
T Consensus 107 ----------------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 107 ----------------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ----------------------chhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 1133333 689999999999 7888888898 999999999995422 2211111 11
Q ss_pred CCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..+. ++...|++++.++.| .+|++|+.++.+++||.++.+ ++++. .||...|..+..++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence 2344 888999999999999 999999999999999999976 44443 5789999999999999
Q ss_pred CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 340 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..++++ +||+|++||+.. .+++.++..|...+ +++..+|+-..+.+|+.||.|..=|+.+...
T Consensus 226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 999987 579999999985 89999999998875 8999999999999999999999999988533
Q ss_pred ceEEEecccCcccceeec
Q 010801 419 GGITVEAGKNENRKPILQ 436 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~ 436 (501)
. ..+.....++..+...
T Consensus 290 ~-tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 290 S-TLICKEDAPVLKLHLH 306 (735)
T ss_pred h-eEeecCCCchhhhhhc
Confidence 3 3344444444444443
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3.1e-25 Score=197.25 Aligned_cols=353 Identities=13% Similarity=0.155 Sum_probs=237.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.||+|.++|+ ++||..+|.|.||+..+.+ ..+...+|.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~---------- 287 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD---------- 287 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC----------
Confidence 46799999999998 6799999999999975433 334445898
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|.+++.. .+| .|++|+.|+.|..||-.-. +..+...++. .+.+..+...... +..|..
T Consensus 288 --ggv~~L~~l--r~G-tllSGgKDRki~~Wd~~y~---k~r~~elPe~---------~G~iRtv~e~~~d--i~vGTt- 347 (626)
T KOG2106|consen 288 --GGVFSLCML--RDG-TLLSGGKDRKIILWDDNYR---KLRETELPEQ---------FGPIRTVAEGKGD--ILVGTT- 347 (626)
T ss_pred --CceEEEEEe--cCc-cEeecCccceEEecccccc---ccccccCchh---------cCCeeEEecCCCc--EEEeec-
Confidence 999999986 555 5566999999999992211 1111111110 0111111111111 111110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+.|-.=.++.. .... ..+|....+.++.+|+..+++++ .|+.+++|+ . .+..... ....++
T Consensus 348 -rN~iL~Gt~~~~----f~~~-v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~ 410 (626)
T KOG2106|consen 348 -RNFILQGTLENG----FTLT-VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPA 410 (626)
T ss_pred -cceEEEeeecCC----ceEE-EEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCce
Confidence 111111111111 1111 16899999999999999999998 999999999 3 3333322 134678
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.++.|+|.| .++.|+..|...+.|..+..+. .+-.. ..+++.+.|+|+|.+||.|+ |+.
T Consensus 411 ~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 411 ECADFHPSG--VVAVGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred eEeeccCcc--eEEEeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCe
Confidence 999999997 8999999999999999886443 22221 36899999999999999997 599
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc--eE------
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GI------ 421 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~------ 421 (501)
|+||.+..++.......-+.. . .++.+.||+|+++|.+.+.|-.|..|....-+.. .+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWAT 536 (626)
T ss_pred EEEEEECCCCcEEEEeeeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeee
Confidence 999999875655544433332 1 1279999999999999999999999943321111 00
Q ss_pred --------EE-ecccCcccceeeccCCccccCccceeeeecccce-eecccc-----CCcccccccCCCeEEEEEccCCC
Q 010801 422 --------TV-EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-----GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 422 --------~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-----~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
.+ -.+...+..++.+. ..++ +|+|...|+ ++++-. -...++.+|++.|++++|..+..
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~ 609 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS 609 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc
Confidence 00 12334455555555 5666 899999999 999332 34456678999999999988776
Q ss_pred EEEE-eeCCeEEEEe
Q 010801 487 LIAC-ANGNSLFFHY 500 (501)
Q Consensus 487 ~la~-~~~~~~~i~~ 500 (501)
.|.+ +.+..+..|.
T Consensus 610 ~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWR 624 (626)
T ss_pred eEEecCCCceEEEEE
Confidence 6554 4477799885
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.1e-27 Score=188.98 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=198.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-+|.+.|..+...-.|+.|||++.|++|+||....+.. ...+.+|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~------- 56 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS------- 56 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC-------
Confidence 36899999999999999999999999999999886532 24778999999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|+.++|..-.-|.+|++++.||.|.||+-++++..+..++
T Consensus 57 -----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~--------------------------------- 98 (299)
T KOG1332|consen 57 -----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH--------------------------------- 98 (299)
T ss_pred -----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh---------------------------------
Confidence 999999998334689999999999999999988864443221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 264 (501)
..|...|++++|.|. |-.|+++ .||.|.+.+.+..+. .... ...
T Consensus 99 --------------------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k------i~~ 146 (299)
T KOG1332|consen 99 --------------------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK------IVF 146 (299)
T ss_pred --------------------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh------hhh
Confidence 589999999999885 5677788 999999999885522 2211 257
Q ss_pred CcccceEEEEEecC---C----------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 265 DLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 265 ~~~~~v~~v~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.|.-.|++++|.|. | .+.|++|+.|..|+||+..+++-. ..+ ++.+|...|.
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~e~-------------~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--LER-------------TLEGHKDWVR 211 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--hhh-------------hhhhcchhhh
Confidence 79999999999986 2 145999999999999999876311 112 2456889999
Q ss_pred EEEEeeCC----CEEEEEc-CCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 332 DIKFANDG----QHLLSRD-YMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 332 ~~~~sp~~----~~l~~~~-~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.++|.|.- .+||+++ ||++.||-.+.+..+-. .+......+ ..++||+.|++|+.++.
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~---------------w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV---------------WRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce---------------EEEEEeccccEEEEecC
Confidence 99999963 4788886 59999998764322211 122222222 79999999999999999
Q ss_pred CCeEEEEecC
Q 010801 405 SNLLRIFSHG 414 (501)
Q Consensus 405 dg~i~iwd~~ 414 (501)
|+.|.+|.-.
T Consensus 277 dNkvtlwke~ 286 (299)
T KOG1332|consen 277 DNKVTLWKEN 286 (299)
T ss_pred CcEEEEEEeC
Confidence 9999999754
No 95
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=8.3e-26 Score=208.27 Aligned_cols=406 Identities=14% Similarity=0.139 Sum_probs=257.4
Q ss_pred cccccceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
-+|..+|+|+.|-|+.+ ++++|+.|++|++|.++.. ....+..+++|.
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~-------------------------~~~~i~~~~g~~---- 101 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE-------------------------YLIKIYTIQGHC---- 101 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh-------------------------heEEEEeecCcc----
Confidence 36999999999999887 8999999999999999843 234667788888
Q ss_pred hccccccccceeEEEEeecCCCCEEEE-eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC-CCc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA 183 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s-~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 183 (501)
+.++++. +.....+ .+.|+++.+||.+..+........... ..--++..+..+ ...
T Consensus 102 ----------~~~~cv~---a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~---------k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 102 ----------KECVCVV---ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEI---------KEAIPLCLAALKNNKT 159 (764)
T ss_pred ----------eeEEEEE---eeeeEEEeeccCceEEEeecCCCceeeehheehhh---------hhHhhHHHhhhccCCc
Confidence 4455553 2222333 368999999999665522221111100 000011111111 111
Q ss_pred -ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC---EEEEE-cCCeEEEEECCCCC--------
Q 010801 184 -HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD-------- 250 (501)
Q Consensus 184 -~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~-~d~~i~iwd~~~~~-------- 250 (501)
.++.|. .+..+.++.-.. ...+....+ .+|.+.|.+++|...+. +++++ .|..|+||.+...+
T Consensus 160 ~lla~Gg--s~~~v~~~s~~~-d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 160 FLLACGG--SKFVVDLYSSSA-DSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred EEEEecC--cceEEEEeccCC-cceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 112221 133444444442 122333334 89999999999976443 56677 99999999876433
Q ss_pred ------------eeeeee--ecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc-----------ccc
Q 010801 251 ------------QCFNIV--DMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-----------LCD 304 (501)
Q Consensus 251 ------------~~~~~~--~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~-----------~~~ 304 (501)
.....+ .+.. .-+.+|...|.++.|+|.+ ..|++++.|.++.+|...+.. ...
T Consensus 236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 011011 0111 1235999999999999998 899999999999999765531 100
Q ss_pred c-----------------------ccceeec-ccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEee---
Q 010801 305 H-----------------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR--- 356 (501)
Q Consensus 305 ~-----------------------~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~--- 356 (501)
. ..+.+.. .+........+.||...|.+++|+|.|+||++.+ |.+-|||-.-
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 0 0011110 0111122234679999999999999999998764 6777766321
Q ss_pred -------C------------------------CCCceeEeeccccc-----------------------cc---------
Q 010801 357 -------M------------------------DSTPVATFKIHEHL-----------------------RP--------- 373 (501)
Q Consensus 357 -------~------------------------~~~~~~~~~~~~~~-----------------------~~--------- 373 (501)
. +.+.++.|...... ++
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0 00011111100000 00
Q ss_pred ---------------------cccc---------------------cCCCCCcceeeEEEEcCCCcEEEEEeCC-----C
Q 010801 374 ---------------------KLCD---------------------LYNNDSIFDKFECSVSGDGLHFATGSYS-----N 406 (501)
Q Consensus 374 ---------------------~~~~---------------------~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g 406 (501)
..+. +|.. -+.+++++.+|+++++|+++.. -
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH--GyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH--GYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC--ceeEEEEEecCCCCEEeehhhhCCccce
Confidence 0000 1111 1146899999999999998764 3
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc------ccccccCCCeEEE
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH------ELSYNLSSKLLHL 479 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~------~~~~~~~~~i~~~ 479 (501)
.|++|+..+-.. .+.++.|.-.|+.++|+| ++++ |.+.++|+. .+|...+.. .....|+.-|.+.
T Consensus 553 vI~lw~t~~W~~-~~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 553 VIRLWNTANWLQ-VQELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred EEEEEeccchhh-hheecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 589999887633 368999999999999999 8999 999999999 999443322 2355789999999
Q ss_pred EEccCCCEEEEeeC-CeEEEEe
Q 010801 480 AWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~-~~~~i~~ 500 (501)
+|+|++.++|+++. ..+.||.
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccCcccceeEEecCCceEEEEe
Confidence 99999999999995 4588885
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=210.57 Aligned_cols=375 Identities=13% Similarity=0.123 Sum_probs=274.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.+.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+ .+|+.-.
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------------~sFk~d~-------- 244 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------------MSFKQDW-------- 244 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE---------------------------EEEEccc--------
Confidence 45789999999999999999999999999999988653 5565444
Q ss_pred cccccceeEEEEeecCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|+.++|. .||..+ ++|+..|.+-+||++..+.+...... +.+.+....+-+....+.+.
T Consensus 245 ----g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~na------------h~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 245 ----GRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA------------HYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred ----cceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeecc------------ccCCcccceecCCCceEeec
Confidence 889999996 677655 45567799999999988776654321 12233333333333333333
Q ss_pred eeccCcceEEEeccCcee-eeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCC----------------
Q 010801 189 EWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEIS---------------- 249 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~-~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~---------------- 249 (501)
. .|..+++|-.+...- .+.++.. .+|..+..++.|. .+|..+.++ .|++.+.+++...
T Consensus 307 ~--~DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 307 G--ADNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred c--CCCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 3 256666666653321 2334433 7888888888886 567777776 7777666654320
Q ss_pred -------------------------------------CeeeeeeecC----------CCCCCCcccceEEEEEecCCCcE
Q 010801 250 -------------------------------------DQCFNIVDMK----------PSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 250 -------------------------------------~~~~~~~~~~----------~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.....+++.+ +..+..-...+++++.++.| ++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence 0001111111 12222234678999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
.+.|+..|.|-+|++++|-.. ..+.. -+.|..+|++++...-++.+++++ +|.+.+||... ..+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l 527 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVL 527 (910)
T ss_pred EEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cce
Confidence 999999999999999988543 22321 135789999999998888888875 69999999975 666
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
+..+...... ..+..+.....++.+..|-.|+++|+.+. .+...+.+|.+.++.++|+| +|
T Consensus 528 ~~~l~l~~~~----------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--Dg 588 (910)
T KOG1539|consen 528 KKSLRLGSSI----------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DG 588 (910)
T ss_pred eeeeccCCCc----------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CC
Confidence 6666543332 46777878889999999999999999887 56699999999999999999 89
Q ss_pred ccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEee--CCeEEEEe
Q 010801 442 RRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 442 ~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 500 (501)
+. |++.+.|+. ++|+.. ....+......+++.+.|||.|.+||++. .+++|+|.
T Consensus 589 rW-----lisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 589 RW-----LISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cE-----EEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99 999999999 999544 34555667788999999999999999998 46899995
No 97
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.2e-25 Score=202.20 Aligned_cols=325 Identities=14% Similarity=0.162 Sum_probs=243.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.+|||+.+.+.||.+-.||.|-||++..+ +-....+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~---------- 68 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPE---------- 68 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCC----------
Confidence 578999999999999999999999999998853 44556777776
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+..|.+++|+ ++.+|.+.+.+|.|.-||+.+++.+...
T Consensus 69 -drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~-------------------------------------- 106 (691)
T KOG2048|consen 69 -DRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNI-------------------------------------- 106 (691)
T ss_pred -CCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEe--------------------------------------
Confidence 3889999996 6778899999999999999998755433
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
....+.|++++.+|.+..++.| +||.+..++...+.-.... .+....+.|
T Consensus 107 -----------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRv 157 (691)
T KOG2048|consen 107 -----------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRV 157 (691)
T ss_pred -----------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceE
Confidence 4667899999999999999999 9998888888744333332 255567899
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~ 348 (501)
.+++|+|++ ..++.|+.||.|++||...+....... ++... . ++-..-|+++.|-.++ .|++|+. |
T Consensus 158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G 225 (691)
T KOG2048|consen 158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAG 225 (691)
T ss_pred EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCc
Confidence 999999999 889999999999999999876432000 01111 0 0013468888888666 5777754 9
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~ 425 (501)
+|.+||... +.+++.+..|...+ .+++..+++.++++++.|+.|..|...+.... ......
T Consensus 226 ~V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 226 TVTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred eEEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 999999986 99999999888865 79999999999999999999999998876442 233446
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-e------------------------------------------eccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H------------------------------------------ENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------------------------------------------iw~~ 462 (501)
|...+++++..+. . +.+|+.|.. . +|..
T Consensus 290 h~hdvrs~av~~~----~-----l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN----A-----LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred Ccccceeeeeecc----e-----EEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceec
Confidence 7777777777653 1 555554433 2 2211
Q ss_pred cCCcc-----------cccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 463 SGHHE-----------LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 463 ~~~~~-----------~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.... ....-...|.+-+.||+|++||.++-..++||.
T Consensus 361 GS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 361 GSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred cCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 11100 011223478899999999999999966666653
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=187.80 Aligned_cols=275 Identities=14% Similarity=0.183 Sum_probs=211.6
Q ss_pred EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecC
Q 010801 46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125 (501)
Q Consensus 46 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~ 125 (501)
.|++|++...|.=+++.-.... + .....|...+.-.+++|. ++|++++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~--------------~-~~s~~~~l~~lF~~~aH~------------~sitavAVs--- 52 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKG--------------C-TDSVKPTLKPLFAFSAHA------------GSITALAVS--- 52 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccc--------------c-ccccceeeeccccccccc------------cceeEEEec---
Confidence 4677888777766665532100 0 122234555566788898 999999984
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
+.++++|+.|.+|+|||+.........
T Consensus 53 -~~~~aSGssDetI~IYDm~k~~qlg~l---------------------------------------------------- 79 (362)
T KOG0294|consen 53 -GPYVASGSSDETIHIYDMRKRKQLGIL---------------------------------------------------- 79 (362)
T ss_pred -ceeEeccCCCCcEEEEeccchhhhcce----------------------------------------------------
Confidence 789999999999999999876533322
Q ss_pred eeeeeEeecCCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 206 HARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
..|.+.|+++.|.+.-. .|++| +||.|.+|+.. .-.++.. +.+|.+.|+.++.+|.+ ++
T Consensus 80 ---------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KL 141 (362)
T KOG0294|consen 80 ---------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KL 141 (362)
T ss_pred ---------eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ce
Confidence 57899999999988764 78888 99999999998 4455553 78999999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCce
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~ 362 (501)
-++.+.|+.+++||+-.++.. .+... ....+.+.|+|.|.+++....+.|-+|.+.. .+..
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~ 202 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVF 202 (362)
T ss_pred EEEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHh
Confidence 999999999999999888643 22222 2234559999999988887778999999975 5554
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccc
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 442 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 442 (501)
.++...... .++.|- ++..|++|+.|+.|++||.+.. .....+.+|...|..+.+...+.+.
T Consensus 203 ~~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 203 REIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred hhhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCce
Confidence 444433211 345554 6678999999999999999886 4558999999999999987766777
Q ss_pred cCccceeeeecccce-eecccc
Q 010801 443 RSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 443 ~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+ |++.+.||. ++|+.+
T Consensus 265 ~-----lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 265 Y-----LVTASSDGFIKVWDID 281 (362)
T ss_pred E-----EEEeccCceEEEEEcc
Confidence 7 999999999 999555
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=206.38 Aligned_cols=362 Identities=15% Similarity=0.162 Sum_probs=239.1
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
..++.|++....|.+...|..++|||+..-... .+. ..+--|. .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------gk~-~s~lyHS------------~ 370 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------GKC-SSMLYHS------------A 370 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------cce-eeeeecc------------c
Confidence 457889999999999999999999999865431 112 1233455 5
Q ss_pred ceeEEEEee----cC-----CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC-CCCCcc
Q 010801 115 KINRVRWCA----AP-----NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAH 184 (501)
Q Consensus 115 ~V~~v~~~~----~~-----~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (501)
.|+.|.-.| ++ ....|++++.|++||+|++..+....+..-+.. ........+ .....+
T Consensus 371 ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----------s~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 371 CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----------SANLSKIPYEDSTQQI 439 (1080)
T ss_pred eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----------hhhhhcCccccCchhh
Confidence 566665543 01 123589999999999999986432222111100 000000001 111111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+.+.. .-++|... ... ......+.+++.+|+|++|++| ..|.+++|++..-.... .+
T Consensus 440 ~~d~~------~~~fdka~-------~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~--------~~ 497 (1080)
T KOG1408|consen 440 MHDAS------AGIFDKAL-------VST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC--------FM 497 (1080)
T ss_pred hhhcc------CCcccccc-------hhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------he
Confidence 11110 01111111 000 3445689999999999999999 99999999998433322 27
Q ss_pred CCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--
Q 010801 264 DDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-- 339 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-- 339 (501)
+.|...|.|+.|+.- +.++|++++.|+.|++||....-... +. +.+|...|+++.|.-+|
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~---qt-------------ld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV---QT-------------LDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh---hh-------------hcccccceeEEEEeecCCc
Confidence 899999999999842 22689999999999999987542221 33 34578999999999877
Q ss_pred CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 340 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..++++ .|..|. |+.......-..+.-|..... -..+++++..|..+++++++.|..|+||++++++.
T Consensus 562 ~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~----------ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 562 RKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLS----------KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEeccCchhhh-eehhccccCceeccccccccc----------cceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 455554 455544 443211111222222222221 11126899999999999999999999999999955
Q ss_pred ceEEEecccC---cccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 419 GGITVEAGKN---ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 419 ~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
. +.|++..+ ....+..-| .|-+ +++.-.|+. .++ ..++.+..+.+|+.-|+.+.|.+|-+.|.+++
T Consensus 631 ~-k~FKgs~~~eG~lIKv~lDP--SgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 631 V-KSFKGSRDHEGDLIKVILDP--SGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred e-eeecccccCCCceEEEEECC--CccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 4 77776544 344455555 6666 888888888 777 77789999999999999999999999988887
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|+ ||||.
T Consensus 703 gDgCIFvW~ 711 (1080)
T KOG1408|consen 703 GDGCIFVWK 711 (1080)
T ss_pred CCceEEEEE
Confidence 555 99996
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=188.51 Aligned_cols=281 Identities=14% Similarity=0.187 Sum_probs=219.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
.+-.||+ .+|-.++|+| .|+|-+|++++.|+.-.+-+-++|..+-.+
T Consensus 8 l~c~ght------------rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-------------------- 55 (334)
T KOG0278|consen 8 LTCHGHT------------RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-------------------- 55 (334)
T ss_pred eEEcCCC------------cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--------------------
Confidence 3457888 8999999997 567888889999988777666666544432
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|.+.|++.+.+.+....+++ .|-+-++||.-++...
T Consensus 56 -----------------------------------------eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 56 -----------------------------------------EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred -----------------------------------------eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 7999999999999988888888 9999999998855543
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
. ...|..-|.+++|+.|. +.|++|+.+..+|+||+...+-.. + .+.+|++.|..
T Consensus 95 h---------sf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App---~-------------E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 95 H---------SFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPP---K-------------EISGHTGGIRT 148 (334)
T ss_pred h---------hhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCc---h-------------hhcCCCCccee
Confidence 3 23477889999999998 999999999999999997653211 1 13568899999
Q ss_pred EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
+.|....+.|++.. |++||+||.++ ++.++++...... +++..+++|++|.++ ..+.|.+|
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~V----------------tSlEvs~dG~ilTia-~gssV~Fw 210 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSPV----------------TSLEVSQDGRILTIA-YGSSVKFW 210 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCCC----------------cceeeccCCCEEEEe-cCceeEEe
Confidence 99999888888765 59999999998 8888888755443 689999999876554 55789999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCccc-ccccCCCeEEEEEccCCCE
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL-SYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~-~~~~~~~i~~~~~sp~~~~ 487 (501)
|..+...+ +.++.. -.|.+....|. ..+ ++.|+.|.. ..+ .+++.+.. ..+|-++|.++.|+|||..
T Consensus 211 daksf~~l-Ks~k~P-~nV~SASL~P~--k~~-----fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 211 DAKSFGLL-KSYKMP-CNVESASLHPK--KEF-----FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ccccccce-eeccCc-cccccccccCC--Cce-----EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence 99876333 333322 24556666664 344 788988888 665 66666666 4789999999999999999
Q ss_pred EEEeeCCe-EEEEeC
Q 010801 488 IACANGNS-LFFHYA 501 (501)
Q Consensus 488 la~~~~~~-~~i~~~ 501 (501)
-|+|+.|+ +++|+.
T Consensus 282 yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQT 296 (334)
T ss_pred eeccCCCceEEEEEe
Confidence 99999665 999973
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=187.89 Aligned_cols=268 Identities=12% Similarity=0.133 Sum_probs=201.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|.+|+||| ....+++.+|.|++||+|+++.. .....
T Consensus 28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~k---------------------------------------- 66 (347)
T KOG0647|consen 28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPK---------------------------------------- 66 (347)
T ss_pred cchheeEecc-ccCceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence 8899999996 35567778899999999999863 32110
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
-...|.++|.+++|+.||..+++| .|+.+++||+.+ ++..+ +..|.++|.
T Consensus 67 --------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~Q~~~--------v~~Hd~pvk 117 (347)
T KOG0647|consen 67 --------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-GQVSQ--------VAAHDAPVK 117 (347)
T ss_pred --------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-CCeee--------eeeccccee
Confidence 015889999999999999999999 999999999994 45443 678999999
Q ss_pred EEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 272 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 272 ~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
.+.|-+.. ...|++|+.|.+|+.||.|..... ..+.. ...+.++..- ...++.+ .++.
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--CceeEEEecCCc
Confidence 99998765 138999999999999999987544 33333 2455555443 2345555 4599
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC-cceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 428 (501)
|.+|+++.+......+...-. +.+.+++..+|....+.|+-+|.+.|..++.+. ....+++.|+.
T Consensus 178 i~vynL~n~~te~k~~~SpLk--------------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLK--------------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EEEEEcCCCcchhhhhcCccc--------------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 999999753332222222211 122688888888878999999999999998742 33477888874
Q ss_pred ---------cccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 429 ---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ---------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.|..++|.|. -| . |++.+.||. ..|+-+ ..+.....+.++|++.+|+.+|.++|.+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~-hg-t-----lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPV-HG-T-----LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecc-cc-e-----EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5778899984 22 2 899999999 999444 44556678899999999999999999875
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-25 Score=176.22 Aligned_cols=253 Identities=16% Similarity=0.261 Sum_probs=188.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-|.+.|+|.+|||+|++||+|+.|.+|++..+....+. -.-...+|.-|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~----------------------~~g~dle~nmhd-------- 136 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN----------------------ATGHDLEFNMHD-------- 136 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc----------------------ccCcceeeeecC--------
Confidence 47899999999999999999999999999877654432 000112344455
Q ss_pred cccccceeEEEEeec--CCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 110 LEIEEKINRVRWCAA--PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~--~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|..++|... ..+..|++++ .|..|++-|-..++-.
T Consensus 137 ----gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~------------------------------------ 176 (350)
T KOG0641|consen 137 ----GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF------------------------------------ 176 (350)
T ss_pred ----CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc------------------------------------
Confidence 99999999843 3456677765 6777777776665522
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|.+.|.++ ++=+|-++++| .|.+|++||++ -..++.+++.....-.-
T Consensus 177 ------------------------~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 177 ------------------------HAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL 229 (350)
T ss_pred ------------------------eee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence 222 6888888876 34467899999 99999999999 55566654322111111
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....|.+++..|.| ++|++|-.|....+||++.++.+ +.+-. |...|.++.|+|...|++++
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~p-------------hsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHP-------------HSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCC-------------CccceeEEEeCCCceEEEEe
Confidence 23679999999999 99999999999999999998765 33333 67899999999999999999
Q ss_pred c-CCcEEEEEeeCCCCc-----eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 D-YMNLKLWDIRMDSTP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+ |..|++-|++ +.+ +.....|.... ..+.|+|+.--+++.+.|.++.+|-+.
T Consensus 292 syd~~ikltdlq--gdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecc--cchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 7 4999999986 332 23334455443 579999998889999999999999764
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.7e-27 Score=197.64 Aligned_cols=243 Identities=16% Similarity=0.257 Sum_probs=205.3
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~ 109 (501)
+.++|.|+.||.|...||+|+.||.|+||.+.+|.++ +.|. +|+
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl---------------------------RrFdrAHt-------- 306 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL---------------------------RRFDRAHT-------- 306 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHH---------------------------HHhhhhhc--------
Confidence 7899999999999999999999999999999999874 4454 788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|+++.|+ .|+..+++++.|.++++--+.+|++.+.+
T Consensus 307 ----kGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKEf------------------------------------ 344 (508)
T KOG0275|consen 307 ----KGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKEF------------------------------------ 344 (508)
T ss_pred ----cCeeEEEEc--cCcchhhcccccceEEEeccccchhHHHh------------------------------------
Confidence 889999998 78999999999999999999988755433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|.+.|+...|.++|..++++ .||+|++|+.. ...++.++ ...+...
T Consensus 345 -------------------------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tf-----k~~~~d~ 393 (508)
T KOG0275|consen 345 -------------------------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTF-----KPLGTDY 393 (508)
T ss_pred -------------------------cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhc-----cCCCCcc
Confidence 7999999999999999999999 99999999999 55666653 1334567
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~ 347 (501)
+|.++..-|.++..++++...++|.+.++...- . +.|.. +.+ ..+...+++.+|.|.++.+. .|
T Consensus 394 ~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-V----rsfsS-----GkR-----EgGdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-V----RSFSS-----GKR-----EGGDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred cceeEEEcCCCCceEEEEcCCCeEEEEeccceE-E----eeecc-----CCc-----cCCceEEEEecCCCcEEEEEccC
Confidence 889999989888899999999999999987542 2 33332 111 13567888899999999875 57
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+.++.|.+.+ ++...++..|+..+ ..++-+|..+.||+-++||.+++|.
T Consensus 459 ~vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 459 GVLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence 9999999986 99999999998765 6899999999999999999999995
No 104
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.9e-25 Score=210.69 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=174.5
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
+.+++|+.... .++..+ .+|...|.+++|+|+ +.+|++| .|++|++||+.........+......+.+|...|.
T Consensus 54 gvI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 54 GAIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred eEEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45666765542 244444 799999999999997 7899998 99999999998433211100000012578999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++|+|++..+|++++.|+.|++||+++++.. ..+. |...|.+++|+|+|.+|++++ |+.|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~--------------~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQIN--------------MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEe--------------cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 99999998445689999999999999987532 1121 235799999999999999875 6999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC----eEEEEecCCCCcceEEEecc
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~ 426 (501)
+|||+++ ++.+.++.+|...+... . +....|++++.+|++++.|+ .|+|||+.+.......+..
T Consensus 192 rIwD~Rs-g~~i~tl~gH~g~~~s~-------~---v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l- 259 (568)
T PTZ00420 192 HIIDPRK-QEIASSFHIHDGGKNTK-------N---IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI- 259 (568)
T ss_pred EEEECCC-CcEEEEEecccCCceeE-------E---EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-
Confidence 9999996 88888898888653210 0 02335678999999988764 7999999864343333322
Q ss_pred cCcccceeecc-CCccccCccceeeeecccce-eeccccC-Cccc--ccccCCCeEEEEEccCCC
Q 010801 427 KNENRKPILQA-APRARRSSLSNLTRGLYRQA-HENSSSG-HHEL--SYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 427 ~~~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~--~~~~~~~i~~~~~sp~~~ 486 (501)
......+.... ..++.+ +++|+.|+. ++|.... .... ...+..++..++|.|+..
T Consensus 260 d~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLI-----YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCccceEEeeeCCCCCE-----EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 22222221111 125666 889999999 9995432 1111 223567788899999754
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.7e-26 Score=219.74 Aligned_cols=270 Identities=15% Similarity=0.239 Sum_probs=197.8
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|+|+.|+|||++||+|+.|+.|.||+....... ..... . ........++....+.+|.
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~---~~fgs-----~-g~~~~vE~wk~~~~l~~H~------ 129 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSG---TVFGS-----T-GGAKNVESWKVVSILRGHD------ 129 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCc---ccccc-----c-ccccccceeeEEEEEecCC------
Confidence 3469999999999999999999999999999998731000 00000 0 0122334688889999999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|+ |++.+|++++.|++|.+|+..+.+..+..
T Consensus 130 ------~DV~Dv~Ws--p~~~~lvS~s~DnsViiwn~~tF~~~~vl---------------------------------- 167 (942)
T KOG0973|consen 130 ------SDVLDVNWS--PDDSLLVSVSLDNSVIIWNAKTFELLKVL---------------------------------- 167 (942)
T ss_pred ------CccceeccC--CCccEEEEecccceEEEEccccceeeeee----------------------------------
Confidence 889999998 79999999999999999999987655443
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|..+.|.|-|++|++= +|++|++|++.. -.+.+.+.-. ..-...
T Consensus 168 ---------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~p-f~~~~~ 218 (942)
T KOG0973|consen 168 ---------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKP-FEESPL 218 (942)
T ss_pred ---------------------------ecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccc-hhhCCC
Confidence 7999999999999999999997 999999999773 3344433211 111123
Q ss_pred ccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC----
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---- 338 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---- 338 (501)
....+.+.|+||| .+|++... -.++.|.+-.+- .....+-||..++..+.|+|.
T Consensus 219 ~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tW-----------------k~~~~LvGH~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 219 TTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTW-----------------KVDKDLVGHSAPVEVVRFNPKLFER 280 (942)
T ss_pred cceeeecccCCCc-CeecchhhccCCcceeEEEecCCc-----------------eeeeeeecCCCceEEEEeChHHhcc
Confidence 4567899999999 99998644 223444443222 112245678999999999982
Q ss_pred -CC------------EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 339 -GQ------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 339 -~~------------~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+ .+|+|+ |++|-||.... .+++.....-... . |.+++|+|||..|+.+|.
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSL 345 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEec
Confidence 11 345665 69999999865 5665544322111 1 169999999999999999
Q ss_pred CCeEEEEecCCC
Q 010801 405 SNLLRIFSHGVG 416 (501)
Q Consensus 405 dg~i~iwd~~~~ 416 (501)
||+|.+..++..
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998763
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=204.59 Aligned_cols=263 Identities=16% Similarity=0.169 Sum_probs=189.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|++++|++.|..|++.+.....+|+|..+.+... -..|.+. .+-+..-+||.
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e-------~~KGDQY--------I~Dm~nTKGHi---------- 268 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE-------FSKGDQY--------IRDMYNTKGHI---------- 268 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeee-------eeccchh--------hhhhhccCCce----------
Confidence 5689999999999988888878899999987654320 0000000 00113356888
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.++|.+|+| .+...|++++.||++|+|++...+.. .+++..
T Consensus 269 --a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k---------------------------------- 311 (641)
T KOG0772|consen 269 --AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK---------------------------------- 311 (641)
T ss_pred --eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec----------------------------------
Confidence 8899999996 35678999999999999999875421 111100
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc-
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE- 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 268 (501)
...+..-.+++++|+++|+.||+| .||.|.+|+...... ...+. .-.+|..
T Consensus 312 ----------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~----vk~AH~~g 364 (641)
T KOG0772|consen 312 ----------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMK----VKDAHLPG 364 (641)
T ss_pred ----------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-ccceE----eeeccCCC
Confidence 003445678899999999999999 999999999762221 11110 1356766
Q ss_pred -ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 269 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 -~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.|++|+|+++| ++|++-+.|+++++||+++.+... .++.+- + ..-+-+.++|||+.++|++|+
T Consensus 365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL---~--------t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGL---P--------TPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCC---C--------ccCCCCccccCCCceEEEeccc
Confidence 89999999999 999999999999999999876443 222220 0 023568899999999999874
Q ss_pred ----C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. +.+.+||..+ -..++.+......+ ..+.|+|.=+.|+.|+.||.+++|=-.
T Consensus 430 ~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEECc
Confidence 1 7899999876 66666665554433 689999998899999999999987433
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=199.43 Aligned_cols=241 Identities=19% Similarity=0.279 Sum_probs=194.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+++.|-.||++||.|+..|.|+|||..+.. .+..+++|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~---------- 110 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ---------- 110 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc----------
Confidence 5779999999999999999999999999955321 236688999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.+|..+.|+| .++..|++|+.|+.+++||+.+......
T Consensus 111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~--------------------------------------- 148 (487)
T KOG0310|consen 111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE--------------------------------------- 148 (487)
T ss_pred --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence 9999999996 5778899999999999999988763211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
+.+|++.|.|.+|+|-.. ++++| .||.|++||.+.....+. .-.|..+
T Consensus 149 ----------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~--------elnhg~p 198 (487)
T KOG0310|consen 149 ----------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV--------ELNHGCP 198 (487)
T ss_pred ----------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--------EecCCCc
Confidence 279999999999998654 67788 999999999996543332 2358899
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|..+.+-|.| .++++++. ..|++||+.++.... ..+. .|...|+++.+..++..|++++ |+
T Consensus 199 Ve~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll---~~~~-------------~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLL---TSMF-------------NHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceeh---hhhh-------------cccceEEEEEeecCCceEeeccccc
Confidence 9999999998 88888775 579999999764321 1111 2567899999999999999886 79
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.+++||+.+ -+.+..+...... .+++.+|+++.++.|..||.+.+=+...+
T Consensus 261 ~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 261 HVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999764 7888888755443 69999999999999999999887755444
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=213.97 Aligned_cols=252 Identities=16% Similarity=0.235 Sum_probs=202.8
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
-|+..+.+. ......+|.+.|.+++|..-+.+|++|+.|.+++|||..+|++
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-------------------------- 283 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-------------------------- 283 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--------------------------
Confidence 355544333 2233568999999999988789999999999999999998875
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
...+.+|. ..|.++... ...+++|+.|.+|++|++.++.+..+.
T Consensus 284 -~~~l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~------------------- 327 (537)
T KOG0274|consen 284 -THSLQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLL------------------- 327 (537)
T ss_pred -EEEecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEe-------------------
Confidence 48899999 889999863 457888899999999999988766554
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
.+|...|+++..+ +.++++| .|++|++||+. ..+
T Consensus 328 ------------------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~ 362 (537)
T KOG0274|consen 328 ------------------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK 362 (537)
T ss_pred ------------------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce
Confidence 5699999999987 7799998 99999999999 667
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeecccce
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+++. +.+|...|.++.+.+. +.+++|+.|++|++||+++. +.. ..+.. |..-+
T Consensus 363 cl~s-------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~-------------h~~~v 416 (537)
T KOG0274|consen 363 CLKS-------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTLQG-------------HTSLV 416 (537)
T ss_pred eeee-------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhhcC-------------Ccccc
Confidence 7764 8899999999988874 67999999999999999987 332 44444 55566
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
..+.+ .+++|++++ |++|++||... +++++.+.++ ...+ +.+++. ...+++++.||++
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV 476 (537)
T ss_pred ccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence 55544 478888885 69999999986 8999999884 3332 455554 4678899999999
Q ss_pred EEEecCCCCcc
Q 010801 409 RIFSHGVGSAG 419 (501)
Q Consensus 409 ~iwd~~~~~~~ 419 (501)
++||+.++...
T Consensus 477 ~l~dl~~~~~~ 487 (537)
T KOG0274|consen 477 KLWDLRSGTLI 487 (537)
T ss_pred EEEecccCchh
Confidence 99999998554
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.3e-26 Score=184.49 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=191.4
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec--CCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~ 291 (501)
..|...|..+...--|+.|+++ .|++|+|+.++..++...+ .++.+|.++|+.++|.. .| .+|++++.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgk 81 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDGK 81 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCce
Confidence 6888999988888889999999 9999999999866642222 24899999999999964 45 99999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEE-cCCcEEEEEeeCCCCc--eeEee
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DYMNLKLWDIRMDSTP--VATFK 366 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~-~~~~i~lwd~~~~~~~--~~~~~ 366 (501)
|.||.-.+++-. +..+ ...|...|++++|.|. |-.|+++ +||.|.|.+.+.++.- .....
T Consensus 82 VIiWke~~g~w~----k~~e-----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 82 VIIWKEENGRWT----KAYE-----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred EEEEecCCCchh----hhhh-----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 999998877322 1111 1347889999999996 4566776 5799999999864222 22344
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCC---C-----------cEEEEEeCCCeEEEEecCCCCcc-eEEEecccCccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR 431 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~ 431 (501)
.|...+ ++++|.|. | +.|++|+.|..|+||+.+++... ..+|++|.+.|+
T Consensus 147 aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred cccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 565554 78999985 4 56999999999999999987544 456999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccCC-----cccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-----~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
.+++.|.. +.- ...+|+++.|+. .||..+.. ...+..+...+..++||+.|+.||+++ ++.+.+|.
T Consensus 212 DVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999973 322 334999999999 99944321 122446788899999999999999887 56688884
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=206.69 Aligned_cols=276 Identities=14% Similarity=0.177 Sum_probs=224.3
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
+...|.+.|..+++.+.. .++++++||++++|+-..++- .....+++|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~----- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK----- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCccc-------------------------ccceecccCc-----
Confidence 345799999999988654 688999999999999765533 3445677777
Q ss_pred ccccccccceeE-EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~-v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+-|.. +++.+ .++.++++|+.|.+|.+|...+.....+.
T Consensus 58 -------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------------------- 97 (745)
T KOG0301|consen 58 -------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------------------- 97 (745)
T ss_pred -------ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhh--------------------------------
Confidence 77777 88864 46667999999999999998876633322
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|++++...++. +++| .|.++++|... ++.. .++
T Consensus 98 -----------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~ 137 (745)
T KOG0301|consen 98 -----------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQ 137 (745)
T ss_pred -----------------------------hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccC
Confidence 79999999999888886 8888 99999999876 3332 378
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|+..|++++.-|++ .+++|+.|.+|++|.-.+ .. ++| .+|..-|..+++-|++.++-+
T Consensus 138 gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~tf-------------~gHtD~VRgL~vl~~~~flSc 196 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KTF-------------SGHTDCVRGLAVLDDSHFLSC 196 (745)
T ss_pred CcchheeeeeecCCC--cEEeccCcceeeeccCCc--hh----hhh-------------ccchhheeeeEEecCCCeEee
Confidence 999999999999985 899999999999997632 22 444 457899999999999888888
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+.||.|++|++. +..+.++.+|...+ ++++..+++..++++++|++++||+.. ...+.+.
T Consensus 197 sNDg~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~ 256 (745)
T KOG0301|consen 197 SNDGSIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVIT 256 (745)
T ss_pred cCCceEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEe
Confidence 888999999994 89999999999986 788877888899999999999999977 3446676
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
-..-.++++.+-+ +|. +++|+.||. ++|..
T Consensus 257 lPttsiWsa~~L~--NgD------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 257 LPTTSIWSAKVLL--NGD------IVVGGSDGRVRVFTV 287 (745)
T ss_pred cCccceEEEEEee--CCC------EEEeccCceEEEEEe
Confidence 6677888888887 343 699999999 99933
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=198.44 Aligned_cols=279 Identities=13% Similarity=0.185 Sum_probs=214.2
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
++..+.||. ++|.+++=+ |+. ..+++|+.||.|++||+.+..+...+
T Consensus 58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f------------------ 105 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTF------------------ 105 (433)
T ss_pred chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhhee------------------
Confidence 456678998 999999987 443 57899999999999999887654433
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCe
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~ 251 (501)
..|.+.|..|++.. +..+.+|+|.+|+.|-++ . .
T Consensus 106 -------------------------------------------~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~-~-~ 139 (433)
T KOG0268|consen 106 -------------------------------------------KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID-G-P 139 (433)
T ss_pred -------------------------------------------ecccCceeeEEecc-cceEEecCCcceeeeecc-C-C
Confidence 78999999999976 444444599999999988 3 3
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..+++. -...+..+.-+..+ +.++++++ .|.|||.+-.... +.+.- -...|.
T Consensus 140 p~~til--------g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv----~smsw-------------G~Dti~ 191 (433)
T KOG0268|consen 140 PLHTIL--------GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPV----SSMSW-------------GADSIS 191 (433)
T ss_pred cceeee--------cccccccccccccc-ccccccCc--eeeecccccCCcc----ceeec-------------CCCcee
Confidence 444321 22345666666666 78888876 5899998765443 33322 024689
Q ss_pred EEEEeeCCC-EEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
++.|+|-.. .|+++ +|+.|.|||++. ..+++........ +.++|+|.+--+++|++|..++
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccce
Confidence 999999765 45555 689999999997 7777665543332 5799999777788999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccC---CCeEEEEEccCC
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTT 485 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~---~~i~~~~~sp~~ 485 (501)
.||+...+......++|.++|..+.|+| .|+- +++||.|.. +|+...+....-.-|+ +.|.++.||.|.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~E-----fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQE-----FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC--Ccch-----hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence 9999988888889999999999999999 5665 899999999 9996664443333333 478999999999
Q ss_pred CEEEEeeCCe-EEEEeC
Q 010801 486 NLIACANGNS-LFFHYA 501 (501)
Q Consensus 486 ~~la~~~~~~-~~i~~~ 501 (501)
+++++|++++ +.+|.|
T Consensus 328 kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKA 344 (433)
T ss_pred cEEEecCCCcceeeeec
Confidence 9999999655 999975
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.2e-25 Score=191.84 Aligned_cols=243 Identities=16% Similarity=0.234 Sum_probs=194.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|+-.|+.+.|+|+...+++++.|..|+||........ .....|+
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---------------------------~~~~~h~-------- 303 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---------------------------TSSRPHE-------- 303 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeeccccccCc---------------------------ccccccc--------
Confidence 68899999999999999999999999999997755432 5567788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
++|+.+..+ |.|.||++++.|++..+.|++++........
T Consensus 304 ----~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~---------------------------------- 343 (506)
T KOG0289|consen 304 ----EPVTGLSLH--PTGEYLLSASNDGTWAFSDISSGSQLTVVSD---------------------------------- 343 (506)
T ss_pred ----ccceeeeec--cCCcEEEEecCCceEEEEEccCCcEEEEEee----------------------------------
Confidence 999999998 7899999999999999999999876543210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
....-.+++++|+|||-+|.+| .|+.|+|||+..+.... .+++|++
T Consensus 344 -------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpght~ 390 (506)
T KOG0289|consen 344 -------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGHTG 390 (506)
T ss_pred -------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCCCC
Confidence 1233468899999999999999 99999999999555332 4899999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~ 348 (501)
+|..++|+.+| .+|++++.|+.|++||+|..+.. +.+.. . ....+.++.|.+.|.+|+.++ .
T Consensus 391 ~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g-~ 452 (506)
T KOG0289|consen 391 PVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAG-S 452 (506)
T ss_pred ceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeec-c
Confidence 99999999999 99999999999999999986533 44433 1 023699999999999999874 4
Q ss_pred cEEEEEeeCC---CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 349 NLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 349 ~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
.++||-.... -..+..+..|.+.. +.+.|....++++++|.|..++++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 5555555421 23444455555433 68999999999999999999988864
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.3e-26 Score=199.17 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=193.9
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+.+.+.|+.++..| ++...+++.+..+.|.|||.....-....... +
T Consensus 119 ~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~---------------------------~--- 167 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE---------------------------C--- 167 (422)
T ss_pred EeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCccccccc---------------------------C---
Confidence 3344558899999986 56677888889999999998753311110000 0
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+.-. +.+|...=++++|++.. ..+++| .|++|++||++.....-..+ .....+.+
T Consensus 168 --------------------~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~ 225 (422)
T KOG0264|consen 168 --------------------RPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSG 225 (422)
T ss_pred --------------------CCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeec
Confidence 01111 16888777889998853 356666 99999999998544321111 11124688
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~ 344 (501)
|...|..++|++....+|++++.|+.+.|||+|++. .+..+. ..+|.+.|.+++|+|-+ ..||+
T Consensus 226 h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 226 HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHS-------------VKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred CCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCccc-------------ccccCCceeEEEeCCCCCceEEe
Confidence 999999999999887899999999999999999731 111122 24578999999999955 45667
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
|+ |++|+|||+|...+++..+.+|...+ ..+.|+|. ...||+++.|+.+.|||+..-......
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred ccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 75 79999999998888999999999876 79999996 568899999999999999753222110
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEE-EEee-CCeEEEEe
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACAN-GNSLFFHY 500 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~l-a~~~-~~~~~i~~ 500 (501)
..+.. ... +.+..--+|...|..++|+|...++ ++++ ++.+.||.
T Consensus 356 eda~d-gpp--------------------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAED-GPP--------------------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhcc-CCc--------------------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 00111 111 1222233677889999999999874 4555 45588886
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=186.73 Aligned_cols=314 Identities=12% Similarity=0.097 Sum_probs=195.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|.+.|++++|+.||++|||++.|++|+||++..-+.. +.++++.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R~------------ 128 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIRQ------------ 128 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhhc------------
Confidence 359999999999999999999999999999998864331 1111110
Q ss_pred ccccccceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.++. +.-+.++|+ ||-+-++ +.-...++++|.+...+--...-.....+--.+. ..+.-.+...-......++.+
T Consensus 129 nve~-dhpT~V~Fa--pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~-~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 129 NVEY-DHPTRVVFA--PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFE-RKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred cccC-CCceEEEEC--CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccc-hhcccceEEEeecCCceEEEE
Confidence 0011 335889998 5554444 4456678999976532210000000000000000 000001111111122222222
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC--CeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~ 264 (501)
.+.+..|.+|++. ++.+... ......-+..+.+|+|++++++ .--.|++|.+--+ +...... +..++.
T Consensus 205 --as~dt~i~lw~lk----Gq~L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~--rvf~Lk 275 (420)
T KOG2096|consen 205 --ASLDTKICLWDLK----GQLLQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK--RVFSLK 275 (420)
T ss_pred --ecCCCcEEEEecC----Cceeeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh--hhheec
Confidence 3458899999998 3444444 4445556678899999999998 8888999986422 2111110 112578
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|...|..++|+++. ..+++.+.||++++||..-.-...+..+++.. ...| +..-.+.-..+..+|+|+.||.
T Consensus 276 GH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~-g~~p-----l~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE-GSAP-----LHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred cchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc-CCcc-----hhhcCCCceEEEeCCCCcEEEe
Confidence 999999999999998 99999999999999998754322222222222 0000 1111233448999999999998
Q ss_pred EcCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 345 RDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+....+++|..++ ++...+++ .|...+ .+++|+++|++++++++ ..++++.-
T Consensus 349 s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 349 SFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred ecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEeeecc-eeeeeecC
Confidence 8778999999986 55544443 444433 79999999999999875 67887763
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.1e-24 Score=181.19 Aligned_cols=311 Identities=16% Similarity=0.216 Sum_probs=214.9
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee---EeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~~ 105 (501)
.|.+.|+++.+.+ .|+|+++|+.||.|.|||++..... ++ .+..+ ..++ ...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~------e~--s~li~-------k~~c~v~~~h~~~Hk---- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY------EA--SGLIA-------KHKCIVAKQHENGHK---- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccch------hh--cccee-------heeeeccccCCccce----
Confidence 4899999999998 7899999999999999999865311 00 00000 0001 01123555
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
-.|..+.|-| -|..+|.+++.|.++++||..+.+....+
T Consensus 102 --------y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F-------------------------------- 140 (397)
T KOG4283|consen 102 --------YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDF-------------------------------- 140 (397)
T ss_pred --------eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEe--------------------------------
Confidence 7899999997 56779999999999999999987654433
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
...+.|.+-+++|- ..++++| ++-.|++-|+. .+....+
T Consensus 141 ------------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~------ 183 (397)
T KOG4283|consen 141 ------------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT------ 183 (397)
T ss_pred ------------------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee------
Confidence 22345555566652 3467778 99999999999 4444443
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccc-cCCCcceeeecccceeEEEEeeCCC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
+.+|...|.++.|+|...-.|++|+.||.|++||++...-+. .+++.|+. .+...+.-..|.+.+..++|+.++.
T Consensus 184 -LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 184 -LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred -eccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee---EEeecccCccCccccccccccceeeeeeecccch
Confidence 899999999999999986688999999999999999764432 55555432 1111123457899999999999999
Q ss_pred EEEEE-cCCcEEEEEeeCCCCceeEeec--cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 341 HLLSR-DYMNLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 341 ~l~~~-~~~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
++++. .|..+++|+...+...+..+-. |.... -+. ..+. +-+...++---.++.+.++++-+++
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-----------~~~-~~~~-~~~s~vfv~~p~~~~lall~~~sgs 326 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-----------SFA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEGS 326 (397)
T ss_pred hhhhccCccceEEeecccCcccccccccccccccc-----------cce-EEEe-ecccceEEEEecCCeEEEEEccCce
Confidence 99975 5799999998764333333211 11110 000 1122 2233344444456888888888874
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
. ...+..|-..+.+.++.+ +-.. +.+|..|+. ..|..
T Consensus 327 ~-ir~l~~h~k~i~c~~~~~--~fq~-----~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 327 F-VRRLSTHLKRINCAAYRP--DFEQ-----CFTGDMNGNIYMWSP 364 (397)
T ss_pred E-EEeeecccceeeEEeecC--chhh-----hhccccCCccccccc
Confidence 4 478888877888888877 4444 678888888 88844
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=206.00 Aligned_cols=270 Identities=13% Similarity=0.158 Sum_probs=200.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|+..-+.|+|.|+|.+|.+++.||.|++|+....+.. . ..+.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------------P---~ti~~~g------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------------P---ETIDISG------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------------C---chhhccC-------
Confidence 468889999999999999999999999999996654211 0 0111133
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++- .+.+|++++.+++|.+|.+.+++...++
T Consensus 57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL----------------------------------- 92 (933)
T KOG1274|consen 57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTIL----------------------------------- 92 (933)
T ss_pred -----ceeEEEee----cccceEEeeccceEEEeeCCCCCcccee-----------------------------------
Confidence 66888875 4669999999999999999887633221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....-++++++|+.+|++++.| +|-.|++-++....+... +.+|.
T Consensus 93 --------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------lrgh~ 138 (933)
T KOG1274|consen 93 --------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------LRGHD 138 (933)
T ss_pred --------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee--------ecccC
Confidence 2335688899999999999999 999999999885544332 78999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
++|.++.|+|.+ ++||+.+-||.|++||+.++.+......+... .+ ......+..++|+|+ |++++.+.
T Consensus 139 apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-n~--------~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 139 APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-NE--------FILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcc-cc--------ccccceeeeeeecCCCCeEEeecc
Confidence 999999999999 99999999999999999988655211111111 00 001356788999999 56666678
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++|+... ......+....... . +..++|+|+|+|||+++.||.|.|||.++-.. ...
T Consensus 209 d~~Vkvy~r~~-we~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~ 269 (933)
T KOG1274|consen 209 DNTVKVYSRKG-WELQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF 269 (933)
T ss_pred CCeEEEEccCC-ceeheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc
Confidence 89999999875 66666665433221 0 16899999999999999999999999986211 222
Q ss_pred cCcccceeeccC
Q 010801 427 KNENRKPILQAA 438 (501)
Q Consensus 427 ~~~v~~~~~~~~ 438 (501)
...|.+++|.|.
T Consensus 270 ~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 270 KRAVCCEAWKPN 281 (933)
T ss_pred cceeEEEecCCC
Confidence 344555555554
No 117
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.1e-25 Score=180.05 Aligned_cols=236 Identities=18% Similarity=0.284 Sum_probs=179.4
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
+.+++|. +.|.+|+|+ .+|..|++++.|+++.+|+++..+......
T Consensus 14 r~~~~~~------------~~v~Sv~wn--~~g~~lasgs~dktv~v~n~e~~r~~~~~~-------------------- 59 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAWN--CDGTKLASGSFDKTVSVWNLERDRFRKELV-------------------- 59 (313)
T ss_pred HHhhhhh------------hcceEEEEc--ccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence 4567787 889999998 899999999999999999998764322111
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
+ .+|.+.|-.++|+| ....++++ .|.+|++||++.++..
T Consensus 60 --------------------------------------~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 60 --------------------------------------Y-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred --------------------------------------c-cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 1 68999999999977 45677787 9999999999955544
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
..+ ....+. .-+.|+|+| +++++++.|..|.+.|.++.+..... +. ...+..
T Consensus 101 ~~i--------~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~----~~--------------~~e~ne 152 (313)
T KOG1407|consen 101 ARI--------ETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE----QF--------------KFEVNE 152 (313)
T ss_pred EEe--------eccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehh----cc--------------cceeee
Confidence 432 112222 457899999 99999999999999999987544211 11 235788
Q ss_pred EEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 333 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 333 ~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
++|+.++.+++.. +.|+|.|..... -++++.++.|...- .++.|+|+|+++|+|+.|-.+.+|
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence 8898777766654 449999999875 89999999998642 589999999999999999999999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeeccc
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
|++..-++ ..+..+.-+|+.+.|+. +|++ ||+++.|
T Consensus 217 D~~ELiC~-R~isRldwpVRTlSFS~--dg~~-----lASaSED 252 (313)
T KOG1407|consen 217 DVDELICE-RCISRLDWPVRTLSFSH--DGRM-----LASASED 252 (313)
T ss_pred ChhHhhhh-eeeccccCceEEEEecc--Ccce-----eeccCcc
Confidence 99866443 55556666666666665 5666 6666554
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.2e-25 Score=193.85 Aligned_cols=248 Identities=15% Similarity=0.179 Sum_probs=190.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++.|+||+|||+|+.|..|.||+.++.+.. ..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccc--------
Confidence 68899999999999999999999999999999987643 6689999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|- .....+++++.|++|++|+++....+.+.
T Consensus 245 ----~~V~~L~fr--~gt~~lys~s~Drsvkvw~~~~~s~vetl------------------------------------ 282 (479)
T KOG0299|consen 245 ----GAVSSLAFR--KGTSELYSASADRSVKVWSIDQLSYVETL------------------------------------ 282 (479)
T ss_pred ----cceeeeeee--cCccceeeeecCCceEEEehhHhHHHHHH------------------------------------
Confidence 999999996 55678999999999999999887654433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|.+.|.+|....-++.+.+| .|+++++|++....+.+ +.++.+
T Consensus 283 -------------------------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~ 328 (479)
T KOG0299|consen 283 -------------------------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG 328 (479)
T ss_pred -------------------------hCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence 6999999999988888888888 99999999997333332 567888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee-cccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.+-|++|-.+ ..|++|+.+|.|.+|++...+.+. +.. .|...+.. ...+++.+|++++..|...++++|+
T Consensus 329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf----~~~~AHgv~~~~--~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLF----TSRLAHGVIPEL--DPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred CeeeEEEecc--cceeeccCCceEEEeeecccCcee----EeeccccccCCc--cccccccceeeeEecccCceEEecCC
Confidence 9999999876 689999999999999998876431 111 11211211 1122346999999999999999997
Q ss_pred CCcEEEEEeeCCCCceeEeec--cccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEE
Q 010801 347 YMNLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIF 411 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iw 411 (501)
+|.|++|-+..+.+.+..+.. ..+.+ ++++|+++|+.|++| +....+--|
T Consensus 401 ~G~vrLW~i~~g~r~i~~l~~ls~~GfV---------------Nsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 401 SGCVRLWKIEDGLRAINLLYSLSLVGFV---------------NSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCceEEEEecCCccccceeeecccccEE---------------EEEEEccCCCEEEEeccccccccee
Confidence 599999999864333333221 22222 799999999966655 444444334
No 119
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=182.42 Aligned_cols=291 Identities=14% Similarity=0.204 Sum_probs=209.6
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCc-eeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE-YRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-...+.|||||.-|++-+.|..+.+|++...... ... ..+. ......++--+
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys------------~~~----~~~~~~~~~~~~r~~e---------- 103 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS------------KKA----DGPLNFSKHLSYRYQE---------- 103 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcc------------cCC----CCccccccceeEEecc----------
Confidence 34567899999999999999999999997632110 000 0000 00001111111
Q ss_pred cccceeEEEEee-----cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 112 IEEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 112 ~~~~V~~v~~~~-----~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
...|..-+|-+ +|+..++++.+.|.-|++||..+|+.......
T Consensus 104 -g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------- 151 (406)
T KOG2919|consen 104 -GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------- 151 (406)
T ss_pred -CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh-------------------------------
Confidence 15577777763 57788999999999999999999986654321
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|.. ...+++|+|||..|++|...+|++||+...++...........-
T Consensus 152 ----------------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 152 ----------------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred ----------------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 12322 33589999999999999999999999954554433322221222
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+..+.|.+++|+|.....+++++....+-||.-..++.+ .++. +|.+.|+.+.|.++|+.|.
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llg-------------gh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLG-------------GHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeec-------------ccCCCeeeEEeccCcCeec
Confidence 3456788999999998679999999999988887766544 3332 4789999999999999999
Q ss_pred EEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 344 ~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
+|. +..|-.||++....++..+..|...... . .-+...|++++|++|+.||.|++||++.......
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQ--------R----I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQ--------R----ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccc--------e----EEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 985 5899999999877778788777652211 1 2466678999999999999999999998445557
Q ss_pred EEecccCcccceeeccC
Q 010801 422 TVEAGKNENRKPILQAA 438 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~ 438 (501)
.+..+...++.+.+.|.
T Consensus 335 v~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccccccccccceecCcc
Confidence 77788888888888875
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=181.37 Aligned_cols=262 Identities=19% Similarity=0.277 Sum_probs=180.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.. ..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|.
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~-------- 65 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHV-------- 65 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccc--------
Confidence 3344 8999999999999999999999999998754 336789999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.+|.+++|+ ++|+.|+++|.|..|++||+..|.+....
T Consensus 66 ----~pi~sl~WS--~dgr~LltsS~D~si~lwDl~~gs~l~ri------------------------------------ 103 (405)
T KOG1273|consen 66 ----RPITSLCWS--RDGRKLLTSSRDWSIKLWDLLKGSPLKRI------------------------------------ 103 (405)
T ss_pred ----cceeEEEec--CCCCEeeeecCCceeEEEeccCCCceeEE------------------------------------
Confidence 899999998 89999999999999999999988755432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
...++|+.+.|+|... .+++. .+..-.+-++......+-. .. .-...+
T Consensus 104 --------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp--~d--~d~dln 153 (405)
T KOG1273|consen 104 --------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP--KD--DDGDLN 153 (405)
T ss_pred --------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc--CC--Cccccc
Confidence 3357889999988543 33333 4444555555522211110 00 001112
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
....+..|.+.| +++++|...|.+.++|..+.+.... .++.. ...|..+.++..|++|+.. +
T Consensus 154 ~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas-~rits---------------~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 154 SSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS-FRITS---------------VQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred cccccccccCCC-CEEEEecCcceEEEEecchheeeee-eeech---------------heeeeEEEEeccCcEEEEecC
Confidence 223344688998 9999999999999999988754421 11111 1468899999999999886 5
Q ss_pred CCcEEEEEeeC---CCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcce
Q 010801 347 YMNLKLWDIRM---DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGG 420 (501)
Q Consensus 347 ~~~i~lwd~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 420 (501)
|..||.|+++. .++ .+....-....+.++ .. .+++|+.+|.|++.++. -..++||.-..| .++
T Consensus 217 DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~--------~W--k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLV 285 (405)
T KOG1273|consen 217 DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL--------QW--KKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLV 285 (405)
T ss_pred CceEEEEehhhhcccCccCCcChhHHHHHHHhhh--------hh--hheeecCCccEEEeccccceeEEEEecCCc-cee
Confidence 79999999862 011 000000001111100 00 47899999999998875 467999998888 555
Q ss_pred EEEeccc
Q 010801 421 ITVEAGK 427 (501)
Q Consensus 421 ~~~~~~~ 427 (501)
+.+.+.+
T Consensus 286 KILhG~k 292 (405)
T KOG1273|consen 286 KILHGTK 292 (405)
T ss_pred eeecCCc
Confidence 7776665
No 121
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1e-25 Score=195.47 Aligned_cols=272 Identities=19% Similarity=0.279 Sum_probs=210.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|..+.|. ++...|++|+.|..|++|++..++.....
T Consensus 176 gev~~v~~l--~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~---------------------------------------- 213 (459)
T KOG0288|consen 176 GEVHDVEFL--RNSDTLATGGSDRIIKLWNVLGEKSELIS---------------------------------------- 213 (459)
T ss_pred cccceeEEc--cCcchhhhcchhhhhhhhhcccchhhhhh----------------------------------------
Confidence 889999997 66689999999999999999877622111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
+ +.+..+.|+++.|.++++.++++ .|+.+++|+++ ..+... ++.+|+..|++
T Consensus 214 ------------------t-LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~-------TLsGHtdkVt~ 266 (459)
T KOG0288|consen 214 ------------------T-LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRH-------TLSGHTDKVTA 266 (459)
T ss_pred ------------------h-hhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhh-------hhcccccceee
Confidence 1 15667889999999999998888 99999999999 444444 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|.-.. ..+++|+.|.+|++||+....... .++.. ..+..+..+ ...+++|. |++|+
T Consensus 267 ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~k---t~l~~---------------S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 267 AKFKLSH-SRVVSGSADRTIKLWDLQKAYCSK---TVLPG---------------SQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred ehhhccc-cceeeccccchhhhhhhhhhheec---ccccc---------------ccccceEec--ceeeeecccccceE
Confidence 9998876 569999999999999999854331 22222 456667666 45666774 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc----c
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----K 427 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~ 427 (501)
+||.+. ..+......+.. + +++..++++..|.+.+.|.++.+.|+.+. .+..++.+. .
T Consensus 326 fwD~Rs-~~~~~sv~~gg~-v---------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 326 FWDIRS-ADKTRSVPLGGR-V---------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCA 387 (459)
T ss_pred EEeccC-CceeeEeecCcc-e---------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccc
Confidence 999996 778888877763 3 79999999999999999999999999876 444555432 2
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCcc--ccc-ccC-CCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE--LSY-NLS-SKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~--~~~-~~~-~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
...+.+.|+| ++.+ ++.|+.||. .||+...... ... .++ ..|++++|+|.|..|++++.+ .+.+|.
T Consensus 388 sDwtrvvfSp--d~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 SDWTRVVFSP--DGSY-----VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccceeEECC--CCce-----eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3478899999 7777 999999999 9995543222 222 222 269999999999999988844 477774
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=7.7e-25 Score=194.62 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=194.0
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
..+.|.+-|.++.+|...+++.||+. |-|+|||+...... .++..+.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLd-------- 460 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLD-------- 460 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------Ccccccc--------
Confidence 34679999999999999999999985 78999998743211 0111221
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.+..+.-|.++..+ +||+-|++|+.-.++.|||+.........+
T Consensus 461 --cl~rdnyiRSckL~--pdgrtLivGGeastlsiWDLAapTprikae-------------------------------- 504 (705)
T KOG0639|consen 461 --CLNRDNYIRSCKLL--PDGRTLIVGGEASTLSIWDLAAPTPRIKAE-------------------------------- 504 (705)
T ss_pred --ccCcccceeeeEec--CCCceEEeccccceeeeeeccCCCcchhhh--------------------------------
Confidence 22223668888887 899999999999999999998654211100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
+....-....++.+||.+..+++ .||.|.|||+. ....++ .+++
T Consensus 505 ---------------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vr-------qfqG 549 (705)
T KOG0639|consen 505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVR-------QFQG 549 (705)
T ss_pred ---------------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeee-------cccC
Confidence 02223345678899999999998 99999999999 555555 3899
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...+.||.++++| ..|-+|+.|++||.||+++++...+ .-| ...|.++.++|++.+|+.|
T Consensus 550 htDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 550 HTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred CCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeee
Confidence 99999999999999 9999999999999999999864421 111 3579999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
-. +.+.|.... +.....+..|+..+ .++.|++-|+++++.+.|+.+..|.+.-|
T Consensus 611 Mens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 611 MENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred cccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc
Confidence 64 888887764 45555666666654 79999999999999999999999998776
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.8e-24 Score=199.57 Aligned_cols=281 Identities=14% Similarity=0.132 Sum_probs=223.4
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
+.|+....+.||. ..|..++.. ++..++++|.||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 3677888999999 778888874 56689999999999999987766443221
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEE-EEecC-CCCEEEEE-cCCeEEEEE
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWN 245 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~-~~~~l~~~-~d~~i~iwd 245 (501)
+.+|.+.|.. +++.+ ++..+++| .|.+|.+|.
T Consensus 53 ---------------------------------------------~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 53 ---------------------------------------------FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred ---------------------------------------------cccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 1456666655 77764 44467788 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
+. +..++.+ +.+|...|.+++...++ . +++||.|.++++|-...-. .. +.+
T Consensus 88 ~~-~~~P~~~-------LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~-------------l~g 138 (745)
T KOG0301|consen 88 LS-QAEPLYT-------LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YS-------------LQG 138 (745)
T ss_pred cC-CCCchhh-------hhccccceeeeecCCcC-c-eEecccccceEEecchhhh------cc-------------cCC
Confidence 98 4444443 89999999999988776 5 9999999999999775421 12 346
Q ss_pred cccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
|+..|++++.-|++.++-.+.|.+|++|.- ++.++++.+|.+.+ +.+++-+++ .+++++.|
T Consensus 139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~-~flScsND 199 (745)
T KOG0301|consen 139 HTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDS-HFLSCSND 199 (745)
T ss_pred cchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhe---------------eeeEEecCC-CeEeecCC
Confidence 889999999999985444445799999984 78899999999876 789998775 46799999
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccC
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~ 484 (501)
|.|++|++ ++ ....+..+|.+.++++.... +... +++.+.|++ ++|+.++......-....|.++.+-+.
T Consensus 200 g~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~--~~~~-----Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 200 GSIRLWDL-DG-EVLLEMHGHTNFVYSISMAL--SDGL-----IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred ceEEEEec-cC-ceeeeeeccceEEEEEEecC--CCCe-----EEEecCCceEEEeecCceEEEEecCccceEEEEEeeC
Confidence 99999999 45 34489999999999999665 4555 899999999 999888655555555668999999999
Q ss_pred CCEEEEeeCCeEEEEe
Q 010801 485 TNLIACANGNSLFFHY 500 (501)
Q Consensus 485 ~~~la~~~~~~~~i~~ 500 (501)
|.+++.++++-++||+
T Consensus 271 gDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 271 GDIVVGGSDGRVRVFT 286 (745)
T ss_pred CCEEEeccCceEEEEE
Confidence 9998888899999997
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-25 Score=183.85 Aligned_cols=277 Identities=16% Similarity=0.247 Sum_probs=209.4
Q ss_pred CCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCC-----ccchhhhhh---hcccc-----ccCCC
Q 010801 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-----QHISRSELE---KQMDF-----TSTSH 88 (501)
Q Consensus 22 ~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~---~~~~~-----~~~~~ 88 (501)
.++.....+|.+.|++++|++.+.++++++.|++-.||...-.-..|. ...-..+++ ....+ ....+
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 345555668999999999999999999999999999997321111110 000000010 00000 11222
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
....++..|.+|. +.|.+..|. ..|+.+++++.|++..+||+++++.....
T Consensus 260 tiRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~L--------------- 310 (481)
T KOG0300|consen 260 TIRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNIL--------------- 310 (481)
T ss_pred eeeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccc---------------
Confidence 3455778899999 889999998 78999999999999999999999866543
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
.+|....+-++-+|..++++++ .|.+.++||++
T Consensus 311 ----------------------------------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 311 ----------------------------------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred ----------------------------------------------cCcchhccccccCCcceEEEEeccCceeEeccch
Confidence 7999999999999999999998 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
..-+.+.+ +++|...|+++.|.-+ ..+++|+.|.+|++||+++.+... ..+.. .
T Consensus 345 eaI~sV~V-------FQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRspl---ATIRt--------------d 398 (481)
T KOG0300|consen 345 EAIQSVAV-------FQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPL---ATIRT--------------D 398 (481)
T ss_pred hhcceeee-------ecccccceeEEEEecC--CceeecCCCceEEEeeeccccCcc---eeeec--------------C
Confidence 44444443 7999999999999987 468999999999999999865332 33333 4
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe-----eccccccccccccCCCCCcceeeEEEEcCCC--cEE
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l 399 (501)
.+++.++.+..+..|+.-.| ..|++||+. +..+..+ ++|...+ ++++|..+. .-|
T Consensus 399 S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 399 SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNL 461 (481)
T ss_pred CccceeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCccccc
Confidence 67999999988888888866 999999996 4444433 4666554 789998653 347
Q ss_pred EEEeCCCeEEEEecCCC
Q 010801 400 ATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~ 416 (501)
++++.|..+.-|++...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 89999999999998754
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-25 Score=207.03 Aligned_cols=246 Identities=19% Similarity=0.315 Sum_probs=193.4
Q ss_pred ceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.+..|.|.. +.++|||++..|.|.+||+...- ..+.+..|..|+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~----------- 133 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE----------- 133 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc-----------
Confidence 455677765 57899999999999999988521 111335688898
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|+++.|++ ....+|++||.||+|++||++..+-+.+.
T Consensus 134 -Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t~--------------------------------------- 172 (839)
T KOG0269|consen 134 -RSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKSTF--------------------------------------- 172 (839)
T ss_pred -cceeeeeecc-CCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence 8999999994 55679999999999999999876633322
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+....|+.+.|+| .+..|+++ +.|.+++||++...++.. .+.+|.++|
T Consensus 173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV 223 (839)
T KOG0269|consen 173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPV 223 (839)
T ss_pred ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCce
Confidence 45667899999998 46678888 999999999996666554 378999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEc---
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD--- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~--- 346 (501)
.++.|+|++ .+||+|+.|+.|+|||+.+.+... ..++.. ..++..+.|-|+..+ ||+++
T Consensus 224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT--------------IAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred EEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence 999999988 999999999999999998764321 122222 368999999998765 45543
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|-.|+|||++.+--+..++..|...+ +.++|.. |...+.+++.||+|..-.++++
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 58999999997777888999998876 6899976 4567889999999876655543
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=9.9e-24 Score=185.68 Aligned_cols=261 Identities=18% Similarity=0.254 Sum_probs=193.4
Q ss_pred cccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
|.++|++++|+|.. +.+|+|+.-|.|-+||+.+.+. ...-...+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence 68999999999965 5889999999999999964432 233345677888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+|.|+| .+...+++.|.||+|++-|++++....+...
T Consensus 235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~--------------------------------- 275 (498)
T KOG4328|consen 235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL--------------------------------- 275 (498)
T ss_pred -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence 9999999997 5667899999999999999988764333211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
......+.++.|+.+...++.+ .=|...+||+++.+..+.. +.-|.
T Consensus 276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~ 322 (498)
T KOG4328|consen 276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK 322 (498)
T ss_pred --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence 1233456678888877777777 6669999999977664442 56688
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
..|.+++++|..+.+|++++.|++.+|||+|.-..... | .-....|...|.++.|||++-.|++. -
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p--~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------P--FLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------c--ceecccccceeeeeEEcCCCCceEeecc
Confidence 89999999999988999999999999999987532211 0 11124578899999999987667765 4
Q ss_pred CCcEEEEEee---CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|+|||.. ....+..++. |...... .+ ......|.|+..++++|-.-..|-|+|-..+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R--------wl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTGR--------WL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCceEEeecccccccCCccceee-ccCcccc--------cc-cchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 7999999983 2244455554 2221100 00 0136889999999999999999999998766
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.5e-24 Score=193.71 Aligned_cols=334 Identities=16% Similarity=0.234 Sum_probs=227.8
Q ss_pred hhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEee
Q 010801 17 SQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (501)
Q Consensus 17 ~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (501)
.+.|-..+...-..|++.|.|++..|.|.+||+|+.||+|+||.+.+|.++ .+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv---------------------------r~ 437 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV---------------------------RT 437 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE---------------------------EE
Confidence 444554444445579999999999999999999999999999999998753 22
Q ss_pred eccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
++ ..+.|.+|+|+|.++-..||++-.+. +-+-+..=|..+... .
T Consensus 438 ~~-------------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~-------------------- 481 (733)
T KOG0650|consen 438 VQ-------------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--P-------------------- 481 (733)
T ss_pred Ee-------------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--c--------------------
Confidence 22 12669999999777666666665555 555554333111000 0
Q ss_pred CCCCCCcccccc--eeccCcceEEEeccCceeee---eeEeecCCcccceEEEEecCCCCEEEEE----cCCeEEEEECC
Q 010801 177 HNPPSFAHGYHL--EWTENMATKIANVGNSVHAR---CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLE 247 (501)
Q Consensus 177 ~~~~~~~~~~~~--~~~~~~~i~~w~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~iwd~~ 247 (501)
....+..+ .-.++..+..|.-....+.+ |+. ..|...|..+.|+..|.+|++. ....|.|.++.
T Consensus 482 ----t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~---I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 482 ----TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV---IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred ----hhhhhhcCCCccCCcccceeechhhhhhhccceEEE---EecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 00000000 00123455667655322222 333 5788999999999999999984 34678888887
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
....+. .+....+.|.++.|+|.. .+|++++ ...|++||+..+.+.. +.+++ .
T Consensus 555 -K~~sQ~-------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvK---kL~tg--------------~ 607 (733)
T KOG0650|consen 555 -KRKSQS-------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVK---KLLTG--------------S 607 (733)
T ss_pred -cccccC-------chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHH---HHhcC--------------C
Confidence 332222 244556789999999998 6666665 4679999998876553 33333 4
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..|..++.+|.|.-|+.|+ |+.+..||+....++.+++..|...+ ++++|++.-.++++|+.||
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCC
Confidence 5899999999999888887 59999999998788999999998876 7999999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCC----CeEEEEEc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWH 482 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~----~i~~~~~s 482 (501)
++.|+.-.--.-+ ...|. ++ .+..+.+|.. .|.+..||
T Consensus 673 tv~Vfhg~VY~Dl--------------~qnpl----------iV--------------PlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 673 TVIVFHGMVYNDL--------------LQNPL----------IV--------------PLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cEEEEeeeeehhh--------------hcCCc----------eE--------------eeeeccCceeecccceEeeccc
Confidence 9999853211000 00000 00 1111222222 47889999
Q ss_pred cCCCEEEEeeCC-eEEEEe
Q 010801 483 PTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~ 500 (501)
|...+|.+++.| .+.+|.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 999999988865 688884
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.3e-23 Score=173.49 Aligned_cols=269 Identities=12% Similarity=0.221 Sum_probs=189.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|.+-|.++.|++.|+.+|+++.|++|+|||...... .+......+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence 46889999999999999999999999999999765433 677888899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|..|.|.+..=|+.+++++.|+++.||.-.......
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~------------------------------------- 97 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA------------------------------------- 97 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-------------------------------------
Confidence 99999999864558999999999999999754211100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecC------
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMK------ 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------ 259 (501)
.-+ ....++.+......|+++.|.|. |-.|+++ .||.++||+..... .+..+.+.
T Consensus 98 ------~~~---------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 98 ------HGR---------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNV 161 (361)
T ss_pred ------ccc---------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhc
Confidence 000 11112222566789999999884 6677888 99999999876322 11111111
Q ss_pred CCCCCCcccceEEEEEecCC--CcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
......+..+..|+.|+|.. ..+|++|+.+ +.+.||....+..... + ...+.+|+.+|++
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~--k-----------va~L~d~~dpI~d 228 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL--K-----------VAELPDHTDPIRD 228 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee--e-----------ehhcCCCCCccee
Confidence 11123456677899999753 2478888776 5788887665432111 1 1123468899999
Q ss_pred EEEeeC-C---CEEEEEc-CCcEEEEEeeCCCC-------------------ceeEeeccccccccccccCCCCCcceee
Q 010801 333 IKFAND-G---QHLLSRD-YMNLKLWDIRMDST-------------------PVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 333 ~~~sp~-~---~~l~~~~-~~~i~lwd~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
++|.|+ | ..||+++ || |+||.+..... .+..+..|...+ +
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W 292 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W 292 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence 999996 2 3677775 57 99999873111 122333444433 8
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+.|.-.|..|++.|.||.||+|...
T Consensus 293 rv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999999864
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=183.53 Aligned_cols=295 Identities=17% Similarity=0.195 Sum_probs=206.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|++|.|+|....|.+|+.||+++||.+++.... .++.+.--.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 578999999999999999999999999998865431 112222122
Q ss_pred cccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
-+|.+.+|. |+|. .+++++....++.||+.+.+..++......+ ...+.....+++..+++..+.
T Consensus 258 --fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 258 --FPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred --Cccceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence 668999998 7887 8889999999999999988766654222111 123333444555556555543
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.|.|.+....++ +.+..+ .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...++..+ ...-.-.
T Consensus 324 --~G~I~lLhakT~---eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~ 389 (514)
T KOG2055|consen 324 --NGHIHLLHAKTK---ELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVH 389 (514)
T ss_pred --CceEEeehhhhh---hhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccc
Confidence 566766665543 222222 235788999999999998887 99999999999 44565543 1111112
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--- 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--- 346 (501)
-++++.++++ .+||+|+..|.|.|||..+-.. ...|.+...+......|+++.|+||+++||.++
T Consensus 390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eeeeeecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 3677788998 9999999999999999765311 111222222333457899999999999999765
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+.+++-.+.. ......+...... +.-+++++|||.+.+||.|..+|.|.+|.+.
T Consensus 458 knalrLVHvPS-~TVFsNfP~~n~~------------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 458 KNALRLVHVPS-CTVFSNFPTSNTK------------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEeccc-eeeeccCCCCCCc------------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 28899998864 4444444433332 2334899999999999999999999999874
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=197.92 Aligned_cols=246 Identities=17% Similarity=0.228 Sum_probs=192.3
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
.+..+ .|++++|++|+.||.|++|++....-...
T Consensus 29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s--------------------------------------------- 62 (735)
T KOG0308|consen 29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPS--------------------------------------------- 62 (735)
T ss_pred hcccc-CCCCceEEecCCCceEEEeccccccCCcc---------------------------------------------
Confidence 34444 36788899999999999999875431100
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
..+...+ ..|.+.|+.+....+++.|+++ .|-+|++|+..... -+.. .+..|...|.|+++
T Consensus 63 ---------~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~ 125 (735)
T KOG0308|consen 63 ---------TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAY 125 (735)
T ss_pred ---------cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeee
Confidence 0011112 7899999999999999999999 99999999998544 2333 37889999999999
Q ss_pred -ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEE
Q 010801 276 -HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 353 (501)
Q Consensus 276 -~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lw 353 (501)
.++. .++|+|+.|+.|.+||+.++... ....+.. -...+...|+..+|.+++.++.|..|++|+ .+.+++|
T Consensus 126 ~ak~~-~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 126 IAKNN-ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred cccCc-eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 6776 89999999999999999987320 0011111 001111237788999999999998888885 5999999
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 433 (501)
|.++ .+.+..+.||...+ ..+-.++||+.++++|.||+|++||+...+++ .++..|...|+++
T Consensus 199 Dprt-~~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl-~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 199 DPRT-CKKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL-ATYIVHKEGVWAL 261 (735)
T ss_pred cccc-ccceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccccee-eeEEeccCceEEE
Confidence 9998 88888889999876 78999999999999999999999999877665 7899999999999
Q ss_pred eeccCCccccCccceeeeecccce
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..+++ -.. +.+|++++.
T Consensus 262 ~~~~s--f~~-----vYsG~rd~~ 278 (735)
T KOG0308|consen 262 QSSPS--FTH-----VYSGGRDGN 278 (735)
T ss_pred eeCCC--cce-----EEecCCCCc
Confidence 99974 334 788988887
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.2e-24 Score=197.67 Aligned_cols=263 Identities=14% Similarity=0.175 Sum_probs=204.6
Q ss_pred ccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc
Q 010801 20 FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (501)
Q Consensus 20 ~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (501)
..++.......-.-.+++++.||+|++||+|..-|.++||++..-+ +...+.+
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eA 499 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEA 499 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheec
Confidence 3444444555567789999999999999999999999999998544 4467889
Q ss_pred CCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC
Q 010801 100 HEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (501)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
|+ ..|.|+.|+. .-..++|++++.|+-|.+||+..+-..
T Consensus 500 He------------sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------------------- 539 (1080)
T KOG1408|consen 500 HE------------SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------------------- 539 (1080)
T ss_pred cc------------ceeEEEeecCchhhhHhhhhccCCceEEEEecccccch----------------------------
Confidence 99 7799999982 223578999999999999998764311
Q ss_pred CCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
+.++ .+|...|+++.|.-.| ..++++ .|+.|. |+.........+
T Consensus 540 -------------------------------~qtl-d~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 540 -------------------------------VQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRL 586 (1080)
T ss_pred -------------------------------hhhh-cccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCcee
Confidence 1112 7999999999997766 556666 776654 444421111111
Q ss_pred eecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 256 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
+ .. ..-.-....++.++..|.. +++++++.|+.|+|||+.+++.. +.|++ -.+|.+....+..
T Consensus 587 f-~r-~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~l 649 (1080)
T KOG1408|consen 587 F-PR-HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVIL 649 (1080)
T ss_pred c-cc-cccccccceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEE
Confidence 0 00 0001113568999999998 99999999999999999999876 67776 1346788999999
Q ss_pred eeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 336 ANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 336 sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.|.|-||++. +|.++.++|..+ ++++.++.||...+ +.+.|.+|-+.|++.+.||.|.||.+.
T Consensus 650 DPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCCccEEEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECc
Confidence 9999999976 689999999987 99999999999887 899999999999999999999999985
Q ss_pred C
Q 010801 415 V 415 (501)
Q Consensus 415 ~ 415 (501)
.
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 4
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=190.89 Aligned_cols=376 Identities=10% Similarity=0.097 Sum_probs=261.1
Q ss_pred eEEEEEccC--CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 35 VSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 35 v~~v~~s~~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
|+++. +|. =+.++.|+.+|.+.||++.+++. +.+++++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~---------------------------v~~f~~~~----------- 202 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV---------------------------VYTFQEFF----------- 202 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE---------------------------EEEecccc-----------
Confidence 66664 453 25578899999999999998875 47889998
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc-ccceec
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-YHLEWT 191 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 191 (501)
..|+++.=+ |--+.++.|..+|+|.+++++.++.+..++.. .+.+...++..++.-+ +.+.
T Consensus 203 -s~IT~ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-------------~g~VtslSFrtDG~p~las~~-- 264 (910)
T KOG1539|consen 203 -SRITAIEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQD-------------WGRVTSLSFRTDGNPLLASGR-- 264 (910)
T ss_pred -cceeEeccC--CcceEEEEeccCceEEEEEcccCcEEEEEEcc-------------ccceeEEEeccCCCeeEEecc--
Confidence 889999876 55568999999999999999998877655322 3666777776666543 4443
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
+.|.+.+||++........+ ..|.+.|..+.|-|....++++ .|+.+++|=.+++...-+.+ ..-.+|..+.
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~---nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L----R~R~GHs~Pp 337 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTR---NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL----RSRGGHSAPP 337 (910)
T ss_pred CCceEEEEEcCCCeeeeeee---ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe----eeccCCCCCc
Confidence 47899999999754433333 6888999999999999999998 88999988665433222211 1247899999
Q ss_pred EEEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccc-----------ee---------------------------e
Q 010801 271 TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-----------IL---------------------------R 311 (501)
Q Consensus 271 ~~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----------~~---------------------------~ 311 (501)
.++.|. .+| ..+.+++.|++++.+++..........+ .+ .
T Consensus 338 ~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 338 SCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred hheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 999998 555 9999999999999887754211000000 00 0
Q ss_pred cccc-----------cCCCcc-----eeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe---eccccc
Q 010801 312 DAAE-----------SHGSKS-----FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHL 371 (501)
Q Consensus 312 ~~~~-----------~~~~~~-----~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~---~~~~~~ 371 (501)
.|.. ....+. .++.....+.+++.++.|++.+.|.. |.|-+|+++. +-....+ ..|...
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGE 495 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCc
Confidence 0000 000000 01123367899999999999999864 9999999986 6666666 356665
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 451 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 451 (501)
+ ++++...-++.+++++.+|.+++||..+.. +...+.- ...+..+...- ...+ ++.
T Consensus 496 V---------------~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~~iv~hr--~s~l-----~a~ 551 (910)
T KOG1539|consen 496 V---------------TGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSITGIVYHR--VSDL-----LAI 551 (910)
T ss_pred e---------------eEEEecCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcceeeeee--hhhh-----hhh
Confidence 5 789998889999999999999999998763 2233322 12222333322 1111 344
Q ss_pred ecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 452 GLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 452 ~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+-.+=. .+.+.. .......+|..+|++++|||||++|++++ +..+++|+
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 444434 444333 23445668999999999999999999999 56699997
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=190.12 Aligned_cols=305 Identities=19% Similarity=0.216 Sum_probs=213.3
Q ss_pred EEEEEcc---CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 36 ~~v~~s~---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.+..|++ ....||.+.+||.|.++|.....- .++-+-+..+..|.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~----------- 100 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK----------- 100 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence 3367776 346799999999999999774321 11112234566788
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|.++.|. |....|++++.|.++++||+.+.++....
T Consensus 101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~--------------------------------------- 138 (720)
T KOG0321|consen 101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR--------------------------------------- 138 (720)
T ss_pred -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence 899999998 67778999999999999999988755321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCee------eee---eec---
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC------FNI---VDM--- 258 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~------~~~---~~~--- 258 (501)
.+ .+|...|.+++|.|... .|++| .||.|.|||++..... ..+ ...
T Consensus 139 -------------------~~-~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 139 -------------------LN-LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred -------------------ee-cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 11 69999999999999654 56678 9999999999853300 000 000
Q ss_pred --CC-----CCCCCcccceEE---EEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeec-
Q 010801 259 --KP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI- 326 (501)
Q Consensus 259 --~~-----~~~~~~~~~v~~---v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h- 326 (501)
++ ..-..+...|.+ +.+..|. ..||+++. |+.|++||++...... .. .+.....+..|
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~------r~---ep~~~~~~~t~s 268 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAY------RQ---EPRGSDKYPTHS 268 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccccc------cc---CCCcccCccCcc
Confidence 00 011234445555 5556676 88998888 9999999999864321 11 11111111222
Q ss_pred --ccceeEEEEeeCCCEEE-EEcCCcEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 327 --IASISDIKFANDGQHLL-SRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 327 --~~~i~~~~~sp~~~~l~-~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
...+.++.....|.+|. ++.|+.|++|++.... .++..+.++.... .+ ..-..+||+.+|++|
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSG 335 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEecc
Confidence 34567777777777765 5678999999997532 3455555554321 11 345678999999999
Q ss_pred eCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 403 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+.|...++|.+.+.+.....+.+|.-.|..+++.|...... ++++.|.. ++|.+.
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v------~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV------ATCSDDFRVKIWRLS 391 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCc------eeeccCcceEEEecc
Confidence 99999999999998777888999999999999999866654 66788888 999443
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=194.33 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=210.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
....++|+.+++-..|+.++. ..++|+.+...... ..+...+++-. .
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~-----------------------~~~~~~~k~kq---------n 85 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFS-----------------------EKCNHRFKTKQ---------N 85 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCC-----------------------cceeeeccccc---------c
Confidence 466788889999888888875 47888887744321 01111111111 0
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..-.+..|+|. +-+.++|++++..|.|.+||+......+
T Consensus 86 ~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk---------------------------------------- 124 (839)
T KOG0269|consen 86 KFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNK---------------------------------------- 124 (839)
T ss_pred eeeehhhcccc-cchhhhheeecCCCcEEEEecCccccch----------------------------------------
Confidence 11456788998 5678899999999999999997621100
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+..| ..|...+.++.|++- ..+|++| .||+|++||++..+ ...+ +.+....
T Consensus 125 -----------------~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t-------~~~nSES 178 (839)
T KOG0269|consen 125 -----------------LLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKST-------FRSNSES 178 (839)
T ss_pred -----------------hhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-cccc-------ccccchh
Confidence 11112 789999999999874 5677888 99999999999443 3332 5567788
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+.|+|+|..++.|+++...|.+++||+|....+. ..+ ..|.++|.++.|+|++.+||+|+ |+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~-------------~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE---KKL-------------TAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHH---HHh-------------hcccCceEEEeecCCCceeeecCCCc
Confidence 99999999877899999999999999999876442 222 45789999999999999999985 79
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE-EEEEe--CCCeEEEEecCCCCcceEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.|+|||... .+.......+... ++..+.|-|+.++ ||+++ .|-.|+|||+.-..-...++..
T Consensus 243 ~vkiWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 243 MVKIWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred cEEEEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 999999973 3332222222221 2268999998654 66655 3889999999987677889999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
|...+..+++... +... |-+++.|+.
T Consensus 308 H~~~vt~i~W~~~-d~~~-----l~s~sKD~t 333 (839)
T KOG0269|consen 308 HTDSVTGIAWDSG-DRIN-----LWSCSKDGT 333 (839)
T ss_pred cCccccceeccCC-Ccee-----eEeecCccH
Confidence 9999999999763 4434 788888887
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=179.16 Aligned_cols=279 Identities=16% Similarity=0.251 Sum_probs=206.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++|.|+ |....+++|+.|+++++|.+.......+...
T Consensus 214 ~~I~sv~FH--p~~plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEec--CCCceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 889999998 7788999999999999999976542221100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v 270 (501)
.-...+|.+.+|.|+|. .++++ ....++.||+. ..+..++ + .+.++ ...+
T Consensus 254 ---------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~---~--~~~g~e~~~~ 306 (514)
T KOG2055|consen 254 ---------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKL---K--PPYGVEEKSM 306 (514)
T ss_pred ---------------------eeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccc---c--CCCCcccchh
Confidence 12246888999999999 77777 89999999998 4443332 1 12333 3467
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
....++|++ ++|+..+..|.|.+.-..+++.+ ..+.. .+.|..++|+.|++.|++. ++|.
T Consensus 307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence 788999999 99999999999999998888665 44554 4689999999999877654 5799
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC-----CcceEEEe
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE 424 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~ 424 (501)
|++||++. ..++.++......- . +++|.++++.+||+|+..|.|.|||.++- ......+.
T Consensus 368 V~v~nl~~-~~~~~rf~D~G~v~-g-------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 368 VYVWNLRQ-NSCLHRFVDDGSVH-G-------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEecCC-cceEEEEeecCccc-e-------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 99999996 67888876544321 1 68999999999999999999999996542 22345566
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce---eecccc-----CCcccccccCCCeEEEEEccCCCEEEEeeCCe-
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENSSS-----GHHELSYNLSSKLLHLAWHPTTNLIACANGNS- 495 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~---~iw~~~-----~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~- 495 (501)
.-...|..+.|++ ++.+ ||.++.-.. ++-... .........-..|++|+|||.+.+||+|.+.+
T Consensus 433 NLtt~Itsl~Fn~--d~qi-----LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 433 NLTTAITSLQFNH--DAQI-----LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhheeeeeeeeCc--chhh-----hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 6677889999998 6666 665554443 333111 11111223345889999999999999999655
Q ss_pred EEEEe
Q 010801 496 LFFHY 500 (501)
Q Consensus 496 ~~i~~ 500 (501)
+.+|.
T Consensus 506 v~l~k 510 (514)
T KOG2055|consen 506 VHLFK 510 (514)
T ss_pred eeeEe
Confidence 77774
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=7.1e-23 Score=176.01 Aligned_cols=225 Identities=18% Similarity=0.212 Sum_probs=168.4
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.+.++.++-.+.++..+.++-+..|.|+||++...-. .+....
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~~----------------------------------- 193 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEPG----------------------------------- 193 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCcc-----------------------------------
Confidence 34888888887555666667778899999999865321 000000
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..++- ...+++.++ .+|...=+.|+|||- ...|++| --+.|++|...++.-.+ .+..+.+|+..
T Consensus 194 --~~~~~------s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~S 259 (440)
T KOG0302|consen 194 --LEVKD------SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKS 259 (440)
T ss_pred --ccccc------cccCceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccc
Confidence 00000 124455555 789988899999993 2357888 78899999988533222 23357789999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~ 348 (501)
|-.++|+|....+|++|+-||+|+|||+|.+.... .++ .+.|.+.|+.+.|+.+-.+||+|+| |
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~---~~~------------~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA---AVS------------TKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccc---eeE------------eeccCCceeeEEccCCcceeeecCCCc
Confidence 99999999987899999999999999999874221 111 1357789999999998889999976 9
Q ss_pred cEEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++|||++. .++++..++.|..++ +++.|+|. ...|++++.|..|.|||+...
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999984 357889999999887 89999995 567888999999999999754
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=173.20 Aligned_cols=227 Identities=16% Similarity=0.223 Sum_probs=167.4
Q ss_pred ccccccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 28 ELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+.|.+.++.+.-++-| .+.|+=+..|.|.||++... .+.+..++. .......+++.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~---------l~~l~~~~~--~~~~s~~~Pl~t~~ghk---- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH---------LNALSEPGL--EVKDSEFRPLFTFNGHK---- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhh---------hhhhcCccc--cccccccCceEEecccC----
Confidence 34578888888888865 45555568999999997632 222322222 12235677788899998
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..=+.|+|||.. ...|++|..-+.|++|...++....-.
T Consensus 212 --------~EGy~LdWSp~~-~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------- 250 (440)
T KOG0302|consen 212 --------GEGYGLDWSPIK-TGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------- 250 (440)
T ss_pred --------ccceeeeccccc-ccccccCccccceEeeeeccCceeecC--------------------------------
Confidence 667999999743 346788888889999999887643211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+ -+.+|...|..++|+|.. ..|++| .|++|+|||++...+.-.+. .
T Consensus 251 -------------------------~-Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~ 298 (440)
T KOG0302|consen 251 -------------------------R-PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------T 298 (440)
T ss_pred -------------------------c-cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------e
Confidence 0 115799999999999954 466777 99999999999654333321 4
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~ 341 (501)
..|...|+.|.|+... .+|++|+.||+++|||+|+-+.. .+...|+-|..+|+++.|+|.. .+
T Consensus 299 kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred eccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceE
Confidence 7899999999999998 69999999999999999975432 1222355688999999999953 34
Q ss_pred EEEEcCCcEEEEEeeC
Q 010801 342 LLSRDYMNLKLWDIRM 357 (501)
Q Consensus 342 l~~~~~~~i~lwd~~~ 357 (501)
.++|.|.+|.+||+..
T Consensus 364 aasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSV 379 (440)
T ss_pred EeccCCCcEEEEEeec
Confidence 4456789999999865
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=178.45 Aligned_cols=236 Identities=18% Similarity=0.291 Sum_probs=179.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.++|.|++-+|+|.||+.|+..|.|++|.+.+|..+ ..+.+|-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---------------------------~v~~aHY---------- 123 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---------------------------NVLSAHY---------- 123 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHH---------------------------HHHHhhc----------
Confidence 688999999999999999989999999999999764 5678888
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+++.|+ .||.+|++|+.||.|.+|.+.+---
T Consensus 124 --Q~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~lv~------------------------------------------ 157 (476)
T KOG0646|consen 124 --QSITCLKFS--DDGSHIITGSKDGAVLVWLLTDLVS------------------------------------------ 157 (476)
T ss_pred --cceeEEEEe--CCCcEEEecCCCccEEEEEEEeecc------------------------------------------
Confidence 889999998 8999999999999999998754210
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
........++..+ ..|.-+|+++...+. ...++++ .|.++++||+..+ ..+..+ ....
T Consensus 158 ---------a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti--------~fp~ 218 (476)
T KOG0646|consen 158 ---------ADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTI--------TFPS 218 (476)
T ss_pred ---------cccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEE--------ecCC
Confidence 0000012344444 799999999887654 4577777 9999999999944 444322 1345
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~~ 346 (501)
.+.+++.+|.+ ..+++|+.+|.|.+.++.+......... .............+.||.+ .|++++++-||.+|++|+
T Consensus 219 si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 219 SIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred cceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 78999999998 9999999999999998866432111111 0111222334445778888 999999999999999996
Q ss_pred -CCcEEEEEeeCCCCceeEeecccccc
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
||.++|||+.. .++++++....+++
T Consensus 297 ~dg~VcvWdi~S-~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 297 EDGKVCVWDIYS-KQCIRTLQTSKGPV 322 (476)
T ss_pred CCCCEEEEecch-HHHHHHHhhhcccc
Confidence 59999999986 78888777545554
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.2e-21 Score=163.26 Aligned_cols=305 Identities=13% Similarity=0.172 Sum_probs=198.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|+.+..-+ ..|+++++|+.||.|.+||++.........+-.
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------------------------------ 86 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------------------------------ 86 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhcccee------------------------------------
Confidence 8899999874 678999999999999999998643111100000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..+++ ..+....+|.-.|.++.|-| |..++.++ .|.++++||.++.+... .+ ...+.|+
T Consensus 87 k~~c~----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~-~F--------~me~~VY 147 (397)
T KOG4283|consen 87 KHKCI----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV-DF--------KMEGKVY 147 (397)
T ss_pred heeee----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE-Ee--------ecCceee
Confidence 00000 01111268899999999988 55567777 99999999999444333 22 1335677
Q ss_pred EEEEecCCC--cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEc-C
Q 010801 272 SAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-Y 347 (501)
Q Consensus 272 ~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~-~ 347 (501)
+-+++|-.. -++++|..+-.|++.|+..+... +++ .||...|.++.|+|..++++ +|+ |
T Consensus 148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~L-------------sGHr~~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTL-------------SGHRDGVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred hhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eee-------------ccccCceEEEEeccCceeEEEecCCC
Confidence 777777541 47888889999999999998643 333 45889999999999998766 554 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccc--cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe-
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE- 424 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 424 (501)
|.|++||++....+...+..|....+...+ ..+.. -+.+++|+.++.++++++.|..+++|+..+|+.....+-
T Consensus 211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g---kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 211 GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG---KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred ceEEEEEeecccceeEEeecccCccCccccccccccc---eeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence 999999999755778888777643322211 11122 237899999999999999999999999998854322221
Q ss_pred -cccCcc-cceeeccCCccccCccceeeeecccce-eecc--ccCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 425 -AGKNEN-RKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 425 -~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.|.... ..+..... +... ++.--.++. .+.+ .++.+.....|-+.|.+.++-|+=..+.++. +.+++.
T Consensus 288 ~~~n~~~~~~~~~~~~-~s~v-----fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 288 IIHNQTTSFAVHIQSM-DSDV-----FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred ccccccccceEEEeec-ccce-----EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 111100 00111100 1111 222222233 3331 1223344456677888999999988888877 555887
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 362 w~ 363 (397)
T KOG4283|consen 362 WS 363 (397)
T ss_pred cc
Confidence 75
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.3e-21 Score=162.75 Aligned_cols=246 Identities=17% Similarity=0.196 Sum_probs=184.3
Q ss_pred CCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 25 ~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
....+.|..++.+++|.++ ..+++|+.||.|+.+|+.++.. ..+..|.
T Consensus 47 l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~--- 94 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD--- 94 (323)
T ss_pred hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC---
Confidence 3445679999999999974 4588999999999999998865 4567788
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
++|.+|.++ +....+++|+.|++|++||.+.......
T Consensus 95 ---------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~-------------------------------- 131 (323)
T KOG1036|consen 95 ---------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT-------------------------------- 131 (323)
T ss_pred ---------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc--------------------------------
Confidence 999999998 5667899999999999999986332111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
......|.++..+ +..|+.| .+..|.+||++......+. .-
T Consensus 132 ------------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------re 173 (323)
T KOG1036|consen 132 ------------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RE 173 (323)
T ss_pred ------------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------cc
Confidence 1223377777654 5678887 9999999999965554422 12
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
....-.++++++-|++ .-+++++-||.|.+=.+............|..|........ .--+|++++|+|-...|+
T Consensus 174 S~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----IIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred ccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce----EEEEeceeEeccccceEE
Confidence 3345678999999977 77999999999988766655333232345666543332221 124799999999988999
Q ss_pred EE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 344 SR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
+| +||.|.+||+.+ .+.+..+...+..+ ..++|+.||..||.++.
T Consensus 249 TgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 87 579999999986 77777776654433 58999999999999875
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.2e-20 Score=172.67 Aligned_cols=290 Identities=8% Similarity=0.065 Sum_probs=190.9
Q ss_pred CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 44 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
++.+++++.|+.|++||+.+++. ...+..|. .+..++|+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~~- 39 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITLS- 39 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEEC-
Confidence 35788999999999999987653 24455443 36779997
Q ss_pred cCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 124 ~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
++++.+ ++++.++.|++||..+++.....
T Consensus 40 -~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------------------------------------------- 69 (300)
T TIGR03866 40 -KDGKLLYVCASDSDTIQVIDLATGEVIGTL------------------------------------------------- 69 (300)
T ss_pred -CCCCEEEEEECCCCeEEEEECCCCcEEEec-------------------------------------------------
Confidence 778776 56678899999999887644321
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
..+ ..+..++|+|+++.++++ .++.+++||+.. .+.+.. +. +...+.+++|+|++
T Consensus 70 ------------~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~-------~~-~~~~~~~~~~~~dg- 126 (300)
T TIGR03866 70 ------------PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAE-------IP-VGVEPEGMAVSPDG- 126 (300)
T ss_pred ------------cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeE-------ee-CCCCcceEEECCCC-
Confidence 111 124568899999977654 689999999984 444332 11 22345789999999
Q ss_pred cEEEEEeCCC-eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEeeC
Q 010801 281 NLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRM 357 (501)
Q Consensus 281 ~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~~ 357 (501)
+++++++.++ .+.+||..+++.. ..... ......++|+|++++|+++ . ++.|++||+++
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 8888888765 5677898776432 11111 1345678999999988654 3 59999999986
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE-EeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
++.+..+..+...... ... ....++|+|++++++. .+.++.|.+||+.+++.. ..+ .+...+..++++
T Consensus 189 -~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~ 257 (300)
T TIGR03866 189 -RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFT 257 (300)
T ss_pred -ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEEC
Confidence 6666655432211000 000 0146899999998654 455678999999877443 333 344578899999
Q ss_pred cCCccccCccceeeee-cccce-eeccccCCc-ccccccCCCeEEEEEcc
Q 010801 437 AAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~-~~~~~-~iw~~~~~~-~~~~~~~~~i~~~~~sp 483 (501)
| ++.. |+++ +.++. .+|+..... ..........+.++++|
T Consensus 258 ~--~g~~-----l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 258 P--DEKY-----LLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred C--CCCE-----EEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8 6665 6665 45777 999555322 22223345557777665
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.6e-24 Score=196.77 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=189.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.++..- ..++.+++|+.|..+.+|.+.....+.
T Consensus 29 aav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------------------ 64 (825)
T KOG0267|consen 29 AAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------------------ 64 (825)
T ss_pred hhhceeeee--ccceeeccCCCceeeccccccCCchhh------------------------------------------
Confidence 778888773 677889999999999999876433111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+ .+|..+|.++.|+++..+|++| .+|+|++||++ ....++ ++.+|...+.+
T Consensus 65 ------------------S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s 117 (825)
T KOG0267|consen 65 ------------------SL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS 117 (825)
T ss_pred ------------------ee-eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence 12 7999999999999999999999 99999999999 555555 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~ 351 (501)
+.|+|-+ .+++.|+.|+.+++||++..... +.+.+ |...+..+.|+|+|++++.|.+ ..++
T Consensus 118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred eeeccce-EEeccccccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceee
Confidence 9999999 99999999999999999865433 34433 6788999999999999999865 9999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
|||... ++.+..|..|...+ ..+.|+|..-++++|+.|++|++||+++- .+....+.....|.
T Consensus 180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVR 242 (825)
T ss_pred eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCce
Confidence 999985 99999999998876 67889999999999999999999999976 44455666688899
Q ss_pred ceeeccCCccccCccceeeeecccc
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQ 456 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (501)
+..|.+ +++. +.+|-...
T Consensus 243 ~~~fn~--~~~~-----~~~G~q~s 260 (825)
T KOG0267|consen 243 SLAFNP--DGKI-----VLSGEQIS 260 (825)
T ss_pred eeeecC--Ccee-----eecCchhh
Confidence 999998 6665 55554443
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-21 Score=162.61 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=178.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+-|+++.|. +.|+++++|+.|++|+|||.....-..
T Consensus 14 DlihdVs~D--~~GRRmAtCSsDq~vkI~d~~~~s~~W------------------------------------------ 49 (361)
T KOG2445|consen 14 DLIHDVSFD--FYGRRMATCSSDQTVKIWDSTSDSGTW------------------------------------------ 49 (361)
T ss_pred ceeeeeeec--ccCceeeeccCCCcEEEEeccCCCCce------------------------------------------
Confidence 889999996 789999999999999999975433111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEec-C-CCCEEEEE-cCCeEEEEECCCCCeee-eeeecCCCCCCCcccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNN-S-DCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEV 269 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~-~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 269 (501)
.+.... ..|.+.|..+.|. | -|+.++++ .|+++.||.-....... ..--.+...+......
T Consensus 50 --------------~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss 114 (361)
T KOG2445|consen 50 --------------SCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS 114 (361)
T ss_pred --------------EEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc
Confidence 111111 6899999999994 4 48888888 99999999753111000 0000111235667788
Q ss_pred eEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---CCEEEEE
Q 010801 270 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSR 345 (501)
Q Consensus 270 v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~~~ 345 (501)
|+.+.|.|.. +-+|++++.||.+|||+....-.. ..+..-++-.....++..+..+..++.|+|. ..+||.|
T Consensus 115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 9999999864 258999999999999987653222 1111101111111122335567889999974 4688888
Q ss_pred cC------CcEEEEEeeCCCC---ceeEeeccccccccccccCCCCCcceeeEEEEcCC----CcEEEEEeCCCeEEEEe
Q 010801 346 DY------MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFS 412 (501)
Q Consensus 346 ~~------~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~~~dg~i~iwd 412 (501)
++ +.++||.....++ .+.++.+|..++ ++++|.|+ -.+||+++.|| |+||.
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 65 4899998765442 244566677765 89999996 34799999999 99999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+....... .-+. ...|...+++ . -+.+...-+|..+|..+.|+-.|..|++.+
T Consensus 255 v~~~~s~i-~~ee--------~~~~~~~~~l--------------~----v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 255 VKVARSAI-EEEE--------VLAPDLMTDL--------------P----VEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred Eeeccchh-hhhc--------ccCCCCcccc--------------c----eEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 98542211 0000 0001000001 0 012333446667777777777777777776
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|| +++|.
T Consensus 308 dDG~VRLWk 316 (361)
T KOG2445|consen 308 DDGCVRLWK 316 (361)
T ss_pred CCceeeehh
Confidence 555 66664
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.7e-20 Score=173.34 Aligned_cols=265 Identities=12% Similarity=0.135 Sum_probs=175.1
Q ss_pred ccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
++...+.+++|+|+|+.+ ++++.++.|++||..+++.. ..+..+.
T Consensus 28 ~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------- 73 (300)
T TIGR03866 28 PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI---------------------------GTLPSGP------- 73 (300)
T ss_pred ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---------------------------EeccCCC-------
Confidence 334557889999999977 56678899999998876531 2333332
Q ss_pred ccccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+..++|+ ++++.++++ +.|+.|++||+.+++.....
T Consensus 74 ------~~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~---------------------------------- 111 (300)
T TIGR03866 74 ------DPELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEI---------------------------------- 111 (300)
T ss_pred ------CccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------------------------------
Confidence 24567887 778777655 56899999999876543321
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-CeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+...+.+++|+|+++.++++ .+ ..+.+||.++ ....... .
T Consensus 112 ----------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~------~-- 154 (300)
T TIGR03866 112 ----------------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNV------L-- 154 (300)
T ss_pred ----------------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEE------E--
Confidence 112235679999999999988 54 4577889873 3333221 1
Q ss_pred cccceEEEEEecCCCcEEE-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
....+..++|+|++ +.|+ ++..++.|++||+.+++.. +.+..+.... . ........++|+|++++++.
T Consensus 155 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~-~-----~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 155 VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV-H-----PEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc-c-----cccCCccceEECCCCCEEEE
Confidence 12245678999999 7665 4456999999999987543 2222100000 0 00112456889999998654
Q ss_pred E--cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCCCCcceE
Q 010801 345 R--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 345 ~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 421 (501)
+ .++.+.+||+++ ++.+..+... ..+ .+++|+|+|++|+++ +.+|.|++||+.+++.+ .
T Consensus 224 ~~~~~~~i~v~d~~~-~~~~~~~~~~-~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~ 285 (300)
T TIGR03866 224 ALGPANRVAVVDAKT-YEVLDYLLVG-QRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-K 285 (300)
T ss_pred EcCCCCeEEEEECCC-CcEEEEEEeC-CCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-E
Confidence 3 347899999975 6655544322 222 689999999999876 46899999999988443 5
Q ss_pred EEecccCcccceeecc
Q 010801 422 TVEAGKNENRKPILQA 437 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~ 437 (501)
.++.. ...+.++++|
T Consensus 286 ~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 286 SIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEcc-cccceeEeCC
Confidence 66554 4446666543
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.2e-22 Score=173.89 Aligned_cols=229 Identities=13% Similarity=0.082 Sum_probs=180.8
Q ss_pred cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
-.+.|.+++-+|+|.+++.| ..+.|++|.+. .+..+.+ +.+|-..|+++.|+-|| .+|++|+.||.|.+|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v-------~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNV-------LSAHYQSITCLKFSDDG-SHIITGSKDGAVLVW 150 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHH-------HHhhccceeEEEEeCCC-cEEEecCCCccEEEE
Confidence 35689999999999999999 99999999999 5555553 67899999999999999 999999999999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEEc-CCcEEEEEeeCCCCceeEeecccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
++..-- .... ...+.+...|..|.-+|+++...+.| .+|++++ |.++++||+.. +..+.++.-....
T Consensus 151 ~l~~lv------~a~~--~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~si- 220 (476)
T KOG0646|consen 151 LLTDLV------SADN--DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSSI- 220 (476)
T ss_pred EEEeec------cccc--CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCcc-
Confidence 986421 1111 11455666788899999999988753 4666664 79999999986 8887777644432
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC---------------cceEEEecccC--cccceee
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------AGGITVEAGKN--ENRKPIL 435 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~~~~ 435 (501)
.+++.+|-++.+..|+.+|.|.+.++.... .....+.+|.+ +|+++++
T Consensus 221 ---------------~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 221 ---------------KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ---------------eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 689999999999999999999998875422 11345778888 9999999
Q ss_pred ccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCC
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
+. ||.+ |++|+.||+ .+|+.. +.+..+....++|+.+.+.|-..
T Consensus 286 s~--Dgtl-----LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 286 ST--DGTL-----LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ec--CccE-----EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 98 8888 999999999 999554 34444444667888888876543
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.7e-20 Score=170.39 Aligned_cols=393 Identities=15% Similarity=0.106 Sum_probs=259.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|++++.+|.++.++.||.||.+..++...++. .+...|.-.+
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-------------------------~~~r~l~rq~---------- 154 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-------------------------TYKRSLMRQK---------- 154 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecCCceE-------------------------EEEeeccccc----------
Confidence 68999999999999999999999777777665543 2444444444
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|.+++|. +++..+++|+.||.|++||...+........+...- ......+++....-....+++|.
T Consensus 155 --sRvLslsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------~k~~~~iVWSv~~Lrd~tI~sgD-- 222 (691)
T KOG2048|consen 155 --SRVLSLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------SKREPTIVWSVLFLRDSTIASGD-- 222 (691)
T ss_pred --ceEEEEEec--CCccEEEecccCceEEEEEcCCCceEEEeeeccccc------ccCCceEEEEEEEeecCcEEEec--
Confidence 889999997 889999999999999999999887665433322110 00011122222222333344443
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
+.|.+++||..... ..+.+ ..|.+.|.+++..+++..++++ .|+.|..+.....+...- .......|...|
T Consensus 223 S~G~V~FWd~~~gT---LiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv----~~~~r~~h~hdv 294 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGT---LIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWV----INSRRDLHAHDV 294 (691)
T ss_pred CCceEEEEcccCcc---hhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcccee----eeccccCCcccc
Confidence 37899999998643 33333 5789999999999998888887 999999888774443211 112356788889
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccc-------------------cccceeecccccCC-------------
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-------------------HSARILRDAAESHG------------- 318 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~-------------------~~~~~~~~~~~~~~------------- 318 (501)
++++..++ .+++|+.|..+.+-..+..+... +....+..|.....
T Consensus 295 rs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~ 371 (691)
T KOG2048|consen 295 RSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNY 371 (691)
T ss_pred eeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccCh
Confidence 99998865 68899999888876655421110 00011111111000
Q ss_pred --CcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 319 --SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 319 --~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
.......-...|.+.+.+|+|++|+.++-..+++|.+.... .+........+. ...++..+.|+-|+
T Consensus 372 ~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~----------~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 372 IHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPL----------ALLDASAISFTIDK 440 (691)
T ss_pred hhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchh----------hhccceeeEEEecC
Confidence 00011222457899999999999999877889999997533 333333222211 11122578888888
Q ss_pred cEEEEEe-CCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccc-
Q 010801 397 LHFATGS-YSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY- 470 (501)
Q Consensus 397 ~~l~s~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~- 470 (501)
..++.++ .+..+.++++++.... ...-++....+..++.++ +|.+ +|..+.++. .+|++.......+
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss--dG~y-----iaa~~t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS--DGNY-----IAAISTRGQIFVYNLETLESHLLK 513 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC--CCCE-----EEEEeccceEEEEEcccceeecch
Confidence 8887777 6788888888765332 112224567788888888 7888 898888888 9997665443322
Q ss_pred -ccCCCeEEEEEccC-CCEEEEee-CCeEEEEe
Q 010801 471 -NLSSKLLHLAWHPT-TNLIACAN-GNSLFFHY 500 (501)
Q Consensus 471 -~~~~~i~~~~~sp~-~~~la~~~-~~~~~i~~ 500 (501)
.....|++++++|. .+.|+++. ++.+|=|+
T Consensus 514 ~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 514 VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred hccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 44578999999955 56677666 56677664
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.7e-22 Score=178.54 Aligned_cols=256 Identities=19% Similarity=0.292 Sum_probs=200.2
Q ss_pred chhhhhhhccCCCCCCccc---cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 12 LEWKCSQAFGERNPDEELQ---DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
..|.++|. +++.++..+. ....|+++...|||+.|++|++-.++.|||+.....
T Consensus 443 KVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---------------------- 499 (705)
T KOG0639|consen 443 KVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---------------------- 499 (705)
T ss_pred EEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc----------------------
Confidence 45888887 5555555543 578899999999999999999999999999885432
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
+...++.... -..++++.+ ||.+...++..||.|.|||+.+...+..+
T Consensus 500 ---rikaeltssa------------paCyALa~s--pDakvcFsccsdGnI~vwDLhnq~~Vrqf--------------- 547 (705)
T KOG0639|consen 500 ---RIKAELTSSA------------PACYALAIS--PDAKVCFSCCSDGNIAVWDLHNQTLVRQF--------------- 547 (705)
T ss_pred ---chhhhcCCcc------------hhhhhhhcC--CccceeeeeccCCcEEEEEcccceeeecc---------------
Confidence 2223333322 346777776 78889999999999999999986644432
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
.+|.+.+.||..++||..|-+| -|++|+.||++
T Consensus 548 ----------------------------------------------qGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 548 ----------------------------------------------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred ----------------------------------------------cCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 8999999999999999999999 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
...+..+ ......|.++-++|.+ .++++|-+++.+.+......+. ..+ -.|.
T Consensus 582 egrqlqq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yql-------------hlhe 633 (705)
T KOG0639|consen 582 EGRQLQQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQL-------------HLHE 633 (705)
T ss_pred hhhhhhh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eee-------------cccc
Confidence 5554332 2345789999999999 9999999999988877655421 111 1256
Q ss_pred cceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.-|.++.|.+.|+++++. -|+-+..|.... +..+...+..... .++.+|.|.++|++|+.|.
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~SsV----------------lsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSV----------------LSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCcc----------------eeeeeccCceEEEecCCCc
Confidence 789999999999999975 479999999875 6655555433322 6899999999999999999
Q ss_pred eEEEEec
Q 010801 407 LLRIFSH 413 (501)
Q Consensus 407 ~i~iwd~ 413 (501)
...||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 9888875
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-21 Score=172.28 Aligned_cols=262 Identities=15% Similarity=0.145 Sum_probs=188.9
Q ss_pred cceeEEEEeecCCCCEEEEe--eCCCeEEEEecccc--ceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~--s~d~~i~lw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.+.+++|. . ...|+++ +.|+.+++|.-... +...+..... ....+........++.+|+
T Consensus 35 pg~~s~~w~--~-~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-------------d~~~Cv~~~s~S~y~~sgG 98 (673)
T KOG4378|consen 35 PGDFSFNWQ--R-RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-------------DNAFCVACASQSLYEISGG 98 (673)
T ss_pred Ccceeeecc--c-cceEEEeecCCceeEEEecccCCCCccceeecccc-------------chHHHHhhhhcceeeeccC
Confidence 559999996 2 3345555 47899999976543 2221111110 1111122222223444444
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC-cc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 267 (501)
. ++.+++||+.. ..+.+ ++.+|...|+++.++-...+|+++ ..|.|.|-.+.+... ... +.. ..
T Consensus 99 ~--~~~Vkiwdl~~---kl~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~-------f~~~sg 164 (673)
T KOG4378|consen 99 Q--SGCVKIWDLRA---KLIHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTT-------FTIDSG 164 (673)
T ss_pred c--CceeeehhhHH---HHHhh-hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccc-------eecCCC
Confidence 3 77999999984 23334 348999999999999989999999 899999999884433 222 322 24
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-E-E
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S-R 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~-~ 345 (501)
..|+-+.|+|....+|.+++.+|.|.+||+...... ..+ ...|..+...++|+|....|+ + |
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEec
Confidence 567799999988567888999999999999876533 111 234788999999999776554 3 3
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
-|..|++||++. .+....+...... ..++|+++|.+|+.|+..|.|..||+...+..+..+.+
T Consensus 229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 579999999985 6666666543332 68999999999999999999999999998888899999
Q ss_pred ccCcccceeeccC
Q 010801 426 GKNENRKPILQAA 438 (501)
Q Consensus 426 ~~~~v~~~~~~~~ 438 (501)
|...|++++|.+.
T Consensus 292 h~~sVt~vafq~s 304 (673)
T KOG4378|consen 292 HDASVTRVAFQPS 304 (673)
T ss_pred cccceeEEEeeec
Confidence 9999999999986
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=165.33 Aligned_cols=289 Identities=18% Similarity=0.217 Sum_probs=194.3
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
..+|++...|.|++||..+++.+ ..+++|. ..++.++|...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------------~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------------EEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------------heecCCC------------CcccceEEecC
Confidence 56899999999999999987653 7788888 88999999842
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
.....+.+|+.||+|++||++.......+..
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~------------------------------------------------- 112 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARISW------------------------------------------------- 112 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence 2456788999999999999987653332211
Q ss_pred eeeeeeEeecCCcc-cceEEEEecCCCCEEEEE-----cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 205 ~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
.++. .+..+++.+-.++.+++| .+-.|.+||++...+.+..+ .+.|...|+++.|+|.
T Consensus 113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS 176 (376)
T ss_pred ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence 2333 456677776677788876 37789999999766655543 6789999999999999
Q ss_pred CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEEcCCcEEEEEee
Q 010801 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 279 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~~~~i~lwd~~ 356 (501)
.+++|++|+.||.|.+||+...........++.. ...|..+.|..++ +........+..+|+++
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999999999999999999876443333333333 5679999999888 53334456999999998
Q ss_pred CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC---CCC--cceEEEec-ccCc
Q 010801 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG---VGS--AGGITVEA-GKNE 429 (501)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~~--~~~~~~~~-~~~~ 429 (501)
. +.+...+........... .......+.......++...+.++. -|...++-+. ++. .....+++ |..-
T Consensus 243 ~-~~~~~~~~~~~~~~~d~r---~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 243 D-GSEETWLENPDVSADDLR---KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred C-CChhhcccCccchhhhHH---hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 5 554444432211100000 0000000011111223444444443 5666666543 221 22455666 6677
Q ss_pred ccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|+.+.|.. .+.+ +.+|+.||. .+|..
T Consensus 319 VR~i~~~~--~~~~-----l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 319 VRDILFDV--KNDV-----LYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHhhhc--ccce-----eeccCCCceEEEEec
Confidence 77777765 4445 899999999 99963
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.9e-23 Score=192.50 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=193.1
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.-|...|.|+..-..++.+++|+.|..+.+|....-. .+..|.+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he------- 70 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE------- 70 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC-------
Confidence 3588999999997788999999999999999976432 335689999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.+|.+|.|+ ++..+|++|+.+|+|++||++..+....+
T Consensus 71 -----spIeSl~f~--~~E~LlaagsasgtiK~wDleeAk~vrtL----------------------------------- 108 (825)
T KOG0267|consen 71 -----SPIESLTFD--TSERLLAAGSASGTIKVWDLEEAKIVRTL----------------------------------- 108 (825)
T ss_pred -----CcceeeecC--cchhhhcccccCCceeeeehhhhhhhhhh-----------------------------------
Confidence 999999997 67778889999999999999987644432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...+.++.|+|-+.++++| .|..+++||.+ ...+... +.+|.
T Consensus 109 --------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~ 154 (825)
T KOG0267|consen 109 --------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHT 154 (825)
T ss_pred --------------------------hccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCc
Confidence 6999999999999999999998 99999999999 4445543 67799
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..+..+.|+|+| ++++.+++|..+++||+..++.. +.|. .|.+.+..+.|+|..-++++|+
T Consensus 155 ~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~-------------~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 155 RVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFK-------------SHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ceeEEEeecCCC-ceeeccCCcceeeeecccccccc----cccc-------------cccccccccccCchhhhhccCCC
Confidence 999999999999 99999999999999999988654 3444 4678999999999888888885
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|+++++||+++ ...+.........+ .+..|+|+++.+.+|..+.
T Consensus 217 d~tv~f~dlet-fe~I~s~~~~~~~v---------------~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDLET-FEVISSGKPETDGV---------------RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred Cceeeeeccce-eEEeeccCCccCCc---------------eeeeecCCceeeecCchhh
Confidence 69999999986 45444444333332 7899999999988887653
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=8.8e-21 Score=164.88 Aligned_cols=252 Identities=17% Similarity=0.294 Sum_probs=169.6
Q ss_pred ccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+|..+.|.+++. .||||+.|..|+||.+..++.. ......++...+..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEEEeecccCCc---------
Confidence 46799999999776 9999999999999998866431 0113556778888998
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|++++|+ |+|..|++|+.+|.|.+|....-......+ ..
T Consensus 66 ---~aVN~vRf~--p~gelLASg~D~g~v~lWk~~~~~~~~~d~---e~------------------------------- 106 (434)
T KOG1009|consen 66 ---RAVNVVRFS--PDGELLASGGDGGEVFLWKQGDVRIFDADT---EA------------------------------- 106 (434)
T ss_pred ---ceeEEEEEc--CCcCeeeecCCCceEEEEEecCcCCccccc---hh-------------------------------
Confidence 899999998 899999999999999999876411100000 00
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
+-.- +...++..+.+|...|..++|+|++.+++++ .|+.+++||+. .++...+ +.+|...
T Consensus 107 --~~~k---------e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y 167 (434)
T KOG1009|consen 107 --DLNK---------EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY 167 (434)
T ss_pred --hhCc---------cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence 0000 0112222237899999999999999999999 99999999999 5666654 7889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecc--cccCCCc-ceee--ecccceeEEEEeeCCCEEE
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDA--AESHGSK-SFFT--EIIASISDIKFANDGQHLL 343 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~--~h~~~i~~~~~sp~~~~l~ 343 (501)
+..++|.|.+ +++++-+.|...+.+.+...+...... ..+... .+..... +.+. ....-...++|+|||.+|+
T Consensus 168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 9999999998 999999999877777766543332111 011110 0000000 0000 0123356788999999998
Q ss_pred EEc-----C-----CcEEEEEeeCCCCceeEeeccc
Q 010801 344 SRD-----Y-----MNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 344 ~~~-----~-----~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+.. . +..++|+-....++...+....
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK 282 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCCC
Confidence 642 1 3346665443345555554433
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=7.9e-21 Score=173.99 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=132.8
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
..|+.+.|+|-....|++++.||.|++|.+..+.+... ...+...+.+|...|+++.|+|= ...|++++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~----------~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN----------EMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----------cCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 34677888886667899999999999999987654321 11223446678899999999994 45667665
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|.+|++||+++ .+....+.+|.+.+ .+++|||+|+.+|+.+.||+|++|+-..+.....+-++
T Consensus 698 yd~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 698 YDSTIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred ccceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 59999999996 88888999999865 79999999999999999999999998877554433333
Q ss_pred ccC-cccceeeccCCccccCccceeeeecccce-----eecccc----CCcc-cccccCCCeEEEEEccCCCEEEEee--
Q 010801 426 GKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-----HENSSS----GHHE-LSYNLSSKLLHLAWHPTTNLIACAN-- 492 (501)
Q Consensus 426 ~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~iw~~~----~~~~-~~~~~~~~i~~~~~sp~~~~la~~~-- 492 (501)
..+ .--.+.|.. +|++ ++..+.|+. .+++.. ..+. ..++....+.--.+.+|.+.|...+
T Consensus 762 pvgtRgARi~wac--dgr~-----viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 762 PVGTRGARILWAC--DGRI-----VIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred CccCcceeEEEEe--cCcE-----EEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCC
Confidence 222 111333333 7776 666655544 233111 1111 1112222233234556777666554
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
+..+++|.
T Consensus 835 D~~v~~yE 842 (1012)
T KOG1445|consen 835 DRFVNMYE 842 (1012)
T ss_pred CceEEEEE
Confidence 34466664
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.6e-20 Score=158.85 Aligned_cols=321 Identities=14% Similarity=0.175 Sum_probs=211.1
Q ss_pred ccccceEEEEEcc-----CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCc
Q 010801 30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEP 102 (501)
Q Consensus 30 ~h~~~v~~v~~s~-----~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 102 (501)
.|+.+|..++|++ +-+.+|+++. .++.||.....-. .+.+..+. .|+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~d~~- 89 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADEDHD- 89 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCCCCC-
Confidence 5788999999995 3356677664 5788998764321 11222222 233
Q ss_pred chhhccccccccceeEEEEeecCC--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
+.-..++|+.+.. ..+++.++.-|.|+|.|+.++++....
T Consensus 90 -----------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--------------------------- 131 (385)
T KOG1034|consen 90 -----------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------------------------- 131 (385)
T ss_pred -----------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce---------------------------
Confidence 7788889985433 457888889999999999988755432
Q ss_pred CCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeec
Q 010801 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
.+|...|+.+.+.|+. ++++++ .|..|++|+++ ...++.++
T Consensus 132 ----------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf-- 174 (385)
T KOG1034|consen 132 ----------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF-- 174 (385)
T ss_pred ----------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe--
Confidence 6999999999999975 566777 99999999999 56666654
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc-----CC---Cc---ceeeecc
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-----HG---SK---SFFTEII 327 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~---~~---~~~~~h~ 327 (501)
..+++|...|.++.|+++| ..|++++.|.+|++|++...+........+.-.++. |. .. +.-.-|.
T Consensus 175 --GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 175 --GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred --cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 3568999999999999999 899999999999999998654322111111110000 00 00 1123477
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..|.++.|- |.++++-+ ++.|..|....-.+.+............+..+.-..|-......+|.|-+++||.|...|
T Consensus 252 nyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred chHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 888888887 67888754 589999987211222222222222222222222222222224567777799999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCC
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
.|++||+++.+... +..... + ...+.|.+.+|+-|+.
T Consensus 330 ~v~vwdL~~~ep~~-----------~ttl~~---------------s-----------------~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPK-----------CTTLTH---------------S-----------------KSGSTVRQTSFSRDGS 366 (385)
T ss_pred cEEEEECCCCCCcc-----------CceEEe---------------c-----------------cccceeeeeeecccCc
Confidence 99999999774420 000000 0 1123688999999999
Q ss_pred EEEEeeCCe-EEEE
Q 010801 487 LIACANGNS-LFFH 499 (501)
Q Consensus 487 ~la~~~~~~-~~i~ 499 (501)
.|+..++++ +.-|
T Consensus 367 ~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRW 380 (385)
T ss_pred EEEEEeCCCcEEEE
Confidence 988888765 4444
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1e-20 Score=173.35 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
..|...|..+.|.|....|+++ .|.++++||++ +..+... ..+.+|...|.+++|.|..+..|++|+.||.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 6899999999999966677888 99999999999 4444331 125789999999999999988999999999999
Q ss_pred EEEccCCcccc---cccceeecccccCCC-------cceeeecccceeE---EEEeeCCCEEEEEc--CCcEEEEEeeCC
Q 010801 294 LVDMRQSALCD---HSARILRDAAESHGS-------KSFFTEIIASISD---IKFANDGQHLLSRD--YMNLKLWDIRMD 358 (501)
Q Consensus 294 ~wd~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~h~~~i~~---~~~sp~~~~l~~~~--~~~i~lwd~~~~ 358 (501)
|||++-..... ...+....|+..+.+ ......+...|.+ +.+..|...||+++ |+.|+|||+++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk- 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK- 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc-
Confidence 99998764110 001222222222211 1123445566666 66778888898764 69999999986
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc-ceEEEecccCcccceeecc
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 437 (501)
........ .. ....-.+++..-.+++++.....|.+|.+.+.|+.|+.|++..... ....+.++...-..+.-..
T Consensus 250 ~~~~~r~e--p~--~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 250 NYTAYRQE--PR--GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL 325 (720)
T ss_pred cccccccC--CC--cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeec
Confidence 32221111 00 0000112222233446788888889988888899999999986432 2344444444333333333
Q ss_pred CCccccCccceeeeecccce-eecccc---CCcccccccCCCeEEEEEccCCC-EEEEee-CCeEEEEe
Q 010801 438 APRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY 500 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~-~iw~~~---~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~ 500 (501)
..++.+ +++|+.|.. .+|..+ .....+.+|...|++++|.|... -+|+++ +..+.||.
T Consensus 326 Spd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 326 SPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 347777 999999999 999444 45566789999999999988752 244446 45599986
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3e-21 Score=163.26 Aligned_cols=268 Identities=14% Similarity=0.213 Sum_probs=185.1
Q ss_pred ccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+|.+....++|+-+ ..+||.|+.-|.|+|.|+.+++.. ..+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~---------------------------~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS---------------------------KNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc---------------------------cceeccC----
Confidence 46777889999764 347899999999999999987654 7788998
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|+.|+|+| .+.++++++|.|.+||+|++++..++.++...
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~----------------------------- 177 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV----------------------------- 177 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-----------------------------
Confidence 8999999996 35579999999999999999999988776332
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eee---eeecC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFN---IVDMK 259 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~---~~~~~ 259 (501)
.+|.+.|.++.|+++|.+|+++ .|.++++|+++...- .+. .+..+
T Consensus 178 -----------------------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~ 228 (385)
T KOG1034|consen 178 -----------------------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN 228 (385)
T ss_pred -----------------------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence 7999999999999999999998 999999999983210 000 00000
Q ss_pred -------------C--CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 260 -------------P--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 260 -------------~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+ .+-.-|...|.|+.|- | +++++-+-++.|..|..-.-+.... .+... .........+.
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~--~vkp~-es~~Ti~~~~~ 302 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH--NVKPP-ESATTILGEFD 302 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh--ccCCC-ccceeeeeEec
Confidence 0 0123466677777775 4 6788888899999998732111000 00000 00000001112
Q ss_pred ecccceeEEEE--eeCCCEEEEEcC-CcEEEEEeeCCCCce-eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 325 EIIASISDIKF--ANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 325 ~h~~~i~~~~~--sp~~~~l~~~~~-~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
-....|.-+.| .|-++.||.|.. |.|++||++....+. .++..+.... .|...+|+.||.+|+
T Consensus 303 ~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~-------------tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS-------------TVRQTSFSRDGSILV 369 (385)
T ss_pred cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc-------------eeeeeeecccCcEEE
Confidence 22344555544 566889999876 999999998633222 2222221111 127899999999999
Q ss_pred EEeCCCeEEEEecC
Q 010801 401 TGSYSNLLRIFSHG 414 (501)
Q Consensus 401 s~~~dg~i~iwd~~ 414 (501)
...+|++|.-||.-
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 99999999999853
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.5e-22 Score=193.73 Aligned_cols=251 Identities=16% Similarity=0.164 Sum_probs=187.4
Q ss_pred ccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+-+.++|.+..++ ..|+.|..||.|.+||...-..-.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------------------------------------- 104 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------------------------------------- 104 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------------------------------------
Confidence 366889999842222 247778899999999987531000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
....+..+ ..|.+.|..+.|++.+. +|++| +||.|.|||++........ .-.....
T Consensus 105 ---------------~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~ 162 (1049)
T KOG0307|consen 105 ---------------SEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPS 162 (1049)
T ss_pred ---------------chHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcc
Confidence 00111122 68999999999999766 88899 9999999999954443321 0122457
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE--
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-- 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~-- 345 (501)
.|.+++|+..-...|++++.+|.+.|||++..+.+. .+.. .+ -...+..++|+|+.. .|+++
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii----~ls~---~~--------~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII----KLSD---TP--------GRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccc----cccc---CC--------CccceeeeeeCCCCceeeeeecC
Confidence 899999997765789999999999999999875432 1111 00 013578999999863 34443
Q ss_pred cC--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+| -.|.+||+|....+++++++|...+ .++.|++.+ .+|++++.|+.|.+|+.+++ +....
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~ 291 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGE 291 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeee
Confidence 34 6899999998788999999998876 799999965 89999999999999999998 55588
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
+....+++..+.|.|..++. ++..+.+|. .|+.
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~------~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSV------MAAASFDGKISIYS 325 (1049)
T ss_pred cCCCCcceeeeeecCCCcch------hhhheeccceeeee
Confidence 88899999999999975544 588888888 8883
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1e-19 Score=151.53 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=156.9
Q ss_pred CCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
..+.+++++..|+. +.+++.++ -|-+..|||++.+.. .+++ .+-.|...|..++|...+.++|++.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 45678999999976 66788888 899999999995411 1232 367899999999999977789999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEE-cC-CcEEEEEeeCCCCceeEeecc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~-~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
||+||+|..+.. .-+++. +. ...+...++|++. -+++|+- .| ..|.+.|++....++.++++|
T Consensus 221 vRmFDLR~leHS---TIIYE~-p~----------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYED-PS----------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred EEEEEecccccc---eEEecC-CC----------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 999999975432 123333 11 1357888999974 4677764 34 899999999989999999999
Q ss_pred ccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccc
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 447 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 447 (501)
...+ +.++|.|. ...|++++.|..+.|||+...-.. .-..++
T Consensus 287 ~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi----------------- 329 (364)
T KOG0290|consen 287 QASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI----------------- 329 (364)
T ss_pred cccc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------------
Confidence 9977 79999996 568999999999999999854110 000000
Q ss_pred eeeeecccceeeccccCCcccccccCCCeEEEEEccC-CCEEEEeeCCeEEEE
Q 010801 448 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH 499 (501)
Q Consensus 448 ~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~i~ 499 (501)
|+ ......|+.++|+|. ..+++++..+.+-+.
T Consensus 330 -la-------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 330 -LA-------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred -hh-------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 11 123458999999965 689999998887664
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=165.16 Aligned_cols=267 Identities=17% Similarity=0.196 Sum_probs=181.2
Q ss_pred eEEEEEcc-------CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 35 v~~v~~s~-------~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|++|-. .|+|+|.|+.|..|-|||+.--...-+.-.+...+..... -..+--..-++|+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~------k~~k~~~~~~gHT------ 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK------KKGKRSNSASGHT------ 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh------hhcccccccccch------
Confidence 35566543 3689999999999999998732221000000000000000 0000001234677
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.++.|+. --.+.|++||.|.+|++||+.++++...+
T Consensus 244 ------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~---------------------------------- 282 (463)
T KOG0270|consen 244 ------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSI---------------------------------- 282 (463)
T ss_pred ------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceeh----------------------------------
Confidence 8899999973 34568999999999999999999876654
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..|...|.+++|+|. ...|++| .|++|.+.|.+.....-.. -.
T Consensus 283 ---------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk 327 (463)
T KOG0270|consen 283 ---------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WK 327 (463)
T ss_pred ---------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EE
Confidence 578899999999885 5677888 9999999999843222211 12
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~ 344 (501)
..+.|-.++|+|.....++++..||+|+-+|+|+... .+|.. ..|..+|.++++++.-.. +++
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcceee
Confidence 3567899999999877889999999999999998642 23333 558899999999987654 555
Q ss_pred E-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCCcc
Q 010801 345 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+ +++.|++|++.. ..+ .....|.-....+ .++++.|+-. +|+.|+..+.++|||+.+....
T Consensus 392 ~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5 469999999974 332 1222233222111 4677777643 5778888889999999887544
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.6e-20 Score=174.65 Aligned_cols=270 Identities=13% Similarity=0.188 Sum_probs=205.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+-+.|+|. ++|.+|++++.||.|++|+..... .-...
T Consensus 14 ~G~t~i~~d--~~gefi~tcgsdg~ir~~~~~sd~e~P~ti--------------------------------------- 52 (933)
T KOG1274|consen 14 GGLTLICYD--PDGEFICTCGSDGDIRKWKTNSDEEEPETI--------------------------------------- 52 (933)
T ss_pred CceEEEEEc--CCCCEEEEecCCCceEEeecCCcccCCchh---------------------------------------
Confidence 778999996 899999999999999999876542 10000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..++..|.+++.. +..|++| .+++|.+|.+..... -.+ +....-+++
T Consensus 53 ----------------------~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~-~~i-------L~Rftlp~r 100 (933)
T KOG1274|consen 53 ----------------------DISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE-DTI-------LARFTLPIR 100 (933)
T ss_pred ----------------------hccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc-cce-------eeeeeccce
Confidence 2255667776653 4478888 999999999884332 221 445667899
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++|+.+| ++++.|+.|-.|++-++...... +.+ .+|.++|.++.|+|++++||+.+ +|.|
T Consensus 101 ~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~----~~l-------------rgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 101 DLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE----KVL-------------RGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred EEEEecCC-cEEEeecCceeEEEEeccccchh----eee-------------cccCCceeeeeEcCCCCEEEEEecCceE
Confidence 99999999 99999999999999998876533 333 45889999999999999999874 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE--ecccC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV--EAGKN 428 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 428 (501)
++||+.. +....++.+-....... ...+ +..++|+|+|..++....|+.|++|+..+.... ..+ +-+..
T Consensus 163 ~iw~~~~-~~~~~tl~~v~k~n~~~-----~s~i--~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss 233 (933)
T KOG1274|consen 163 QIWDLQD-GILSKTLTGVDKDNEFI-----LSRI--CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSS 233 (933)
T ss_pred EEEEccc-chhhhhcccCCcccccc-----ccce--eeeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeeccccccc
Confidence 9999985 77766665432211000 0011 168999999888999999999999999887444 333 33444
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+..+.|+| +|++ ||.+..++. .+|+.+.+.. ..+...|.+++|.|+.+.|-+-.
T Consensus 234 ~~~~~~wsP--nG~Y-----iAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 234 KFSDLQWSP--NGKY-----IAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred ceEEEEEcC--CCcE-----EeeeccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEe
Confidence 488899999 7999 999999999 9998877433 56778999999999999877654
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=171.47 Aligned_cols=233 Identities=18% Similarity=0.285 Sum_probs=173.6
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.|..++|-|||..|+.+. +..+.|||...|... .++++|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---------------------------qtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---------------------------QPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc---------------------------ccccccc------------
Confidence 799999999999888765 558999999977654 7899999
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++++|+ .||+++++|+.|+.|.+|..+-....+
T Consensus 54 DtVycVAys--~dGkrFASG~aDK~VI~W~~klEG~Lk------------------------------------------ 89 (1081)
T KOG1538|consen 54 DTVYCVAYA--KDGKRFASGSADKSVIIWTSKLEGILK------------------------------------------ 89 (1081)
T ss_pred ceEEEEEEc--cCCceeccCCCceeEEEecccccceee------------------------------------------
Confidence 999999998 899999999999999999865433221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
..|.+.|.|+.|+|-...|+++.=...-+|... .+...+ ......+.+.
T Consensus 90 ---------------------YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~-qK~V~K---------~kss~R~~~C 138 (1081)
T KOG1538|consen 90 ---------------------YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE-QKSVSK---------HKSSSRIICC 138 (1081)
T ss_pred ---------------------eccCCeeeEeecCchHHHhhhcchhhccccChh-hhhHHh---------hhhheeEEEe
Confidence 589999999999999999999855567788876 332221 2234678899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-----CEEEEEcC-
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----QHLLSRDY- 347 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-----~~l~~~~~- 347 (501)
+|..|| ++|+.|-.||+|.+-+-.. +.. .++-.. .|...+|.+++|+|.. ..+++.+-
T Consensus 139 sWtnDG-qylalG~~nGTIsiRNk~g-Eek---~~I~Rp-----------gg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRNKNG-EEK---VKIERP-----------GGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeecCCC-Ccc---eEEeCC-----------CCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 999999 9999999999999875332 211 122111 1235789999999963 34555543
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.++.+|.+. ++.+..-+.... +..++.+-++|.++..|+.|+.+++|--+
T Consensus 203 qTLSFy~Ls--G~~Igk~r~L~F---------------dP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 203 QTLSFYQLS--GKQIGKDRALNF---------------DPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ceeEEEEec--ceeecccccCCC---------------CchhheeccCCcEEEEccCCCceEEEeec
Confidence 677777774 554432221111 11578999999999999999999999654
No 161
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.3e-19 Score=168.02 Aligned_cols=395 Identities=15% Similarity=0.124 Sum_probs=250.9
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
....||+|+++++..+ +..|.||...++++. +.+.+|. ++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------------~~l~~~~------------a~ 59 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------------TSLEDHT------------AP 59 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhh---------------------------hhccccc------------Cc
Confidence 4567999999988765 568999999999875 6788999 88
Q ss_pred eeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc-----------Cccc---cCCCC
Q 010801 116 INRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-----------NFMN---EHNPP 180 (501)
Q Consensus 116 V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~ 180 (501)
+..+.+.|.+.. .++.+++.||.|++||...+.+.++...+.+....-........ .+.. .+...
T Consensus 60 l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~ 139 (792)
T KOG1963|consen 60 LTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSK 139 (792)
T ss_pred cceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeeccccccc
Confidence 999999865544 57778999999999999999888776654433211110000000 0000 00000
Q ss_pred C-------------Ccccccc------eecc---------CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE
Q 010801 181 S-------------FAHGYHL------EWTE---------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232 (501)
Q Consensus 181 ~-------------~~~~~~~------~~~~---------~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 232 (501)
. ..++... .... +-.+.+|.........+.+.....|.-.+++.+++|++++
T Consensus 140 q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~ 219 (792)
T KOG1963|consen 140 QSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY 219 (792)
T ss_pred ceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce
Confidence 0 0000000 0011 1134566666544333444333567777899999999999
Q ss_pred EEEE-cCCeEEEEECCC-CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 233 FVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 233 l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
+++| .||.|.+|.--. ...... ...+.=|...|.+++|+++| .+|++|+..|.+-+|.+.+++. +.+
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfL 288 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFL 288 (792)
T ss_pred EEEeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----ccc
Confidence 9999 999999996431 111111 01245588899999999999 9999999999999999988762 111
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeE-------------------------
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT------------------------- 364 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~------------------------- 364 (501)
+...++|..+.++||+.+.+.. .|+.|.+..... .....+
T Consensus 289 -------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 289 -------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred -------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEc
Confidence 2235789999999999887754 678998887532 111111
Q ss_pred -------eeccccccccccccCCCCCcc------------------eeeEEEEcCCCcEEEEEeC--------C--CeEE
Q 010801 365 -------FKIHEHLRPKLCDLYNNDSIF------------------DKFECSVSGDGLHFATGSY--------S--NLLR 409 (501)
Q Consensus 365 -------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~s~~~~~l~s~~~--------d--g~i~ 409 (501)
+.+|...+ .+.++|.+..++ .++.++.+-.|.+++|+-. | -.++
T Consensus 355 pr~~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred CCCCceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 11222211 111122222221 2345555556777776542 2 2467
Q ss_pred EEecCCCCcc----eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcc----------ccccc
Q 010801 410 IFSHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE----------LSYNL 472 (501)
Q Consensus 410 iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~----------~~~~~ 472 (501)
+|-......- ......|...+...++.+...... +++.+.++. ++|.. +.... ...-|
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~-----~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR-----CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccce-----eEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 7866543221 234457888888888877544434 799999999 99932 11111 01125
Q ss_pred CCCeEEEEEccCCCEEEEeeCCeEEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 501 (501)
..++++.+|+.||..||++.++.+.+|+.
T Consensus 509 k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 77999999999999999999999999973
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.2e-20 Score=158.08 Aligned_cols=270 Identities=12% Similarity=0.075 Sum_probs=182.6
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~ 105 (501)
...+|.+.|+++.||.++++||+|+.|..+++|+++.--. ....+++... ..|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------------~k~~KPI~~~~~~H~---- 105 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------------RKTPKPIGVMEHPHR---- 105 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------------hcCCCCceeccCccc----
Confidence 3467999999999999999999999999999999873211 0011222222 2244
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.|++|. ....++.+|..+++|.+-|+++.+.+.+...
T Consensus 106 --------SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~------------------------------ 145 (609)
T KOG4227|consen 106 --------SNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANE------------------------------ 145 (609)
T ss_pred --------cceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecc------------------------------
Confidence 789999996 6778899999999999999998775443211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
....+.|+.+..+|-.+.|++. +++.|.+||.+........+ -+.
T Consensus 146 -----------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~A 191 (609)
T KOG4227|consen 146 -----------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPA 191 (609)
T ss_pred -----------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eec
Confidence 2334589999999988888887 99999999998443233221 022
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
........+.|+|..+.+|++.+..+-+.+||++...........+.+ ++.....-+++.|+|+|..+.+
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehh
Confidence 344567889999999899999999999999999875432110011111 0111123477889999988876
Q ss_pred EcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
-.- ..-.+||+-...-++..+......- -+.+. +.+++|..|- -+++|+.+-.|++|.+..
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY-------~N~~T--~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGY-------CNIKT--IKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcc-------eeeee--eeeeeeecce-eeeccCcccceEEEecCC
Confidence 543 5566788874223333333111111 11111 1578887664 499999999999999854
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.8e-19 Score=156.14 Aligned_cols=292 Identities=16% Similarity=0.253 Sum_probs=194.6
Q ss_pred hhhhhhccCCCCCCccccccceEEEEEcc-----CCCEEEEE---ecCCcEEEEEec-CCcCCCCccchhhhhhhccccc
Q 010801 14 WKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVG---DRGGRVILFETV-GGKNTPNQHISRSELEKQMDFT 84 (501)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-----~g~~latg---~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (501)
-++.+.|+....-+.--..-+|+.++|.. +.+|||.- +..|...|.-+. +|+.
T Consensus 9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~------------------ 70 (472)
T KOG0303|consen 9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRM------------------ 70 (472)
T ss_pred hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeeccccccccc------------------
Confidence 46778888766554444455677777754 34555542 122233333222 1111
Q ss_pred cCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccc
Q 010801 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 164 (501)
..-.-.+.||+ ++|..++|+| .++..+++||.|.+|.||++..+......
T Consensus 71 ------d~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l----------- 120 (472)
T KOG0303|consen 71 ------DASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL----------- 120 (472)
T ss_pred ------CCCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc-----------
Confidence 11123467899 9999999997 57789999999999999999876543321
Q ss_pred cccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEE
Q 010801 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRIN 242 (501)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~ 242 (501)
.+++..+ .+|...|--++|+|.. +.|+++ .|++|.
T Consensus 121 ------------------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 121 ------------------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred ------------------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEE
Confidence 1233333 7999999999999964 456666 999999
Q ss_pred EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 243 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
+||+.++...+. +. |...|+++.|+.+| .+|++.+.|..|++||.++++..... ...++
T Consensus 158 iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG---------- 216 (472)
T KOG0303|consen 158 IWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG---------- 216 (472)
T ss_pred EEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC----------
Confidence 999996665554 34 99999999999999 99999999999999999998755211 11111
Q ss_pred eeecccceeEEEEeeCCCEEEEE----cCCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 323 FTEIIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~----~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
..-..+.|-.+|.++.+| ++.++-|||...-.+++. ++....+. .---|.+|.
T Consensus 217 -----~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv----------------l~PFyD~dt 275 (472)
T KOG0303|consen 217 -----AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV----------------LLPFYDPDT 275 (472)
T ss_pred -----CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCce----------------EEeeecCCC
Confidence 345566788889966666 248999999876455532 23222221 223456776
Q ss_pred cEEE-EEeCCCeEEEEecCCCCcceEEEe--cccCcccceeeccC
Q 010801 397 LHFA-TGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAA 438 (501)
Q Consensus 397 ~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~ 438 (501)
+++. +|-.|+.||-|.+.+.......+. ....+-+.+.+.|.
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 6655 566799999999987654444443 23445555555553
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-19 Score=173.96 Aligned_cols=308 Identities=12% Similarity=0.148 Sum_probs=205.1
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
....+.|+|-...+++++..-.|+|||.+.++.+ ..|..+.+. .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------NGFDNGAFP---------D 1109 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee---------------------------ccccCCCCC---------C
Confidence 5678999998889999987789999999987653 333333322 1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccc---ceeeeeccCCCcccccccccccccCccccCCCC-CCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (501)
..|+.+++....|..++++|+.||.||||+-... +...+.....-. +........+ .-+.+-. ++..+.+|.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls---~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS---DQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc---ccCccCCCCC-eeeehhhhCCeEEecCC
Confidence 7799999987777889999999999999975432 211111111000 0000000011 1111111 222233332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 265 (501)
-..|++||.+.. .+......+....|++++-+ ..|+.+++| .||.|++||.+.... .+. ....
T Consensus 1186 ---~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~-------~~R~ 1252 (1387)
T KOG1517|consen 1186 ---VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC-------VYRE 1252 (1387)
T ss_pred ---eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce-------eecc
Confidence 348999999963 23333334566677777653 357899999 999999999985443 222 2456
Q ss_pred cccc--eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 266 LTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 266 ~~~~--v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
|+.. |..+.+.+.|-..|++|+.||.|++||+|... ......+... ....+.++++..++....+|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeeeccCCCeee
Confidence 7766 99999999884569999999999999999852 1111111110 00123599999999999999
Q ss_pred EEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|+.+.|+||++. ++.+..+..+..... ..+..+.+++|+|-.-+||+|+.|..|.||.....
T Consensus 1321 sGs~q~ikIy~~~--G~~l~~~k~n~~F~~--------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLS--GEQLNIIKYNPGFMG--------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecCcceEEEEecC--hhhhcccccCccccc--------CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9988999999996 666666664443321 12223379999999999999999999999988754
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.5e-20 Score=165.06 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=177.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.-.|++......|+++|+..+.|+|||+....+ .+.+++|.
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~---------------------------hr~lkdh~----------- 121 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI---------------------------HRFLKDHQ----------- 121 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHH---------------------------hhhccCCc-----------
Confidence 3455666656668999999999999999984433 36688998
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|++|.++ -.+.+|++++..|.|.|..+.++.....++
T Consensus 122 -stvt~v~YN--~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-------------------------------------- 160 (673)
T KOG4378|consen 122 -STVTYVDYN--NTDEYIASVSDGGDIIIHGTKTKQKTTTFT-------------------------------------- 160 (673)
T ss_pred -ceeEEEEec--CCcceeEEeccCCcEEEEecccCcccccee--------------------------------------
Confidence 899999997 677899999999999999988876333221
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+....|+-+.|+|..+.+++ + ++|.|.+||+. +...+.. -...|..+.
T Consensus 161 ----------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~ 211 (673)
T KOG4378|consen 161 ----------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPC 211 (673)
T ss_pred ----------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCc
Confidence 233456678899998887765 5 99999999999 4333322 257899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
..|+|+|..+.+|++.+.|..|.+||++..... ..+.. ..+...++|+++|.+|++|+. |.
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCce
Confidence 999999998789999999999999999976544 23332 358999999999999999965 99
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
|..||++....++..+..|...+ ++++|-|..
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence 99999998788999999998876 788887654
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.9e-20 Score=169.52 Aligned_cols=274 Identities=13% Similarity=0.149 Sum_probs=191.6
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|+.++|.|....|++++.||++++|+++... ....-..+++.+|++|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~------ 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHE------ 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEeccc------
Confidence 44689999999999999999999999999999994321 11223667889999999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
++|.|++.. +++..+++|+-||+|+.|++.... ...-.+
T Consensus 345 ------gPVl~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds~-------------------------------- 383 (577)
T KOG0642|consen 345 ------GPVLCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQ-DPDDSY-------------------------------- 383 (577)
T ss_pred ------CceEEEEec--CCceEEEeeccCceeeeeccCCCC-Cccccc--------------------------------
Confidence 999999997 789999999999999999876321 000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
| ...+...+.||.+.|+.+++++....|+++ .||++++|+...... .++. .-..|
T Consensus 384 ------------d------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~----~~~e~ 439 (577)
T KOG0642|consen 384 ------------D------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFG----EPKEH 439 (577)
T ss_pred ------------C------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccC----Ccccc
Confidence 0 000111127999999999999998899999 999999999873333 1110 01122
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
+...++.+-.....+.++ +.....+++...+... ..+++.. ...+..+. ...+..+.++|.+.+.+++.
T Consensus 440 -g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s-~~~~~~s-~~~~~~~~-----~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 440 -GYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVS-DLLIFES-SASPGPRR-----YPQINKVVSHPTADITFTAH 508 (577)
T ss_pred -CCcceEeeccchhHhhhh---hcccccccchhhhhhh-heeeccc-cCCCcccc-----cCccceEEecCCCCeeEecc
Confidence 233555555433122222 3334444443332221 1133333 22222211 24688899999998888874
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.|+++|..+ +.++.....|...+ +++++.|+|.+|++|+.||.+++|.++...+
T Consensus 509 ed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 509 EDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccchhe
Confidence 59999999987 99999998888766 7999999999999999999999999976533
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-20 Score=184.77 Aligned_cols=261 Identities=16% Similarity=0.244 Sum_probs=196.4
Q ss_pred CCCCccccccceEEEEEccCCCE----EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc
Q 010801 24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (501)
Q Consensus 24 ~~~~~~~h~~~v~~v~~s~~g~~----latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (501)
.+...++-..+.+.++|.+.|.. ||.|.+||.|.+||...-.. ......+.....
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSK 114 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcc
Confidence 34555666788999999998766 89999999999999775211 113345567788
Q ss_pred CCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCC
Q 010801 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (501)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
|+ +.|..+.|++ -.+++|++|+.||.|.|||+..-+.-....
T Consensus 115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------------------- 156 (1049)
T KOG0307|consen 115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------------------- 156 (1049)
T ss_pred cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence 88 9999999985 345699999999999999998743111100
Q ss_pred CCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
...-...|.+++|+..- ..|+++ .+|.+.|||++..+..++
T Consensus 157 ----------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~--- 199 (1049)
T KOG0307|consen 157 ----------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK--- 199 (1049)
T ss_pred ----------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc---
Confidence 02346789999998754 455667 899999999996655554
Q ss_pred cCCCCCCCcc--cceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 258 MKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 258 ~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+..+. ..+..++|+|++...+++++.|. .|.+||+|...... ++++ +|...|.+
T Consensus 200 -----ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~---k~~~-------------~H~~Gils 258 (1049)
T KOG0307|consen 200 -----LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL---KILE-------------GHQRGILS 258 (1049)
T ss_pred -----cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch---hhhc-------------ccccceee
Confidence 33332 35789999999877888888754 59999998754321 3443 47889999
Q ss_pred EEEeeCC-CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEE
Q 010801 333 IKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLR 409 (501)
Q Consensus 333 ~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~ 409 (501)
+.|++.+ .+|+++ -|+.|.+|+.++ ++.+..+....... +.+.|+|... .+++.+.||.|-
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheecccee
Confidence 9999976 666665 579999999997 88888887755554 6899999765 788899999999
Q ss_pred EEecCCCC
Q 010801 410 IFSHGVGS 417 (501)
Q Consensus 410 iwd~~~~~ 417 (501)
|+.+.+..
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998764
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=158.88 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=151.9
Q ss_pred CCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+|+..|.+++|+..-+ .|++| .|.+|++||+. .+++..+ +..|...|.++.|+|..+..|++|+.|++|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s-------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSS-------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCccee-------hhhcCCceeEEEecCCCceEEEeccccceE
Confidence 57999999999987654 56777 99999999999 5555543 678999999999999988999999999999
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEc-CCcEEEEEeeCCCCceeEeecccc
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
.+.|.|...... +.|.. .+.|-.++|.|.... +++++ ||.|+-+|+|..++++.+++.|..
T Consensus 312 ~l~D~R~~~~s~---~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 312 ALKDCRDPSNSG---KEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EeeeccCccccC---ceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 999999632221 34443 467999999997654 34554 599999999998899999999999
Q ss_pred ccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccC---cccceeeccCCccccCcc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAPRARRSSL 446 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~ 446 (501)
.+ .++++++. ..+|++++.|+.|++|++...... ....|.- ...+.++.|..+ ..
T Consensus 375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a-~~--- 433 (463)
T KOG0270|consen 375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVA-FT--- 433 (463)
T ss_pred Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcc-eE---
Confidence 87 67888875 457899999999999999764331 1222221 133444445422 23
Q ss_pred ceeeeecccce-eecccc
Q 010801 447 SNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~ 463 (501)
++.|+..+. ++|+..
T Consensus 434 --la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 434 --LAFGGEKAVLRVWDIF 449 (463)
T ss_pred --EEecCccceEEEeecc
Confidence 788888887 999443
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3.9e-19 Score=147.91 Aligned_cols=248 Identities=14% Similarity=0.140 Sum_probs=173.8
Q ss_pred CCcccceEEEEecCCCC-EEEEE-c---C----CeEEEEECCCCCeeeeeeecC-CCCCC-CcccceEEEEEecCCCcEE
Q 010801 215 HAHDFNINSISNNSDCE-TFVSA-D---D----LRINLWNLEISDQCFNIVDMK-PSNMD-DLTEVITSAEFHPIYCNLL 283 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~-~l~~~-~---d----~~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~v~~v~~~p~~~~~l 283 (501)
..|.+.|+.++-+|-.+ .|+++ . | -.+.||.+...........+. ...+. .+-+.|.|+.|.|++ ..+
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~kl 138 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DKL 138 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Cee
Confidence 56778899999888544 45554 3 1 257799887432221000000 01122 344589999999998 777
Q ss_pred EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEEcCCcEEEEEeeCCCCc
Q 010801 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTP 361 (501)
Q Consensus 284 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~~~~i~lwd~~~~~~~ 361 (501)
++-. |..|.+|++..+.........-.. .+|....++-+|+| ||..+++.+++++..||+++..+.
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s-----------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSES-----------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred EEec-cCceEEEEcccCcchheeeccccc-----------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 7655 889999999887643211111111 12456788889998 789999999999999999984444
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCc
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 440 (501)
...-..|...+ ..+.|.|+.+ +|++++.||.|+|||....+..++++.+|..+++++.|.|.-
T Consensus 207 ~sI~dAHgq~v---------------rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h- 270 (370)
T KOG1007|consen 207 NSIEDAHGQRV---------------RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH- 270 (370)
T ss_pred cchhhhhccee---------------eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc-
Confidence 44445666554 7899999865 578999999999999998888899999999999999999974
Q ss_pred cccCccceeeeecccce-eec---ccc----------------------------CCcccccccCCCeEEEEEccCCCEE
Q 010801 441 ARRSSLSNLTRGLYRQA-HEN---SSS----------------------------GHHELSYNLSSKLLHLAWHPTTNLI 488 (501)
Q Consensus 441 ~~~~~~~~l~~~~~~~~-~iw---~~~----------------------------~~~~~~~~~~~~i~~~~~sp~~~~l 488 (501)
..+ +.+|+.|.. .+| ... +.+....+|+..|.+++||....++
T Consensus 271 dqL-----iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 271 DQL-----ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ceE-----EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 344 678888877 777 111 1112345789999999999999886
Q ss_pred E-EeeCCeE
Q 010801 489 A-CANGNSL 496 (501)
Q Consensus 489 a-~~~~~~~ 496 (501)
+ +-+.||-
T Consensus 346 FASLSYDGR 354 (370)
T KOG1007|consen 346 FASLSYDGR 354 (370)
T ss_pred EEEeccCce
Confidence 5 4456663
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.8e-18 Score=138.05 Aligned_cols=262 Identities=15% Similarity=0.158 Sum_probs=179.2
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+-+++|.+++|+.|..+|.|.++.+..-... ....+.-..+..+++|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd----------- 62 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD----------- 62 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence 44667789999999999999999999998743221 01112223445568999
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
++|+.++|. +.+|++|+ ||.|+-|..+.....
T Consensus 63 -gpiy~~~f~----d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------ 94 (325)
T KOG0649|consen 63 -GPIYYLAFH----DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------ 94 (325)
T ss_pred -CCeeeeeee----hhheeecc-CceEEEeeehhhhhh------------------------------------------
Confidence 999999995 34666665 599999987654321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.+.-++|.+....... ...--.|+++...|..+-++.+ .|+.++-||++ .++..+. +.+|+..|.
T Consensus 95 ~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH 160 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH 160 (325)
T ss_pred ccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence 1222344444321110 1123467888888866656555 99999999999 5555554 799999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEcCCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
++.-.... ..+++|++||++|+||.++++.. ++++....+. .++.| ..+|.+++.+ ..+|++|....+
T Consensus 161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~~----~lRp~~g~wigala~~--edWlvCGgGp~l 229 (325)
T KOG0649|consen 161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNPN----LLRPDWGKWIGALAVN--EDWLVCGGGPKL 229 (325)
T ss_pred eeeecccC-cceeecCCCccEEEEecccccee----EEeccccChh----hcCcccCceeEEEecc--CceEEecCCCce
Confidence 99985554 67999999999999999998654 4444311111 11112 2456666654 679999988899
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+|.++. .++...+...... ..+.|.. ..+++++..+.|.-|.+.
T Consensus 230 slwhLrs-se~t~vfpipa~v----------------~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRS-SESTCVFPIPARV----------------HLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccC-CCceEEEecccce----------------eEeeeec--ceEEEeccccceeeeeec
Confidence 9999996 7777776644332 4577753 467788887889989875
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=147.10 Aligned_cols=199 Identities=16% Similarity=0.256 Sum_probs=148.1
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..++.|+ +.|.+|++|+.||.|.+||+.+....+++
T Consensus 26 a~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T~~iar~l------------------------------------------ 61 (405)
T KOG1273|consen 26 AECCQFS--RWGDYLAVGCANGRVVIYDFDTFRIARML------------------------------------------ 61 (405)
T ss_pred cceEEec--cCcceeeeeccCCcEEEEEccccchhhhh------------------------------------------
Confidence 6889998 78999999999999999999887643332
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.+|..+|.+++|++||+.|+++ .|..|.+||+..+. +++.+ ....+|+.+.
T Consensus 62 -------------------saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~ri--------rf~spv~~~q 113 (405)
T KOG1273|consen 62 -------------------SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRI--------RFDSPVWGAQ 113 (405)
T ss_pred -------------------hccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEE--------EccCccceee
Confidence 7899999999999999999999 99999999999554 44432 2457899999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 353 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lw 353 (501)
|+|...+..++.-.+..-.+-++..+.. ..+.. . .... ....-.+..|.+.|++|++|+. |.+.++
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~-d-~d~d------ln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK-D-DDGD------LNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCce-----eeccC-C-Cccc------cccccccccccCCCCEEEEecCcceEEEE
Confidence 9998755555554454455555544321 11211 0 0000 0112233468899999999976 999999
Q ss_pred EeeCCCCceeEeeccc-cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 354 DIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|..+ .+++..++... .. +..+.++..|++|+..+.|..||.|+++.
T Consensus 181 ~a~t-~e~vas~rits~~~---------------IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 181 DAET-LECVASFRITSVQA---------------IKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ecch-heeeeeeeechhee---------------eeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 9987 77777776544 22 26789999999999999999999999873
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2e-18 Score=143.70 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=174.9
Q ss_pred cccceEEEEEcc-CCCEEEEEecC-------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCC
Q 010801 31 DVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHE 101 (501)
Q Consensus 31 h~~~v~~v~~s~-~g~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 101 (501)
|.+.|+.++-+| +.+.|+|+..+ -.+.||.+...... +.....+.+..+. .+-
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEAV 123 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHHh
Confidence 678999999999 45666665442 24678987754220 0000111111121 122
Q ss_pred cchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
+.|.||.|. |++..+++-. |..|.+|+++.+..+.. .....
T Consensus 124 ------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~va-ev~ss----------------------- 164 (370)
T KOG1007|consen 124 ------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVA-EVLSS----------------------- 164 (370)
T ss_pred ------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchhe-eeccc-----------------------
Confidence 689999998 6788887776 78899999987653210 00000
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEEcCCeEEEEECCCCCeeeeeeecC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
...++....++-+|+| +|+.+++..|+++..||+++..+...+
T Consensus 165 -------------------------------~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 165 -------------------------------ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred -------------------------------ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch----
Confidence 0034566778889988 788888889999999999966655543
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
-..|...|+.+.|+|+...+|++|+.||.|++||.|..+.. +.+ +.+|..++.++.|+|.-
T Consensus 210 ---~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-----v~e-----------l~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 210 ---EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-----VQE-----------LPGHSHWVWAVRFNPEH 270 (370)
T ss_pred ---hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-----ccc-----------cCCCceEEEEEEecCcc
Confidence 46788999999999998568999999999999999875432 111 35688999999999964
Q ss_pred -CEEEEE-cCCcEEEEEeeCCCC----------------------------ceeEeeccccccccccccCCCCCcceeeE
Q 010801 340 -QHLLSR-DYMNLKLWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 340 -~~l~~~-~~~~i~lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
++|++| +|..|.+|....-.. .+.++..|+ +++ ++
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE------------DSV---Y~ 335 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE------------DSV---YA 335 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc------------cce---EE
Confidence 455565 578999997543110 111222222 233 79
Q ss_pred EEEcCCCcE-EEEEeCCCeEEEEecC
Q 010801 390 CSVSGDGLH-FATGSYSNLLRIFSHG 414 (501)
Q Consensus 390 ~~~s~~~~~-l~s~~~dg~i~iwd~~ 414 (501)
++||.-..+ +|+-++||++.|=.+.
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCC
Confidence 999986655 5678999999987665
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=8.6e-20 Score=172.26 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=191.0
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.+.|..+|+|+.|...|.++++|+.|..++||..+++.++ ...+||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------------As~rGhs------ 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------------ASCRGHS------ 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh---------------------------ccCCCCc------
Confidence 4569999999999999999999999999999998887664 7899999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|+.++.+ .+..++++++.|..|++|.+.++..+.++
T Consensus 233 ------~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvL---------------------------------- 270 (1113)
T KOG0644|consen 233 ------GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVL---------------------------------- 270 (1113)
T ss_pred ------cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHH----------------------------------
Confidence 889999997 67788999999999999999988755443
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|++.|++++|+|-. .++.||++++||.+ -... ++...+..+. ..
T Consensus 271 ---------------------------rghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~--~y~prp~~~~-~~ 316 (1113)
T KOG0644|consen 271 ---------------------------RGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPR--IYVPRPLKFT-EK 316 (1113)
T ss_pred ---------------------------hccccceeeeccCccc---cCCCCCceEecccc-cccc--ccCCCCCCcc-cc
Confidence 7999999999999965 33499999999988 1111 1111121222 22
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR- 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~- 345 (501)
.-+.++.|...+ .-+++++.|+.-..|.+..-. + +...+.-+..+.|- .+.+++
T Consensus 317 ~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~--------~---------------~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 317 DLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA--------W---------------RSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred cceeeeeccccc-cccccccCCcccccchhhHhh--------h---------------hccceEEEeccccccccceeee
Confidence 456677788887 889999999988887664321 1 01122222233222 344444
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.+-.+.+|++.+ +...+.+.+|...+ ..+.++|- .+...+++.||...|||+-.|..+.....
T Consensus 373 ~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 373 NDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred eeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 457899999986 88888888888876 57899995 45556899999999999998866655554
Q ss_pred cccCcccceeecc
Q 010801 425 AGKNENRKPILQA 437 (501)
Q Consensus 425 ~~~~~v~~~~~~~ 437 (501)
+| ..+..-.|++
T Consensus 437 gh-~kl~d~kFSq 448 (1113)
T KOG0644|consen 437 GH-GKLVDGKFSQ 448 (1113)
T ss_pred cc-ceeeccccCC
Confidence 43 3333445554
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3e-18 Score=148.67 Aligned_cols=218 Identities=13% Similarity=0.138 Sum_probs=162.3
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+|+++|..++|+| +...||+|++|.+|.||++..+... .+-.++...+.||.
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~------- 131 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ------- 131 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-------
Confidence 5999999999999 6678999999999999998865442 23345778899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.-|+|+| .-.+.|++++.|.+|.+|++.+++....
T Consensus 132 -----rrVg~V~wHP-tA~NVLlsag~Dn~v~iWnv~tgeali~------------------------------------ 169 (472)
T KOG0303|consen 132 -----RRVGLVQWHP-TAPNVLLSAGSDNTVSIWNVGTGEALIT------------------------------------ 169 (472)
T ss_pred -----eeEEEEeecc-cchhhHhhccCCceEEEEeccCCceeee------------------------------------
Confidence 8999999997 3457899999999999999999874432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|...|++++|+.||.+|++. .|..|+|||.+ .+..+.. -.+|.
T Consensus 170 --------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~he 215 (472)
T KOG0303|consen 170 --------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVAHE 215 (472)
T ss_pred --------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------ccccc
Confidence 2489999999999999999998 99999999999 4444432 23454
Q ss_pred c-ceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 268 E-VITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 268 ~-~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+ .-..+.|-.++ .++-+|.. +..+-+||..+-+... ....++. .+.|.---|.||...+.
T Consensus 216 G~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 216 GAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSIVY 279 (472)
T ss_pred CCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCEEE
Confidence 3 34556688888 75555533 7889999987643321 0122222 35677777888888776
Q ss_pred E-E-cCCcEEEEEeeCCCCceeEee
Q 010801 344 S-R-DYMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 344 ~-~-~~~~i~lwd~~~~~~~~~~~~ 366 (501)
. | +|+.||-|.+..+...+..+.
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEec
Confidence 4 4 579999999975333344443
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=3.2e-16 Score=152.54 Aligned_cols=325 Identities=21% Similarity=0.348 Sum_probs=223.4
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|...+.++.|.+.+..++.++.|+.+.+|+...+.. ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 356899999999999999999999999999999886631 2244444330
Q ss_pred cccccccceeEEEEeecCCCC-EEEEeeC-CCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~-~l~s~s~-d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..+..+.+. .+++. .++..+. |+.+++|+... .......
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------- 151 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL------------------------------- 151 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE-------------------------------
Confidence 256777774 46776 4555444 99999999987 3322211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..|...|..++|+|++..++++ . ++.+++|++.. ......
T Consensus 152 ------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 193 (466)
T COG2319 152 ------------------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLST------- 193 (466)
T ss_pred ------------------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEe-------
Confidence 5888899999999999988887 5 99999999994 333332
Q ss_pred CCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|...|.+++|+|++ . .+++++.|+.|++||...+..... .+ .+|.... ...|+|++.+
T Consensus 194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~-------------~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TL-------------SGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ec-------------CCCCcce-eEeECCCCCE
Confidence 55689999999999998 6 555558999999998875433210 12 2234443 3389999988
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
+++++ ++.+++|++......+..+.+|...+ .++.|.|++..+++++.|+.+.+|+..+.....
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 87664 59999999986333244444454433 678999988888889999999999888774442
Q ss_pred EEE-ecccCcccceeeccCCccccCccceeeee-cccce-eeccccCCccc-ccccCCCeEEEEEccCCCEEEE-e-eCC
Q 010801 421 ITV-EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHHEL-SYNLSSKLLHLAWHPTTNLIAC-A-NGN 494 (501)
Q Consensus 421 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~-~-~~~ 494 (501)
... ..|...+..+.+ . .++.. ++.+ ..++. .+|........ .......+..+.+++ ...+.. + ...
T Consensus 321 ~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 321 SLTLKGHEGPVSSLSF-S-PDGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred EeeecccCCceEEEEE-C-CCCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCC
Confidence 222 477777888888 5 23222 3444 56666 66855543311 112222288999999 633333 2 355
Q ss_pred eEEEEe
Q 010801 495 SLFFHY 500 (501)
Q Consensus 495 ~~~i~~ 500 (501)
.+.+|.
T Consensus 393 ~~~~~~ 398 (466)
T COG2319 393 TVRLWD 398 (466)
T ss_pred ceEEEe
Confidence 677775
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=4.2e-18 Score=140.03 Aligned_cols=300 Identities=13% Similarity=0.144 Sum_probs=190.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (501)
.|.+.|+++.|..+++ |.+|..-|.|.+|++.+.... ..+++ |.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence 5788999999998776 888999999999999976542 34553 34
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCc-ccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|+.+.-. |+ ..+.+-+.|+.+.+|++..+..+.+....... .+|-++-.............++..
T Consensus 57 -----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg---- 124 (323)
T KOG0322|consen 57 -----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG---- 124 (323)
T ss_pred -----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc----
Confidence 668887765 43 67889999999999999886655433211100 000000000000000000000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCC--C
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--S 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~ 261 (501)
.....+-|.....+.+....-..+..+.+.+..+. .++. ++++| .+|.+.+||+..+...+..-...+ .
T Consensus 125 -----sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 125 -----SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred -----cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 00111111111100000000013445667776652 2343 34567 999999999996543332110000 1
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc--ccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
....|..+|.++.+.+.- ..=++|+.+..+..|++.... +.......++ ...+..+..-||+
T Consensus 200 ~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk---------------npGv~gvrIRpD~ 263 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK---------------NPGVSGVRIRPDG 263 (323)
T ss_pred chhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEec---------------CCCccceEEccCC
Confidence 245688999999999875 666778888889999886542 2111111222 2468999999999
Q ss_pred CEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+.+|+++ |+.||||..++ .+++..++.|...+ .+++|+|+..++|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 9999875 79999999997 99999999999766 79999999999999999999999986
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.7e-18 Score=156.55 Aligned_cols=252 Identities=13% Similarity=0.164 Sum_probs=182.9
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+...++||+ +.|.+|... +.|.+|++|+.||+|+||.+.+++++....+
T Consensus 391 ~~~lvyrGHt------------g~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------------- 440 (733)
T KOG0650|consen 391 RCALVYRGHT------------GLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQF---------------- 440 (733)
T ss_pred eeeeeEeccC------------CeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEee----------------
Confidence 3456789999 999999996 7899999999999999999999987765422
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC--EEEEEcCCeEEEEECCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEIS 249 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~d~~i~iwd~~~~ 249 (501)
.+.|.|++|+|.+. .|+++.+..+.|-+..-+
T Consensus 441 ----------------------------------------------d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 441 ----------------------------------------------DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred ----------------------------------------------cceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 23566666666443 333332222333332211
Q ss_pred Cee--------ee-------------eeecC---C-----CCCCCcccceEEEEEecCCCcEEEEEeCC---CeEEEEEc
Q 010801 250 DQC--------FN-------------IVDMK---P-----SNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDM 297 (501)
Q Consensus 250 ~~~--------~~-------------~~~~~---~-----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~~wd~ 297 (501)
.+. +. ++.-. . ...-.|...|..+.|+..| .+|++...+ ..|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEec
Confidence 000 00 00000 0 0012467889999999999 999987664 56888888
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
..+... .-| ..-.+.+.++.|+|...+|++++...|++||+.. ...+..+......+
T Consensus 554 SK~~sQ----~PF-------------~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi----- 610 (733)
T KOG0650|consen 554 SKRKSQ----SPF-------------RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI----- 610 (733)
T ss_pred cccccc----Cch-------------hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee-----
Confidence 765432 111 1124679999999999999999989999999975 66666655444444
Q ss_pred cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce
Q 010801 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..++.+|.|.-|+.|+.|+.+..+|++-.....+++.-|...++.+++.+. ++.+++|+.|+.
T Consensus 611 ----------S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt 673 (733)
T KOG0650|consen 611 ----------SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT 673 (733)
T ss_pred ----------eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence 689999999999999999999999999887888999999999999999984 445999999999
Q ss_pred -eec
Q 010801 458 -HEN 460 (501)
Q Consensus 458 -~iw 460 (501)
.++
T Consensus 674 v~Vf 677 (733)
T KOG0650|consen 674 VIVF 677 (733)
T ss_pred EEEE
Confidence 776
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=7.4e-17 Score=158.88 Aligned_cols=293 Identities=16% Similarity=0.216 Sum_probs=188.0
Q ss_pred ccccchhhhhhhccCCCCCCccccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccC
Q 010801 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (501)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (501)
.+++++|+....+. ....+|...|..++.++.. .++++|+.||+|+||+...-... +
T Consensus 1028 ~~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~----- 1085 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G----- 1085 (1431)
T ss_pred CCCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-----
Confidence 46778899987655 3456789999999998865 99999999999999998743321 0
Q ss_pred CCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccc
Q 010801 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
..++...++.--. ..+.++..+ ++++.+|.++.||.|++.+++.....+..
T Consensus 1086 --~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~------------- 1136 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRV------------- 1136 (1431)
T ss_pred --ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccce-------------
Confidence 1222223332222 678899888 78899999999999999998763211111
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEee-cCCcccceEEEEecC-CCC-EEEEE-cCCeEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNS-DCE-TFVSA-DDLRIN 242 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~-~~~-~l~~~-~d~~i~ 242 (501)
..+.+.. ......-|..-+|.. .+. .++.+ ..+.|.
T Consensus 1137 ----------------------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1137 ----------------------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred ----------------------------------------eeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 0011100 011222233334422 233 66677 899999
Q ss_pred EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 243 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.||+++....... +.....+.|++++.+|.+ +.+++|+..|.+.+||+|-+... ..|..
T Consensus 1177 ~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~---------- 1235 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH---------- 1235 (1431)
T ss_pred EecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC----------
Confidence 9999954433321 234456789999999998 99999999999999999987544 33332
Q ss_pred eeecccceeEEEEeeC---CCEEEEE-c-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCC-----CcceeeEEE
Q 010801 323 FTEIIASISDIKFAND---GQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND-----SIFDKFECS 391 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~---~~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 391 (501)
.+..+++.+..+|- ....+++ . . +.|.+|++.+ +.....+..... .+.+......+ ........+
T Consensus 1236 --P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1236 --PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDG-APILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred --cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCC-CcchhhhcccccCCCCCcccceeee
Confidence 12357777777763 3455544 3 3 8999999986 555555544311 11111111111 111112344
Q ss_pred EcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 392 VSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 392 ~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+...+.++.+|+.|..|+.||....
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCc
Confidence 5555678999999999999998765
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=7.9e-18 Score=151.63 Aligned_cols=271 Identities=14% Similarity=0.208 Sum_probs=187.3
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
..++.++.||.+.|.+-... +.....+|. +.|.+-+|+
T Consensus 76 d~~~i~s~DGkf~il~k~~r----------------------------VE~sv~AH~------------~A~~~gRW~-- 113 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR----------------------------VERSISAHA------------AAISSGRWS-- 113 (737)
T ss_pred ceEEEEcCCceEEEecccch----------------------------hhhhhhhhh------------hhhhhcccC--
Confidence 45777788999888874322 335678898 999999998
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
++|.-|++++.||.|++|.-.+ .+..+
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsG-MLRSt---------------------------------------------------- 140 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSG-MLRST---------------------------------------------------- 140 (737)
T ss_pred CCCceeeeecCCceEEEEeccc-hHHHH----------------------------------------------------
Confidence 8999999999999999998543 21111
Q ss_pred eeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+......|.|++|.|+.+.++.+..+.+.|=-+......++ ...|.+-|.++.|++.. ++++
T Consensus 141 ---------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~ 202 (737)
T KOG1524|consen 141 ---------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIA 202 (737)
T ss_pred ---------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-ccee
Confidence 13446789999999999988888777777766664444443 67899999999999998 9999
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeE
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~ 364 (501)
+|++|-..++||-.... .|.. ..|..+|++++|+|+ +.++.++.+++|+=..+
T Consensus 203 sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~-------- 255 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR-------- 255 (737)
T ss_pred ecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCC--------
Confidence 99999999999987653 2332 235679999999999 77777776776621111
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 444 (501)
.+. + ..++||+||..+++|...|.+.+=-+-..+.....++....+-..+
T Consensus 256 ----~GS------------i---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I----------- 305 (737)
T KOG1524|consen 256 ----VGS------------I---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSI----------- 305 (737)
T ss_pred ----ccc------------e---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceE-----------
Confidence 111 1 6899999999999999999886644433322211111111110011
Q ss_pred ccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 445 ~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+-+........+++.+.|...+ -.-.+|++++...+|+|+
T Consensus 306 -------------~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys 346 (737)
T KOG1524|consen 306 -------------TVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS 346 (737)
T ss_pred -------------EeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence 11111122334556666665555 445678888888888886
No 180
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.5e-18 Score=157.79 Aligned_cols=262 Identities=16% Similarity=0.220 Sum_probs=178.1
Q ss_pred EccCCCEEEE--EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 40 FDKTGDYLAV--GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 40 ~s~~g~~lat--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
|..+..++|+ ++..|.|-||++...-. .|+...-..+++ ..|+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr---------------------LPDgv~p~l~Ng--------------t~vt 631 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR---------------------LPDGVMPGLFNG--------------TLVT 631 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC---------------------CCcccccccccC--------------ceee
Confidence 4445566665 35578999999874322 234433344444 4599
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|.| -|..+|++++.||.|++|.+..+......
T Consensus 632 Dl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~-------------------------------------------- 666 (1012)
T KOG1445|consen 632 DLHWDP-FDDERLAVATDDGQINLWRLTANGLPENE-------------------------------------------- 666 (1012)
T ss_pred ecccCC-CChHHeeecccCceEEEEEeccCCCCccc--------------------------------------------
Confidence 999987 47789999999999999999865432211
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
..+...+ ..|...|+++.|+|- ...|+++ .|-+|++||+....... .+.+|++.|..++|
T Consensus 667 ---------~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 667 ---------MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLVGHTDQIFGIAW 728 (1012)
T ss_pred ---------CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eeccCcCceeEEEE
Confidence 1122223 789999999999994 4567777 99999999999554433 37899999999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-----CCcE
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----YMNL 350 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-----~~~i 350 (501)
+|+| +.+++.+.||+|++|..+.++. .+.++ +..- ...-..+.|.-||+++++.+ ..+|
T Consensus 729 SpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg-~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 729 SPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEG-KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred CCCC-cceeeeecCceEEEeCCCCCCC-----ccccC-CCCc---------cCcceeEEEEecCcEEEEecccccchhhh
Confidence 9999 9999999999999999988754 23333 1100 12345678888999887542 2789
Q ss_pred EEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 351 KLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 351 ~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
.+||.++- ..++.+..-..... . .--.+.+|. -++++|-.|..|++|.+-..+.....+..|..
T Consensus 793 ~~Y~Aq~l~~~pl~t~~lDvaps-~-------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~s 858 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLYTQVLDVAPS-P-------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMS 858 (1012)
T ss_pred hhhhhhhccCCcceeeeecccCc-c-------------ccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccC
Confidence 99998752 23443332111111 0 112345554 45678889999999998765554445544443
Q ss_pred c
Q 010801 429 E 429 (501)
Q Consensus 429 ~ 429 (501)
+
T Consensus 859 p 859 (1012)
T KOG1445|consen 859 P 859 (1012)
T ss_pred C
Confidence 3
No 181
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=9.3e-18 Score=148.37 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=179.1
Q ss_pred CCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
.-+..+|++++|+|..+ ++++| ..|.|=+||+.+.++...-+ .-+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 46788999999999654 67778 89999999996222211100 0257799999999999998789999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|++-|+..+... .++.. . .-...+..+.|+.+..-++.+++ |...+||+++++.....+..|..
T Consensus 259 iR~~D~~~~i~e----~v~s~-~----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 259 IRLQDFEGNISE----EVLSL-D----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeeeeecchhhH----HHhhc-C----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 999999876322 11111 0 01346788888888877777766 99999999997777777777877
Q ss_pred ccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCcc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL 446 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~ 446 (501)
.+ ++++++|- ..+|||+|.|++.+|||+...... ....-.|...|.+..|+|. .|.
T Consensus 324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~gt---- 383 (498)
T KOG4328|consen 324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-GGT---- 383 (498)
T ss_pred cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-CCc----
Confidence 55 78999996 457899999999999999764322 2456689999999999995 333
Q ss_pred ceeeeecccce-eecccc-----CCcccccccC----C--CeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 447 SNLTRGLYRQA-HENSSS-----GHHELSYNLS----S--KLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~-----~~~~~~~~~~----~--~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
|++.+.|.. ++|+.. ........|. . ....-+|.|+.+++++|. .+.|-||+
T Consensus 384 --l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 384 --LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred --eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 688888888 999653 1111111221 2 223568999999999997 44466654
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.9e-17 Score=142.39 Aligned_cols=268 Identities=16% Similarity=0.265 Sum_probs=175.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|...|+++.|+|+|+.||+|+.+|.|.+|....-... ..+. + .....+.+...+.+.+|.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~--~~d~--e-------~~~~ke~w~v~k~lr~h~------- 123 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF--DADT--E-------ADLNKEKWVVKKVLRGHR------- 123 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc--cccc--h-------hhhCccceEEEEEecccc-------
Confidence 369999999999999999999999999999986631110 0000 0 112244678888999999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|..++|+ +++.++++++.|..+++||+..|+.....
T Consensus 124 -----~diydL~Ws--~d~~~l~s~s~dns~~l~Dv~~G~l~~~~----------------------------------- 161 (434)
T KOG1009|consen 124 -----DDIYDLAWS--PDSNFLVSGSVDNSVRLWDVHAGQLLAIL----------------------------------- 161 (434)
T ss_pred -----cchhhhhcc--CCCceeeeeeccceEEEEEeccceeEeec-----------------------------------
Confidence 889999998 89999999999999999999999866653
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeee--cCCCCC--
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNM-- 263 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~-- 263 (501)
..|...+..++|.|.++++++= .|...+.+.+...+ ....+. ..+...
T Consensus 162 --------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 162 --------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHGLDIMPAKAFN 214 (434)
T ss_pred --------------------------cccccccceeecchhhhhhhhhccCcccceeeeeeee-eeeeeeeeEeeecccC
Confidence 6788888888898888888874 66656665555222 111111 000000
Q ss_pred CC--------c----ccceEEEEEecCCCcEEEEEeC----CCeE-----EEEEccCCcccccccceeecccccCCCcce
Q 010801 264 DD--------L----TEVITSAEFHPIYCNLLAYSSS----RGFV-----RLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 264 ~~--------~----~~~v~~v~~~p~~~~~l~~~~~----dg~i-----~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.+ | ....+.++|+|+| .+|++.+. .+.+ ++|+-. ...+....+
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~l------------ 278 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRK---DLKRPAARL------------ 278 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccc---cccCceeec------------
Confidence 00 1 1234677899999 88887543 2222 223221 111111111
Q ss_pred eeecccceeEEEEee------------------CCCEEEEEcCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCC
Q 010801 323 FTEIIASISDIKFAN------------------DGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDS 383 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp------------------~~~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 383 (501)
+....+...+.|+| -+-.+|.++.+.|++||.++ ..++.... .|-..+
T Consensus 279 -p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~~~v~nihy~~i----------- 345 (434)
T KOG1009|consen 279 -PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPLAVVDNIHYSAI----------- 345 (434)
T ss_pred -CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccceEEEeeeeeeee-----------
Confidence 11122334444433 23345566779999999986 55655543 344443
Q ss_pred cceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 384 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
++++|++||..|+..|.||...+-.++..
T Consensus 346 ----TDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 346 ----TDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ----cceeecCCCcEEEEeccCCceEEEEEcch
Confidence 79999999999999999998877776654
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=150.26 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=156.9
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
.|+.+ .||.+.|.+-. ++.-+ .+..|.+.+.+-.|+|+| .-|+++++||.|++|.-... +. .+.
T Consensus 77 ~~~i~s~DGkf~il~k~--~rVE~-------sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-LR----Stl 141 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS--ARVER-------SISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-LR----STV 141 (737)
T ss_pred eEEEEcCCceEEEeccc--chhhh-------hhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-HH----HHH
Confidence 45555 89998887655 23222 368899999999999999 99999999999999985432 11 111
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEE
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
. ....+|.+++|.|+.+-++.+..+.+.+=.+.. ...+-.++.|++.+ .++
T Consensus 142 ~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~~ 192 (737)
T KOG1524|consen 142 V-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LSL 192 (737)
T ss_pred h-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EEe
Confidence 1 113689999999999888777668888888875 55666788999876 799
Q ss_pred EEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCccccc
Q 010801 391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 470 (501)
Q Consensus 391 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~ 470 (501)
.|++.+.++++|++|-..+|||-. | .....-.+|..++++++|.|. +. ++.++..-. ....
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd---~~-----~~v~S~nt~---------R~~~ 253 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE---KD-----YLLWSYNTA---------RFSS 253 (737)
T ss_pred ecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc---cc-----eeeeeeeee---------eecC
Confidence 999999999999999999999976 3 344777899999999999995 22 455544322 1222
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 471 NLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 471 ~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
...+.|..++|||||..+++|+..|..++
T Consensus 254 p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCccceEEEEEcCCCceeeccccCceEEE
Confidence 34568999999999999999998876554
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=3.1e-17 Score=138.86 Aligned_cols=294 Identities=15% Similarity=0.197 Sum_probs=210.4
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
-.....|+ |||..|++-+.|..+++|++...-...-.. ....+..
T Consensus 51 f~kgckWS--PDGSciL~~sedn~l~~~nlP~dlys~~~~-----------------~~~~~~~---------------- 95 (406)
T KOG2919|consen 51 FLKGCKWS--PDGSCILSLSEDNCLNCWNLPFDLYSKKAD-----------------GPLNFSK---------------- 95 (406)
T ss_pred hhccceeC--CCCceEEeecccCeeeEEecChhhcccCCC-----------------Ccccccc----------------
Confidence 34567898 899999999999999999986432111000 0000000
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEec-------CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-------~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
...++ ......|...+|- |+..+++++ .+.-|++||.-+++ ....+ ....|
T Consensus 96 ------------~~~~r---~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-lraSy-----~~ydh 154 (406)
T KOG2919|consen 96 ------------HLSYR---YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-LRASY-----RAYDH 154 (406)
T ss_pred ------------ceeEE---eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-cccch-----hhhhh
Confidence 00001 2334455655553 677788888 99999999988443 32221 12223
Q ss_pred cc---ceEEEEEecCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCE
Q 010801 267 TE---VITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (501)
Q Consensus 267 ~~---~v~~v~~~p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~ 341 (501)
.. ...+++|+||| ..|+. +..+.|+++|+ |.++.+........+ -.+..+-|.+++|+|- .+.
T Consensus 155 ~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~ 222 (406)
T KOG2919|consen 155 QDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKT 222 (406)
T ss_pred HHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcc
Confidence 32 34689999999 77765 56789999999 666544322122221 0123567899999995 458
Q ss_pred EEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcc
Q 010801 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~ 419 (501)
++.|+. .++-||.-.. ..++..+-+|.+.+ +.++|.++|+.|.+|.. |-.|..||+...+..
T Consensus 223 ~a~gsY~q~~giy~~~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 223 LAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeecccceeeeEecCC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 888886 7777887764 88999999999877 89999999999999876 789999999988778
Q ss_pred eEEEecccC-cccceeeccCCccccCccceeeeecccce-eecccc---CCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 420 GITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 420 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~---~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
+..+..|.. ....+.|-...++.+ |++|+.+|. .+|+.. ........++..++.++++|.=.++|++++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 888999988 666777877778888 999999999 999554 3445566788899999999999999999877
Q ss_pred eEE
Q 010801 495 SLF 497 (501)
Q Consensus 495 ~~~ 497 (501)
.+|
T Consensus 362 r~f 364 (406)
T KOG2919|consen 362 RIF 364 (406)
T ss_pred eee
Confidence 555
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.3e-16 Score=152.24 Aligned_cols=284 Identities=17% Similarity=0.208 Sum_probs=182.7
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCce
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (501)
.|.+++. ..+...+.-...|+|+.|+| +..+||.|+.+|.|.+||+..+...+ ..
T Consensus 226 vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s 281 (555)
T KOG1587|consen 226 VWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PS 281 (555)
T ss_pred EEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------Cc
Confidence 4665554 12333344578999999999 66888999999999999998775420 01
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee-eeccCCCcccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (501)
........|. .+++.+.|..++.+.-|++++.||.|..|+++.-.... .......
T Consensus 282 ~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~------------ 337 (555)
T KOG1587|consen 282 GLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK------------ 337 (555)
T ss_pred ccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc------------
Confidence 1112233465 89999999865555679999999999999776433211 0000000
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~ 248 (501)
...... ..-...+++++|.+ +...++.| ++|.|.--+...
T Consensus 338 ------------------------------------~~~~~~--~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 338 ------------------------------------KHKGQQ--SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ------------------------------------cccccc--cccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 000000 12244678899976 45567888 999988744331
Q ss_pred CCeeeeeeecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcccccccceeecccccCCCcceeeec
Q 010801 249 SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
........ .+. .....|.++|+++.++|-+.+.|++++ |.+++||... ..... ..+.. +
T Consensus 380 ~~~~~~~~-~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl----~~~~~-------------~ 440 (555)
T KOG1587|consen 380 YTPAPEVS-YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL----LSLDS-------------S 440 (555)
T ss_pred Cccccccc-ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc----hhhhh-------------c
Confidence 11111000 011 135668899999999999855566655 9999999876 32221 22222 2
Q ss_pred ccceeEEEEeeCCC-EEEEEc-CCcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 327 IASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 327 ~~~i~~~~~sp~~~-~l~~~~-~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
...+.+++|||-.. .+++++ +|.|.+||+... ..++.+........ +.+.|+++|+.|++|.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGD 505 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEec
Confidence 45699999999754 455565 599999999741 23444443332221 5789999999999999
Q ss_pred CCCeEEEEecCCC
Q 010801 404 YSNLLRIFSHGVG 416 (501)
Q Consensus 404 ~dg~i~iwd~~~~ 416 (501)
..|.+++|++...
T Consensus 506 ~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 506 ANGTTHILKLSES 518 (555)
T ss_pred CCCcEEEEEcCch
Confidence 9999999999743
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.7e-15 Score=130.87 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=166.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++.+.|+.+...|..|+.|| -++|+.+..+.. +..-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-----------------------------~~~~~---------- 44 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-----------------------------FSKDT---------- 44 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-----------------------------hcccC----------
Confidence 34577888999999999999998 577876633210 11011
Q ss_pred cccceeEEEEeecCCCCEEEEeeCC--CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
....|--+-|+ ..+++..+.+ +.+++.+...+..++..
T Consensus 45 ~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~------------------------------------ 84 (391)
T KOG2110|consen 45 EGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEI------------------------------------ 84 (391)
T ss_pred CCeEEEEeecc----cceeEEEecCCCceEEEEEcccCceEEEE------------------------------------
Confidence 01334444554 3466666543 45788877766544432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.....|.++.++. +.|+++-...|+|||++ .-+.+.+++ ..+.+...
T Consensus 85 --------------------------~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~g 131 (391)
T KOG2110|consen 85 --------------------------FFPTSILAVRMNR--KRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKG 131 (391)
T ss_pred --------------------------ecCCceEEEEEcc--ceEEEEEcccEEEEecc-cceeehhhh----ccCCCccc
Confidence 2245788888865 46777733349999999 444555432 12345556
Q ss_pred eEEEEEecCCCcEEEEEeC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 270 ITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
+.++.+++.+ .+++.-+. .|.|.+||..+-+.. ..+ ..|.+.+.+++|+++|.+||++++
T Consensus 132 l~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I-------------~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 132 LCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTI-------------NAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred eEeeccCCCC-ceEEecCCCCCceEEEEEcccceee----eEE-------------EecCCceeEEEECCCCCEEEEecc
Confidence 7777777776 67776543 699999999875432 333 347899999999999999999987
Q ss_pred -C-cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 348 -M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 348 -~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
| .|||+.+.. ++.+.+|+-....+. +.+++|+|++++|++.|..++|+||.++..
T Consensus 194 KGTVIRVf~v~~-G~kl~eFRRG~~~~~-------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 194 KGTVIRVFSVPE-GQKLYEFRRGTYPVS-------------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CceEEEEEEcCC-ccEeeeeeCCceeeE-------------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 4 589999985 888888875544431 279999999999999999999999999864
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.6e-15 Score=141.64 Aligned_cols=266 Identities=13% Similarity=0.119 Sum_probs=163.2
Q ss_pred CccccccceEEEEEccCCCEEEEEe-cCCcEEEEEecC-CcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
..+.+.+....++++|++++|++++ .++.|.+|++.. ++. ....... ..
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~--- 79 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP--- 79 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC---
Confidence 3344556788999999999987765 578899999862 221 1111111 11
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
+....++|+ |+++++++++ .++.|.+|++.+ +......
T Consensus 80 ---------~~p~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----------------------------- 119 (330)
T PRK11028 80 ---------GSPTHISTD--HQGRFLFSASYNANCVSVSPLDKDGIPVAPI----------------------------- 119 (330)
T ss_pred ---------CCceEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCCCCCce-----------------------------
Confidence 345678887 8898888876 588999999864 2211100
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.. ..+.....+++++|++++++++ .++.|.+||++..+...... ...
T Consensus 120 ----------------------------~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~ 168 (330)
T PRK11028 120 ----------------------------QI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE 168 (330)
T ss_pred ----------------------------ee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc
Confidence 00 0112235568899999988665 78999999998533221100 000
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.... .......++|+|++ ++++++.. ++.|.+||+............+... +.. .. +......+.++|++
T Consensus 169 ~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~---p~~---~~-~~~~~~~i~~~pdg 239 (330)
T PRK11028 169 VTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM---PAD---FS-DTRWAADIHITPDG 239 (330)
T ss_pred eecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC---CCc---CC-CCccceeEEECCCC
Confidence 0111 12345789999999 88877766 8999999997421111111111110 000 00 11234568999999
Q ss_pred CEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 340 QHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 340 ~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
++++++. ++.|.+|++...+..+ .+.++..... . ...+.++|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999874 3899999997533322 2222211000 0 057999999999998775 8999999885
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=3e-17 Score=151.67 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=179.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+|++|+.||+.+|+|+.|..|.||...-.- ..--.|.
T Consensus 51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----------------------------~LkYSH~-------- 93 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----------------------------ILKYSHN-------- 93 (1081)
T ss_pred cccceEEEEEEccCCceeccCCCceeEEEecccccc-----------------------------eeeeccC--------
Confidence 599999999999999999999999999999854221 1123577
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.|+.|+ |-...|++++-. ..-+|........+
T Consensus 94 ----D~IQCMsFN--P~~h~LasCsLs-dFglWS~~qK~V~K-------------------------------------- 128 (1081)
T KOG1538|consen 94 ----DAIQCMSFN--PITHQLASCSLS-DFGLWSPEQKSVSK-------------------------------------- 128 (1081)
T ss_pred ----CeeeEeecC--chHHHhhhcchh-hccccChhhhhHHh--------------------------------------
Confidence 899999997 677889998753 36688776544222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
......+.+++|..||++++.| .+|+|.|-+-. +.+...+- .-.+.+.
T Consensus 129 -------------------------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Ns 177 (1081)
T KOG1538|consen 129 -------------------------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNS 177 (1081)
T ss_pred -------------------------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCC
Confidence 2335678899999999999999 99999998765 44444331 2345778
Q ss_pred ceEEEEEecCCC----cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 269 VITSAEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 269 ~v~~v~~~p~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|++++|+|... ..+++.....++.+|.+...... +. +.+ .-...++.+.++|+|++.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-k~-r~L----------------~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-KD-RAL----------------NFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-cc-ccC----------------CCCchhheeccCCcEEEE
Confidence 999999998741 36888888888888887653211 00 111 224578899999999987
Q ss_pred E-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 345 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
| +++.+++|--+ +..+.+....+..+ +.++..|++++++.|+.||+|..|++.
T Consensus 240 GGsdk~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhH
Confidence 7 57999999754 66676666555554 899999999999999999999999873
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.3e-14 Score=141.17 Aligned_cols=317 Identities=23% Similarity=0.338 Sum_probs=220.0
Q ss_pred cceEEEEE-ccCCC-EEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 33 DIVSAIEF-DKTGD-YLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 33 ~~v~~v~~-s~~g~-~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+..+.+ ++++. +++..+ .|+.+.+|+.... ......+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~-------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP--------------------------GKLIRTLEGHS-------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCC--------------------------CeEEEEEecCc--------
Confidence 36777777 88887 555444 4899999998851 12446788888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|..++|+ +++..+++++. |+.+++|++..+......
T Consensus 156 ----~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 194 (466)
T COG2319 156 ----ESVTSLAFS--PDGKLLASGSSLDGTIKLWDLRTGKPLSTL----------------------------------- 194 (466)
T ss_pred ----ccEEEEEEC--CCCCEEEecCCCCCceEEEEcCCCceEEee-----------------------------------
Confidence 889999998 77778888875 999999999875433322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+|++. .++++ .|+.|++||.. .+..... .+..|
T Consensus 195 --------------------------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~ 241 (466)
T COG2319 195 --------------------------AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGH 241 (466)
T ss_pred --------------------------ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCC
Confidence 56889999999999998 66665 89999999887 4444331 15667
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.... ...|+|++ ..+++++.|+.+++||++..... .... .+|...+.++.|+|++..+++++
T Consensus 242 ~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 242 SDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTL-------------SGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred Ccce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEE-------------ecCCccEEEEEECCCCCEEEEee
Confidence 6664 33899998 89999999999999999876431 0111 23467899999999888888764
Q ss_pred -CCcEEEEEeeCCCCceeEee--ccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCCCCcceEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 422 (501)
++.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+.+.+|++.... ....
T Consensus 304 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 366 (466)
T COG2319 304 SDGTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKT 366 (466)
T ss_pred CCCcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEE
Confidence 57899998875 44444443 444422 567774343455555 688999999998775 2122
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccc-ccC-CCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY-NLS-SKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~-~~~-~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.... ..+..+.+.+ . ... ...+..++. .+|.......... ... ..+....+++++..++.++ ++.+.+
T Consensus 367 ~~~~-~~~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 367 LEGH-SNVLSVSFSP-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred ecCC-ceEEEEEECC-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 2222 2266777766 4 433 334677777 8995543332222 112 6889999999999998865 555777
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 439 ~~ 440 (466)
T COG2319 439 WD 440 (466)
T ss_pred Ee
Confidence 75
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-16 Score=153.87 Aligned_cols=213 Identities=14% Similarity=0.157 Sum_probs=144.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+..++|+ |+|+.|+.++.+ ..|++||+.+++......
T Consensus 204 ~~v~~p~wS--PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------ 245 (429)
T PRK01742 204 QPLMSPAWS--PDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------ 245 (429)
T ss_pred CccccceEc--CCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence 779999998 899999988643 479999998775433210
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEE--ECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~ 266 (501)
+ .++ ...++|+|||+.|+.+ .++.+.|| |+. .+.... +..+
T Consensus 246 ----------------------~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 290 (429)
T PRK01742 246 ----------------------F-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG 290 (429)
T ss_pred ----------------------C-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence 0 232 2357999999988875 57766665 554 333322 3445
Q ss_pred ccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...+..+.|+|+| +.|+.++ .+|...+|++....... ..+.. .. ....|+|||++|+..
T Consensus 291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEE
Confidence 5667889999999 7665544 57888999875432111 11111 22 357899999999877
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC--CCCcceEEE
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV 423 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~ 423 (501)
....+.+||+.+ ++.......... ..+.|+|||++|+.++.++.+.+|.+. ++ .....+
T Consensus 351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l 411 (429)
T PRK01742 351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL 411 (429)
T ss_pred cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence 655677799875 443322122111 358899999999999999988888763 34 345778
Q ss_pred ecccCcccceeeccC
Q 010801 424 EAGKNENRKPILQAA 438 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~ 438 (501)
..|...+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888888888874
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=2e-15 Score=140.88 Aligned_cols=238 Identities=10% Similarity=-0.000 Sum_probs=147.5
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~w 295 (501)
.....++++|++++|+++ .++.|.+|+++..+.. .... .. ........++++|++ ++|++++. ++.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence 445678999999988765 6899999999733322 1110 01 122345789999999 77776654 8999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCcee------Eeec
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA------TFKI 367 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~------~~~~ 367 (501)
|+.+............. ......++++|+|+++++++ ++.|.+||+.+.+.... ....
T Consensus 108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 99743222111111111 13457788999999987654 49999999975332211 1111
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCC--CCc-ceEEEeccc------Ccccceeecc
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV--GSA-GGITVEAGK------NENRKPILQA 437 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~~~-~~~~~~~~~------~~v~~~~~~~ 437 (501)
...+ ..+.|+|+|++++++.. ++.|.+|+++. +.. ....+.... .....+.++|
T Consensus 174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 1111 57999999999988876 89999999974 211 122332211 1122466777
Q ss_pred CCccccCccceeeeecc-cce-eecccc--CCccccccc---CCCeEEEEEccCCCEEEEee--CCeEEEEe
Q 010801 438 APRARRSSLSNLTRGLY-RQA-HENSSS--GHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~-~~~-~iw~~~--~~~~~~~~~---~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 500 (501)
++++ +..+.. ++. .+|+.+ +.......+ .....+++++|||++|++++ ++.+.+|.
T Consensus 238 --dg~~-----lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 238 --DGRH-----LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred --CCCE-----EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 6666 555543 455 888543 211122221 22456899999999999887 55688874
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.2e-15 Score=145.62 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=152.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+| -+..+++.|+.+|+|-+||+..+......
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s---------------------------------------- 281 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPS---------------------------------------- 281 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCc----------------------------------------
Confidence 6799999996 45678888899999999999887632111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC----CCCc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL 266 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~ 266 (501)
++......|...++.+.|..+. .-++++ .||.|..|+++.-............. -...
T Consensus 282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 0001115788999999995543 447777 99999999887433322221111000 0112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~ 345 (501)
...+++++|.+..++.|++|+.+|.|.--+....+.... ..++. ...+..|.++|..+.++|-+. +++++
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccceeeee
Confidence 346799999998888999999999988744333221110 11122 222345788999999999765 44556
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|.+++||.-.....++..+..+...+ ++++|||.. ..++++..||.|.|||+...
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 689999999873367777776666543 799999975 56778888999999999754
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=132.93 Aligned_cols=209 Identities=9% Similarity=0.160 Sum_probs=157.3
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.++..++++..|+. +-++|.+.+-|-+..|||++++. .+.+.+.+-+|.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------------~~~vkTQLIAHD------ 196 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------------SGTVKTQLIAHD------ 196 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------------ccceeeEEEecC------
Confidence 35688999999998 67899999999999999999873 233557788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+|+|.. ..-+.|++.+.||.+|+||++..+...+.-..
T Consensus 197 ------KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~------------------------------- 238 (364)
T KOG0290|consen 197 ------KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED------------------------------- 238 (364)
T ss_pred ------cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC-------------------------------
Confidence 7799999982 34578999999999999999876533221000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.....+...++|++. .+++++ + +...|.|-|++.....+. ++.
T Consensus 239 ---------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L~ 284 (364)
T KOG0290|consen 239 ---------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RLR 284 (364)
T ss_pred ---------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hhh
Confidence 122456778899874 556666 4 788999999996665554 489
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcc--cccccceeecccccCCCcceeeecccceeEEEEee-CCCE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH 341 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~ 341 (501)
+|.+.|++++|.|..+..|++++.|..+.+||+.+.-. ....+..+.. .+.|+.+.|+| .+.+
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQPDW 350 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccCCCE
Confidence 99999999999999888999999999999999986422 1111112222 46799999996 5678
Q ss_pred EEEEcCCcEEEE
Q 010801 342 LLSRDYMNLKLW 353 (501)
Q Consensus 342 l~~~~~~~i~lw 353 (501)
|+.+..+++.+.
T Consensus 351 iai~~~kkleiL 362 (364)
T KOG0290|consen 351 IAICFGKKLEIL 362 (364)
T ss_pred EEEEecCeeeEE
Confidence 888766655543
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=5.4e-16 Score=131.37 Aligned_cols=226 Identities=15% Similarity=0.232 Sum_probs=166.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+|+|.+|++|+..+|++.....|-||...+.+ .++...+++.|+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 4789999999999999999999999999987664 266778899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEec-cccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|+.|+|+ |..+.|++++.|+.-++|.. .+++.+...
T Consensus 56 --~~vtgvdWa--p~snrIvtcs~drnayVw~~~~~~~Wkptl------------------------------------- 94 (361)
T KOG1523|consen 56 --KIVTGVDWA--PKSNRIVTCSHDRNAYVWTQPSGGTWKPTL------------------------------------- 94 (361)
T ss_pred --cceeEEeec--CCCCceeEccCCCCccccccCCCCeeccce-------------------------------------
Confidence 999999998 78889999999999999998 555544332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+ ..+...++++.|+|.++.|++| ....|.+|-++. +...-+ ....-..+...
T Consensus 95 ---------------------vL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWV---sKhikkPirSt 148 (361)
T KOG1523|consen 95 ---------------------VL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWV---SKHIKKPIRST 148 (361)
T ss_pred ---------------------eE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceeh---hhhhCCccccc
Confidence 11 4667789999999999999999 888999998883 322210 00112446778
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc-------eeeecccceeEEEEeeCCCEE
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-------FFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~i~~~~~sp~~~~l 342 (501)
|.+++|+|++ -+|+.|+.|+..+++..--.....+. . +.+.+..- .+..-.+.+..+.|+|+|..|
T Consensus 149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekp-----a-p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKP-----A-PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred eeeeeccCCc-ceecccccCcceeEEEEeeeccccCC-----C-CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 9999999998 89999999999999975432211100 0 00111111 112335789999999999999
Q ss_pred EE-EcCCcEEEEEeeCCCCceeEe
Q 010801 343 LS-RDYMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 343 ~~-~~~~~i~lwd~~~~~~~~~~~ 365 (501)
+- +.|..+.+-|...+.+.+...
T Consensus 222 awv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eEecCCCceEEeecCCCchhccch
Confidence 95 467999999886433334433
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=143.64 Aligned_cols=241 Identities=20% Similarity=0.273 Sum_probs=159.6
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+..+|++.|+|++|+.+|.+||+|+.|-++.|||.-..+. ....-.||.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt---- 93 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT---- 93 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc----
Confidence 34557999999999999999999999999999999774332 123346899
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|.+++|.|..++..+++|+.|..|+++|+...+....- .
T Consensus 94 --------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d---~---------------------------- 134 (758)
T KOG1310|consen 94 --------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD---H---------------------------- 134 (758)
T ss_pred --------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc---c----------------------------
Confidence 9999999999888899999999999999999863311100 0
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecC--CC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK--PS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~ 261 (501)
+ .....+.+ ..|...|..++-.|++ ..+.++ .||+|+-+|++....+-..-+.. ..
T Consensus 135 --------~-----------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 135 --------G-----------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred --------C-----------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 0 00111111 6788999999999988 677777 99999999998432221100000 00
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccC----CCcceeeecc----------
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEII---------- 327 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~---------- 327 (501)
++...--...++..+|..+.+|++|+.|--.++||.+.............. .+| ..+.+-++|-
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccc
Confidence 011111345789999998889999999999999996532111100011000 000 0011111221
Q ss_pred -cceeEEEEeeCCCEEEEE-cCCcEEEEEeeC
Q 010801 328 -ASISDIKFANDGQHLLSR-DYMNLKLWDIRM 357 (501)
Q Consensus 328 -~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~ 357 (501)
..++-++|+|+|.-|+.. +...|+++|+..
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 235778899999877765 347899999875
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.1e-14 Score=139.51 Aligned_cols=307 Identities=15% Similarity=0.228 Sum_probs=206.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|+-.++|.++||+++++|+|..||+|.+|.--..+. .-...+.++=|-
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------- 251 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------- 251 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc-------
Confidence 45777799999999999999999999999997433111 111335677787
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|+ ++|.+|++|+..+.+-+|.+.+++ .+
T Consensus 252 -----~~V~~L~fS--~~G~~LlSGG~E~VLv~Wq~~T~~-kq------------------------------------- 286 (792)
T KOG1963|consen 252 -----DEVNSLSFS--SDGAYLLSGGREGVLVLWQLETGK-KQ------------------------------------- 286 (792)
T ss_pred -----cccceeEEe--cCCceEeecccceEEEEEeecCCC-cc-------------------------------------
Confidence 789999998 899999999999999999999877 22
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC---CCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS---NMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~~ 264 (501)
|++.-.++|..+.++||+.+.+.. .|+.|.+-..........+-.+++. .-.
T Consensus 287 ------------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 287 ------------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT 342 (792)
T ss_pred ------------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence 225667899999999999999888 9999999876422221111111111 012
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
...+-.+.++++|.- +.++..+..|.|.+||+.+.+...+. ++... +...+. ..+...+++++.+-.|.++++
T Consensus 343 ~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~-n~~~~~----~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDE-NYSDGD----VNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred cccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeE-EEEee-cccCCc----ceeEEeeeeehhhccceEEEE
Confidence 234567888999965 78888899999999999887655321 22221 111111 023456888888888999998
Q ss_pred Ec---------C--CcEEEEEeeCCCCc---eeEe-eccccccccccccCCCCCcceeeEEE-EcCCCc-EEEEEeCCCe
Q 010801 345 RD---------Y--MNLKLWDIRMDSTP---VATF-KIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGSYSNL 407 (501)
Q Consensus 345 ~~---------~--~~i~lwd~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~-~l~s~~~dg~ 407 (501)
.. + -.+++|......+. ...+ ..|.... ...+ .++... ..++++.||.
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCe
Confidence 52 1 35788977532221 1111 2333322 2333 333333 7899999999
Q ss_pred EEEEecCCCCcc---------eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 408 LRIFSHGVGSAG---------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 408 i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
++||-+...+.. ...-.-|+.++...+|+. +|.. ...+.++. .+|+...
T Consensus 481 ~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~--dGsl------la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 481 FKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ--DGSL------LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEEEecccccCcCccceEEeeeeccccCcccchhhcC--CCcE------EEEecCCEEEEecCCC
Confidence 999998432211 111113788999999988 6654 56666677 9995553
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=142.01 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=215.2
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
..-.|.+.|+.|.|+..|..|++|+.|..|.+||+..+... ..-..||.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~----- 185 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC----- 185 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc-----
Confidence 34469999999999999999999999999999999977542 22345788
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|..-+|.|..+..-+++++.||.+++=.+... .+..+.
T Consensus 186 -------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~-------------------------------- 226 (559)
T KOG1334|consen 186 -------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK-------------------------------- 226 (559)
T ss_pred -------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce--------------------------------
Confidence 7788889998888889999999999998765432 221111
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.+..|.+.|..++.-|+.. .|.++ .|+.+.-+|++......... . .
T Consensus 227 ---------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-c----r 274 (559)
T KOG1334|consen 227 ---------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-C----R 274 (559)
T ss_pred ---------------------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-e----e
Confidence 0157888999999988654 45566 99999999998443222211 1 1
Q ss_pred CCccc---ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc--cceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 264 DDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 264 ~~~~~---~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
..+.. ....++.+|...+.+++++.|-.+++||.+.-...... +..+.. ..........|++++|+.+
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-------~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-------HHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-------ccccccCcccceeEEecCC
Confidence 22222 56788999988679999999999999998764321100 011111 0111122457999999965
Q ss_pred C-CEEEEEcCCcEEEEEeeCC-C----------CceeE-eeccccccccccccCCCCCcceeeEEE-EcCCCcEEEEEeC
Q 010801 339 G-QHLLSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSY 404 (501)
Q Consensus 339 ~-~~l~~~~~~~i~lwd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~s~~~ 404 (501)
+ .+|++-.|-.|+++.-... + ..+.. +++|.....+ ..+- |-|...|+++||.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV-------------KgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV-------------KGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc-------------ceeeeccCccceEEecCc
Confidence 4 5666667788999954321 1 12223 6777765421 3443 6678899999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
-|.|.||+-.++ .+...+++...-|.|+.-.|- .+.||+.+-+.- +||..
T Consensus 415 CGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 415 CGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEEEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence 999999998887 555777888778888888774 233899999988 99944
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=128.33 Aligned_cols=289 Identities=9% Similarity=0.053 Sum_probs=175.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|+++.|- ...+|.+|..-|.|++|++++.+-....... +...+.+....+.......+. +
T Consensus 15 ~~v~s~~fq---a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~------------g~~~it~lq~~p~d~l~tqgR---d 76 (323)
T KOG0322|consen 15 SSVTSVLFQ---ANERLMSGLSVGIVKMWVLQTERDLPLIRLF------------GRLFITNLQSIPNDSLDTQGR---D 76 (323)
T ss_pred chheehhhc---cchhhhcccccceEEEEEeecCccchhhhhh------------ccceeeceeecCCcchhhcCC---C
Confidence 889999994 4567999999999999999987755443211 112223333333333333333 6
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-----CCC---EEEE--E-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCE---TFVS--A-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~---~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+.+|++...... ..|.-.++++.|.+ .++ .++. + ....+.+-|... ...+.+ ....
T Consensus 77 ~~L~lw~ia~s~~i-------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~-~tqv~i---~dd~ 145 (323)
T KOG0322|consen 77 PLLILWTIAYSAFI-------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD-TTQVQI---ADDS 145 (323)
T ss_pred ceEEEEEccCcceE-------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCc-cceeEc---cCch
Confidence 68889998863221 23333444454432 221 1222 1 111122223221 111111 1112
Q ss_pred CCCcccceEEEEEecC-CC-cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 263 MDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~-~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
-.+..+.+.+..+.-+ +. -+++.|.++|.+.+||+.++.... .. +....-......|..++.++.|.+.-.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------~~-~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------QL-PQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee------cc-ccccccccchhhccCcceeeeechhhc
Confidence 2334456777765432 21 256777889999999999874332 22 222222223345788999999987544
Q ss_pred EEEEEc-CCcEEEEEeeCCCCcee---EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVA---TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.=++|+ +..+..|++......++ ++...... +..+.+-||++.+|+++.|++||||+-++.
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG---------------v~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG---------------VSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEEecCCC---------------ccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 444443 47888998864211111 11111111 157899999999999999999999999998
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
..+ ..++-|...+.+++|+| +..+ +|.++.|.. .+|+
T Consensus 284 ~pL-AVLkyHsagvn~vAfsp--d~~l-----mAaaskD~rISLWk 321 (323)
T KOG0322|consen 284 NPL-AVLKYHSAGVNAVAFSP--DCEL-----MAAASKDARISLWK 321 (323)
T ss_pred Cch-hhhhhhhcceeEEEeCC--CCch-----hhhccCCceEEeee
Confidence 555 89999999999999999 4445 899999999 9994
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.3e-16 Score=142.37 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=181.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
.++..|. +.|..++|. +....|++++.|++|++|+++... ...
T Consensus 288 ~tl~s~~------------d~ir~l~~~--~sep~lit~sed~~lk~WnLqk~~--~s~--------------------- 330 (577)
T KOG0642|consen 288 FTLRSHD------------DCIRALAFH--PSEPVLITASEDGTLKLWNLQKAK--KSA--------------------- 330 (577)
T ss_pred eeeecch------------hhhhhhhcC--CCCCeEEEeccccchhhhhhcccC--Ccc---------------------
Confidence 3667777 889999997 566789999999999999994311 000
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
....+++.+| .+|.++|.|+++.++++.+++| -||+|+.|++.......
T Consensus 331 -----------------------------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ 380 (577)
T KOG0642|consen 331 -----------------------------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD 380 (577)
T ss_pred -----------------------------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence 0012344444 7999999999999999999999 99999999776333333
Q ss_pred eeeecC--CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 254 NIVDMK--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 254 ~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
...+.. ...+.+|...|+.+++++.. ..|++++.||++++|+...... .+|.... . .+.-.
T Consensus 381 ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~----------e-~g~Pl 443 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPK----------E-HGYPL 443 (577)
T ss_pred cccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcc----------c-cCCcc
Confidence 222111 12478999999999999987 8899999999999999876543 1222200 0 12233
Q ss_pred EEEEeeCCCEEEEE--cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQHLLSR--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~~l~~~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+.+-...-.+..+ ..+.--+++... ...+..+.......+ ..... +..+.++|.+.+.+++..|+.|+
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~-----~~~~~---in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGP-----RRYPQ---INKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcc-----cccCc---cceEEecCCCCeeEecccCCcee
Confidence 44443222111111 113333344433 222333322211110 00011 15788999999999999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
++|..++ .+.....+|...+.++++.| +|-+ |.+|+.|+. .+|+..
T Consensus 515 ~~dn~~~-~~l~s~~a~~~svtslai~~--ng~~-----l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 515 FFDNKTG-KILHSMVAHKDSVTSLAIDP--NGPY-----LMSGSHDGSVRLWKLD 561 (577)
T ss_pred ccccccc-ccchheeeccceecceeecC--CCce-----EEeecCCceeehhhcc
Confidence 9999998 45588899999999999999 6767 999999999 999554
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.4e-16 Score=133.82 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=160.6
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
+.+.+.+|. +.|++|.|+ .++++|++|+.|..+++|+++.....++
T Consensus 48 ~qKD~~~H~------------GCiNAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------------- 93 (609)
T KOG4227|consen 48 CQKDVREHT------------GCINALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKT-------------------- 93 (609)
T ss_pred hhhhhhhhc------------cccceeeec--cCCeEEeecCCcceeeeechHHHHhhcC--------------------
Confidence 345577888 999999998 7899999999999999999876432221
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
.+++...-..|...|.|++|...+..+.+| .+++|.+-|++ .++
T Consensus 94 ----------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~q 138 (609)
T KOG4227|consen 94 ----------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQ 138 (609)
T ss_pred ----------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cce
Confidence 112222214677899999999999999999 99999999999 444
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.+.+. .-....+.|+.+..+|.. +.|++.+.++.|.+||.+...... ..+-. . .......
T Consensus 139 si~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-A----------N~~~~F~ 198 (609)
T KOG4227|consen 139 SIYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-A----------NSGKNFY 198 (609)
T ss_pred eeeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-c----------CCCccce
Confidence 44431 112234589999999997 999999999999999998764221 11111 1 1134577
Q ss_pred EEEEeeCCC-EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~-~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+-|+|... +|++.+. +-+.+||.+....++....+....... ..+. .++-|+|+|..+.+--....-.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-----~~~~----M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-----NTEW----MGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-----chhh----hheeeCCCCCeehhhhccCCCE
Confidence 888999754 5556655 889999998766666555443332110 0011 3688999999988776666666
Q ss_pred EEecCCCCcc
Q 010801 410 IFSHGVGSAG 419 (501)
Q Consensus 410 iwd~~~~~~~ 419 (501)
+||+.+.++.
T Consensus 270 ~~D~~S~R~~ 279 (609)
T KOG4227|consen 270 YFDFISQRCF 279 (609)
T ss_pred Eeeeecccce
Confidence 7888765443
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1e-15 Score=130.05 Aligned_cols=220 Identities=19% Similarity=0.278 Sum_probs=144.1
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
-++|||+|+|+|+.+. -++.|-|.++-+.. ..+.. - +.|
T Consensus 13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~---------------------------qlf~c-l------------dki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLH---------------------------QLFLC-L------------DKI 51 (447)
T ss_pred ceeECCCCCeeeeeee-eEEEEeccchhhHH---------------------------HHHHH-H------------HHh
Confidence 5789999999999875 48888887765431 11111 1 558
Q ss_pred eEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..|.|. .+..+++.+ ..|+.|.+|++...+....+
T Consensus 52 ~yieW~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------ 87 (447)
T KOG4497|consen 52 VYIEWK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------ 87 (447)
T ss_pred hheeee--ccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence 889997 666666655 57889999999877644432
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
....+++.+++|+|||+.++ ++ .+-.|.+|.+.++. ... ++-....+..+
T Consensus 88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~--------~~~pK~~~kg~ 139 (447)
T KOG4497|consen 88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GYL--------LPHPKTNVKGY 139 (447)
T ss_pred -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-eEE--------ecccccCceeE
Confidence 45567889999999996655 46 89999999999443 332 23334456889
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC---CcE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL 350 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~---~~i 350 (501)
+|+|+| ++.+.++.-.....+.+..-+.- ...+.+.. .+-..+.+.|+|||..||+=+. -.|
T Consensus 140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f~~-------------dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 140 AFHPDG-QFCAILSRRDCKDYVQISSCKAW-ILLKEFKL-------------DTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred EECCCC-ceeeeeecccHHHHHHHHhhHHH-HHHHhcCC-------------CcccccCceECCCCcEEEEecchhhhee
Confidence 999999 88887765322211122111000 00011111 1345788999999988876431 223
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+.|... .+. ..++|+|.+++|+.|+.|+.+||.+
T Consensus 205 ~aYe~~------------lG~----------------k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 205 YAYERG------------LGL----------------KFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeeeec------------cce----------------eEEEeccccceEEeeccchhhhhhc
Confidence 322221 111 4799999999999999999998854
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=129.92 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=172.6
Q ss_pred CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 207 (501)
..++++.+.|.|++||..+++....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f------------------------------------------------------ 66 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF------------------------------------------------------ 66 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee------------------------------------------------------
Confidence 46888888999999999987654433
Q ss_pred eeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceEEEEEecCCCcEE
Q 010801 208 RCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLL 283 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l 283 (501)
.++...++.+.|.. ....+.+| .||+|++||++..++..++ ....+. .+..+++.+-.+ +++
T Consensus 67 -------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~~~~~~~~~f~~ld~nck~-~ii 132 (376)
T KOG1188|consen 67 -------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI------SWTQQSGTPFICLDLNCKK-NII 132 (376)
T ss_pred -------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe------eccCCCCCcceEeeccCcC-CeE
Confidence 45666666777754 45567777 9999999999966654432 134444 456777777666 788
Q ss_pred EEEeC----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-CCcEEEEEeeC
Q 010801 284 AYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRM 357 (501)
Q Consensus 284 ~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~-~~~i~lwd~~~ 357 (501)
++|+. +-.|.+||+|..+... ..+. ..|...|+++.|+|. -+.|++|+ ||-|.|||+..
T Consensus 133 ~~GtE~~~s~A~v~lwDvR~~qq~l---~~~~------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 133 ACGTELTRSDASVVLWDVRSEQQLL---RQLN------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred EeccccccCceEEEEEEeccccchh---hhhh------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 88765 6789999999875321 2222 237789999999995 46788886 79999999975
Q ss_pred CCC---ceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEecccC-----
Q 010801 358 DST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----- 428 (501)
Q Consensus 358 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 428 (501)
+.. ++.++. +.. +| ..+.|..++ +.|.+-+..+...+|+++.+++....-+..-.
T Consensus 198 d~EeDaL~~viN-~~s------------SI---~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 198 DNEEDALLHVIN-HGS------------SI---HLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred CcchhhHHHhhc-ccc------------ee---eeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 321 122222 111 12 578998876 45888999999999999988654221111000
Q ss_pred ----ccccee-eccCCccccCccceeeeecc-cce-eecccc--------CCccccc-ccCCCeEEEEEccCCCEEEEee
Q 010801 429 ----ENRKPI-LQAAPRARRSSLSNLTRGLY-RQA-HENSSS--------GHHELSY-NLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ----~v~~~~-~~~~~~~~~~~~~~l~~~~~-~~~-~iw~~~--------~~~~~~~-~~~~~i~~~~~sp~~~~la~~~ 492 (501)
--+-+- ..|. ++.. ++.++. -++ .++... .....+. +|..-|+++.|...+.++.+|+
T Consensus 262 ~~~~~dY~I~~~~~~-~~~~-----~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPG-DKDT-----CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred hhhhhhheeecccCC-Ccce-----EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 000000 1121 2222 333433 333 555111 2222233 3667889999999999999999
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|+ +.+|.
T Consensus 336 EDG~l~~Wk 344 (376)
T KOG1188|consen 336 EDGLLQAWK 344 (376)
T ss_pred CCceEEEEe
Confidence 777 77875
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=5.2e-15 Score=125.87 Aligned_cols=288 Identities=13% Similarity=0.146 Sum_probs=165.7
Q ss_pred ccceEEEEEccCCCEEEEE-ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-+.|.-+.|..|..++..+ ..|+.|.+|++...+ ....+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~--------- 91 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ--------- 91 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence 3668889999988777654 678899999988442 334444444
Q ss_pred ccccceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+++.+++|+ |+|+.++ +...|-.|.+|.+.+.+...+.- ...++....+.+++.+.+-..
T Consensus 92 ---agls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~--------------pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 92 ---AGLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPH--------------PKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ---CcceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEecc--------------cccCceeEEECCCCceeeeee
Confidence 889999998 7886555 55689999999998866443321 112222333344444333222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.. ......++........++.+ .-.+-..+.+.|+|||..|++= -+-.|..|...
T Consensus 153 Rr--DCkdyv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------------- 210 (447)
T KOG4497|consen 153 RR--DCKDYVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------------- 210 (447)
T ss_pred cc--cHHHHHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec-------------------
Confidence 10 00000000000001111222 2334456678888888766542 22233322221
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc---------------------------cceee-----cc-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---------------------------ARILR-----DA- 313 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------------~~~~~-----~~- 313 (501)
-.+..++|+|.+ ++|++|+.|+.+|+.+--+-+..... .-.+. .|
T Consensus 211 -lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 211 -LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred -cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 245677888887 88888888888887554332110000 00000 00
Q ss_pred ----------cccC------CCcceeeecccceeEEEEeeCCCEEEEEcC---CcEEEEEeeCCCCceeEeecccccccc
Q 010801 314 ----------AESH------GSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 314 ----------~~~~------~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
...+ .+...+......+.-++|++|..|+++..| +.+-+||++. .+....+. ...++
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~pi-- 364 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHPI-- 364 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccce--
Confidence 0000 000011223456888999999999999865 8999999984 44433332 22332
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
....|+|....|+.+.....+++|....
T Consensus 365 -------------raf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 365 -------------RAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -------------eEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 6899999988888887778899998764
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.4e-15 Score=144.63 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=144.3
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|...+.+.+|||||+.||.++.+ ..|++||+.+++. +.+..+.+|.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~----- 250 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN----- 250 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc-----
Confidence 467789999999999999987643 3699999987743 1223344443
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee-CCCeEEEE--eccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..++|+ |||+.|+.++ .+|.+.|| |+.++....+
T Consensus 251 ----------~~~~wS--PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------- 287 (429)
T PRK01742 251 ----------GAPAFS--PDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------- 287 (429)
T ss_pred ----------CceeEC--CCCCEEEEEEecCCcEEEEEEECCCCCeEee-------------------------------
Confidence 467897 8999888765 67776665 5444442221
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
..+...+...+|+|||+.|+.+ .++...||+++..+.....
T Consensus 288 -------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~------ 330 (429)
T PRK01742 288 -------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL------ 330 (429)
T ss_pred -------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE------
Confidence 2344557789999999987754 6788899887643332222
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+ .+.. ....|+|+| +.|+..+.++ +.+||+.+++.. .+.. ......+.|+|||++
T Consensus 331 -l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~--------------~~~~~~~~~sPdG~~ 385 (429)
T PRK01742 331 -V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSS--------------TFLDESPSISPNGIM 385 (429)
T ss_pred -e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecC--------------CCCCCCceECCCCCE
Confidence 1 1222 357899999 8888877765 556999877532 1111 012346789999999
Q ss_pred EEEEc-CCcEEEEEee-CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 342 LLSRD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
|+.++ ++.+.+|++. ..++....+..+...+ ...+|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 99875 4777777653 2477788887776543 56888874
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-14 Score=123.24 Aligned_cols=268 Identities=14% Similarity=0.128 Sum_probs=166.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-.+..++|++--.-+|++..|-.|+||+-..... ..++.-.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p----------------------------t~Lks~s---------- 139 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP----------------------------TKLKSVS---------- 139 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC----------------------------ceecchh----------
Confidence 45688899999666688899999999999665221 2233222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+..|++++|-|. .+..|+.|+..| |.+|.....-.. ....+-.
T Consensus 140 -QrnvtclawRPl-saselavgCr~g-IciW~~s~tln~~r~~~~~s--------------------------------- 183 (445)
T KOG2139|consen 140 -QRNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTLNANRNIRMMS--------------------------------- 183 (445)
T ss_pred -hcceeEEEeccC-Ccceeeeeecce-eEEEEcCccccccccccccc---------------------------------
Confidence 266999999852 345777777655 999976532111 1000000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.. ..+..+ . .+| ..|++|.|++||..++++ .|..|.|||.. .+..+.+ .....+
T Consensus 184 --~~-----------~~qvl~-~-pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL-------~~~glg 239 (445)
T KOG2139|consen 184 --TH-----------HLQVLQ-D-PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPL-------IPKGLG 239 (445)
T ss_pred --cc-----------chhhee-C-CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCcccc-------cccCCC
Confidence 00 001111 1 455 789999999999999997 89999999999 4444432 112345
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~ 348 (501)
.+.-+.|+||+ .+|..++-|+..++|...+.--.. +-.-+ .+.|...+|+|+|++|+-...+
T Consensus 240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcC
Confidence 67899999999 999999999999999655432111 11111 3589999999999998877667
Q ss_pred cEEEEEeeCCCCceeEe-eccccccccccccCC-----C--CCcceeeEEEEcCCCcEEEEEeCCC--------eEEEEe
Q 010801 349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYN-----N--DSIFDKFECSVSGDGLHFATGSYSN--------LLRIFS 412 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~s~~~~~l~s~~~dg--------~i~iwd 412 (501)
.-++|.+...++..... .+....+..+.++.+ + -+-....+++|+|.|.+||+.-..+ .|.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 78888876544332111 000000000111100 0 0111236899999999999765433 355666
Q ss_pred cCC
Q 010801 413 HGV 415 (501)
Q Consensus 413 ~~~ 415 (501)
...
T Consensus 382 tr~ 384 (445)
T KOG2139|consen 382 TRK 384 (445)
T ss_pred ccc
Confidence 553
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=5.3e-14 Score=121.77 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=109.5
Q ss_pred ceEEEEecCCCCEEEE-E--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
.|..+-|+.+ ++|. + .-+.+++.++......... .....|.+|.++.+ + |+++=++ .|.|||
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr~--R-LvV~Lee-~IyIyd 112 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEI---------FFPTSILAVRMNRK--R-LVVCLEE-SIYIYD 112 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEE---------ecCCceEEEEEccc--e-EEEEEcc-cEEEEe
Confidence 4444555533 4443 3 3457899998843333322 13457899999865 3 4444433 499999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-CcEEEEEeeCCCCceeEeeccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
+++.++. +.++. .+.+...+.++++++.+.++|.-+ + |.|.|||+.+ -+++..+..|.+.+
T Consensus 113 I~~MklL----hTI~t----------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l- 176 (391)
T KOG2110|consen 113 IKDMKLL----HTIET----------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL- 176 (391)
T ss_pred cccceee----hhhhc----------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce-
Confidence 9998765 33332 011245677788888888999642 3 9999999986 88999999999976
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe-EEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~ 419 (501)
-+++|+++|.+||++|+.|+ |||+.+.+|+.+
T Consensus 177 --------------Aalafs~~G~llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 177 --------------AALAFSPDGTLLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred --------------eEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence 68999999999999999998 599999988443
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-14 Score=140.28 Aligned_cols=241 Identities=15% Similarity=0.204 Sum_probs=159.4
Q ss_pred CCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccc
Q 010801 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
+|.+..++.+..|. ..|..++.+ ++++.+|++||.||+|++|+...-.....
T Consensus 1035 ~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------- 1086 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------- 1086 (1431)
T ss_pred CccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc---------------
Confidence 55666777777787 788899988 36779999999999999999875321100
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEEC
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~ 246 (501)
..++..+| ......+.++.+.+.+..+|+| .||.|++.++
T Consensus 1087 --------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1087 --------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred --------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 12333344 3356788999999999999999 9999999998
Q ss_pred CCC-CeeeeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 247 EIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+.. ..........-.........|..-+|...... .++.+...+.|..||++.............
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 841 11111110111122222333444445433324 788889999999999998653321111111
Q ss_pred ecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC---CCcEEE
Q 010801 325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFA 400 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~ 400 (501)
.+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+....... +..+..+| .....+
T Consensus 1195 --hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~--------------i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1195 --HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAP--------------IRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred --ccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccCC--------------cceEEeeccCCCCceEE
Confidence 368999999999999999976 9999999996 88887776433211 13455544 334555
Q ss_pred EE-e-CCCeEEEEecCCCCcceEEEecc
Q 010801 401 TG-S-YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 401 s~-~-~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++ + ..+.|.+|++.+|.+. ..+...
T Consensus 1258 s~~~~~~nevs~wn~~~g~~~-~vl~~s 1284 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQ-TVLWAS 1284 (1431)
T ss_pred EecccCCCceeeeecccCcce-EEEEcC
Confidence 44 4 4788999999998443 555444
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.3e-15 Score=133.99 Aligned_cols=203 Identities=15% Similarity=0.153 Sum_probs=139.8
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
.+++|+.+|..||+|+.||.+|||++...+. +.....|. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence 8899999999999999999999999775443 24566677 88
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC--ccc-ccceecc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHG-YHLEWTE 192 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 192 (501)
|.++.|+ |||+.|++.+.| ..+||+++++......+.. ++. -.+..+-+..+. ..+ ..+...+
T Consensus 189 V~DL~FS--~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~--------~k~---~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 189 VKDLDFS--PDGKFLASIGAD-SARVWSVNTGAALARKTPF--------SKD---EMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred cccceeC--CCCcEEEEecCC-ceEEEEeccCchhhhcCCc--------ccc---hhhhhceecccCCCceEEEEEecCC
Confidence 9999998 899999999999 8999999998544333210 001 111111121111 111 1111223
Q ss_pred CcceEEEeccCceeeee--eEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 193 NMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+.+..|++........ .+.. ..-...|.+++.+++|++++.| .||.|.|++.. .-+.+..+ -+.|...
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~ 326 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGF 326 (398)
T ss_pred CCceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheee
Confidence 34444444433211111 1111 1223579999999999999999 99999999988 33444432 4679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
|+.+.|+|+. +.+++.+.+....+..+...
T Consensus 327 VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 327 VTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 9999999998 99999999999998887653
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=7.1e-15 Score=124.67 Aligned_cols=242 Identities=11% Similarity=0.082 Sum_probs=167.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
++|+|.+|+ ++...++.+.....|.||.......
T Consensus 11 ~pitchAwn--~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 11 EPITCHAWN--SDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred Cceeeeeec--CCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 789999998 8899999999999999998876651
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+...++ ..|...|+.+.|+|..+.|+++ .|..-++|....++.-..+. .+..++...++
T Consensus 45 -------------w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt~ 105 (361)
T KOG1523|consen 45 -------------WEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAATC 105 (361)
T ss_pred -------------ceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEeccceee
Confidence 1122222 6899999999999999999999 99999999985344322211 24568889999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+|.+ +.|++|+.-..|.+|-....+.-.-. +.+. +.+...|.++.|+|++-+|++|+ |+..|
T Consensus 106 V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs-Khik------------kPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 106 VKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS-KHIK------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred EeecCcC-ceEEeccCccEEEEEEEecccceehh-hhhC------------CccccceeeeeccCCcceecccccCccee
Confidence 9999998 99999999999999987764321000 0011 12356899999999999999985 79999
Q ss_pred EEEeeCCCCceeEeecccc-----ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 352 LWDIRMDSTPVATFKIHEH-----LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
||..-- +.+.+-..... +-..++.-+. ..-..+..+.|+|+|..|+-.+.|..+.+=|.....+....+...
T Consensus 172 VfSayI--K~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYI--KGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEee--eccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 997531 11111110000 0000000000 111123789999999999999999999999987765444555444
Q ss_pred cCcccceeecc
Q 010801 427 KNENRKPILQA 437 (501)
Q Consensus 427 ~~~v~~~~~~~ 437 (501)
.-+...+.+..
T Consensus 249 ~lP~ls~~~is 259 (361)
T KOG1523|consen 249 QLPLLSVSWIS 259 (361)
T ss_pred cCCceeeEeec
Confidence 45555555543
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=133.58 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=184.6
Q ss_pred CccccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+++|...-+.|..+|||+|+ |||.+--.|++||+..-.. .|.-|...
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDa-- 94 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDA-- 94 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccc--
Confidence 356688899999999999986 7788999999999886432 24444310
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.-.-.+ .|-..++.-..|++|.+-...+.. ..+...... .-+..+...+ ...
T Consensus 95 --------e~V~feiLs--DD~SK~v~L~~DR~IefHak~G~h-y~~RIP~~G-------------RDm~y~~~sc-Dly 149 (703)
T KOG2321|consen 95 --------EVVDFEILS--DDYSKSVFLQNDRTIEFHAKYGRH-YRTRIPKFG-------------RDMKYHKPSC-DLY 149 (703)
T ss_pred --------cceeEEEec--cchhhheEeecCceeeehhhcCee-eeeecCcCC-------------ccccccCCCc-cEE
Confidence 222222222 333445555566776654433221 111110000 0000000000 000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..| .+..+.-++++. ++.+.-| ......++++..++...+|++| .+|.|..||.+ .+..+.+++.... +.
T Consensus 150 ~~g---sg~evYRlNLEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v~ 220 (703)
T KOG2321|consen 150 LVG---SGSEVYRLNLEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-VN 220 (703)
T ss_pred Eee---cCcceEEEEccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-cC
Confidence 111 122333334442 3334433 4456889999999999999999 89999999999 4444444433321 23
Q ss_pred Ccc-----cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-
Q 010801 265 DLT-----EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 338 (501)
Q Consensus 265 ~~~-----~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~- 338 (501)
.|. ..|+++.|+.+| -.+++|+.+|.+.|||++..+... ...|. ..-+|..+.|.+.
T Consensus 221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~-----~kdh~-----------~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL-----VKDHG-----------YELPIKKLDWQDTD 283 (703)
T ss_pred CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee-----ecccC-----------CccceeeecccccC
Confidence 333 349999999998 999999999999999999976532 22211 1357888999775
Q ss_pred -CCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 -GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 -~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+..+++.+...++|||-.+ +++...+...... ..+|+-|++.+++++-.++.+..|=+..
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEccc
Confidence 4567676669999999986 8888777654442 6899999999999999998888776654
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.4e-14 Score=113.66 Aligned_cols=257 Identities=14% Similarity=0.207 Sum_probs=162.7
Q ss_pred CCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC
Q 010801 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (501)
Q Consensus 22 ~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (501)
+.....+..|.++|+.++|. ..+|.+|+ ||.|+=|.+...+.. ..+++ -++...-. |.
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es---~~~K~--------------lwe~~~P~--~~ 109 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES---LATKR--------------LWEVKIPM--QV 109 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh---ccchh--------------hhhhcCcc--cc
Confidence 33444556799999999998 45677765 699999988754331 00000 01110001 11
Q ss_pred cchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..++. -.|+++-.. |..+-++.++.|+.++-||+++|++....
T Consensus 110 ------~~~ev-PeINam~ld--P~enSi~~AgGD~~~y~~dlE~G~i~r~~---------------------------- 152 (325)
T KOG0649|consen 110 ------DAVEV-PEINAMWLD--PSENSILFAGGDGVIYQVDLEDGRIQREY---------------------------- 152 (325)
T ss_pred ------CcccC-CccceeEec--cCCCcEEEecCCeEEEEEEecCCEEEEEE----------------------------
Confidence 00011 348888776 55566777779999999999999876654
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.+|++-|.++.-......+++| .||++++||.+ +++.++++....
T Consensus 153 ---------------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk 198 (325)
T KOG0649|consen 153 ---------------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYK 198 (325)
T ss_pred ---------------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEecccc
Confidence 7999999999985555678888 99999999999 555666543321
Q ss_pred --CCCCCc-ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 --SNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 --~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.-+..| ...|.+++.+. ..|++| ....+.+|.++..+.. .+|.. ...+..+.|..
T Consensus 199 ~~~~lRp~~g~wigala~~e---dWlvCG-gGp~lslwhLrsse~t----~vfpi--------------pa~v~~v~F~~ 256 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNE---DWLVCG-GGPKLSLWHLRSSEST----CVFPI--------------PARVHLVDFVD 256 (325)
T ss_pred ChhhcCcccCceeEEEeccC---ceEEec-CCCceeEEeccCCCce----EEEec--------------ccceeEeeeec
Confidence 122333 45677777664 346654 4567999999987654 56655 45788888864
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEe
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS 412 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd 412 (501)
+.+++++ .+.|.-|.+. +............. ++..|+.. -++|-.++..+.+.|+.
T Consensus 257 --d~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c---------------~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 257 --DCVLIGGEGNHVQSYTLN--GVLQANIPVESTAC---------------YSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred --ceEEEeccccceeeeeec--cEEEEeccCCccce---------------eeecccCCceEEEEecccceeeeeee
Confidence 3444444 5899999884 44443333322221 34555443 24555667777777763
No 212
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-13 Score=132.65 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=138.1
Q ss_pred cceeEEEEeecCCCCEEEEee---CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s---~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+ .+..|.+|++.+++...+.
T Consensus 199 ~~~~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------------------------- 239 (429)
T PRK03629 199 QPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------------------------- 239 (429)
T ss_pred CceeeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------------------------
Confidence 668899998 8999988764 3457888998877643321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....+...+|+|||+.|+.. .++ .|++||++ .+.... +..+
T Consensus 240 -------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~--------lt~~ 285 (429)
T PRK03629 240 -------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDG 285 (429)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE--------ccCC
Confidence 111223457899999988764 344 58889998 343333 2233
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CCeEEEE--EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
...+....|+|+| +.|+..+. ++...+| |+.+++. +.+.. +........|+|||++|+
T Consensus 286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence 3456789999999 87776665 3444555 5555432 11111 123456788999999988
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe---EEEEecCCC
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG 416 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~---i~iwd~~~~ 416 (501)
... + ..|++||+.+ +. ...+..... . ....|+|||++|+..+.++. +.+++++..
T Consensus 347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~-~---------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFL-D---------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEccCCCceEEEEECCC-CC-eEEeCCCCC-C---------------CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 643 2 4688889874 43 333432111 1 35789999999999887764 677777533
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+.+|...+...+|+|
T Consensus 409 --~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 --FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CeEECccCCCCcCCcccCC
Confidence 3366777888888888876
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.6e-15 Score=132.13 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=139.1
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..++|+++|..++++ .||++|+|+........ ....|...|.++.|+||| ++|++.+.| ..++|+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 679999999999999 99999999976343333 256789999999999999 999999999 8999999998
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCC---CE-EEEE-cC-CcEEEEEeeCCCC-----ceeEeeccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QH-LLSR-DY-MNLKLWDIRMDST-----PVATFKIHE 369 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~-l~~~-~~-~~i~lwd~~~~~~-----~~~~~~~~~ 369 (501)
....... -++. ......+.|+.|+ .+ +++. .. +.|+.||+..... ..+.+..+.
T Consensus 218 ~~~a~~t-~~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AALARKT-PFSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chhhhcC-Cccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 4332110 0111 2457788888776 33 3332 33 7888888754222 111111121
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcccee
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
. +.+++.+++|+++|.|+.||.|.|++..+.+.....-++|...|+.+.|+| +.+. +
T Consensus 283 -------------s---iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P--dsr~-----~ 339 (398)
T KOG0771|consen 283 -------------S---ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP--DSRY-----L 339 (398)
T ss_pred -------------c---ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC--CcCc-----c
Confidence 1 279999999999999999999999999988788788889999999999999 5555 5
Q ss_pred eeecccce
Q 010801 450 TRGLYRQA 457 (501)
Q Consensus 450 ~~~~~~~~ 457 (501)
++.+.+..
T Consensus 340 ~svSs~~~ 347 (398)
T KOG0771|consen 340 ASVSSDNE 347 (398)
T ss_pred cccccCCc
Confidence 55554444
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4e-15 Score=134.88 Aligned_cols=248 Identities=13% Similarity=0.126 Sum_probs=159.7
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
+++.||+ +.|++++|+ .+|.+|++||.|-.+.|||....+....+
T Consensus 44 ~eL~GH~------------GCVN~LeWn--~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------- 88 (758)
T KOG1310|consen 44 AELTGHT------------GCVNCLEWN--ADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------- 88 (758)
T ss_pred hhhcccc------------ceecceeec--CCCCEEeecCCcceEEeecchhcceeeee---------------------
Confidence 6689999 999999997 89999999999999999999865543322
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCe
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
-.+|...|.++.|-| +.+++++| .|..|+++|+...+.
T Consensus 89 ---------------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 89 ---------------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred ---------------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 169999999999987 45678888 999999999984211
Q ss_pred ee--eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 252 CF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~--~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
-- .-......-...|...|..++..|++++.+.++++||+|+-+|++....+......... ... +...--.
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~------l~n-y~~~lie 202 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI------LVN-YNPQLIE 202 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH------HHH-hchhhhe
Confidence 00 00000001245688899999999999999999999999999999986544221100000 000 0001134
Q ss_pred eeEEEEeeCC-CEEEEE-cCCcEEEEEeeCCCCceeEeecccc-------ccccccccC-------CCCCcceeeEEEEc
Q 010801 330 ISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEH-------LRPKLCDLY-------NNDSIFDKFECSVS 393 (501)
Q Consensus 330 i~~~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~s 393 (501)
..++..+|.. .+|++| ++--.++||.+...+....-..+.. .+...++.. ...-+.-.+-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6788899864 567776 4688999995431111110000000 011111100 01111123678999
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 394 GDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|+|.-|...-..-.|+++|+..++.....+
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 998766655555689999998876654433
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=8.3e-16 Score=136.48 Aligned_cols=264 Identities=12% Similarity=0.123 Sum_probs=199.7
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.-+.+.+. .+|.+++.++..|.|-.+|..++++...+
T Consensus 131 GPY~~~yt--rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------------------- 167 (545)
T KOG1272|consen 131 GPYHLDYT--RNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------------------- 167 (545)
T ss_pred CCeeeeec--CCccEEEecCCccceeeeecccceeeeee-----------------------------------------
Confidence 45667776 79999999999999999999998866543
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.-...|.++.|-.+.+++|++....++|||-. +.+... +.. ...|..+.
T Consensus 168 ---------------------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC--------lk~-~~~v~rLe 216 (545)
T KOG1272|consen 168 ---------------------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC--------LKR-HIRVARLE 216 (545)
T ss_pred ---------------------ehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee--------hhh-cCchhhhc
Confidence 12346778888888889999988899999977 333322 232 35688999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 353 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lw 353 (501)
|-|.. -+|++++..|.++.-|+.+|+++. ..... .+.+..|.-+|-+..+-.|. .|+|.+|
T Consensus 217 FLPyH-fLL~~~~~~G~L~Y~DVS~GklVa---~~~t~--------------~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 217 FLPYH-FLLVAASEAGFLKYQDVSTGKLVA---SIRTG--------------AGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ccchh-heeeecccCCceEEEeechhhhhH---HHHcc--------------CCccchhhcCCccceEEEcCCCceEEec
Confidence 99998 899999999999999999997653 11122 35678888888877777884 5999999
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 433 (501)
.... ..++..+..|.+++ .++++.++|+|+||.+.|..++|||+.+...+ .++.. ..+...+
T Consensus 279 SP~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 279 SPNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNL 340 (545)
T ss_pred CCCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcccc
Confidence 9986 77888888898877 78999999999999999999999999987544 33333 4456667
Q ss_pred eeccCCccccCccceeeeecccceeecccc-----C--CcccccccCCCeEEEEEccCCCEEEEeeCCeE
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQAHENSSS-----G--HHELSYNLSSKLLHLAWHPTTNLIACANGNSL 496 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~-----~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~ 496 (501)
+++.. | + ||.+-.+...+|... . ..........+|..+.|+|-+..|.+|...|+
T Consensus 341 s~Sqk--g-l-----LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 341 SLSQK--G-L-----LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ccccc--c-c-----eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 77652 2 2 677777777999211 1 11112234569999999999999999876553
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.4e-14 Score=137.05 Aligned_cols=296 Identities=14% Similarity=0.135 Sum_probs=177.6
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC--CCCCcccccceeccC
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWTEN 193 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 193 (501)
-..+.|+| =...++++...-.|++||.+.++...-+.... .....+....+ ..+...+..+ +.+
T Consensus 1067 pk~~~~hp--f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------~~~t~Vs~l~liNe~D~aLlLta--s~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHP--FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------FPDTRVSDLELINEQDDALLLTA--SSD 1132 (1387)
T ss_pred CceeeecC--CCceeEEcCCcceEEEEecccCceeccccCCC----------CCCCccceeeeecccchhheeee--ccC
Confidence 45567763 34578888767789999999887644332111 11122222222 1222333333 358
Q ss_pred cceEEEeccCce--eeeeeEee------cCCcccceEEEEecCCCCEEEE-EcCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 194 MATKIANVGNSV--HARCQKVY------PHAHDFNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 194 ~~i~~w~~~~~~--~~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
|.|++|+--... ..+.+... +.+..+.=.-+.|......|++ |+-..|+|||.. ..+.+.-+ ..
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~-~E~~~~di------P~ 1205 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH-KEQVVADI------PY 1205 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc-cceeEeec------cc
Confidence 999999865432 11222111 1111111134567665555555 588999999999 44444332 23
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc--eeEEEEeeCCCE-
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQH- 341 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~~- 341 (501)
+.+..|+++.-+-.++++++.|..||.|++||.|..... ..+..+.. |... |..+.+-+.|--
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~-------------h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYRE-------------HNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecc-------------cCCcccceeEEeecCCCcc
Confidence 345567777665444499999999999999999875431 22233433 4444 999999987654
Q ss_pred EEEEc-CCcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 342 LLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
|++|+ +|.|++||++.. ......+..|..... +.+++..+++...+|+|+. +.|+||++... .+
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l 1337 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QL 1337 (1387)
T ss_pred eeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEEEEecChh-hh
Confidence 77775 699999999962 111222222221100 0178999999999999999 99999998744 22
Q ss_pred eEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC-eEEE
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 498 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i 498 (501)
..++.+ + +.+ -.-...+.+++|||-.-+||+|+.| .+.|
T Consensus 1338 -~~~k~n----------~---~F~--------------------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1338 -NIIKYN----------P---GFM--------------------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred -cccccC----------c---ccc--------------------------cCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 222211 1 111 0011255899999999999999855 4777
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 1378 Ys 1379 (1387)
T KOG1517|consen 1378 YS 1379 (1387)
T ss_pred ee
Confidence 75
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.2e-13 Score=115.91 Aligned_cols=266 Identities=13% Similarity=0.109 Sum_probs=158.2
Q ss_pred ccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
+..|+|++|-| .++.||+|+..| |.||..+..... .+.++.+ .. ....+..-.||
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~---~r~~~~~-s~---------~~~qvl~~pgh---------- 195 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA---NRNIRMM-ST---------HHLQVLQDPGH---------- 195 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCccccc---ccccccc-cc---------cchhheeCCCC----------
Confidence 56899999999 457889998755 899987632211 0000000 00 00001112334
Q ss_pred ccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|++++|. +||..+++++ .|..|+|||+.++..+.+.
T Consensus 196 ---~pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------------------------ 234 (445)
T KOG2139|consen 196 ---NPVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------------------------ 234 (445)
T ss_pred ---ceeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCccccc------------------------------------
Confidence 569999997 7899999998 6789999999998865543
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..-.+.+.-+.|+|||..|.++ -|+..++|+........+ -.-..+
T Consensus 235 -------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsg 281 (445)
T KOG2139|consen 235 -------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSG 281 (445)
T ss_pred -------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCC
Confidence 1224567789999999999999 999999997663332222 111234
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccc--c------ccc-eeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--H------SAR-ILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~------~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.|...+|+|+|..+|++.+.. -++|.+.-..... . ... +.+. ++... ...-.--.+.+.+++|.|.|
T Consensus 282 rvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL-~e~ti-~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADL-QEVTI-CAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccc-hhhhh-hcCcccccCccceeeECCCC
Confidence 899999999994455555443 3445443221110 0 000 0000 00000 00001123678999999999
Q ss_pred CEEEEE---c----C--CcEEEEEeeCCCCceeEee--ccccccccccccCCCCCcceeeEEEEcC---CCcEEEEEeCC
Q 010801 340 QHLLSR---D----Y--MNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYS 405 (501)
Q Consensus 340 ~~l~~~---~----~--~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~s~~~d 405 (501)
.+||+. . + ..|.+||.+. .+...+. +...... . .-++|+| ++.+|..+-..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~--sp~vels~cg~i~ge~----------P---~~IsF~pl~n~g~lLsiaWsT 422 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRK--SPPVELSYCGMIGGEY----------P---AYISFGPLKNEGRLLSIAWST 422 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccc--cCceEEEecccccCCC----------C---ceEEeeecccCCcEEEEEecc
Confidence 999974 1 1 5677888873 3333332 1111100 0 2466665 57777777777
Q ss_pred CeEEEEecC
Q 010801 406 NLLRIFSHG 414 (501)
Q Consensus 406 g~i~iwd~~ 414 (501)
|.+.-|++.
T Consensus 423 Griq~ypl~ 431 (445)
T KOG2139|consen 423 GRIQRYPLT 431 (445)
T ss_pred CceEeeeeE
Confidence 888777654
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=3.7e-12 Score=108.35 Aligned_cols=163 Identities=16% Similarity=0.227 Sum_probs=115.2
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC-cEEEEEe-CCCeEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSS-SRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~-~dg~i~ 293 (501)
....+|.++.+.++ .|++.-.+.|++|.....-+.+..++.. .......+ ..|... .+||.-+ .-|.|+
T Consensus 92 ~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGlC~--~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGLCS--LCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----cCCCceEe--ecCCCCceEEEcCCCccceEE
Confidence 34568888888765 6777778899999988544444443221 11112233 333321 4555544 368999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C-cEEEEEeeCCCCceeEeeccccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~-~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|-|+...... ....+..|...|.+++.+-+|..+|+++. | -|||||..+ +.++++++-....
T Consensus 163 i~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 163 IVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDR 226 (346)
T ss_pred EEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCch
Confidence 9998765321 12234568999999999999999999975 4 589999996 8888888644433
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
. ++.+++|||++.+||+.|+.|+|+||.+...
T Consensus 227 A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 A-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred h-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2 1279999999999999999999999998764
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=130.11 Aligned_cols=305 Identities=12% Similarity=0.101 Sum_probs=210.6
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.....|.+|. +.|+.|.|+ ..|..|++++.|..|.+||...+..+...
T Consensus 133 ~l~~kL~~H~------------GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------ 180 (559)
T KOG1334|consen 133 RLQKKLNKHK------------GCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------ 180 (559)
T ss_pred hhhhcccCCC------------Cccceeeec--ccCceeeccCccceEEeehhhccCccccc------------------
Confidence 3445677888 999999997 78999999999999999999877643321
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..+|...|....|-| +...++++ .||.+++=.+..
T Consensus 181 ------------------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 181 ------------------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred ------------------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 258888888877866 34566666 999999987764
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.+.+..+ ..+..|.++|.-++..|+.+..|++++.|+.+.-+|++.+....... .. ...... .-
T Consensus 219 t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr-~~~~~~-------~v 282 (559)
T KOG1334|consen 219 TGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CR-EADEKE-------RV 282 (559)
T ss_pred ccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee---ee-ccCCcc-------ce
Confidence 5544332 24678999999999999998899999999999999999875432111 11 000000 12
Q ss_pred ceeEEEEeeCCC-EEEEE-cCCcEEEEEeeCCCC-----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 329 SISDIKFANDGQ-HLLSR-DYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 329 ~i~~~~~sp~~~-~l~~~-~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
....++..|... .+++| .|.-+++||.+.-.+ .+..+..+.. - .+....|++++++.++.-|.+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~-~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------V-EDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc--------c-ccCcccceeEEecCCccceee
Confidence 578888998665 56665 468899999864111 1222221111 0 133344589999977655555
Q ss_pred EeCCCeEEEEecCC--C----------CcceEEEecccCc--ccceeeccCCccccCccceeeeecccce-eec--cccC
Q 010801 402 GSYSNLLRIFSHGV--G----------SAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG 464 (501)
Q Consensus 402 ~~~dg~i~iwd~~~--~----------~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~ 464 (501)
.-.|-.|+++.-.- | ......+++|.+. |..+-|.-. ...+ +++|+.-|. -+| +.++
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhH
Confidence 55667789984322 2 1122347888764 666666653 3344 788888888 999 5556
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
++..+.+-..-|+||.=||--.+||+++ +-.|.||..
T Consensus 428 ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred HHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 6666666666899999999999999988 555999973
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.3e-12 Score=126.26 Aligned_cols=211 Identities=12% Similarity=0.045 Sum_probs=133.6
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRFS--PNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEEC--CCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 779999998 78999888763 46899999987764332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
..+...+...+|+|||+.|+. . .++ .|.+||+. ++.... +..+
T Consensus 242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~ 288 (435)
T PRK05137 242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS 288 (435)
T ss_pred ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence 123345567899999998764 3 454 47777887 343333 3344
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. +| .|.++|+..++.. ++... ...+....|+|||++|+
T Consensus 289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCCEEE
Confidence 4556778999999 77776664 33 5777887665332 11111 23466788999999998
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC------CeEEEEec
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH 413 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~ 413 (501)
... + ..|.+||+. +.....+.... .. ....|+|||++|+..+.+ ..++++|+
T Consensus 350 ~~~~~~~~~~i~~~d~~--~~~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPD--GSGERILTSGF-LV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEcCCCceEEEEEECC--CCceEeccCCC-CC---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 653 2 367788875 33333332211 11 468999999998765543 25777887
Q ss_pred CCCCcceEEEecccCcccceeecc
Q 010801 414 GVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 414 ~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
..+.. ..+.. ...+...+|+|
T Consensus 412 ~g~~~--~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNE--REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCce--EEccC-CCCccCcccCC
Confidence 65532 33332 23344555554
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.5e-13 Score=127.72 Aligned_cols=214 Identities=13% Similarity=0.130 Sum_probs=132.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+.+.+|+ |+|+.|+..+.+ ..|.+||+.+++...+.
T Consensus 196 ~~v~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------------------------- 236 (427)
T PRK02889 196 EPIISPAWS--PDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------------------------- 236 (427)
T ss_pred CCcccceEc--CCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 678899998 789999887642 46999999887644321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.....+...+|+|||+.|+. . .++...||.++........ +..+..
T Consensus 237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~ 284 (427)
T PRK02889 237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG 284 (427)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence 11233457899999998875 4 6777666655422222221 333444
Q ss_pred ceEEEEEecCCCcEEEEEeC-CCeEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
......|+||| +.|+..+. +|...+|.+. +++. +.+.. +........|+|||++|+..
T Consensus 285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~-------------~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-----QRVTF-------------TGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-----EEEec-------------CCCCcCceEECCCCCEEEEE
Confidence 55678899999 77665554 5666777654 3321 11111 01234467899999999865
Q ss_pred c-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-e--EEEEecCCCCc
Q 010801 346 D-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L--LRIFSHGVGSA 418 (501)
Q Consensus 346 ~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~--i~iwd~~~~~~ 418 (501)
+ + ..|++||+.+ ++. ..+...... ....|+|||++|+..+.++ . +.+.++. + .
T Consensus 346 s~~~g~~~I~v~d~~~-g~~-~~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~ 405 (427)
T PRK02889 346 SRVGGAFKLYVQDLAT-GQV-TALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-R 405 (427)
T ss_pred EccCCcEEEEEEECCC-CCe-EEccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-C
Confidence 4 2 3699999875 443 333322111 3689999999988777543 3 4555553 3 3
Q ss_pred ceEEEecccCcccceeecc
Q 010801 419 GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+.+.+...+++|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 3455555666666667766
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.4e-13 Score=127.15 Aligned_cols=216 Identities=12% Similarity=0.131 Sum_probs=136.3
Q ss_pred CcccceEEEEecCCCCEEEEE----cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg 290 (501)
.+...+.+.+|+|||+.|+.. .+..|.+|++.. ++...+. .+.+ .+..++|+||| +.|+.. +.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~-----~~~~---~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVA-----SFPR---HNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEcc-----CCCC---CcCCeEECCCC-CEEEEEEcCCC
Confidence 345678899999999988863 245799999984 4333221 1223 34468999999 766654 4455
Q ss_pred --eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee
Q 010801 291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 291 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 366 (501)
.|.+||+.+++.. +.... ...+....|+|||+.|+..++ +...||.+...+.....+.
T Consensus 266 ~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 266 SLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 5888999876432 22111 235678999999998886643 4555554432233344443
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
...... ....|+|||++|+..+.+ ..|.+||+.++.. ..+... .......++| +|+.
T Consensus 328 ~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~Sp--DG~~ 387 (429)
T PRK03629 328 WEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTDT-FLDETPSIAP--NGTM 387 (429)
T ss_pred cCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCCC-CCCCCceECC--CCCE
Confidence 322211 368999999998876543 3588899987743 333322 2234667877 8887
Q ss_pred Cccceeeeecccce--eec--cccC-CcccccccCCCeEEEEEccC
Q 010801 444 SSLSNLTRGLYRQA--HEN--SSSG-HHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 444 ~~~~~l~~~~~~~~--~iw--~~~~-~~~~~~~~~~~i~~~~~sp~ 484 (501)
++..+.++. .++ ..++ ....+..+...+...+|+|-
T Consensus 388 -----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 388 -----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 777777665 333 4433 34445567778889999983
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=1.3e-13 Score=116.38 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=103.2
Q ss_pred EEEEecCCCCEEEEE-c---C-------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE--eC
Q 010801 222 NSISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS 288 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~ 288 (501)
..+.|+++|..|+.- . | +...+|.++........+. + ...++|.+++|+|+| +.|++. ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l-~~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----L-KKEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----c-cCCCceEEEEECcCC-CEEEEEEccC
Confidence 357899999888763 2 1 3456666643333333221 2 134569999999999 665544 45
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCceeE
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~~~~ 364 (501)
++.|.+||++.. .. ..+. ...++.+.|+|+|++|++++ .|.|.+||++. .+.+..
T Consensus 82 ~~~v~lyd~~~~-~i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 82 PAKVTLYDVKGK-KI----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred CcccEEEcCccc-Ee----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 789999999632 11 2222 25678999999999999864 27899999984 666666
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 414 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 414 (501)
..... . +.++|+|||++|+++.. |+.++||+..
T Consensus 141 ~~~~~-~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEHSD-A----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cccCc-E----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 54322 2 68999999999998874 7889999986
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.6e-13 Score=127.33 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=133.8
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|+.|+..+. +..|.+|++.+++...+.
T Consensus 204 ~~v~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------------------------- 244 (433)
T PRK04922 204 EPILSPAWS--PDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------------------------- 244 (433)
T ss_pred CccccccCC--CCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------------------------
Confidence 668899998 78999998763 346999999877643321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.......+.+|+|||+.++. . .++ .|++||+. .+.... +..+
T Consensus 245 -------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~ 290 (433)
T PRK04922 245 -------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH 290 (433)
T ss_pred -------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence 11223346799999998764 3 444 69999998 344332 3334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CCe--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
......++|+|+| +.|+..+. +|. |.++|+.+++.. + +.. +......++|+|||++|+
T Consensus 291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~-lt~-------------~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----R-LTF-------------QGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEE
Confidence 4445678999999 77776654 454 556666555321 1 111 012345689999999998
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCC
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~ 416 (501)
..+ + ..|.+||+.+ ++.. .+.... .. ....|+|||++|+..+.+ +.|.++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLST-GSVR-TLTPGS-LD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCC-CCeE-ECCCCC-CC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 653 2 3699999874 4433 333211 11 357999999988876653 45777777543
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+...+...+++|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 3345555555555555554
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1e-11 Score=113.58 Aligned_cols=313 Identities=11% Similarity=0.125 Sum_probs=190.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++..++|++|+++|.+. +..++|++..+++. .+....
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~--------------------------~lt~~~------------- 73 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV--------------------------VLCVEL------------- 73 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE--------------------------EEEecc-------------
Confidence 34578899999999998865 67899999887632 111111
Q ss_pred cccceeEEEEeecCCCCEEEEe-----eC-----CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~-----s~-----d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..++++.|+ |-+.+|.+- .. ...+++|+++++.....+ .+....+ ....++.+
T Consensus 74 --~~~~~L~fS--P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~-----------q~k~Q~~--W~~qfs~d 136 (566)
T KOG2315|consen 74 --KKTYDLLFS--PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI-----------QKKMQNG--WVPQFSID 136 (566)
T ss_pred --ceeeeeeec--ccccccccccccccccCCCCCCCceeeeeeccceehhhe-----------ehhhhcC--cccccccc
Confidence 237888997 677777662 12 235779999884322211 1111112 12222222
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEE---E---cCCeEEEEECCCCCeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVS---A---DDLRINLWNLEISDQCF 253 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~---~---~d~~i~iwd~~~~~~~~ 253 (501)
....+ ....+.+.+++...- ..... .-|...|..+.++|.+ ..+++ + .-..|+||.....+ ..
T Consensus 137 Esl~a---rlv~nev~f~~~~~f--~~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~ 207 (566)
T KOG2315|consen 137 ESLAA---RLVSNEVQFYDLGSF--KTIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QH 207 (566)
T ss_pred hhhhh---hhhcceEEEEecCCc--cceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-cc
Confidence 22211 123667888888761 11222 2356788888998863 34444 1 34679999877222 11
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC--C---------CeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
..+..+ ++ ....-..+.|++-|..+|+.++. | .++++.++...+. ....
T Consensus 208 ~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V~L---------- 267 (566)
T KOG2315|consen 208 QPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------SVPL---------- 267 (566)
T ss_pred chhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------EEec----------
Confidence 111000 11 11223467899887445555443 2 3577777763221 1111
Q ss_pred eeecccceeEEEEeeCCCEEEEE-c-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
.-.++|.++.|+|+|+-+++. + . -.+.|||++ +.++..+..... +++-|+|.|++|
T Consensus 268 --~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR-----------------N~~~fnp~g~ii 326 (566)
T KOG2315|consen 268 --LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR-----------------NTAFFNPHGNII 326 (566)
T ss_pred --CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc-----------------cceEECCCCCEE
Confidence 014799999999999877765 3 3 899999997 788777653333 579999999999
Q ss_pred EEEeC---CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCe
Q 010801 400 ATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKL 476 (501)
Q Consensus 400 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i 476 (501)
+.+|- -|.|-|||+.+.+.+ ..+++. .-
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~------------------------------------------------~t 357 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLI-AKFKAA------------------------------------------------NT 357 (566)
T ss_pred EEeecCCCCCceEEEeccchhhc-cccccC------------------------------------------------Cc
Confidence 88776 488999999985333 111100 22
Q ss_pred EEEEEccCCCEEEEee-------CCeEEEEe
Q 010801 477 LHLAWHPTTNLIACAN-------GNSLFFHY 500 (501)
Q Consensus 477 ~~~~~sp~~~~la~~~-------~~~~~i~~ 500 (501)
+-..|+|||.++.+++ +|++.||.
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 4679999999998887 67888885
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3e-13 Score=117.96 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=170.7
Q ss_pred cccceEEEEEccCCC--EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~--~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....|+.++|.-+++ .|...+.|..+..+.+...... + +..-........
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-------s--------------~~~~~~~~~l~~------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-------S--------------SLDDAKTVSLGT------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccc-------c--------------cccccccccccc-------
Confidence 457788888887653 3333336667777776655432 0 000011222223
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|..++.. +..|++|-.+|.+.+|....+.....
T Consensus 106 -----~~I~gl~~~----dg~Litc~~sG~l~~~~~k~~d~hss------------------------------------ 140 (412)
T KOG3881|consen 106 -----KSIKGLKLA----DGTLITCVSSGNLQVRHDKSGDLHSS------------------------------------ 140 (412)
T ss_pred -----ccccchhhc----CCEEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence 677777763 45778888899999999885431100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cC--CeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+.. ..-...+..+.-++....+ ++| .. ..+++||++...+...--.++...+.
T Consensus 141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG 198 (412)
T ss_pred --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc
Confidence 0000 0112344455555544444 446 66 88999999954333322111111111
Q ss_pred -CcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 265 -DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 265 -~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.-.-+++++.|-+. . +.|++++.-+.+++||.+.++... ..+.. -..+++++...|+|++
T Consensus 199 LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPSGNF 261 (412)
T ss_pred ceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCCCcE
Confidence 11235678888776 5 899999999999999999775432 33332 1468999999999999
Q ss_pred EEEEcC-CcEEEEEeeCCCCceeE-eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 342 LLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
|++|.. +.+..||++. ++.... +.+-.+.+ +++..+|.+++|+++|-|..|||+|+++.+.+
T Consensus 262 Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999976 9999999996 666555 66666654 78999999999999999999999999985433
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1e-12 Score=126.28 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=133.0
Q ss_pred CcccceEEEEecCCCCEEEEE--cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
.+...+.+.+|+|||+.|+.. .+ ..|.+||+.. ++...+ ......+...+|+|+| +.|+ +.+.+|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~g 262 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRVV--------ANFKGSNSAPAWSPDG-RTLAVALSRDG 262 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEEe--------ecCCCCccceEECCCC-CEEEEEEccCC
Confidence 455678889999999998875 32 4699999984 433322 2222345678999999 6665 567788
Q ss_pred eEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee
Q 010801 291 FVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 291 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 366 (501)
...+|.+. .+.. +.+.. +........|+|||+.|+..++ +...+|.+...+.....+.
T Consensus 263 ~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 263 NSQIYTVNADGSGL-----RRLTQ-------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CceEEEEECCCCCc-----EECCC-------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 77776553 3321 12211 1234566789999998886543 6677776653233333332
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
...... ...+|+|||++|+..+.++ .|.+||+.+++.. .+... .......|+| +++.
T Consensus 325 ~~g~~~---------------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~sp--dg~~ 384 (427)
T PRK02889 325 FTGSYN---------------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAP--NGRY 384 (427)
T ss_pred cCCCCc---------------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECC--CCCE
Confidence 221111 3588999999998777654 6999999887432 33222 2346778888 7776
Q ss_pred Cccceeeeecccce--eec--cccCCcc-cccccCCCeEEEEEccC
Q 010801 444 SSLSNLTRGLYRQA--HEN--SSSGHHE-LSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 444 ~~~~~l~~~~~~~~--~iw--~~~~~~~-~~~~~~~~i~~~~~sp~ 484 (501)
|+..+.++. .++ ..++... ....+...+...+|+|-
T Consensus 385 -----l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 385 -----ILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -----EEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 666665554 455 2233222 23334566777888874
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.3e-13 Score=128.80 Aligned_cols=206 Identities=12% Similarity=0.088 Sum_probs=130.7
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|...+.+.+|+|||+.||..+.+ ..|.+||+.+++. ..+..+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~----- 247 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR----- 247 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC-----
Confidence 466789999999999999987633 4699999987643 1222222
Q ss_pred ccccccccceeEEEEeecCCCCEEEE-eeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s-~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+....++|+ |+|+.++. .+.++ .|.+||+.+++...+
T Consensus 248 -------g~~~~~~~S--pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------- 287 (433)
T PRK04922 248 -------GINGAPSFS--PDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------- 287 (433)
T ss_pred -------CCccCceEC--CCCCEEEEEEeCCCCceEEEEECCCCCeEEC-------------------------------
Confidence 334577897 78887764 45554 588888887764332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCe--EEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~ 259 (501)
..+.......+|+|||+.|+.+ .++. |.++++. ++....+.
T Consensus 288 -------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt--- 332 (433)
T PRK04922 288 -------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLT--- 332 (433)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEee---
Confidence 2233334567999999988765 4554 6666665 33332221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
. +......++|+|+| +.|+..+.++ .|.+||+.+++.. .+.. ........|+
T Consensus 333 ---~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~s 387 (433)
T PRK04922 333 ---F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSFA 387 (433)
T ss_pred ---c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceEC
Confidence 1 22234568999999 8777765433 6899999776432 2211 1133456899
Q ss_pred eCCCEEEEEc-C---CcEEEEEeeCCCCceeEeecccc
Q 010801 337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 337 p~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|||++|+..+ + ..|+++++. +.....+..+..
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 9999887653 2 457777764 555566654433
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1.6e-11 Score=114.34 Aligned_cols=322 Identities=12% Similarity=0.086 Sum_probs=173.4
Q ss_pred CEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 45 DYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 45 ~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
+++ ++-..+|.|.|.|..+.+. +..+.... +.-..+.|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~s- 45 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKFS- 45 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE-T-
T ss_pred cEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEec-
Confidence 444 4455689999999887653 34554432 222345675
Q ss_pred cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 124 ~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
+||+++++++.||.|.++|+.+++......
T Consensus 46 -~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~------------------------------------------------- 75 (369)
T PF02239_consen 46 -PDGRYLYVANRDGTVSVIDLATGKVVATIK------------------------------------------------- 75 (369)
T ss_dssp -T-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------------------------------------------
T ss_pred -CCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------------------------------------------
Confidence 899999999999999999999988665431
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
-.....++++++||++++++ ..+.+.++|.+ ..+.++.+.............+.++..+|..+.
T Consensus 76 -------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 76 -------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred -------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCE
Confidence 12345779999999999886 79999999998 444555443221112224556788888888723
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCC
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 359 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~ 359 (501)
+++..-+.+.|.+.|....+... .+.+.. ........|+|+++|++++. .+.|-++|.++ +
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~ 204 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-G 204 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-T
T ss_pred EEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-c
Confidence 44444455888888876653211 122222 34577889999999987763 38999999875 6
Q ss_pred CceeEeecccccccc-ccccCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 360 TPVATFKIHEHLRPK-LCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
+.+..+.....+-+. ...+.+.. ....|.. .+...++.-....+.+||..+. ...++++....+ .-+..+
T Consensus 205 k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 205 KLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp EEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---EE--
T ss_pred eEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ceeecC
Confidence 665554322111000 00000000 1122322 2233322222335567887766 344777766555 555666
Q ss_pred cCCccccCccceeeee----cccce-eeccccCCcc--cc-cccCCCeEEEEEccCCCEEEEee--CC-eEEEEeC
Q 010801 437 AAPRARRSSLSNLTRG----LYRQA-HENSSSGHHE--LS-YNLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA 501 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~----~~~~~-~iw~~~~~~~--~~-~~~~~~i~~~~~sp~~~~la~~~--~~-~~~i~~~ 501 (501)
| ++++ +... ...+. .+++...... .. ......+.++.|++||+.+-++. .+ .+.||++
T Consensus 278 P--~s~~-----vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 278 P--DSRY-----VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp T--T-SE-----EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred C--CCcc-----EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 6 5554 3333 22233 5554443211 11 12233589999999999765554 44 6888864
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3.7e-14 Score=126.15 Aligned_cols=256 Identities=16% Similarity=0.199 Sum_probs=181.5
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-..+.+.++.+|+.|+.|+..|.|..+|+.+++.. ..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v------------- 169 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV------------- 169 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------
Confidence 34678999999999999999999999999988653 22222
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+.|.++.|. .+.++|+++ ..+.+.|||-.+-++.++.
T Consensus 170 ~Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHClk--------------------------------------- 207 (545)
T KOG1272|consen 170 METVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCLK--------------------------------------- 207 (545)
T ss_pred hhhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeehh---------------------------------------
Confidence 2679999997 666677666 4578999997765544432
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
. ...|..+.|-|..-+|+++ ..|.++.-|+.. ++.+.. +..-.+.+.
T Consensus 208 -----------------------~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~-------~~t~~G~~~ 255 (545)
T KOG1272|consen 208 -----------------------R-HIRVARLEFLPYHFLLVAASEAGFLKYQDVST-GKLVAS-------IRTGAGRTD 255 (545)
T ss_pred -----------------------h-cCchhhhcccchhheeeecccCCceEEEeech-hhhhHH-------HHccCCccc
Confidence 1 2467788999988777887 899999999994 444432 444566778
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
.++-+|-+ ..+-+|..+|+|.+|.....+... ++ ..|.++|.++++.++|+|+++.+ |..+
T Consensus 256 vm~qNP~N-aVih~GhsnGtVSlWSP~skePLv---Ki--------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 256 VMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLV---KI--------------LCHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred hhhcCCcc-ceEEEcCCCceEEecCCCCcchHH---HH--------------HhcCCCcceEEECCCCcEEeecccccce
Confidence 88889988 899999999999999988765442 22 23578999999999999999864 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec-CCCC-cceEEEec--c
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH-GVGS-AGGITVEA--G 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~--~ 426 (501)
+|||+++ ...+.++... ... ..+++|..| +|| .+....|.||.- -.+. .....+-. .
T Consensus 318 kIWDlR~-~~ql~t~~tp-~~a---------------~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~ 378 (545)
T KOG1272|consen 318 KIWDLRN-FYQLHTYRTP-HPA---------------SNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRC 378 (545)
T ss_pred eEeeecc-ccccceeecC-CCc---------------ccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhcc
Confidence 9999997 4444444431 111 468888665 333 344457899953 2211 11122222 2
Q ss_pred cCcccceeeccCC
Q 010801 427 KNENRKPILQAAP 439 (501)
Q Consensus 427 ~~~v~~~~~~~~~ 439 (501)
..+|..+.|.|-.
T Consensus 379 ~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 379 GGPVEDLRFCPYE 391 (545)
T ss_pred CcccccceeccHH
Confidence 3477777777753
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=8.8e-15 Score=138.96 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=200.7
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
++.+.||. ..|+|+.|. ..|.++++|+.|..++||..+++.+....
T Consensus 183 ikrLlgH~------------naVyca~fD--rtg~~Iitgsdd~lvKiwS~et~~~lAs~-------------------- 228 (1113)
T KOG0644|consen 183 IKRLLGHR------------NAVYCAIFD--RTGRYIITGSDDRLVKIWSMETARCLASC-------------------- 228 (1113)
T ss_pred HHHHHhhh------------hheeeeeec--cccceEeecCccceeeeeeccchhhhccC--------------------
Confidence 34567777 889999995 78999999999999999998887755433
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.||.+.|+.++.+.+..+++++ .|..|++|.+. .+..
T Consensus 229 -----------------------------------------rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~p 266 (1113)
T KOG0644|consen 229 -----------------------------------------RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAP 266 (1113)
T ss_pred -----------------------------------------CCCccccchhccchhhhhhhhcccCceEEEEecC-CCch
Confidence 7999999999999888888888 99999999999 5555
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+.+ +.+|++.|++++|+|-. +.+.||++++||.+-.. ..+.. .++... -...+.+
T Consensus 267 vsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~p--rp~~~~-----~~~~~~s 321 (1113)
T KOG0644|consen 267 VSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVP--RPLKFT-----EKDLVDS 321 (1113)
T ss_pred HHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCC--CCCCcc-----cccceee
Confidence 554 78999999999999963 66889999999998211 11111 000000 0245777
Q ss_pred EEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEE
Q 010801 333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI 410 (501)
Q Consensus 333 ~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~i 410 (501)
+.|..++.-++++++ +.-..|.... +..+.... .-+.++.+ ..+.+++-.+-.+.+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l---------------if~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL---------------IFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred eeccccccccccccCCcccccchhhH-------hhhhccce---------------EEEeccccccccceeeeeeeEeee
Confidence 778888888888864 7777776542 11111110 01222222 246667778889999
Q ss_pred EecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccc--ccccCCCeEEEEEccCCCE
Q 010801 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL--SYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~--~~~~~~~i~~~~~sp~~~~ 487 (501)
|++.+| .+.+.+.+|...+..+.+.|- +.++ .-+.+.||+ .||+..+.... .......+.+-+||+||..
T Consensus 380 wnl~~g-~l~H~l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 380 WNLYTG-QLLHNLMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS 452 (1113)
T ss_pred eecccc-hhhhhhcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence 999999 555899999999999999996 6666 688899999 99955433222 1222456668899999998
Q ss_pred EEEee-CCeEEEEe
Q 010801 488 IACAN-GNSLFFHY 500 (501)
Q Consensus 488 la~~~-~~~~~i~~ 500 (501)
++..- .+.+||+.
T Consensus 453 ~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 453 IALSDDHGQLYILG 466 (1113)
T ss_pred EecCCCCCceEEec
Confidence 88766 45688764
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=4.2e-10 Score=105.14 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=106.5
Q ss_pred ccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecC------CCCCCCcccceEEEEEecCCCcEEEEEeC-
Q 010801 218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSSS- 288 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~- 288 (501)
......++++|++++|+++ .+|.|.++++...+......... +...........++.++|++ +++++...
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecC
Confidence 3455678999999999988 79999999998655443332111 00111223456889999999 76666543
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCcee---
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA--- 363 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~--- 363 (501)
...|.+|++............+.. .....-..++|+|+++++.+.. .+.|.++++......+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 568999999776421111111111 0135678999999999987764 39999999983222222
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCC
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 415 (501)
.+....... ... .....++++|||++|.+.. .++.|.+|+++.
T Consensus 233 ~~~~~~~~~-------~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 233 TISTLPEGF-------TGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEESCETTS-------CSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred Eeeeccccc-------ccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 222111100 000 0126899999999887655 578899999943
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=5e-13 Score=121.24 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=77.5
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|...+|+|||++||+. .||.++|||.. ....+.+ +...-+...|++|+||| ++|++|++|..|.||.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEE
Confidence 3488999999999999998 99999999999 3333332 33445678999999999 9999999999999999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+..++++ -.+ .+|..+|+.++|.|
T Consensus 361 f~erRVV------ARG-----------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVV------ARG-----------QGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEE------Eec-----------cccccceeeEeecc
Confidence 9887543 223 46889999999997
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=8e-12 Score=120.84 Aligned_cols=215 Identities=13% Similarity=0.054 Sum_probs=132.3
Q ss_pred CCcccceEEEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE-EEEeCC
Q 010801 215 HAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR 289 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~d 289 (501)
..+...+.+.+|+|||+.|+.. . +..|.+||+.+ ++... +..+...+...+|+|+| +.| ++.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence 3566788999999999988774 2 46899999984 43332 23344566788999999 655 455656
Q ss_pred Ce--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC----CcEEEEEeeCCCCcee
Q 010801 290 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 363 (501)
Q Consensus 290 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~----~~i~lwd~~~~~~~~~ 363 (501)
+. |.+||+.++... .+.. +........|+|||+.|+..++ ..|+++|+. +....
T Consensus 268 g~~~Iy~~d~~~~~~~-----~Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-----RLTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPR 327 (435)
T ss_pred CCceEEEEECCCCceE-----EccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeE
Confidence 55 677788776432 1221 1234567899999999886643 367777875 33344
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 440 (501)
.+....... ....|+|||++|+..+.+ ..|.+||+..+.. ..+.. ...+....|+| +
T Consensus 328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~sp--D 387 (435)
T PRK05137 328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAP--N 387 (435)
T ss_pred EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECC--C
Confidence 444332221 468899999999876643 3688888865532 22322 23466778888 6
Q ss_pred cccCccceeeeecccc-----eeec--cccCCcccccccCCCeEEEEEccC
Q 010801 441 ARRSSLSNLTRGLYRQ-----AHEN--SSSGHHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 441 ~~~~~~~~l~~~~~~~-----~~iw--~~~~~~~~~~~~~~~i~~~~~sp~ 484 (501)
|+. ++....++ ..+| +.+............+...+|+|-
T Consensus 388 G~~-----i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 388 GRV-----IMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCE-----EEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 766 55543322 2455 333222222223344666778774
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=123.15 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=131.5
Q ss_pred cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc--
Q 010801 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-- 303 (501)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-- 303 (501)
.+.+--++.| .-|.|.+.|... ....+.+... ..-....|+++.|-|.++.+++++-.+|.+.+||.......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 4567778888 889999988763 3322221111 11123679999999988788999999999999987331100
Q ss_pred --cc---c---cceeecc-cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccc
Q 010801 304 --DH---S---ARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 304 --~~---~---~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
.. . ..+.... .....+...+.--.+.|...+|+|||++||+.+ ||.+||||..+ .+++..++.--+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 00 0 0011110 000011111122245899999999999999875 69999999986 66665555433332
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
.+++|||||+||++|++|..|.||.+... .++..=++|+++|..++|-|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 69999999999999999999999999877 56688899999999999985
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=2.2e-12 Score=108.97 Aligned_cols=117 Identities=14% Similarity=0.292 Sum_probs=87.2
Q ss_pred cccceEEEEecCCCCEEEE--E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CC
Q 010801 217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 290 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg 290 (501)
..+.|.+++|+|+|+.|++ | .++.|.+||++ ...... + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 3456999999999998765 5 67899999997 333322 2 24567889999999 99988864 47
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-------CCcEEEEEeeCCCCcee
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-------~~~i~lwd~~~~~~~~~ 363 (501)
.|.+||.++.+.. ...+. ..++.++|+|||++|+++. |+.++||+.. ++.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999976543 22221 3578999999999999762 5889999985 66665
Q ss_pred Eee
Q 010801 364 TFK 366 (501)
Q Consensus 364 ~~~ 366 (501)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 543
No 237
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.9e-10 Score=99.28 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=114.2
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc----------eEEEEEecCCCcEEEEEe
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSS 287 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------v~~v~~~p~~~~~l~~~~ 287 (501)
+-+.++++++|++++++ ..|.|.++-++..+.....+. +..|.+. +....+.|++ ++|++.+
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~D 163 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPD 163 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEee
Confidence 33778999999999998 789999999975554443322 1122222 7888999999 8888776
Q ss_pred C-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE
Q 010801 288 S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 288 ~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~ 364 (501)
. --.|.+|++..+.+.......+.. ...-..|.|+|++++...-. +++|-+|........+..
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred cCCceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 5 357999999987655322222222 35678999999999887664 499999999753344444
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
++.+..... ++..... .-.+..++||++|.+... ...|.+|.+...
T Consensus 230 lQ~i~tlP~---dF~g~~~---~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 230 LQTIDTLPE---DFTGTNW---AAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred eeeeccCcc---ccCCCCc---eeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 443322110 0111111 157899999999987654 457888888754
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=4e-11 Score=111.68 Aligned_cols=269 Identities=12% Similarity=0.145 Sum_probs=155.6
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
-..+.|+|||+++++++.||.|.++|+.+++. +.+++.. .
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~ 78 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------G 78 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------S
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------C
Confidence 34578999999999999999999999997764 2444432 3
Q ss_pred ceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 115 KINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
....++++ +||++++++. .++.+.++|.++.+..+........
T Consensus 79 ~~~~i~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------- 122 (369)
T PF02239_consen 79 NPRGIAVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------- 122 (369)
T ss_dssp EEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------
T ss_pred CcceEEEc--CCCCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------
Confidence 35778887 8999998876 7899999999998766544211000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.......+..+..+|....++.+ +.+.|.+-|...... +... .........
T Consensus 123 --------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~------~i~~g~~~~ 175 (369)
T PF02239_consen 123 --------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVT------TIKVGRFPH 175 (369)
T ss_dssp --------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEEE------EEE--TTEE
T ss_pred --------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-ccee------eeccccccc
Confidence 01234567778788888866665 568898889774332 2211 111234567
Q ss_pred EEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccc-----cc--------------eeec-cc---------ccCC---
Q 010801 272 SAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHS-----AR--------------ILRD-AA---------ESHG--- 318 (501)
Q Consensus 272 ~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~-----~~--------------~~~~-~~---------~~~~--- 318 (501)
...|+|++ ++++. ...++.|-++|..++++.... .. .|.. |. ..+.
T Consensus 176 D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 176 DGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred ccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 88999999 76655 455778999998886543100 00 0000 00 0000
Q ss_pred ------CcceeeecccceeEEEEeeCCCEEEEE----cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 319 ------SKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 319 ------~~~~~~~h~~~i~~~~~sp~~~~l~~~----~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
....+.....+ .-+..+|+++++.+. .+ +.|.++|.++ .+.+..+....... +
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~ 318 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------V 318 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------E
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCc--------------E
Confidence 00011222233 567789999999876 34 8999999986 55556665333311 1
Q ss_pred eEEEEcCCCcEEEEEeC--CCeEEEEecCCCCcceEEEe
Q 010801 388 FECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~ 424 (501)
..+.|++||+.+..... ++.|.+||..+.+.+ ..++
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~-~~i~ 356 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK-KRIP 356 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE-EEEE
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEECCCcEEE-EEEE
Confidence 58999999997654433 447999999988444 4443
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.6e-10 Score=105.61 Aligned_cols=271 Identities=12% Similarity=0.137 Sum_probs=160.3
Q ss_pred ccceEEEEEccCCCEEEEEec----CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
....+.++++|++++|.+..+ +|.|..|++....- ....+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 456788999999999998876 57899999885311 112222222111
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.....++++ +++++|+++. .+|.|.++++.. +.+.....
T Consensus 87 ------~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~------------------------------- 127 (345)
T PF10282_consen 87 ------SSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ------------------------------- 127 (345)
T ss_dssp ------SCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------------------------------
T ss_pred ------CCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeee-------------------------------
Confidence 334567776 8899999887 689999999986 44333210
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeee-eecCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI-VDMKPSN 262 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (501)
++... ...... .........++.++|+++++++. ....|.+|+++.....+.. -.+ .
T Consensus 128 ------------~~~~~----g~g~~~-~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~ 187 (345)
T PF10282_consen 128 ------------TVRHE----GSGPNP-DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---K 187 (345)
T ss_dssp ------------EEESE----EEESST-TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---E
T ss_pred ------------ecccC----CCCCcc-cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---c
Confidence 00000 000000 01234556789999999988876 5679999999854422211 101 1
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+ ......+.++|+|++ +++++ ...++.|.++++................+.. +.+ ......++++|||++
T Consensus 188 ~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~------~~~-~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 188 V-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG------FTG-ENAPAEIAISPDGRF 258 (345)
T ss_dssp C-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT------SCS-SSSEEEEEE-TTSSE
T ss_pred c-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc------ccc-cCCceeEEEecCCCE
Confidence 2 233456999999999 65554 4558899999998322111111111110000 000 136789999999999
Q ss_pred EEEEc--CCcEEEEEeeCCCCceeE---eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 342 LLSRD--YMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~~--~~~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
|.++. .+.|.+|++......+.. +...... + +.++++|+|++|+++. .++.|.+|+++
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-P--------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-P--------------RHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-E--------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-c--------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 98764 489999999532223322 2221111 1 6899999999999877 46899999875
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.9e-10 Score=99.20 Aligned_cols=290 Identities=11% Similarity=0.157 Sum_probs=180.6
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEec---CCcEEEEEecC--CcCCCCccchhhhhhhccccccCC
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS 87 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (501)
.|++...-++....+.+.+.+.++-|+|+|+++.|.++-. +|.|..|.++. |+..
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 4776654556666666778899999999999999988764 47788888774 3321
Q ss_pred CCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCccccccc
Q 010801 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSEN 165 (501)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~ 165 (501)
..-...+.+ .+-..|+++ +++++++++. .-|.|.++-++. |.+..........
T Consensus 80 ---~ln~~~~~g--------------~~p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~------ 134 (346)
T COG2706 80 ---FLNRQTLPG--------------SPPCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT------ 134 (346)
T ss_pred ---EeeccccCC--------------CCCeEEEEC--CCCCEEEEEEccCceEEEEEcccCCccccceeeeecC------
Confidence 001111222 224778886 8899999987 568999998865 4432221000000
Q ss_pred ccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEE
Q 010801 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL 243 (501)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~i 243 (501)
... ... ......+.+..+.|+++++++. .-..|.+
T Consensus 135 ------------------------------------g~~--p~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 135 ------------------------------------GSG--PHE-----RQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred ------------------------------------CCC--CCc-----cccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 000 000 1112236678899999999886 5568999
Q ss_pred EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
|++. .+..... .+..+ ......+.+.|+|++ ++.++.++ +++|.+|...........++.... -|. .
T Consensus 172 y~~~-dg~L~~~---~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t---lP~---d 239 (346)
T COG2706 172 YDLD-DGKLTPA---DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT---LPE---D 239 (346)
T ss_pred EEcc-cCccccc---ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeecc---Ccc---c
Confidence 9999 4432221 11123 334456999999999 77666555 999999998874211111111111 110 0
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecccc-ccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
|.+ ..+..++..+|||++|.++. ...|-+|.+...+..+........ .. .. +.+.|++.|++|
T Consensus 240 F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~----------~P---R~F~i~~~g~~L 305 (346)
T COG2706 240 FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ----------FP---RDFNINPSGRFL 305 (346)
T ss_pred cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc----------CC---ccceeCCCCCEE
Confidence 111 35788999999999999874 378999998764444433322111 11 00 589999999999
Q ss_pred EEEeCC-CeEEEEecCCC
Q 010801 400 ATGSYS-NLLRIFSHGVG 416 (501)
Q Consensus 400 ~s~~~d-g~i~iwd~~~~ 416 (501)
+++..+ ..|.+|..+..
T Consensus 306 iaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 306 IAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEccCCCcEEEEEEcCC
Confidence 988874 56899987643
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.6e-12 Score=119.58 Aligned_cols=256 Identities=13% Similarity=0.170 Sum_probs=170.0
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
......|++|+....|+|+|+.||.++|-.+.+.... +... .+........-+++.||.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d---------~~~~---glaa~snLsmNQtLeGH~--------- 71 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD---------LNKS---GLAAASNLSMNQTLEGHN--------- 71 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc---------cccc---ccccccccchhhhhccCc---------
Confidence 4567899999999999999999999999988754321 0000 011222344557789999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|.-+.|+ .+.+.|-++..+|.|.+|-+..+........
T Consensus 72 ---~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EEMiN----------------------------------- 111 (1189)
T KOG2041|consen 72 ---ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN----------------------------------- 111 (1189)
T ss_pred ---ceEEEEEec--cccccccccCCCceEEEEeeecccHHHHHhh-----------------------------------
Confidence 999999997 6677888888999999999887763322100
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
....+.|.+++|+.||..++.. .||.|.+=.++ +.+.... .+.+ ..
T Consensus 112 ------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg--~~ 158 (1189)
T KOG2041|consen 112 ------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKG--QL 158 (1189)
T ss_pred ------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcch--he
Confidence 3456788999999999999999 99999888777 4444321 1222 22
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecccccCCCcceeeecccceeEEEEe--------eCCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQ 340 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--------p~~~ 340 (501)
...+.|++|. +.++.+-.+|.+++||.+..=...-+. ..... ...+......|..+.|. ||..
T Consensus 159 l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 159 LAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred ccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCC
Confidence 3578899998 888888899999999976531110000 00111 00011112234445543 4667
Q ss_pred EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 341 ~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
.|+.+-+ |.+.+..-.++..++-.-.+- . +..+.|+++|..||.++.+
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm-~----------------~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTGM-K----------------IVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEeccc-E----------------eecceecCCCcEEEEccCc
Confidence 7887744 888777655434443332221 1 1589999999999998875
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=7.2e-12 Score=109.55 Aligned_cols=281 Identities=13% Similarity=0.145 Sum_probs=192.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|..++|.-++....++..+.|..+..+.+....+...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----------------------------------------- 94 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----------------------------------------- 94 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccc-----------------------------------------
Confidence 668888887445555566665777777777766543321
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
+|+.... ......|..++.. ++ .|++| .+|.+.+|....+...-. +...+. ....+..
T Consensus 95 ----~~~~~~~----------~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~ 153 (412)
T KOG3881|consen 95 ----LDDAKTV----------SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYD 153 (412)
T ss_pred ----ccccccc----------ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----cceeee-cCCceee
Confidence 1222210 2334556555543 44 67777 999999999883321100 000111 2244566
Q ss_pred EEEecCCCcEEEEEeCC--CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEEcC-
Q 010801 273 AEFHPIYCNLLAYSSSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY- 347 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~~~- 347 (501)
+.-++..+.++++|+.. ..+.+||+.+.+ ++|.. .+.+...--+ .-+-+++++.|-|. ...||+++-
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------qiw~a-KNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSK------QIWSA-KNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccce------eeeec-cCCCCccccc-eeeeeeccceecCCCCCceEEEEecc
Confidence 66667665678889998 889999998874 66766 3322211100 11357889999987 788888875
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.+++||.+...+|+..+...+.++ +++...|.+++|++|..-|.+..||+..++.....+++-.
T Consensus 226 hqvR~YDt~~qRRPV~~fd~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRPVAQFDFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred eeEEEecCcccCcceeEeccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 9999999998888999988777665 7899999999999999999999999999977777799999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCccc-ccccCCCeEEEEEccCCC
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL-SYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~sp~~~ 486 (501)
+.++.+...| ..++ ++++|-|.- +|++....... ..-..+.++.+-+.++-+
T Consensus 291 Gsirsih~hp--~~~~-----las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 291 GSIRSIHCHP--THPV-----LASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred CCcceEEEcC--CCce-----EEeeccceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 9999999998 5566 999999999 99966542211 122334566666655543
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=6.2e-11 Score=114.83 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=121.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|++|+.++.+ ..|++||+.+++.....
T Consensus 190 ~~~~~p~~S--pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------------------------- 230 (417)
T TIGR02800 190 EPILSPAWS--PDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------------------------- 230 (417)
T ss_pred CceecccCC--CCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 557888897 899999887643 47999999877543321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cC--CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+...+.+++|+|||+.|+.. .+ ..|++||+.. +.... +..+
T Consensus 231 -------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~~~~~--------l~~~ 276 (417)
T TIGR02800 231 -------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-KQLTR--------LTNG 276 (417)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-CCEEE--------CCCC
Confidence 223345568899999977653 33 3688889883 33332 2233
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. ++ .|.++|+.+++.. .+.. +......+.|+|+|++|+
T Consensus 277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR-----RLTF-------------RGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-------------CCCCccCeEECCCCCEEE
Confidence 3444567899999 77766554 33 5777777665321 1111 124567789999999988
Q ss_pred EEcC-C---cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecC
Q 010801 344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG 414 (501)
Q Consensus 344 ~~~~-~---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~ 414 (501)
.+.. + .|.+||+.+ + ....+...... ....|+|||++|+..+.++ .+++.+..
T Consensus 338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7642 2 688888764 3 33333322111 3578999999888777654 35555543
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-10 Score=112.47 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=125.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+.+ ..|.+||+.+++...+.
T Consensus 218 ~~~~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------------------------- 258 (448)
T PRK04792 218 EPLMSPAWS--PDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------------------------- 258 (448)
T ss_pred CcccCceEC--CCCCEEEEEEecCCCcEEEEEECCCCCeEEec-------------------------------------
Confidence 668889998 899998877532 25788888776543321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCe--EEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.........+|+|||+.|+.. .++. |+++|+. +++... +..+
T Consensus 259 -------------------------~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~ 304 (448)
T PRK04792 259 -------------------------SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH 304 (448)
T ss_pred -------------------------CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence 011122357899999988753 5664 7777877 333332 3334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccce-eecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
.......+|+|+| +.|+..+. ++ .|.++|+.+++.. ++ +.. ......+|+|||++|
T Consensus 305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l 364 (448)
T PRK04792 305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSM 364 (448)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EEecCC---------------CCCcCeeECCCCCEE
Confidence 4455778999999 76665543 44 4666677665432 11 111 223456899999998
Q ss_pred EEEc--CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CC--eEEEEecCC
Q 010801 343 LSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGV 415 (501)
Q Consensus 343 ~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~ 415 (501)
+..+ .+ .|.++|+.+ ++ ...+...... ....|+|||++|+..+. +| .+++++.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID- 425 (448)
T ss_pred EEEEecCCceEEEEEECCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 8653 24 455566653 33 3333322111 24689999998876554 33 36677764
Q ss_pred CCcceEEEecccCcccceeecc
Q 010801 416 GSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+. ....+..+...+...+|+|
T Consensus 426 G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CC-ceEECcCCCCCcCCCccCC
Confidence 32 3345555555556666665
No 245
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=7.3e-11 Score=100.64 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=154.6
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCC------Ce
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR------GF 291 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~d------g~ 291 (501)
....+++|+.|...+++|.|.-.+||+.+.-++.... ....-.-.+..+-|.. ++|+ +|+.+ ..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASR------QFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNK 76 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhh------ccccCchhhhhHhhhh---ceEEEecCCCCCCCCCce
Confidence 3455699999999999997778999998832221110 0111112223333332 3343 34332 57
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|.|||=...+.. ..++- ..+|.++.+.+ ..|++.-.+.|+||....+-+.++.+.....+
T Consensus 77 viIWDD~k~~~i----~el~f--------------~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 77 VIIWDDLKERCI----IELSF--------------NSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred EEEEecccCcEE----EEEEe--------------ccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCC
Confidence 999993332211 22222 46899999885 46777777999999997656777777655543
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEE-EeCCCeEEEEecCCCCc-ceEEEecccCcccceeeccCCccccCcccee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.. + .+++-..+..+||. |-.-|.|.|-|+...+. ....+++|.+.|.+++... +|.+ +
T Consensus 137 kG-l------------C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~-----v 196 (346)
T KOG2111|consen 137 KG-L------------CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTL-----V 196 (346)
T ss_pred Cc-e------------EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccE-----E
Confidence 21 1 12333334556665 44569999999986644 3589999999999999998 8888 9
Q ss_pred eeecccce--eeccc--cCCcccccc--cCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 450 TRGLYRQA--HENSS--SGHHELSYN--LSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 450 ~~~~~~~~--~iw~~--~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
|++|..|+ +||++ ++.+.+... -...|.+|+|||+..+||++++.+ +.||.
T Consensus 197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 99999999 99943 344444332 235899999999999999999765 88875
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.3e-10 Score=106.66 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=180.0
Q ss_pred cccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+++...-+.|..+ |||+++++. ...-.|++||+.+-.++.....
T Consensus 48 fe~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--------------------------------- 92 (703)
T KOG2321|consen 48 FEMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSLKFERHL--------------------------------- 92 (703)
T ss_pred cCCccccceeEec--CCCcEEEEecccCCceEEEEcccceeeeeecc---------------------------------
Confidence 3344777888887 899987654 5788999999987654432211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....|.-.-.+.|-..++.= .|.+|.+-.-- +.-..+ .++
T Consensus 93 ----------------------------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~------RIP--- 133 (703)
T KOG2321|consen 93 ----------------------------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT------RIP--- 133 (703)
T ss_pred ----------------------------cccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee------ecC---
Confidence 01122222234343333333 56666654322 221111 011
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..-+.++++.-.+.+++ ++....|.-+++..|... ..+.. ..+.++.|..++-..+|++|+
T Consensus 134 ~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred cCCccccccCCCccEEE-eecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceEEeccc
Confidence 12245666644424444 445557888899988644 22322 136799999999999999997
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+|.|..||.+. ...+.++..... +.... ..+....|+++.|+-+|-.+++|+.+|.|.|||+.+.+.+...-.+-
T Consensus 196 ~g~VEfwDpR~-ksrv~~l~~~~~-v~s~p---g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 196 DGVVEFWDPRD-KSRVGTLDAASS-VNSHP---GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred CceEEEecchh-hhhheeeecccc-cCCCc---cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 59999999986 555555554333 11000 11122234899999999999999999999999999887665555555
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeec-cccCCcccccccCCCeEEEEEccCCCEEEEeeCCe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 495 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw-~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~ 495 (501)
.-++..+.|.+...... +++....-.+|| ...+......+.+..++.+++-|++.++.+|.++.
T Consensus 271 e~pi~~l~~~~~~~q~~-----v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNK-----VVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ccceeeecccccCCCce-----EEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 66788888877533333 555444333999 33344455667777899999999999999998665
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=8.9e-11 Score=113.82 Aligned_cols=204 Identities=15% Similarity=0.163 Sum_probs=124.9
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.+.+...+|||||+.||..+.+ ..|.+|++.+++.. .+....
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----------------------------~l~~~~----- 242 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----------------------------QITNFE----- 242 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------------EccCCC-----
Confidence 567789999999999999876533 36888999877531 122122
Q ss_pred ccccccccceeEEEEeecCCCCEEEEe-eCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.+...+|+ |+|+.|+.. +.++ .|.+||+.+++...+
T Consensus 243 -------g~~~~~~~S--pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------- 282 (430)
T PRK00178 243 -------GLNGAPAWS--PDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------- 282 (430)
T ss_pred -------CCcCCeEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEEc-------------------------------
Confidence 334568897 788888754 4444 577778877664332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+........|+|||+.++.. .++ .|+++++.. ++...+.
T Consensus 283 -------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~~~~lt--- 327 (430)
T PRK00178 283 -------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GRAERVT--- 327 (430)
T ss_pred -------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEee---
Confidence 1222334557899999987764 444 577777763 3333221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCC-C--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+ .......|+|+| +.|+..+.+ + .|.+||+.+++. +.+.. ........|+
T Consensus 328 ---~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~s 382 (430)
T PRK00178 328 ---FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVA 382 (430)
T ss_pred ---cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceEC
Confidence 111 223456899999 777766543 3 578889887643 22221 0112345899
Q ss_pred eCCCEEEEEc-C-C--cEEEEEeeCCCCceeEeecc
Q 010801 337 NDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 337 p~~~~l~~~~-~-~--~i~lwd~~~~~~~~~~~~~~ 368 (501)
|||+.++..+ + + .|+++++. +.....+..+
T Consensus 383 pdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 383 PNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 9999988653 2 3 45666653 5555555433
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4e-10 Score=109.28 Aligned_cols=212 Identities=16% Similarity=0.152 Sum_probs=129.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|+.|+..+.+ ..|.+|++.+++...+.
T Consensus 199 ~~~~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------------------------- 239 (430)
T PRK00178 199 EPILSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------------------------- 239 (430)
T ss_pred CceeeeeEC--CCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence 668889998 789998877643 36888898877644321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....+...+|+|||+.|+.. .++ .|++||+.+ +.... +..+
T Consensus 240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~~~~--------lt~~ 285 (430)
T PRK00178 240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQLSR--------VTNH 285 (430)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CCeEE--------cccC
Confidence 111233458899999988753 444 688889883 33332 2334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. +| .|.++|+.+++.. ++... ........|+|||++|+
T Consensus 286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence 4445677899999 76665553 33 5667777665432 11111 12234578999999998
Q ss_pred EEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCC
Q 010801 344 SRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~ 416 (501)
... + ..|.++|+.+ ++ ...+... ... ....|+|||++|+..+.+ ..|.++++...
T Consensus 347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEccCCceEEEEEECCC-CC-EEEccCC-CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 653 2 3578888874 33 3333221 111 246899999998876653 34666676533
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+...+...+++|
T Consensus 409 --~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 --VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --ceEECcCCCCCcCCCccCC
Confidence 2234444445555556655
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.9e-11 Score=113.67 Aligned_cols=206 Identities=14% Similarity=0.124 Sum_probs=122.7
Q ss_pred ccccceEEEEEccCCCEEEEEec-CC--cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+...+.+.+|||||+.||..+. ++ .|.+||+.+++.. .+..+.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~-------- 261 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFP-------- 261 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCC--------
Confidence 44667889999999999987653 33 5888888776431 112222
Q ss_pred ccccccccceeEEEEeecCCCCEEEEe-eCCCe--EEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~--i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.....+|+ |||+.|+.. +.++. |.++|+.+++...+
T Consensus 262 -------g~~~~~~wS--PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------- 301 (448)
T PRK04792 262 -------GINGAPRFS--PDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------- 301 (448)
T ss_pred -------CCcCCeeEC--CCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence 223467897 788888754 55564 66677776654332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+.......+|+|||+.|+.. .++ .|.++|+. +++...+.
T Consensus 302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt--- 346 (448)
T PRK04792 302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT--- 346 (448)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence 1223344567899999988764 444 45556666 33333221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+. .....+|+|+| +.|+..+. ++ .|.++|+.++... .+.. ........|+
T Consensus 347 ---~~g~--~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~--------------~~~d~~ps~s 401 (448)
T PRK04792 347 ---FEGE--QNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTS--------------TRLDESPSVA 401 (448)
T ss_pred ---cCCC--CCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccC--------------CCCCCCceEC
Confidence 1222 22456899999 77766554 44 4555677765431 1211 0112234799
Q ss_pred eCCCEEEEEc--CC--cEEEEEeeCCCCceeEeecccc
Q 010801 337 NDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 337 p~~~~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|||+.|+... ++ .+++++.. ++....+..+..
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 9999887643 23 46666763 666666655433
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=2.2e-10 Score=110.95 Aligned_cols=187 Identities=15% Similarity=0.106 Sum_probs=117.0
Q ss_pred CcccceEEEEecCCCCEEEEE-cC---CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
.+...+.+.+|+|||+.|+.+ .+ ..|++||+.++. ... +..+...+.+++|+|+| +.|+ +.+.++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~--------~~~~~~~~~~~~~spDg-~~l~~~~~~~~ 256 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REK--------VASFPGMNGAPAFSPDG-SKLAVSLSKDG 256 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE--------eecCCCCccceEECCCC-CEEEEEECCCC
Confidence 344567788999999999876 32 579999998433 222 22234456678999999 6555 444444
Q ss_pred --eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--C--cEEEEEeeCCCCceeE
Q 010801 291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVAT 364 (501)
Q Consensus 291 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~--~i~lwd~~~~~~~~~~ 364 (501)
.|.+||+.++... + +.. +........|+|||+.|+..++ + .|+++|+.. ++ ...
T Consensus 257 ~~~i~~~d~~~~~~~----~-l~~-------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~ 316 (417)
T TIGR02800 257 NPDIYVMDLDGKQLT----R-LTN-------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRR 316 (417)
T ss_pred CccEEEEECCCCCEE----E-CCC-------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5888888776432 1 111 1223456789999998876543 3 577777753 33 334
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
+..+.... ....|+|+|++|+..+.++ .|.+||+.++.. ..+... .......++| ++
T Consensus 317 l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~sp--dg 376 (417)
T TIGR02800 317 LTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAP--NG 376 (417)
T ss_pred eecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECC--CC
Confidence 43232221 4689999999999888775 788999887532 223222 2234556777 66
Q ss_pred ccCccceeeeecccce
Q 010801 442 RRSSLSNLTRGLYRQA 457 (501)
Q Consensus 442 ~~~~~~~l~~~~~~~~ 457 (501)
+. |+....++.
T Consensus 377 ~~-----l~~~~~~~~ 387 (417)
T TIGR02800 377 RM-----ILYATTRGG 387 (417)
T ss_pred CE-----EEEEEeCCC
Confidence 65 566555543
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.37 E-value=3.7e-10 Score=102.40 Aligned_cols=294 Identities=11% Similarity=0.119 Sum_probs=170.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-++..++|||.|.+|++.... -|.+|.......+ ..+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l---------------------------~~~~~------------ 71 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL---------------------------VRFRH------------ 71 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhhe---------------------------eeeec------------
Confidence 5689999999999999987655 5889986654321 22322
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCC---------------eEEEEeccccceeeeeccCCCccccc-ccccccccCccc
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVSS-ENTLLAEKNFMN 175 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~---------------~i~lw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 175 (501)
..|..+.|+ |++++|.+-+... .+.+||+.++.+...........+-- +.+...+.....
T Consensus 72 --~~V~~~~fS--P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 72 --PDVKYLDFS--PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred --CCceecccC--cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 448888897 7888988855433 48999999998776654433221100 000000000000
Q ss_pred cCC---------CCCCccc------ccc----eeccC---cceEEEeccCceeeeeeEeecCCcccce----------EE
Q 010801 176 EHN---------PPSFAHG------YHL----EWTEN---MATKIANVGNSVHARCQKVYPHAHDFNI----------NS 223 (501)
Q Consensus 176 ~~~---------~~~~~~~------~~~----~~~~~---~~i~~w~~~~~~~~~~~~~~~~~~~~~v----------~~ 223 (501)
-.. ..+.... +.+ .+++. ..+..|-.+........+.+.......+ ..
T Consensus 148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred hhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 000 0000000 011 11111 1356666665444333333211111111 14
Q ss_pred EEecCCCCEEEEE--c----------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE--eCC
Q 010801 224 ISNNSDCETFVSA--D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSR 289 (501)
Q Consensus 224 l~~~~~~~~l~~~--~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~d 289 (501)
+.|.+.|+++++= . ...+.|+++. +..+.. ..+..++|...+|.|.+ +.+++. -.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~p 297 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMP 297 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEecccc
Confidence 5666777766541 1 1345566655 222211 11457899999999998 655554 458
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEe
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~ 365 (501)
-.+.++|++.+ +. ..+. ...=+.+.|+|.+++++.++ . |.+-+||.......+..+
T Consensus 298 a~~s~~~lr~N-l~----~~~P---------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 298 ASVSVFDLRGN-LR----FYFP---------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred cceeecccccc-eE----EecC---------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 88999999876 21 1111 23457788999999988753 2 899999987423334455
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecCCC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVG 416 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~ 416 (501)
.+... .-+.|+||++++.+... |..|.|||+...
T Consensus 358 ~~~n~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 358 NGLNT-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ecCCc-----------------eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 55443 34789999999886643 788999998744
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.4e-09 Score=102.58 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=100.2
Q ss_pred eEEEEecCCCCEEEEE--cCC----eEEEEECCCC--CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CCCe
Q 010801 221 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF 291 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~ 291 (501)
....+|+|||+.|+.. .+| .+.+|++... +....+ ...........+|+||| +.|+..+ .+|.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~ 304 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR 304 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence 3457899999988864 233 3444666532 222222 11122334567999999 7666655 4665
Q ss_pred EEEEEc--cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C---CcEEEEEeeCCCCceeEe
Q 010801 292 VRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 292 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~ 365 (501)
..+|.+ ...... .+.+.. +...+....|+|||+.|+... . ..|++||+.+ ++. ..+
T Consensus 305 ~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~L 366 (428)
T PRK01029 305 PRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQL 366 (428)
T ss_pred ceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEc
Confidence 555543 221100 011211 124567889999999988653 2 5799999874 443 333
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC---CCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....... ....|+|||++|+.... ...|+++++.+++. ..+......+...+++|
T Consensus 367 t~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 367 TTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred cCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecC
Confidence 3222111 46899999998875433 35688889887643 33333344455566665
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.2e-09 Score=104.60 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEE--CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---CeEE
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR 293 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~ 293 (501)
....+|+|||+.|+.. .++...+|. +...+..... +..+...+....|+|+| +.|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence 3567999999987764 566555554 4311211111 22333456788999999 877766543 4689
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c---CCcEEEEEeeC
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRM 357 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~---~~~i~lwd~~~ 357 (501)
+||+.+++.. .+.. ....+....|+|||+.|+.. . ...|+++|+..
T Consensus 355 v~dl~~g~~~-----~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 355 VYDLATGRDY-----QLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEECCCCCeE-----EccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999887542 2221 01245678999999988743 2 26788888864
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=5.2e-09 Score=94.26 Aligned_cols=145 Identities=13% Similarity=0.171 Sum_probs=105.9
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCC-eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+|...|.-..+..+++-++.| .|| .+-|+|.+ +++..+ +...-+.|.++..+|+| +.++++.....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 3666778878887788888888 777 99999999 444333 34556789999999999 999999999999
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE---cC--CcEEEEEeeCCCCceeEeec
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY--MNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~---~~--~~i~lwd~~~~~~~~~~~~~ 367 (501)
.+.|+.+++. +..+. . ..+-|+..+|||+++++|-+ +. ..|+++|+.. ++.. ....
T Consensus 426 ~vididngnv-----~~idk-S-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy-~vTT 486 (668)
T COG4946 426 WVIDIDNGNV-----RLIDK-S-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY-DVTT 486 (668)
T ss_pred EEEEecCCCe-----eEecc-c-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE-EecC
Confidence 9999999865 33332 1 13579999999999999976 21 7899999974 4433 2222
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
....- .+-+|.||+++|.--+
T Consensus 487 ~ta~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 PTAYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred Ccccc---------------cCcccCCCCcEEEEEe
Confidence 22211 4678889998876443
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.1e-10 Score=112.68 Aligned_cols=150 Identities=15% Similarity=0.270 Sum_probs=121.2
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
+.++++.-++++|+.-+.|.+|++...... ..+.||+ +.|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF 179 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIF 179 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceE
Confidence 345677788999999999999998833221 1588999 9999
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|+ .+|.++++.|.|+++|+|++++.+.....
T Consensus 180 ~i~~s--~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-------------------------------------------- 213 (967)
T KOG0974|consen 180 SIVTS--LDGRYIASVSDDRSIRLWPIDSREVLGCT-------------------------------------------- 213 (967)
T ss_pred EEEEc--cCCcEEEEEecCcceeeeecccccccCcc--------------------------------------------
Confidence 99998 79999999999999999999987633200
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~ 275 (501)
.-+|...|+.+.|.|+ .++++ .|.+.++|+.+ ..+ +.. +.+| ...|+.++.
T Consensus 214 ----------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~-------y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 214 ----------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV-------YDEHSGKGIWKIAV 266 (967)
T ss_pred ----------------cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh-------hhhhhhcceeEEEE
Confidence 0499999999999998 77777 99999999877 333 222 4455 457899999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+.. ..+++++.|+.+++||+...
T Consensus 267 ~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 267 PIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cCCc-eEEEeeccCcchhhhhhhcc
Confidence 9987 89999999999999998764
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-10 Score=99.78 Aligned_cols=251 Identities=14% Similarity=0.131 Sum_probs=144.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccce---eeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+-|.+|.|. ..|.+|++|..+|.|.++.-....- ......+..+ +.
T Consensus 26 diis~vef~--~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe--------------------pE--------- 74 (433)
T KOG1354|consen 26 DIISAVEFD--HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE--------------------PE--------- 74 (433)
T ss_pred cceeeEEee--cccceEeecCCCCeEEEeecccccccceeeeeeeeccC--------------------cc---------
Confidence 558899997 8899999999999999996543221 1111000000 00
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC---EEEEEcCCeEEEEECCCCCeee--------------
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-------------- 253 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~~d~~i~iwd~~~~~~~~-------------- 253 (501)
...++. ..-...|..+.|.++++ +|+++.|.+|++|-+...+...
T Consensus 75 ----------------FDYLkS--leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~ 136 (433)
T KOG1354|consen 75 ----------------FDYLKS--LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI 136 (433)
T ss_pred ----------------cchhhh--hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence 000111 12245678889987654 3444599999999876322111
Q ss_pred ---eeeecC---------CC--CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC
Q 010801 254 ---NIVDMK---------PS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 254 ---~~~~~~---------~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
+...+. +. .-.+|...|.++.++.|+ +.++++ .|=.|.+|++.-..... .+.+. .|..
T Consensus 137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI---KP~n 208 (433)
T KOG1354|consen 137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI---KPAN 208 (433)
T ss_pred ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc---cccC
Confidence 010011 11 124578889999999998 777765 47789999886543221 22221 0000
Q ss_pred cceeeecccceeEEEEeeCC-CEEEEE-cCCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 320 KSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 320 ~~~~~~h~~~i~~~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
......-|++..|+|.. ..++.. +-|+|++-|++...-+ -..+.....+... ..-.+.|..|..+.|++
T Consensus 209 ---mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r---sffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 209 ---MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR---SFFSEIISSISDVKFSH 282 (433)
T ss_pred ---HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch---hhHHHHhhhhhceEEcc
Confidence 11123468899999964 444444 4599999999831110 0111111111100 00011222346899999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+|+++++-+. -+|++||+.-......+.+.|..
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 9999998876 68999999655455566766654
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=1.1e-09 Score=92.46 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=116.6
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
...++.|++.+..++++ .+|.+.+-+.. .....+ .+..+.|...++..+|+...++++++|+.|+.+..||+|
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecc-eeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 34578899999999999 99999965544 222221 124688999999999998887899999999999999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcC-CcEEEEEeeCCCCceeEeecccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
..+. .+|.. ..-|...|.++.-+| .+.+|++|+. ..|++||.++-++++..-....+
T Consensus 197 ~p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG------ 255 (339)
T KOG0280|consen 197 IPKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG------ 255 (339)
T ss_pred CCcc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc------
Confidence 4321 33332 133677899998886 5779999985 99999999976787765543322
Q ss_pred ccCCCCCcceeeEEEEcCC--CcEEEEEeCCCeEEEEecCCC
Q 010801 377 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.+.++|. ++.|+++..+| .+|-+++.+
T Consensus 256 ----------VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 256 ----------VWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred ----------eEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 288999985 55677777766 466676654
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.4e-09 Score=95.50 Aligned_cols=316 Identities=16% Similarity=0.209 Sum_probs=183.3
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
=+-+.|||-|.||+|--..| |.+|--++-.. ++.| .| .
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p 250 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------P 250 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------C
Confidence 46799999999999987665 78896442211 1111 24 4
Q ss_pred ceeEEEEeecCCCCEEEEeeCC-----------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 115 KINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d-----------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.|.-+.|| |+.++|++=+.. ..++|||+.+|..++.....
T Consensus 251 ~Vq~idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--------------------------- 301 (698)
T KOG2314|consen 251 GVQFIDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--------------------------- 301 (698)
T ss_pred CceeeecC--CccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc---------------------------
Confidence 48889998 788999986522 46788888887765543110
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceE-EEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.....++ -..||.|++++|.-....|.||+..+ ...++.++.
T Consensus 302 --------------------------------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl- 344 (698)
T KOG2314|consen 302 --------------------------------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL- 344 (698)
T ss_pred --------------------------------CCCccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc-
Confidence 0111222 35789999998876557899998773 222222221
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeC-----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
....|....|+|.+ ++||.=.. -..+.+..+.+++.+ +.-.. |.-.=..+-|-.
T Consensus 345 ---ki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk 403 (698)
T KOG2314|consen 345 ---KISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQK 403 (698)
T ss_pred ---CCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEecc
Confidence 23457888999997 88875433 234555555544322 11111 111223455667
Q ss_pred CCCEEEEEcC-----------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--
Q 010801 338 DGQHLLSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-- 404 (501)
Q Consensus 338 ~~~~l~~~~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-- 404 (501)
+|.+|+.-.| ..+.|+.++...-++......... ...+|-|.|..+++-+.
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccc
Confidence 8888875321 235566665323344444333222 68999999987775543
Q ss_pred -CCeEEEEecCC-CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC--Cc-ccccccCCCeEE
Q 010801 405 -SNLLRIFSHGV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HH-ELSYNLSSKLLH 478 (501)
Q Consensus 405 -dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~--~~-~~~~~~~~~i~~ 478 (501)
..++.+|.+++ .........-.+...+.+-++| .|++ ....+.+|..+. ...+++- .. ....+|. ..+.
T Consensus 468 ~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP--kG~f--vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~ 542 (698)
T KOG2314|consen 468 VKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP--KGRF--VVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATE 542 (698)
T ss_pred cccceeEEEeecCCCchhhhhhhcccccceEEEcC--CCcE--EEEEEecccccceEEEecchhhhhhccCcccc-cccc
Confidence 46789998883 3222122222234556777888 6777 222233344444 4444431 11 1112222 3467
Q ss_pred EEEccCCCEEEEee-------CCeEEEEe
Q 010801 479 LAWHPTTNLIACAN-------GNSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~-------~~~~~i~~ 500 (501)
+-|.|.|.++++++ ++|..||+
T Consensus 543 veWDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 543 VEWDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred ceECCCCCEEEEeeehhhhccccceEEEE
Confidence 89999999999887 56677765
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.4e-09 Score=97.21 Aligned_cols=276 Identities=14% Similarity=0.168 Sum_probs=159.1
Q ss_pred cceEEEEEccCCCEEEEEe-----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC
Q 010801 33 DIVSAIEFDKTGDYLAVGD-----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (501)
..|.-+.|||+.+||+|=+ +...++|||+.+|... +.|..-.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF~~~~ 302 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSFPVIK 302 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cceeccC
Confidence 3589999999999999854 2257999999998753 2222211
Q ss_pred cchhhccccccccceeE-EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC
Q 010801 102 PEFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~-v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
. ...++. .+|| .|++++|--.. .+|.||+.....+....... -.++....++|
T Consensus 303 ~----------~~~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-------------i~gIr~FswsP 356 (698)
T KOG2314|consen 303 S----------PYLKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLK-------------ISGIRDFSWSP 356 (698)
T ss_pred C----------CccccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccC-------------CccccCcccCC
Confidence 0 022333 4787 78899887766 46999987764433221111 12344444444
Q ss_pred CCcccccceeccCcceEEEeccCcee-----------eeeeEeecCCcccceEEEEecCCCCEEEEE-c----C------
Q 010801 181 SFAHGYHLEWTENMATKIANVGNSVH-----------ARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------ 238 (501)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~w~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d------ 238 (501)
.... +..|..+.+.. .+.+++. .-+.-.=..+-|-.+|.+|+.- + .
T Consensus 357 ~~~l-----------lAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 357 TSNL-----------LAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred Ccce-----------EEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 4332 23333332211 1111111 1111111245677788888763 1 1
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccc
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAE 315 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~ 315 (501)
..+.|+.++...-.+..+ .....|...+|.|.| +.+++-+. ..++.+|-+.+.......++.++.
T Consensus 425 ~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--- 492 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--- 492 (698)
T ss_pred eeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---
Confidence 124566665333333322 234678899999999 66655443 367888888753322223333333
Q ss_pred cCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCcee-EeeccccccccccccCCCCCcceeeEE
Q 010801 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 316 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
...+.+.|+|.|++++.+. .|.+.++|... ..... ....|... +.+
T Consensus 493 ------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~v 543 (698)
T KOG2314|consen 493 ------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEV 543 (698)
T ss_pred ------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc----------------ccc
Confidence 4578899999999998652 38999999863 12111 11223322 679
Q ss_pred EEcCCCcEEEEEeCC------CeEEEEecC
Q 010801 391 SVSGDGLHFATGSYS------NLLRIFSHG 414 (501)
Q Consensus 391 ~~s~~~~~l~s~~~d------g~i~iwd~~ 414 (501)
.|.|.|+|+++++.- .--+||++.
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEee
Confidence 999999999998863 334555554
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.7e-09 Score=99.41 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE--EeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
.++++.+++ +..+.-. + ...++|.++.|+|++ +.|++ |-.-..+.+||++.. -+++- .
T Consensus 251 q~Lyll~t~-g~s~~V~-------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~-------~v~df-~-- 310 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVP-------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGK-------PVFDF-P-- 310 (566)
T ss_pred ceEEEEEec-CceEEEe-------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCC-------EeEeC-C--
Confidence 367777777 3322211 1 246899999999999 65554 445788999999864 23332 1
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.++-+.+-|+|.|++|+.++ . |.|.+||+.+ .+++..+..... +-+.|
T Consensus 311 ----------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW 362 (566)
T KOG2315|consen 311 ----------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEW 362 (566)
T ss_pred ----------CCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEEE
Confidence 36778999999999988653 3 9999999986 888888876665 45999
Q ss_pred cCCCcEEEEEeC------CCeEEEEecCC
Q 010801 393 SGDGLHFATGSY------SNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~------dg~i~iwd~~~ 415 (501)
+|||++++|++. |+.++||+...
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999999998875 78899999864
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=3.2e-10 Score=97.75 Aligned_cols=205 Identities=10% Similarity=0.150 Sum_probs=135.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+++++.+.++...|++|-.+|++.-+.+...-. ...+.+....|.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh----------
Confidence 67899999999999999999999998887653211 122334556677
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|..+-|+ ....++++.+.|..+.---.+.+....-..+. ....... .+..+.+.|..
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--------------~~~t~~~--~d~~~~fvGd~- 173 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--------------TPASALQ--FDALYAFVGDH- 173 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEee--------------ccCCCCc--eeeEEEEeccc-
Confidence 889999997 45679999999987754444433311110000 0000000 00001222221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+.+....+.... -..+.++ .+|.+.+.+++|.+....+.+| .|..+.+||+. ..+-... .+.+|...|
T Consensus 174 -~gqvt~lr~~~~~-~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~~kV 243 (404)
T KOG1409|consen 174 -SGQITMLKLEQNG-CQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHNDKV 243 (404)
T ss_pred -ccceEEEEEeecC-CceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccchhhh
Confidence 2233333322211 1223333 8999999999999999999999 99999999998 4433322 378899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
..+...+.- +.+.+++.||.|-+||+....
T Consensus 244 ~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 244 QALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 999888887 899999999999999997653
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.26 E-value=2.8e-08 Score=103.09 Aligned_cols=354 Identities=12% Similarity=0.093 Sum_probs=187.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEE----EecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.+.|.++.|-++...|+.+..+|.|.+. +..+.+ .+....+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG~v---------- 119 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVGSV---------- 119 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEEEE----------
Confidence 5789999999999999999999999999 433322 1122222
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.+|.+++|| ||+..|+.++.++++.+... +...+........ .......+..-++...+- +.
T Consensus 120 -----d~GI~a~~WS--PD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~--------~~~~~~~VsVGWGkKeTQ-F~ 182 (928)
T PF04762_consen 120 -----DSGILAASWS--PDEELLALVTGEGNLLLMTR-DFDPISEVPLDSD--------DFGESKHVSVGWGKKETQ-FH 182 (928)
T ss_pred -----cCcEEEEEEC--CCcCEEEEEeCCCEEEEEec-cceEEEEeecCcc--------ccCCCceeeeccCcccCc-cC
Confidence 2789999998 89999999999998887642 2222222211100 011111222222111100 00
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c----C--CeEEEEECCCCCeeeeeeecCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D--LRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d--~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
|.......-++-+.... ....... . ....-..++|..||+++|++ - + ..+++|+.+ +....+
T Consensus 183 Gs~gK~aa~~~~~p~~~--~~d~~~~-s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~st----- 251 (928)
T PF04762_consen 183 GSAGKAAARQLRDPTVP--KVDEGKL-S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQST----- 251 (928)
T ss_pred cchhhhhhhhccCCCCC--ccccCcc-c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEec-----
Confidence 00000000000000000 0000001 2 44456689999999999985 2 2 579999988 333221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.+.-.+--.+++|.|.| ++||+... ...|.+|.-..-+. .-|.. .. ......|..+.|++
T Consensus 252 --SE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh-----geF~l-~~--------~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 252 --SEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH-----GEFTL-RF--------DPEEEKVIELAWNS 314 (928)
T ss_pred --cccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe-----eeEec-CC--------CCCCceeeEEEECC
Confidence 12222223578999999 99988765 34566665332211 11222 00 01235789999999
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 414 (501)
|+..||..-...|.+|-..+ .. ..+++....... + ..+.|+|. ...|...+.+|.+..++..
T Consensus 315 ds~iLAv~~~~~vqLWt~~N-YHWYLKqei~~~~~~~-----------~---~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 315 DSEILAVWLEDRVQLWTRSN-YHWYLKQEIRFSSSES-----------V---NFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCEEEEEecCCceEEEeeC-CEEEEEEEEEccCCCC-----------C---CceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 99999987656699998764 32 222333222211 0 35999995 4457777776777666543
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccce--ee--ccccC----CcccccccCCCeEEEEEccCCC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HE--NSSSG----HHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i--w~~~~----~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
-.-.. .. ...|...+ ..+--||. .+ +...- .......+...|.+++|++++.
T Consensus 380 ~~v~~-----s~-------~~~~~D~g--------~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 380 WDVSR-----SP-------GSSPNDNG--------TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred EEEEe-----cC-------CCCccCce--------EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 11000 00 00000000 11111222 11 11110 0112235678999999999998
Q ss_pred EEEEeeCCe-EEEEe
Q 010801 487 LIACANGNS-LFFHY 500 (501)
Q Consensus 487 ~la~~~~~~-~~i~~ 500 (501)
.+|+-..++ +.+|.
T Consensus 440 ~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYE 454 (928)
T ss_pred eEEEEECCCCEEEEE
Confidence 777666555 88775
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.1e-09 Score=101.27 Aligned_cols=194 Identities=17% Similarity=0.279 Sum_probs=141.3
Q ss_pred ccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEE
Q 010801 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (501)
Q Consensus 41 s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (501)
.|-+.|+|....||.++||+..+++.. -++.+...+. +...+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s---------------~t~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLS---------------GTCTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhcc---------------CcceeEE
Confidence 456789999999999999999987652 1122222222 2223333
Q ss_pred Eee------------------cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 121 WCA------------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 121 ~~~------------------~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
|.- ..+...++-|...|.|.+|++..+++......
T Consensus 46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st--------------------------- 98 (541)
T KOG4547|consen 46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST--------------------------- 98 (541)
T ss_pred EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec---------------------------
Confidence 320 12334566677888888888888776544311
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
..|.+.|.++.++.+-..|.++ .|+.+..|+.. ..+..+.
T Consensus 99 --------------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~------ 139 (541)
T KOG4547|consen 99 --------------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI------ 139 (541)
T ss_pred --------------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee------
Confidence 5889999999999998899998 99999999998 5556654
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--- 338 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--- 338 (501)
...-...+.+++.+||+ .++++++ +.|++||+.+.+.. ..| .||.++|..+.|.-+
T Consensus 140 -~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv----~~f-------------tgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 140 -WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVV----ITF-------------TGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred -eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEE----EEe-------------cCCCcceEEEEEEEeccc
Confidence 34455678899999998 9998876 58999999998654 444 458899999999987
Q ss_pred --CCEEEEEcC--CcEEEEEeeC
Q 010801 339 --GQHLLSRDY--MNLKLWDIRM 357 (501)
Q Consensus 339 --~~~l~~~~~--~~i~lwd~~~ 357 (501)
|++++++.. .-+.+|-++.
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 788887643 6788887764
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=6.7e-10 Score=102.70 Aligned_cols=208 Identities=14% Similarity=0.124 Sum_probs=145.2
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+...++|....||.+++|+...++....+..... ....++--.|.+...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-------------------------------~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-------------------------------LSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh-------------------------------ccCcceeEEEEEEec
Confidence 4567899999999999999998876554321110 111112223332211
Q ss_pred eeeeeeEeecCCcccceEEEEe----cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC
Q 010801 205 VHARCQKVYPHAHDFNINSISN----NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~----~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 279 (501)
..|+ ...++.+ +.+...++-| ..|.|.+|++. .++....+ .-..|.+.|.++.++.+-
T Consensus 52 --~s~~---------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~ 114 (541)
T KOG4547|consen 52 --YSPM---------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL 114 (541)
T ss_pred --cchH---------HHHhHHHHhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc
Confidence 0111 1112211 2344466678 89999999999 44443322 246799999999999887
Q ss_pred CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCC
Q 010801 280 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 359 (501)
Q Consensus 280 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~ 359 (501)
..|.+++.|+.+..|+....... +.+.. -...+.+++.+|||+.+++++ ++|++||+.+ .
T Consensus 115 -~ciyS~~ad~~v~~~~~~~~~~~----~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-k 174 (541)
T KOG4547|consen 115 -GCIYSVGADLKVVYILEKEKVII----RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-K 174 (541)
T ss_pred -CceEecCCceeEEEEecccceee----eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-c
Confidence 89999999999999999887554 44444 235689999999999999887 8999999996 9
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCC-----CcEEEE-EeCCCeEEEEecCC
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GLHFAT-GSYSNLLRIFSHGV 415 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~s-~~~dg~i~iwd~~~ 415 (501)
+.+..|.+|..++ .+++|..+ |.++.+ ...+.-+.+|-+..
T Consensus 175 evv~~ftgh~s~v---------------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFTGHGSPV---------------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEecCCCcce---------------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999987 56777655 566554 45567788887764
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=4.7e-10 Score=110.25 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=120.3
Q ss_pred EecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 225 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 225 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
-++++.-++++| .-+.|.+|+........ .+.+|.+.|.++.++-+| .++++.|.|+++++|++.+++..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 346667788888 89999999988333333 378999999999999999 99999999999999999987643
Q ss_pred ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCC
Q 010801 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (501)
. . ..-+|+..+..+.|.|+ .++++ .|-+.++|+.. +..+..+.+|...-
T Consensus 211 ~-------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~---------- 260 (967)
T KOG0974|consen 211 G-------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKG---------- 260 (967)
T ss_pred C-------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcc----------
Confidence 1 0 12458899999999998 66665 57999999875 67777888876642
Q ss_pred CcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+..++..++...++|++.||.+++|++..
T Consensus 261 ----iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 261 ----IWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ----eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 27899999999999999999999999864
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=5.8e-09 Score=88.29 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=162.9
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.|.+.++++....... +..+.....+.+..+.|.. +|. .++-+ ..|.|.++........... .+.......
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L---~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL---RGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee---cccchhhhh
Confidence 4556666666543222 2222123345566677742 444 34446 7899999987632222221 111111111
Q ss_pred c-ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 268 E-VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 268 ~-~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
. ...++.|++.+ ..++++..+|.+.+-+.....+. ..+.+ +.|.-.++.+.|+... +.+.+|
T Consensus 121 ~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le--~vq~w-------------k~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 121 VVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLE--KVQTW-------------KVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred heeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeee--ecccc-------------cccceeeeeeecccCCCceEEec
Confidence 1 24678899988 88999999999986555443221 11233 3467788888888644 566788
Q ss_pred cC-CcEEEEEeeCCCCceeE-eeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 DY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+| +.+..||++.+++.+.. .+.|...+ .++.-+| .+.+|++|+.|-.|++||..+-.+....
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV---------------~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGV---------------VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecce---------------EEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence 65 99999999954554443 44555544 5666665 5779999999999999999864333222
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccceeecccc----C---CcccccccCCCeEEEEEccCCCEEEEee--C
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS----G---HHELSYNLSSKLLHLAWHPTTNLIACAN--G 493 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~----~---~~~~~~~~~~~i~~~~~sp~~~~la~~~--~ 493 (501)
- .-.+.|+.+...|....++ |+.+..+|.++-+.. + .......|.+-+..-.|......||+++ +
T Consensus 250 ~-~v~GGVWRi~~~p~~~~~l-----L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYD 323 (339)
T KOG0280|consen 250 A-KVGGGVWRIKHHPEIFHRL-----LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYD 323 (339)
T ss_pred C-ccccceEEEEecchhhhHH-----HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccc
Confidence 1 2237899999999766666 788888877555222 2 1222345666666778866667788876 4
Q ss_pred CeEE-EE
Q 010801 494 NSLF-FH 499 (501)
Q Consensus 494 ~~~~-i~ 499 (501)
+.++ +|
T Consensus 324 k~~~~~W 330 (339)
T KOG0280|consen 324 KKIRQLW 330 (339)
T ss_pred cceeeee
Confidence 4434 55
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=2.3e-07 Score=96.44 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=98.7
Q ss_pred EEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 223 SISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
+++|.|.|++||+. . ...|.+|..+ +.....+.++ +......|..+.|++++ ..|+....|. |.+|-..
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEee
Confidence 58999999999996 3 4567777766 3333323222 33456688999999998 9999977665 9999887
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEee----CC-------CCceeEe
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR----MD-------STPVATF 365 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~----~~-------~~~~~~~ 365 (501)
+-.--.+..-.+.. ...+..+.|+|.. ..|...+ .+.+..++.. .. ...+..+
T Consensus 334 NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI 399 (928)
T PF04762_consen 334 NYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVI 399 (928)
T ss_pred CCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEE
Confidence 64211000011111 1334558888853 3344333 2555544432 10 0112222
Q ss_pred ecccc--------ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 366 KIHEH--------LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 366 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.|..- .++.-+..+.-.....+.+++|++++..+++-..||.|.+|....
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 22211 111111112222222447999999998899999999999998644
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=4.3e-09 Score=100.36 Aligned_cols=381 Identities=13% Similarity=0.099 Sum_probs=211.8
Q ss_pred cccceEEEEEccC------------CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec
Q 010801 31 DVDIVSAIEFDKT------------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (501)
Q Consensus 31 h~~~v~~v~~s~~------------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (501)
|+..|+.+.|.|- .-+||++...|.|.+||+..+... ..++
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~---------------------------~~l~ 106 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI---------------------------NWLS 106 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh---------------------------hhhc
Confidence 7899999999873 125788889999999999876542 5577
Q ss_pred cCCcchhhccccccccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc-----
Q 010801 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK----- 171 (501)
Q Consensus 99 ~h~~~~~~~~~~~~~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (501)
.|. ++|.+++|-+..+. ..|++-....++.+|+..+|+...-..+.. +.+.|+...+-+.
T Consensus 107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEE
Confidence 777 88999999975444 355566677899999998887544332211 1111111110000
Q ss_pred -----CccccC-------------------------------------CCCCCcccccc--e------------eccCcc
Q 010801 172 -----NFMNEH-------------------------------------NPPSFAHGYHL--E------------WTENMA 195 (501)
Q Consensus 172 -----~~~~~~-------------------------------------~~~~~~~~~~~--~------------~~~~~~ 195 (501)
.+.... ..+....++.- . ..-...
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 000000 00000000000 0 011235
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-CCccc---
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTE--- 268 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--- 268 (501)
+-++|++. ..|+... .-..+.+.-+.+-|++ ..|.+. .||.+.+|-.+......+.- ...+ .....
T Consensus 254 llv~dle~---~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 254 LLVFDLEY---ECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---NASLSMDLGEQVH 326 (1062)
T ss_pred eEEEcchh---hceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc---chhhccccccceE
Confidence 56666665 3344433 2334445556666654 467788 99999999766322211110 0000 00111
Q ss_pred --------ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc-------eeecccccCCC--------cceeee
Q 010801 269 --------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESHGS--------KSFFTE 325 (501)
Q Consensus 269 --------~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~~~ 325 (501)
.+......|..++.++.--.+|.+.+|.+++++....... .|.- ...+.. .+...+
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f-~~~~~~v~k~~l~~LS~dg~ 405 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDF-NLSTKLVGKTSLISLSDDGS 405 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccc-cCceeehhhccccchhhcCC
Confidence 1222233454335555556688899999987643210000 0000 000000 001123
Q ss_pred cccceeEEEEee-----------CCC-------EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcce
Q 010801 326 IIASISDIKFAN-----------DGQ-------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 326 h~~~i~~~~~sp-----------~~~-------~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
|..........| .|+ ++|.|+. |+|.++|+.+ +.....+..|...+
T Consensus 406 h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V-------------- 470 (1062)
T KOG1912|consen 406 HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV-------------- 470 (1062)
T ss_pred CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce--------------
Confidence 555544444332 222 4566765 9999999986 77778888888876
Q ss_pred eeEEEEcCCCcEEE---------EEeCCCeEEEEecCCCCcceEE--EecccCcccceeeccCCccccCccceeeeeccc
Q 010801 387 KFECSVSGDGLHFA---------TGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 387 ~~~~~~s~~~~~l~---------s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
.++.|-...+++- +|+.-+.+.|-|+.+|...... -+....+|+.+..+. .+++ |+..-++
T Consensus 471 -kgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~ 542 (1062)
T KOG1912|consen 471 -KGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRR 542 (1062)
T ss_pred -eeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecc
Confidence 5677766554432 3444456788899988554332 345667888888887 6777 8888888
Q ss_pred ce-eecccc-CCcccccccCCC-eEEEEEc
Q 010801 456 QA-HENSSS-GHHELSYNLSSK-LLHLAWH 482 (501)
Q Consensus 456 ~~-~iw~~~-~~~~~~~~~~~~-i~~~~~s 482 (501)
.- .+|+.. ..........-+ |+.+.|+
T Consensus 543 ~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 543 EPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred cchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 88 999663 222222222334 8899998
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=3.9e-07 Score=83.25 Aligned_cols=253 Identities=11% Similarity=0.065 Sum_probs=142.1
Q ss_pred EeecCCCCEEEEeeC----------CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 121 WCAAPNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~----------d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++ ||++.|+++.. +..|.+||..+.+..........++ ...-........++++++++...+
T Consensus 53 ~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~------~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 53 VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR------FLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch------hhccCccceEEECCCCCEEEEecC
Confidence 65 78888887754 7899999999998877664432211 001112335566778888887777
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC-----
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD----- 265 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 265 (501)
.++..+.+.|+........+.. . ....-...+ +...++-+.||......+...++.. .-..+ -+..
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~v---p--~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~--vf~~~~~~v 195 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDV---P--DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-IKPTE--VFHPEDEYL 195 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeC---C--CCcEEEEec-CCccEEEeecCceEEEEecCCCceE-Eeeee--eecCCcccc
Confidence 7788999999886433222221 1 111111111 1222222333333333333222211 00000 0000
Q ss_pred cccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 266 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 266 ~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
...+ .|.+ +| .++.+..+ |.|.+.|+......... ...+.. ....... ..+.+.-++++|+++.+.
T Consensus 196 ~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~w-----rP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 196 INHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGW-----RPGGWQQVAYHRARDRIY 263 (352)
T ss_pred ccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccccc-----CCCcceeEEEcCCCCEEE
Confidence 0112 4455 66 66655555 99999997654322111 111111 0000000 123455599999998877
Q ss_pred EEc---------C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCeEEE
Q 010801 344 SRD---------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRI 410 (501)
Q Consensus 344 ~~~---------~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~i 410 (501)
... + +.|.++|..+ .+.+..+...... ..++++||++ +|++.. .++.|.+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEE
Confidence 631 1 5799999987 7878777654433 6899999999 777665 5788999
Q ss_pred EecCCCCcc
Q 010801 411 FSHGVGSAG 419 (501)
Q Consensus 411 wd~~~~~~~ 419 (501)
+|..+++.+
T Consensus 327 iD~~t~k~i 335 (352)
T TIGR02658 327 FDAETGKEL 335 (352)
T ss_pred EECcCCeEE
Confidence 999988544
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=1.5e-08 Score=84.63 Aligned_cols=168 Identities=12% Similarity=0.024 Sum_probs=105.8
Q ss_pred eEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
+.++++++|++++++. +...|..|.+......+.-+. ....+..=.+..|+... ..+|++.+||++.|||+|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 7789999999999886 899999999885444322111 22333344678899887 9999999999999999998
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCC--EEEEEc-CCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
...... ... . .-+.|.+.+..+.|++-|. +|.... .+.+.+.|+++ .+..+.+...+...
T Consensus 235 ~~tpm~----~~s-s-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~---- 297 (344)
T KOG4532|consen 235 MATPMA----EIS-S-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE---- 297 (344)
T ss_pred cccchh----hhc-c-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence 643211 111 0 0123789999999998664 344443 48999999996 66555554333320
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
..++.. .++...|+.++.-+.+.+++ .+.=|++..
T Consensus 298 -~~~~tq--~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 298 -RKHNTQ--HIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred -cccccc--ccccccccCCCcccccccch-hhheeeccc
Confidence 000101 11456676666555554443 234455543
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=4.4e-10 Score=116.07 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=140.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~ 109 (501)
|-..|.++.=+|...+-+||+.||.|++|....++.. ..++ +-.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v---------------------------~~~rt~g~-------- 2251 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV---------------------------VCFRTAGN-------- 2251 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------------EEeeccCc--------
Confidence 4577889999999999999999999999998766532 2222 222
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+.+.|+ ..|+.+..+..||.+.+|.+...-. ... .-++....+..+.. ..++...
T Consensus 2252 ----s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk~~---~s~-----------qchnk~~~Df~Fi~--s~~~tag 2309 (2439)
T KOG1064|consen 2252 ----SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPKPY---TSW-----------QCHNKALSDFRFIG--SLLATAG 2309 (2439)
T ss_pred ----chhhhhhhc--ccCCceeeeccCCceeecccCCcce---ecc-----------ccCCccccceeeee--hhhhccc
Confidence 679999998 7889999999999999999873211 111 11111222222222 3333333
Q ss_pred -eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 -WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 -~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+.++.+.+||........++. ..|...++++++.|..++|++| .+|.|++||++ ..+..+.
T Consensus 2310 ~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r-qrql~h~------------ 2373 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR-QRQLRHT------------ 2373 (2439)
T ss_pred cCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEeehH-HHHHHHH------------
Confidence 3456699999998877777776 6899999999999999999999 99999999999 5554432
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
-+. ++ .. .+|++|+..|.++||++....+.
T Consensus 2374 ~~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2374 FQA----LD-TR-EYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred hhh----hh-hh-heeeccCcccceEEEEccccchh
Confidence 111 44 34 78999999999999999886544
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.12 E-value=8.9e-08 Score=86.53 Aligned_cols=148 Identities=14% Similarity=0.245 Sum_probs=113.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCC-cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. +.+.+.-
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------------kr~e~~l----- 401 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------------KRIEKDL----- 401 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------------EEeeCCc-----
Confidence 456788899999999998999999999 899999998864 3344444
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++.+ ++|++++.+-....+.+.|+.++.....-
T Consensus 402 -------g~I~av~vs--~dGK~~vvaNdr~el~vididngnv~~id--------------------------------- 439 (668)
T COG4946 402 -------GNIEAVKVS--PDGKKVVVANDRFELWVIDIDNGNVRLID--------------------------------- 439 (668)
T ss_pred -------cceEEEEEc--CCCcEEEEEcCceEEEEEEecCCCeeEec---------------------------------
Confidence 779999997 89999999988888989999988754432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----CeEEEEECCCCCeeeeeeecCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
....+-|+.++|+|+++++|-+ -+ ..|+++|+. +++.....
T Consensus 440 ----------------------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~vT----- 485 (668)
T COG4946 440 ----------------------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDVT----- 485 (668)
T ss_pred ----------------------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEec-----
Confidence 3456789999999999999987 44 579999999 66665531
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
...+.=.+-+|.|++ ++|..-+.
T Consensus 486 ---T~ta~DfsPaFD~d~-ryLYfLs~ 508 (668)
T COG4946 486 ---TPTAYDFSPAFDPDG-RYLYFLSA 508 (668)
T ss_pred ---CCcccccCcccCCCC-cEEEEEec
Confidence 122223466899998 77765543
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=2e-09 Score=95.01 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+|-+.++.++|+||+++++++ .|..|++-... ..-.+..+ .-+|...|..++.-++ ..|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 5999999999999999999999 99999998877 33333332 5689999999999887 5699999999999
Q ss_pred EEEccCCccc
Q 010801 294 LVDMRQSALC 303 (501)
Q Consensus 294 ~wd~~~~~~~ 303 (501)
+||+++++..
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999765
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=2.1e-07 Score=98.61 Aligned_cols=187 Identities=13% Similarity=0.121 Sum_probs=106.1
Q ss_pred eEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCC--CCCCC------cccceEEEEEecCCCcEEEEEeCCC
Q 010801 221 INSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDD------LTEVITSAEFHPIYCNLLAYSSSRG 290 (501)
Q Consensus 221 v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~------~~~~v~~v~~~p~~~~~l~~~~~dg 290 (501)
.+.++++|+ +.++++. .++.|++||... +... .+.... ....+ .-.....++++|++..++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISD-GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCC-CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 357899994 5555555 789999999873 3222 111000 00111 1134578999999833566666789
Q ss_pred eEEEEEccCCcccccccceeec-ccccCCCccee--------eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC
Q 010801 291 FVRLVDMRQSALCDHSARILRD-AAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 360 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~ 360 (501)
.|++||+.++... ...+ ....+.....+ ...-.....++++++|+++++-. ++.|++||..+ +.
T Consensus 763 ~Irv~D~~tg~~~-----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSR-----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred eEEEEECCCCcEE-----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 9999999876421 1110 00000000000 00012346889999998777665 49999999874 33
Q ss_pred ceeEeecccccccccccc-CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 361 PVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+..+.+...... .+. ...........++++++|+++++-+.++.|++||+.++..
T Consensus 837 -v~tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 -VTTLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -EEEEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 333332211000 000 0000000126899999999999999999999999988743
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=1.8e-08 Score=87.22 Aligned_cols=250 Identities=10% Similarity=0.073 Sum_probs=173.1
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.++..++||. +.|++.... |...-+.+++.|.++|+|--.+ ++.-..+
T Consensus 15 ~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wpsI----------------- 63 (404)
T KOG1409|consen 15 ELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPSI----------------- 63 (404)
T ss_pred hhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCchh-----------------
Confidence 3556677887 778877765 5556788999999999995443 3311110
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
+ .....+++++++.++...|++| ++|++.-+.+...
T Consensus 64 ------------------------------------------~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 64 ------------------------------------------Y-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred ------------------------------------------h-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 0 2345678899999999999999 9999998876522
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
-..... +.....|...+..+.|+-.. +.+++.+.|..+.---.+.+..... ..+.. .
T Consensus 101 fnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~~----------------~ 157 (404)
T KOG1409|consen 101 FNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFET----------------P 157 (404)
T ss_pred hhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEeec----------------c
Confidence 211111 11346789999999999776 8899999888765544444432210 11111 1
Q ss_pred eeEEEEeeCCCEEEEEcC-CcEEEEEeeC-CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 330 ISDIKFANDGQHLLSRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~-~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
-+++.+.-. +...|.. |.|.+-.+.. .-.++.++.+|...+ ++++|.|..+.|++|..|..
T Consensus 158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCc
Confidence 122222111 3334432 6666555432 245678888888876 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+.+||+...+.....+.+|.+.|..+...+ -.+. |.+.+.|+. .+|+.
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVWNM 269 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEEec
Confidence 999999988788899999999999988876 3344 889999999 99943
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=5.1e-07 Score=82.48 Aligned_cols=252 Identities=11% Similarity=0.123 Sum_probs=138.6
Q ss_pred EccCCCEEEEEec----------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcc
Q 010801 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (501)
Q Consensus 40 ~s~~g~~latg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (501)
+||||+.|+++.. +..|.|||..+.+.. ..+.- -.|+|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~--- 102 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL--- 102 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence 9999999887755 689999999987642 22221 111100
Q ss_pred ccccccceeEEEEeecCCCCEEEEee-C-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s-~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....-..++++ +||++++... . +..|.+.|+.+++............++ ..+.-. ......
T Consensus 103 ---~~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy------~t~e~~------~~~~~~ 165 (352)
T TIGR02658 103 ---VGTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF------PTANDT------FFMHCR 165 (352)
T ss_pred ---ccCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE------EecCCc------cEEEee
Confidence 00123356676 8999988775 3 799999999999887765432111100 000000 000001
Q ss_pred cceeccCcceEEEeccCcee--eeeeEeecCCcccceEEE-EecC-CCCEEEEEcCCeEEEEECCCCC----eeeeeeec
Q 010801 187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSI-SNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDM 258 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~--~~~~~~~~~~~~~~v~~l-~~~~-~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~ 258 (501)
++......++.... ......+ ......+..= .|.+ +|+.+..+..|.|.+.|+...+ ..+.++..
T Consensus 166 ------Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 166 ------DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred ------cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 22111111111100 0111111 1111111100 3445 8888888844999999975322 11221100
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEe----------CCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
....-.-......-++++|++ +.+++.. ..+.|.++|..+++.. ..+.. ..
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GH 299 (352)
T ss_pred cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CC
Confidence 000000122334459999998 6665532 1257999999988755 33333 25
Q ss_pred ceeEEEEeeCCC-EEEEEc--CCcEEEEEeeCCCCceeEe
Q 010801 329 SISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 329 ~i~~~~~sp~~~-~l~~~~--~~~i~lwd~~~~~~~~~~~ 365 (501)
.+..++++||++ +|++.. ++.|.++|..+ ++.+.++
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 789999999999 776654 48899999986 8888777
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=5.7e-09 Score=98.68 Aligned_cols=170 Identities=12% Similarity=0.165 Sum_probs=120.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
....+++|+ .+..+++.|+.||.+++..+.+.....-.. -++...
T Consensus 15 vkL~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-----------------------------glaa~s---- 59 (1189)
T KOG2041|consen 15 VKLHCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKS-----------------------------GLAAAS---- 59 (1189)
T ss_pred ceEEEEEEc--ccCCeEEeccccceeEEEEccccCCccccc-----------------------------cccccc----
Confidence 668899997 788899999999999999887643110000 000000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.-.+...+.+|...|.-+.|+.+.+.|.++ .+|.|.+|-+-.+.-+-..+ -......|.+
T Consensus 60 -------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~S 120 (1189)
T KOG2041|consen 60 -------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVS 120 (1189)
T ss_pred -------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEE
Confidence 011111237999999999999999999999 99999999887443332221 2334567899
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|+.+| ..+.....||.|.+=.+..++... +-+++ .....+.|++|.+.++.+- .|.+.
T Consensus 121 msWn~dG-~kIcIvYeDGavIVGsvdGNRIwg---KeLkg---------------~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 121 MSWNLDG-TKICIVYEDGAVIVGSVDGNRIWG---KELKG---------------QLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred EEEcCCC-cEEEEEEccCCEEEEeeccceecc---hhcch---------------heccceeecccHHHHHhhhcCCcEE
Confidence 9999999 999999999999888777654332 11222 2456889999998877764 49999
Q ss_pred EEEee
Q 010801 352 LWDIR 356 (501)
Q Consensus 352 lwd~~ 356 (501)
+||-+
T Consensus 182 lydnq 186 (1189)
T KOG2041|consen 182 LYDNQ 186 (1189)
T ss_pred Eeccc
Confidence 99975
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.2e-07 Score=90.31 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=115.6
Q ss_pred cceEEEEEccCCCE-EEEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 33 ~~v~~v~~s~~g~~-latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..+....|+|||+. ++..+. +..|.++|+.+++.. .+.. ..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------------------------~lt~---~~------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------------------------KIAS---SQ------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------------------------EEec---CC-------
Confidence 46778999999985 665443 346888898877541 1221 22
Q ss_pred ccccccceeEEEEeecCCCCEEEEee-C--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST-N--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s-~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+......|+ |||+.++... . +..|.++++.+++...+.
T Consensus 233 -----g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT-------------------------------- 273 (419)
T PRK04043 233 -----GMLVVSDVS--KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT-------------------------------- 273 (419)
T ss_pred -----CcEEeeEEC--CCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--------------------------------
Confidence 445567787 7888776543 2 346777777766543321
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+........|+|||+.|+.. ..+ .|.+.|+. ++...++.
T Consensus 274 ------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt----- 317 (419)
T PRK04043 274 ------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV----- 317 (419)
T ss_pred ------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc-----
Confidence 111112235799999887764 333 57777877 33333321
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCC---------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
..+. ....|+|+| +.|+..... ..|.+.|+.++.. +.+.. ......
T Consensus 318 -~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~ 372 (419)
T PRK04043 318 -FHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQF 372 (419)
T ss_pred -cCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCC
Confidence 1111 124899999 766665543 3677888877643 22222 012335
Q ss_pred EEEeeCCCEEEEEc-C-C--cEEEEEeeCCCCceeEeec
Q 010801 333 IKFANDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~-~--~i~lwd~~~~~~~~~~~~~ 367 (501)
..|+|||+.|+... . + .+.+.++. +.....+..
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~ 409 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL 409 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence 88999999887543 2 3 45555654 554454543
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=7e-09 Score=88.44 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=141.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc---eeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|++|.|- ..|.++++|...|.|.+|.-.... .+...+++..+ +..
T Consensus 27 d~ItaVefd--~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe--------------------~EF-------- 76 (460)
T COG5170 27 DKITAVEFD--ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE--------------------LEF-------- 76 (460)
T ss_pred ceeeEEEec--cccceEeecCCCceEEEeecccccccchhhhhhhcccc--------------------cch--------
Confidence 679999995 778899999888999999765432 11111111100 000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC---CEEEEEcCCeEEEEECCCC------------------
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEIS------------------ 249 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~d~~i~iwd~~~~------------------ 249 (501)
..++. ..-...|..+.|..++ .+|+++.|.+|++|.+...
T Consensus 77 -----------------DYLkS--leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~ 137 (460)
T COG5170 77 -----------------DYLKS--LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM 137 (460)
T ss_pred -----------------hhhhh--ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence 00000 1223467778886543 3566669999999987632
Q ss_pred C-ee--------------eeeeecCCC--CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 250 D-QC--------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 250 ~-~~--------------~~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
+ .. ..++..++. ....|...|.++.|+.+. +.+++ ..|=.|.+|++.-..... .+.+.
T Consensus 138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF---nIVDi 212 (460)
T COG5170 138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF---NIVDI 212 (460)
T ss_pred CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce---EEEec
Confidence 0 00 011112222 124577778999999987 66665 457789999886543221 22221
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCC--EEEEEcCCcEEEEEeeCCC-----CceeEeeccccccccccccCCCCCcc
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDS-----TPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~~~~~~~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
.|. .......-|++..|+|... ++.+.+.|.|++-|++... +.+.........+.. -.+.+.
T Consensus 213 ---KP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f-----f~eivs 281 (460)
T COG5170 213 ---KPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF-----FEEIVS 281 (460)
T ss_pred ---cCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh-----HHHHhh
Confidence 000 0011234588889999643 3334456999999998311 111111110000000 001111
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
.+..+.|+++|+++++-+. -+|+|||+...+...++..-|..
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 2368999999999998877 58999999887766677766643
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.6e-09 Score=100.29 Aligned_cols=299 Identities=14% Similarity=0.146 Sum_probs=180.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.-.+.+.++..+|.|+-+|.++.-| +.|-|+...-. ..+.+..+ +|
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~---tp------- 67 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHI---TP------- 67 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------Cceeeecc---Cc-------
Confidence 3468899999999999999998776 56677664311 22222222 22
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.|-.+.|++.+.-.+-++......-.+|++....-.
T Consensus 68 ----w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~--------------------------------------- 104 (1081)
T KOG0309|consen 68 ----WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN--------------------------------------- 104 (1081)
T ss_pred ----chhcceecccCCCCceeEEecCcchhhhhhhhcCCcc---------------------------------------
Confidence 2377788987665555555544455667887543210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+.-++.+|...|+.+.|+|... .++++ .|-.+..||+++....+..+ ..-.
T Consensus 105 -------------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~w~ 158 (1081)
T KOG0309|consen 105 -------------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SSWR 158 (1081)
T ss_pred -------------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------eccc
Confidence 11111269999999999998755 55667 89999999999777666543 2223
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~ 345 (501)
.....|+|+-..++.+++ +..+.|.+||++.+.... .. +++|...|+.+.|..- ++.+-+.
T Consensus 159 s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl---~s-------------~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPL---CS-------------LKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred ccCceeeecccCcchhhh-ccCCceEEEeccCCCcce---EE-------------ecccceeeehHHHhhhhhhhhcccC
Confidence 445789999776455554 666789999999875431 11 2335677888888753 3334344
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC--CcEEE---------EEeCCCeEEEEecC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFA---------TGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~---------s~~~dg~i~iwd~~ 414 (501)
.|++|+.||.....+.-........++ +.-.+-|= |.++. --.-+..-..|+..
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred CCCceeeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence 679999999864222111111111111 23333332 22222 11122333446665
Q ss_pred CCCcceEEEecccCcccceeeccCCc--cccCcc-ceeeeecccce-eecccc
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPR--ARRSSL-SNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~-~~l~~~~~~~~-~iw~~~ 463 (501)
++-..+.++.+|.+.|....+-.... +.+... -.|++=++|.. ++|..+
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 56566899999999887766643211 111000 12889999999 999555
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=2.9e-09 Score=100.89 Aligned_cols=238 Identities=15% Similarity=0.166 Sum_probs=157.8
Q ss_pred EEEecCC--CCEEEEE-cCCeEEEEECCCC-CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 223 SISNNSD--CETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 223 ~l~~~~~--~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
...|+|. -.+-++. ....-.+|++... .+.+..+ +.+|...|+.+.|+|..+..+++++.|-.++.||++
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeeecc
Confidence 4455543 2344444 6666778887632 2233332 678999999999999998899999999999999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
+..... ..+.. -......+.|+- ++..+|+...+.|++||++.++.++..+++|...+
T Consensus 146 Sp~~p~---ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v----- 204 (1081)
T KOG0309|consen 146 SPHRPF---YSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV----- 204 (1081)
T ss_pred CCCcce---eeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee-----
Confidence 864321 11111 123567788885 45566665558999999999889999999876654
Q ss_pred cCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeec---
Q 010801 378 LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL--- 453 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--- 453 (501)
..++|..- ...+.+.+.||+|+.||.+..............+++.-.+.|-.+|+. ++-..-+.
T Consensus 205 ----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~--~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 205 ----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC--IMPMVGGNMVP 272 (1081)
T ss_pred ----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE--eccccCCeeee
Confidence 56666542 345788999999999999876555566667777888888888766654 11111110
Q ss_pred ---ccce-eec---cccCCcccccccCCCeEEEEEccCCC----------EEEEee-CCeEEEE
Q 010801 454 ---YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH 499 (501)
Q Consensus 454 ---~~~~-~iw---~~~~~~~~~~~~~~~i~~~~~sp~~~----------~la~~~-~~~~~i~ 499 (501)
.+.. ..| .....+....+|...|...-|-..+. .|++=+ +-.+.+|
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 1111 233 23345555668888887777765443 566666 3447777
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.3e-09 Score=98.32 Aligned_cols=218 Identities=21% Similarity=0.256 Sum_probs=142.8
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccC
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
+..+.||. ..|..++-. .+.+-+++++.|++|++|.++... ...
T Consensus 728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~--------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIG--------------------- 772 (1034)
T ss_pred eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccc---------------------
Confidence 45677888 788888654 567789999999999999987532 111
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCee
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 252 (501)
...|..+| ..|..+|.++.|-.+.+.++++ |+.|.+||.-.+...
T Consensus 773 ---------------------------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 773 ---------------------------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLL 817 (1034)
T ss_pred ---------------------------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchh
Confidence 12355556 7999999999999888777665 678999997633332
Q ss_pred eeeeecCCCCCCCcccceEEEEEecC-CCcE-EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPI-YCNL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
.+.. -....+.+..+..-|+ ...+ ++.++...+|+++|.+..+.. ..+.. .+.+ +....+
T Consensus 818 aq~~------dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cna~-------~Pna~~ 879 (1034)
T KOG4190|consen 818 AQME------DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT----CELKV-CNAP-------GPNALT 879 (1034)
T ss_pred Hhhh------cCcccCCCceeEecccCcchheeeeccchhhheeeecccccce----eeEEe-ccCC-------CCchhe
Confidence 2221 1111222333333333 2133 444477899999999987543 22222 1111 123568
Q ss_pred eEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 331 SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+++..|.|++++++ +.|.|.+.|.++ ++.+..+..-.-.. ..++ .|..+.|+....|.++.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHsla 942 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLA 942 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeE
Confidence 899999999999998 569999999996 88776665332211 1232 34556777777788888
Q ss_pred E-EecCCC
Q 010801 410 I-FSHGVG 416 (501)
Q Consensus 410 i-wd~~~~ 416 (501)
+ |....+
T Consensus 943 VnWhaldg 950 (1034)
T KOG4190|consen 943 VNWHALDG 950 (1034)
T ss_pred eeehhcCC
Confidence 8 877665
No 283
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.3e-08 Score=87.93 Aligned_cols=325 Identities=15% Similarity=0.131 Sum_probs=200.1
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.-|.+.|+.+..+. .+++.+++.||.++.|.-..- ...+++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHL------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHH-------
Confidence 34788888887764 679999999999999984421 1334667788888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++.+ .++-.+.+.+. |..++++|+++-...........+ +...+.....+...+.+
T Consensus 54 -----~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a~wv~skGd~~s~IA 115 (558)
T KOG0882|consen 54 -----GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFAEWVTSKGDKISLIA 115 (558)
T ss_pred -----HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------CceEEecCCCCeeeeEE
Confidence 888888887 67888888776 999999999886655443332222 11112122222222333
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee---eeecCCC--
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS-- 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~---~~~~~~~-- 261 (501)
.....++.+.++|-..... ....+..-|..+|.++.+++-+..+++. ..|.|.-|..+..-+..+ .+..+..
T Consensus 116 Vs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred eecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 3344566777777665332 2222225789999999999999999998 899999998872111000 0111111
Q ss_pred --CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC-cc--------------eee
Q 010801 262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KS--------------FFT 324 (501)
Q Consensus 262 --~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~ 324 (501)
.+..-.....++.|+|++ ..+.+-+.|..|++++.+++++....-.........+.. .. .+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 122234567899999999 999999999999999999987653111111110000000 00 012
Q ss_pred ecc-cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCC--------------CCCcceeeE
Q 010801 325 EII-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--------------NDSIFDKFE 389 (501)
Q Consensus 325 ~h~-~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 389 (501)
.|. ..-..+.|...|++|+.|+---|++.++.+ +...+.+--.+........+|. .+. -.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n----p~ 347 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN----PL 347 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC----cc
Confidence 222 344677899999999998876689999986 5554443211111110001110 000 12
Q ss_pred EEEcCCCcEEEEEeCCCeEEEE
Q 010801 390 CSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 390 ~~~s~~~~~l~s~~~dg~i~iw 411 (501)
+.+.+|..+++++-...++++|
T Consensus 348 ~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 348 LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cccCCCCeEEEeeeecceEEEE
Confidence 4466777788888888888888
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.7e-06 Score=82.56 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=86.2
Q ss_pred ceEEEEecCCCCEEEEE--c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CC--eE
Q 010801 220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FV 292 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i 292 (501)
......|+|||+.++.. . +..|.++|+. ++.... +..+........|+||| +.|+..+. .+ .|
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYPNI 303 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCceE
Confidence 34456799999887754 3 3568888887 343333 22222223345799999 66665553 33 57
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C---------CcEEEEEeeCCCCce
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---------MNLKLWDIRMDSTPV 362 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---------~~i~lwd~~~~~~~~ 362 (501)
.++|+.+++.. ++... +. ....|+|||++|+... . ..|.+.|+.. + ..
T Consensus 304 y~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~ 361 (419)
T PRK04043 304 FMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YI 361 (419)
T ss_pred EEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-C-Ce
Confidence 77787766432 11111 11 1248999999988542 1 2577777764 3 33
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-C--eEEEEecCC
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV 415 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~ 415 (501)
..+...... ....|+|||+.|+..+.+ + .+.+.+++.
T Consensus 362 ~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 362 RRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 444332111 358899999988765543 2 355666654
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.92 E-value=2.5e-06 Score=81.36 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=79.2
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
..++.+ .++.+..||.++++...+. ........ .... .+.... + ..++.+..+|.+..+|.++++.....
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~-~~~~-~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~--- 216 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTY-SRVTPALT-LRGS-ASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQ--- 216 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEE-ccCCCcee-ecCC-CCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeee---
Confidence 355556 8899999999855543332 11100000 0000 111122 2 35677888899999999988643210
Q ss_pred eecccccCCCcceeeecccce-eEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.. . .+...... .....+ ....+ .++..++++.++.++.||.++ ++.+....... . .
T Consensus 217 -~~-~-~~~g~~~~-~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~-~----------------~ 273 (377)
T TIGR03300 217 -RV-A-LPKGRTEL-ERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASS-Y----------------Q 273 (377)
T ss_pred -cc-c-cCCCCCch-hhhhccCCccEE-ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCC-c----------------c
Confidence 00 0 00000000 000001 11112 134344444569999999986 66554443111 1 1
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
.... ++..++.++.||.|+.+|..+++.+
T Consensus 274 ~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 274 GPAV--DDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred CceE--eCCEEEEECCCCeEEEEECCCCcEE
Confidence 2222 4567788889999999999988543
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=5.7e-06 Score=70.70 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=111.1
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC-----CcEEEEEeCCCeEE
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVR 293 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~dg~i~ 293 (501)
.=+.++|+||+.+||.+ ..|+|++||+. +..... +.............|..+.|-+.. ...|++-..+|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~-I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFV-IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEE-cCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34579999999999999 99999999998 444432 211111122334667777775432 13577778888888
Q ss_pred EEEccCCccc-ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-C---------cEEEEEeeCCCC
Q 010801 294 LVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-M---------NLKLWDIRMDST 360 (501)
Q Consensus 294 ~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~---------~i~lwd~~~~~~ 360 (501)
-|-+..+... .+....+.- ...+...|.++.++|..++|+.|+ . . -+.-|.+-. +.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~ 191 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DS 191 (282)
T ss_pred eEEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-CC
Confidence 8876443211 111112211 122467899999999988887653 1 1 366777653 33
Q ss_pred ceeE-eeccccccc---------cccc-------cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 361 PVAT-FKIHEHLRP---------KLCD-------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 361 ~~~~-~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+... ....+..+. .+.. ....+.+ ..|..||||+.||+...+|.|.+|++.+-+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 2221 111111110 0000 1123344 699999999999999999999999998763
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=102.54 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=136.5
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
..+-..|.++.-+|...+.++| .||.|++|....+.+.+ .+ ...+. ..|+.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-~~-----rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-CF-----RTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-Ee-----eccCc-chhhhhhhcccC-CceeeeccCCcee
Confidence 3556678888889988899999 99999999988444433 22 12333 789999999999 9999999999999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE---cC-CcEEEEEeeCCCCceeEeeccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~---~~-~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+|.... +.+.. ...|........|-. ..++++ +| +.+.+||.-.....-..-..|.
T Consensus 2277 l~q~~p--------k~~~s----------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASP--------KPYTS----------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred ecccCC--------cceec----------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 998763 22222 133566777777774 556654 24 8999999754333222236676
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcccee
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
+.. +.+++.|..++|++||.+|.|++||+... .+.++++. .. ...+ +
T Consensus 2337 ~ga---------------T~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~---~~~~-----f 2383 (2439)
T KOG1064|consen 2337 GGA---------------TVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD---TREY-----F 2383 (2439)
T ss_pred CCc---------------eEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh---hhhe-----e
Confidence 655 78999999999999999999999999865 33344433 10 1112 8
Q ss_pred eeecccce-eeccccCC
Q 010801 450 TRGLYRQA-HENSSSGH 465 (501)
Q Consensus 450 ~~~~~~~~-~iw~~~~~ 465 (501)
++|+.+|. +||+.++.
T Consensus 2384 ~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eccCcccceEEEEcccc
Confidence 99999999 99966643
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.2e-08 Score=93.76 Aligned_cols=178 Identities=14% Similarity=0.168 Sum_probs=120.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|+..|+.++--.+.+-+++++.|.+|++|.+...-- + .....+.-+++.|+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD------------~--------~~tsaCQfTY~aHk------- 784 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD------------E--------IGTSACQFTYQAHK------- 784 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC------------c--------cccceeeeEhhhcc-------
Confidence 46889999888777788889999999999999873211 0 01223556788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.+|.++-|. .+-++++ +.|+.|.+||.--++........
T Consensus 785 -----k~i~~igfL--~~lr~i~--ScD~giHlWDPFigr~Laq~~da-------------------------------- 823 (1034)
T KOG4190|consen 785 -----KPIHDIGFL--ADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA-------------------------------- 823 (1034)
T ss_pred -----Ccccceeee--eccceee--eccCcceeecccccchhHhhhcC--------------------------------
Confidence 889999997 5544544 45789999998766543321110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.. .+....|.++. +-+...+.+| ...+|+++|.+..+- ...+.+ .+-.+.
T Consensus 824 ------------pk------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kV--cna~~P 875 (1034)
T KOG4190|consen 824 ------------PK------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKV--CNAPGP 875 (1034)
T ss_pred ------------cc------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEe--ccCCCC
Confidence 00 12233344443 2244455444 788999999884432 221111 134566
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
+..+++++..+.| +.++.+-.+|.|.+.|.+++..+
T Consensus 876 na~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 876 NALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred chheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee
Confidence 7789999999999 99999999999999999999654
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=5.7e-06 Score=87.95 Aligned_cols=189 Identities=10% Similarity=0.112 Sum_probs=105.9
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCC---CCCCC-------cccceEEEEEecCCCcEEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---SNMDD-------LTEVITSAEFHPIYCNLLAYS 286 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~-------~~~~v~~v~~~p~~~~~l~~~ 286 (501)
.....+++.++++.|+++ .++.|+.+|.. .+.. .++.... ....+ .-.....++++|++..++++.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~-~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFV-NETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecC-CCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 345678999988877665 56889999987 3332 2211000 00000 012346899999543777777
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccC--CCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEeeCCCCce
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~~~~~~~ 362 (501)
+.++.|++||..++.. ..+.+..... .........-.....++++|+++.|..+ . ++.|++||+.+ +..
T Consensus 702 ~~~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~- 774 (1057)
T PLN02919 702 AGQHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS- 774 (1057)
T ss_pred CCCCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-
Confidence 8889999999887643 1222100000 0000000011345779999999866655 3 38999999875 332
Q ss_pred eEeecccccc-ccccccCCC------CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 363 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..+.+..... .....+... ........++++++|.++++-+.+++|++||..++
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 1111100000 000000000 00001157999999999999999999999999876
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=1.7e-06 Score=79.22 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=160.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
-++..++|| |.|.+|++....+ |.+|.-.........
T Consensus 33 ~p~~~~~~S--P~G~~l~~~~~~~-V~~~~g~~~~~l~~~---------------------------------------- 69 (561)
T COG5354 33 WPVAYVSES--PLGTYLFSEHAAG-VECWGGPSKAKLVRF---------------------------------------- 69 (561)
T ss_pred cchhheeec--Ccchheehhhccc-eEEccccchhheeee----------------------------------------
Confidence 668889998 8899988887654 889976654311111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c---------------CCeEEEEECCCCCeeeeeee
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~ 257 (501)
. ...|..+.|+|.+++|.+= . ++.+.+||+. .+.++..+
T Consensus 70 ----------------------~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf- 124 (561)
T COG5354 70 ----------------------R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSF- 124 (561)
T ss_pred ----------------------e-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeec-
Confidence 1 1346667778887777762 2 2358999999 55555432
Q ss_pred cCCCCCCCcccc--eE-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE
Q 010801 258 MKPSNMDDLTEV--IT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (501)
Q Consensus 258 ~~~~~~~~~~~~--v~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 334 (501)
.....+ .+ -+.|+-+. +++|-. ....++++++ +.+......+.+.. ..|....
T Consensus 125 ------~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~---------------~gi~dFs 180 (561)
T COG5354 125 ------NGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP---------------VGILDFS 180 (561)
T ss_pred ------cccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccc---------------cceeeEE
Confidence 222222 33 67788887 666544 3457999998 54433222222222 4688889
Q ss_pred EeeCC--CEEEE------EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---
Q 010801 335 FANDG--QHLLS------RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--- 403 (501)
Q Consensus 335 ~sp~~--~~l~~------~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--- 403 (501)
|+|.| ..|+. +....+++|.+.. +..+.+-.-..... ..+.|.+.|++|+.--
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~~---------------~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVSG---------------VQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeecc---------------cEEEEecCCceEEEEEEEe
Confidence 99864 34443 2238899999974 55443322111110 4789999998876321
Q ss_pred --------CCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCC
Q 010801 404 --------YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSS 474 (501)
Q Consensus 404 --------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~ 474 (501)
....++|+++..... .......++|...+|.|..+..- +++|-.+.. .+++....+. ....++
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~-----vi~g~~pa~~s~~~lr~Nl~-~~~Pe~ 316 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFA-----VISGYMPASVSVFDLRGNLR-FYFPEQ 316 (561)
T ss_pred eecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCcee-----EEecccccceeecccccceE-EecCCc
Confidence 135688888874322 22226689999999999644433 666666666 6665554432 233444
Q ss_pred CeEEEEEccCCCEEEEee
Q 010801 475 KLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 475 ~i~~~~~sp~~~~la~~~ 492 (501)
+=+.+-|+|.++++.+++
T Consensus 317 ~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 317 KRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccccccccCcccEEEEec
Confidence 455677788887777765
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=8.5e-08 Score=79.96 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred ceeEEEEeeCCCEE-EEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCC
Q 010801 329 SISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS 405 (501)
Q Consensus 329 ~i~~~~~sp~~~~l-~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d 405 (501)
.|.+++-+|..+.+ ++|++ |.+-+||.+....+...+..|...+ +.+.|+| ++..|+++++|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i---------------~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI---------------WEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh---------------hheeccCCCchheeEecCC
Confidence 48899999976555 45654 9999999987555666677888766 7899999 57889999999
Q ss_pred CeEEEEecCC
Q 010801 406 NLLRIFSHGV 415 (501)
Q Consensus 406 g~i~iwd~~~ 415 (501)
|.+.-||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999875
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=87.44 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=111.1
Q ss_pred EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee
Q 010801 232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (501)
Q Consensus 232 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 311 (501)
.+.+|-+..|-+-|++++-+. .+. ....|.++.|...+ +++..|+.+|.|..+|++.+.... .+.
T Consensus 227 hfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~----~~~ 291 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGN----GWC 291 (425)
T ss_pred eecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCC----Ccc
Confidence 344557778888888843321 133 56678999999887 999999999999999999863221 111
Q ss_pred cccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcce
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
. .---|...|+++..-. ++++|.+.+ +|+|++||++. .+. +.++.||......
T Consensus 292 a---------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~------------ 349 (425)
T KOG2695|consen 292 A---------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY------------ 349 (425)
T ss_pred e---------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc------------
Confidence 1 0123567888888776 677777665 59999999986 666 8889999775422
Q ss_pred eeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 387 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.-+...+....+++++.|...|||.++.+ .+..+++
T Consensus 350 -l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tip 385 (425)
T KOG2695|consen 350 -LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIP 385 (425)
T ss_pred -cccccccccceEEEccCeeEEEEEecccC-ceeeccC
Confidence 24666777889999999999999999988 3434444
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=5.5e-08 Score=86.15 Aligned_cols=160 Identities=12% Similarity=0.130 Sum_probs=97.6
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..+..++++++++++ .+....++++....+..+.++.. .+. ..-+++.+..+. .....+..-|.++-+|+-+-
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 345568889899988 77776677666333212221111 011 122334444443 33333333333333333221
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeE-eecccccccccccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDL 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~ 378 (501)
.. .....+-||-..+..++++||+++|++++ |..|++-.... -..+.. .-||...+
T Consensus 140 ~~---------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV------ 197 (390)
T KOG3914|consen 140 DS---------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV------ 197 (390)
T ss_pred cc---------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe------
Confidence 00 11122346788999999999999999996 69999987753 333333 35688876
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..++.-++ ..|++||.|++|++||+.+++.+
T Consensus 198 ---------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 198 ---------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ---------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 46777654 56899999999999999999766
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=1.3e-05 Score=71.46 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=134.9
Q ss_pred EEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 37 ~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
++.|.+ +|.++++-...+.|..|+..+++. ..+.. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence 578888 677777766789999999887643 11111 22
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
...+++.. ++ ..|+.+...+ +.++|..+++...+.....
T Consensus 42 ~~G~~~~~-~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~-------------------------------------- 80 (246)
T PF08450_consen 42 PNGMAFDR-PD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD-------------------------------------- 80 (246)
T ss_dssp EEEEEEEC-TT-SEEEEEETTC-EEEEETTTTEEEEEEEEET--------------------------------------
T ss_pred CceEEEEc-cC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC--------------------------------------
Confidence 55666651 34 5666666554 5555988876554432100
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC--------CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
-.......+.+++.|+|++.++. .. +.|..++.. ++.... ...
T Consensus 81 ------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~ 132 (246)
T PF08450_consen 81 ------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG 132 (246)
T ss_dssp ------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred ------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence 01135677899999999977774 22 446666655 332221 112
Q ss_pred ccceEEEEEecCCCcEEE-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
-...+.++|+|++ +.|+ +-+..+.|..+++..........+.+.. +..-.+....+++..+|++.++.
T Consensus 133 ~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 133 LGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEE
T ss_pred cccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEE
Confidence 3456899999999 6554 5667889999998754321111122211 00011247889999999877765
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEE
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT 401 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s 401 (501)
- .+.|.++|.+ ++.+..+....... ++++|. ++.+.|..
T Consensus 202 ~~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 202 WGGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYV 242 (246)
T ss_dssp ETTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEE
T ss_pred cCCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEE
Confidence 4 4999999975 88888777653322 789994 56555543
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=3.9e-05 Score=68.33 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred eEEEEec-CCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC-cccceEEEEEecCCCcEEEEEeCC--------C
Q 010801 221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 290 (501)
Q Consensus 221 v~~l~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d--------g 290 (501)
...+++. +++ .++.+..+.+.++|.. .++...+.... ... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 665 5555533445555888 44433332211 112 34567899999999 877766543 5
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCcee---Ee
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF 365 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~---~~ 365 (501)
.|..++.. ++.. ..... -...+.++|+|+++.|...+ . +.|..+++...+..+. .+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 57777766 3321 22222 24578999999999887653 3 8899999875333222 12
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
........ ..-.+++..+|++.++.-..+.|.+++.+ |+ +...+......+++++|.
T Consensus 177 ~~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 177 IDFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EE-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEE
T ss_pred EEcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEE
Confidence 11111100 00479999999998888889999999987 53 335554444466666664
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.4e-06 Score=83.78 Aligned_cols=258 Identities=16% Similarity=0.168 Sum_probs=162.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...-.++.|+|.| +||.|+. ..|.|-|..+-+ .+..+.-|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~---------- 55 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ---------- 55 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence 4447889999977 6888875 478888866433 446677787
Q ss_pred cccceeEEEEeecC--------C--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 112 IEEKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 112 ~~~~V~~v~~~~~~--------~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|+.|+|.|.+ . .-+|+++.-.|.|.+||...+..+..+
T Consensus 56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l---------------------------- 105 (1062)
T KOG1912|consen 56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL---------------------------- 105 (1062)
T ss_pred --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh----------------------------
Confidence 889999998632 1 124555667799999998876543322
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCC-EEEEE-cCCeEEEEECCCCCeeeeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (501)
..|..++..++|-+ +.+ .|++- ...++.+|+..+++...+
T Consensus 106 ---------------------------------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-- 150 (1062)
T KOG1912|consen 106 ---------------------------------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-- 150 (1062)
T ss_pred ---------------------------------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--
Confidence 56677778888854 443 44444 788999999996666554
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc---ccceeecccccCC-Ccceeee--c----
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHG-SKSFFTE--I---- 326 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~--h---- 326 (501)
.........|+.+.|-..+.+..-+..|.+.+-+.-..+.... ..++-..|.+.+. .+..-.+ +
T Consensus 151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 2333455677889987767777777788887776543322211 1122222111000 0000000 0
Q ss_pred -----ccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC--cE
Q 010801 327 -----IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LH 398 (501)
Q Consensus 327 -----~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~ 398 (501)
......++|+|.-+.++-.. -..+.++|++. ..++.......+.. .-+.+-|++ ..
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDA 288 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcce
Confidence 01123456778655444333 37899999986 77777776555533 246777765 46
Q ss_pred EEEEeCCCeEEEEecCC
Q 010801 399 FATGSYSNLLRIFSHGV 415 (501)
Q Consensus 399 l~s~~~dg~i~iwd~~~ 415 (501)
|+++-.||.+.||-.+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 89999999999997664
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=9.6e-07 Score=74.18 Aligned_cols=229 Identities=10% Similarity=-0.041 Sum_probs=135.7
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
.+|+.| ..|...+|...+.....++ ...|...|+-+.=.-+...-+..++.|.++++.++..+... .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~-------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----~- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQ-------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----F- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceee-------ecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----c-
Confidence 477777 9999999999855544443 22333332222111121134667788999999988765432 1
Q ss_pred eecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..|.. .-.+.++++++|++++++.+| ..|.+|.+..++..+..+......- .- .
T Consensus 153 -~~h~~-----------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D----------~g---F 207 (344)
T KOG4532|consen 153 -AVHNQ-----------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD----------HG---F 207 (344)
T ss_pred -eeecc-----------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC----------Cc---e
Confidence 11000 123789999999999998776 9999999986555444322221111 11 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE----EEecccCcccceeeccCCccccCccceeeeecccceeecccc-
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS- 463 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~- 463 (501)
+.+|+.....+|++..||++.|||+.....+.. +-..|.+.++.+.|++...-.+ + +.+-......+-+..
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL--L--f~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL--L--FISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE--E--EEecCcceEEEEEccc
Confidence 789999999999999999999999987544322 2345788899999987422221 0 222221111222111
Q ss_pred ----CCccc----cccc-CCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 464 ----GHHEL----SYNL-SSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 464 ----~~~~~----~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.+.. ...| ++.|..-.|+.++..+-+.++..++=|+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 00000 1122 2347777788777777777766655554
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=1.4e-07 Score=78.66 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
..|.+++-+|..+.+ ++| +||.+-+||.+....+.. .+..|...|+.+-|+|..+..|+++++||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 348889888866555 556 999999999994433322 26789999999999999889999999999999999
Q ss_pred ccC
Q 010801 297 MRQ 299 (501)
Q Consensus 297 ~~~ 299 (501)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=4.9e-06 Score=71.11 Aligned_cols=183 Identities=11% Similarity=0.140 Sum_probs=106.3
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.=+-++||||+.+||.+...|+|++||+.+.+...+. .++... ....
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~---------------------------p~~~~~------~d~~ 91 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP---------------------------PAMSFP------GDLS 91 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC---------------------------cccccC------Cccc
Confidence 3578999999999999999999999999875442000 011000 0112
Q ss_pred cceeEEEEeecC-C---CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 114 EKINRVRWCAAP-N---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~-~---~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|-.+.|.... + ...|++-..+|.++-|-+..+......+
T Consensus 92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e----------------------------------- 136 (282)
T PF15492_consen 92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE----------------------------------- 136 (282)
T ss_pred cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-----------------------------------
Confidence 567777776311 1 2246666677777777653322111100
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC----------eEEEEECCCCCeeeeeee
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL----------RINLWNLEISDQCFNIVD 257 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~----------~i~iwd~~~~~~~~~~~~ 257 (501)
...-.+...+...|.++.++|..++|+.| ... -+.-|.+-....-.+.+.
T Consensus 137 ------------------~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 137 ------------------NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred ------------------eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 00001113346678888888877777664 211 245565442221111110
Q ss_pred -----------------cCCC----CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 258 -----------------MKPS----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 258 -----------------~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
+... ........|..+..+||| ++|++...+|.|.+|++.+-++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhh
Confidence 0000 012235678999999999 99999999999999999876544
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.5e-08 Score=98.16 Aligned_cols=202 Identities=13% Similarity=0.181 Sum_probs=143.1
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
++..+.|+.|+ +.-+|++|+ .+.++|+.|+..|.|+++++.+|......
T Consensus 1091 Fr~w~~frd~~------------~~fTc~afs--~~~~hL~vG~~~Geik~~nv~sG~~e~s~----------------- 1139 (1516)
T KOG1832|consen 1091 FRSWRSFRDET------------ALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSSGSMEESV----------------- 1139 (1516)
T ss_pred cccchhhhccc------------cceeeEEee--cCCceEEeeeccceEEEEEccCccccccc-----------------
Confidence 44556677777 889999998 77889999999999999999988744322
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c-CCeEEEEECC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLE 247 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~ 247 (501)
.+|.+.|+-+.-+.+|..+++. . .--..+|+..
T Consensus 1140 --------------------------------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1140 --------------------------------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred --------------------------------------------cccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 6899999999999999888774 3 3367899988
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
........ + ..-.++.|+... ..-+.|+......+||+.++..+.. .+.. . .+..
T Consensus 1176 s~~~~~Hs-------f----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~---------~~~~ 1230 (1516)
T KOG1832|consen 1176 STGGPRHS-------F----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-T---------VTSS 1230 (1516)
T ss_pred cccCcccc-------c----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-c---------hhhh
Confidence 65544432 1 123578888765 5556666667899999999876642 2222 0 0011
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..-+.+.|+|+..+++-- | .+||++. .+.++.|...... ..-.|+|.|..++..+.
T Consensus 1231 y~~n~a~FsP~D~LIlnd--G--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLILND--G--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred hhccccccCCCcceEeeC--c--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech---
Confidence 233678899988877642 2 5899986 4666666544322 25679999999988876
Q ss_pred EEEEecCCCCc
Q 010801 408 LRIFSHGVGSA 418 (501)
Q Consensus 408 i~iwd~~~~~~ 418 (501)
|||+.+.+.
T Consensus 1287 --IwD~RTF~l 1295 (1516)
T KOG1832|consen 1287 --IWDMRTFKL 1295 (1516)
T ss_pred --hhhhHHHHH
Confidence 899987633
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=2.8e-05 Score=68.68 Aligned_cols=242 Identities=16% Similarity=0.226 Sum_probs=137.9
Q ss_pred cceEEEEEcc-CCCEEEEEecCCc-EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 33 DIVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 33 ~~v~~v~~s~-~g~~latg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
.....++.+| ++..+|.+-.-|+ ..+||..+++.. +.+.. ..-..|.||-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~a------------~~gRHFyGHg--------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLWA------------PPGRHFYGHG--------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEcC------------CCCCEEecCE---------
Confidence 3455678888 5667777776664 567898887653 11100 1114566775
Q ss_pred ccccceeEEEEeecCCCCEEEEee-----CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s-----~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.|+ +||++|++.- ..|.|-|||...+ ..++-+
T Consensus 57 ---------~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E------------------------------- 93 (305)
T PF07433_consen 57 ---------VFS--PDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGE------------------------------- 93 (305)
T ss_pred ---------EEc--CCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeE-------------------------------
Confidence 676 8999998863 4578889998832 222211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcC--------CeEEEEECCCCCeeeeeee
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d--------~~i~iwd~~~~~~~~~~~~ 257 (501)
+ ..|.-.-..+.+.|||+.|+++.. |..++ ++.+....+..++
T Consensus 94 ---------------------------~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld 144 (305)
T PF07433_consen 94 ---------------------------F-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLD 144 (305)
T ss_pred ---------------------------e-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEe
Confidence 1 334444455778889877777421 33333 2222222222111
Q ss_pred cCC------CCC--CCcccceEEEEEecCCCcEEEEEeCCCe-------EEEEEccCCcccccccceeecccccCCCcce
Q 010801 258 MKP------SNM--DDLTEVITSAEFHPIYCNLLAYSSSRGF-------VRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 258 ~~~------~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~-------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
... ..+ ..|...|+.+++.++| ..++..-..|. |-+++.... . ..+.. +...
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~ 211 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQ 211 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHH
Confidence 111 124 4477789999999998 55544433332 223322211 1 11111 0001
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.....+.+-+|++++++.++++.+ .+.+.+||..+ ++.+....-.+. ..++-.+++ +++
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~ 272 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLV 272 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEE
Confidence 122346899999999999888765 39999999986 777666554433 467776666 666
Q ss_pred EEeCCCe
Q 010801 401 TGSYSNL 407 (501)
Q Consensus 401 s~~~dg~ 407 (501)
+.+. |.
T Consensus 273 ssG~-G~ 278 (305)
T PF07433_consen 273 SSGQ-GQ 278 (305)
T ss_pred eCCC-cc
Confidence 5554 44
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=2.4e-05 Score=74.64 Aligned_cols=275 Identities=14% Similarity=0.098 Sum_probs=142.1
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
.+..+++++.+|.|.-+|..+|+.. ++ ..+.+.- ...+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~-----------------------W~--~~~~~~~--------------~~~p~v- 103 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL-----------------------WR--VDLDERL--------------SGGVGA- 103 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe-----------------------ee--ecCCCCc--------------ccceEE-
Confidence 4668888899999999999999884 11 1111110 112233
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
++..++.++.++.+..+|..+|+.............. .....+ .++. + ..++.+..+|..
T Consensus 104 ---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---p~v~~~-----------~v~v-~--~~~g~l~a~d~~ 163 (377)
T TIGR03300 104 ---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---PLVANG-----------LVVV-R--TNDGRLTALDAA 163 (377)
T ss_pred ---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---CEEECC-----------EEEE-E--CCCCeEEEEEcC
Confidence 2456777778888888888887766554433322100 000000 1111 1 124556666655
Q ss_pred CceeeeeeEeecCCcccce-----EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc--cc---e-
Q 010801 203 NSVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I- 270 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---v- 270 (501)
.... +..+ ......+ .+.... + ..++.+ .++.+..+|.+++...... ... ...+.. .. +
T Consensus 164 tG~~---~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~-~~~--~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 164 TGER---LWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ-RVA--LPKGRTELERLVDVD 234 (377)
T ss_pred CCce---eeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee-ccc--cCCCCCchhhhhccC
Confidence 4221 1111 0000000 011111 2 356667 8899999998855433321 000 000000 00 0
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
....+ .+ ..+++++.+|.+..+|..+++.. +.. .. ....... .++..++.+ .+|.
T Consensus 235 ~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~~------------~~~~~p~--~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 235 GDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL------WKR-DA------------SSYQGPA--VDDNRLYVTDADGV 290 (377)
T ss_pred CccEE--EC-CEEEEEEcCCEEEEEECCCCcEE------Eee-cc------------CCccCce--EeCCEEEEECCCCe
Confidence 11112 23 56777888999999999988643 322 00 0111222 234455554 4699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
++.+|..+ ++.+........... ..... .+..|++++.+|.|+++|..+++.+ ..++.+..
T Consensus 291 l~~~d~~t-G~~~W~~~~~~~~~~--------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~ 351 (377)
T TIGR03300 291 VVALDRRS-GSELWKNDELKYRQL--------------TAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGS 351 (377)
T ss_pred EEEEECCC-CcEEEccccccCCcc--------------ccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCC
Confidence 99999975 665544321111100 11222 3568889999999999999988444 56665543
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.8e-05 Score=77.48 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=85.3
Q ss_pred CcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
....++.+++.+.+-+.+|+| .+|.|..+.-+..+ +..+. .-......+|+.+.+..++ ..++.+..-..|.
T Consensus 123 ~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~ 196 (933)
T KOG2114|consen 123 TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVM 196 (933)
T ss_pred CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeE
Confidence 346778899999999999999 99999998533111 11111 0123346789999999998 6534444456799
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEee-ccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHE 369 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~ 369 (501)
+|.+...... .++.+. |..++.+.++++....++++...-+.+|+... .++-..+. ++.
T Consensus 197 ~y~l~gr~p~---~~~ld~-------------~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 197 LYSLSGRTPS---LKVLDN-------------NGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred EEEecCCCcc---eeeecc-------------CCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCe
Confidence 9998854311 122333 46788888888766546666668899999863 44444444 443
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.3e-06 Score=78.63 Aligned_cols=290 Identities=17% Similarity=0.141 Sum_probs=166.6
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
|.++..|.+.|+.+.- .-.+++.+++.||.++.|.-..-......
T Consensus 2 yeksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV-------------------------------- 46 (558)
T KOG0882|consen 2 YEKSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV-------------------------------- 46 (558)
T ss_pred cchhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh--------------------------------
Confidence 3345555577888765 35679999999999999976542222111
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+.+ ..|-..|.+++.+.++.++.+. . |..++++|++.-. ....+ .+
T Consensus 47 -------------------------KhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D-minmi-----KL 94 (558)
T KOG0882|consen 47 -------------------------KHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD-MINMI-----KL 94 (558)
T ss_pred -------------------------hhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc-hhhhc-----cc
Confidence 111 5788889999999999988886 5 9999999998433 22211 12
Q ss_pred CCcccceEEEEEecCCC-cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 264 DDLTEVITSAEFHPIYC-NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~-~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
....+.+..+ .+|... ..+++. -.+|.+.++|-+...... ..+. .-|..+|..+.++|-+..
T Consensus 95 ~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 95 VDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred ccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence 2222222221 222210 133333 347899999977653221 1222 236789999999999998
Q ss_pred EEEEcC-CcEEEEEeeCC-----CCceeEeeccccccccccccCC-CCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 342 LLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYN-NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+++... |.|.-|..... .+....++.... +|. ..+-....++.|+|+|..+.+-+.|..|+++.+.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd-------Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD-------LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccch-------hhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 888764 99999987610 111111211111 111 0111112689999999999999999999999999
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccC-CCeEEEEEccCCCEEEEeeC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLS-SKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~ 493 (501)
+++.. +.+......-....-++ ..+ ..+..|- + +- ...++..+. ..-+.+.|...|++|..++-
T Consensus 232 tGklv-qeiDE~~t~~~~q~ks~---y~l---~~VelgR-R---ma----verelek~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 232 TGKLV-QEIDEVLTDAQYQPKSP---YGL---MHVELGR-R---MA----VERELEKHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred cchhh-hhhhccchhhhhccccc---ccc---ceeehhh-h---hh----HHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence 98443 33322211111111111 000 0000000 0 00 001111222 23356779999999999997
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
=|+.|.+
T Consensus 297 ~gikvin 303 (558)
T KOG0882|consen 297 LGIKVIN 303 (558)
T ss_pred eeEEEEE
Confidence 7777765
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=6.4e-08 Score=58.06 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=30.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.|.+.|++|+|+|++++||+|+.|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6899999999999999999999999999997
No 306
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=6.6e-05 Score=70.60 Aligned_cols=318 Identities=11% Similarity=0.093 Sum_probs=152.0
Q ss_pred ccCCCEEEEEe---------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 41 DKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 41 s~~g~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
|||+++++... ..+.+.|+|+++++.. .+....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----------------------------~l~~~~---------- 42 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----------------------------PLTPPP---------- 42 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----------------------------ESS-EE----------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----------------------------ECcCCc----------
Confidence 68898888743 3467889998887531 111112
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+....|+ |+|+.++... ++.|.+++..++....+....... +..|
T Consensus 43 --~~~~~~~~s--P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~-------------------------i~nG--- 89 (353)
T PF00930_consen 43 --PKLQDAKWS--PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPG-------------------------IYNG--- 89 (353)
T ss_dssp --TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTT-------------------------EEES---
T ss_pred --cccccceee--cCCCeeEEEe-cCceEEEECCCCCeEEecccccee-------------------------EEcC---
Confidence 568889998 7899988886 578999998877554443211000 0000
Q ss_pred cCcceEEEeccCceeeeeeEeecCCc-ccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT- 267 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 267 (501)
.+-..+ ... -+.-..+-||||++.|+.. ++..|+.+.+..-. ..+.
T Consensus 90 ----------------~~dwvy-eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~-------------~~~~~ 139 (353)
T PF00930_consen 90 ----------------VPDWVY-EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS-------------PPDSQ 139 (353)
T ss_dssp ----------------B--HHH-HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES-------------SSTES
T ss_pred ----------------ccceec-cccccccccceEECCCCCEEEEEEECCcCCceEEeeccC-------------Ccccc
Confidence 000000 000 1122458899999999986 66666665543110 0000
Q ss_pred -cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EE
Q 010801 268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SR 345 (501)
Q Consensus 268 -~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~ 345 (501)
..+..+.+-.-| .--.. -.+.++|+.+++.. .+.. ... +..-...+..+.|.++++.|+ .-
T Consensus 140 yp~~~~~~YPk~G-~~np~----v~l~v~~~~~~~~~-----~~~~-~~~------~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 140 YPEVESIRYPKAG-DPNPR----VSLFVVDLASGKTT-----ELDP-PNS------LNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp S-EEEEEE--BTT-S---E----EEEEEEESSSTCCC-----EE----HH------HHTSSEEEEEEEEEETTEEEEEEE
T ss_pred CCcccccccCCCC-CcCCc----eEEEEEECCCCcEE-----Eeee-ccc------cCCCccCcccceecCCCcEEEEEE
Confidence 123444443333 11111 14667888776532 1111 000 000135789999999999444 32
Q ss_pred --cC---CcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEc-CCC-cEEEEEeCCCeEEEEecCCCC
Q 010801 346 --DY---MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDG-LHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 346 --~~---~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~-~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.+ ..+.++|..+ +....... .....+... ....|. +++ .+|.....||--+||-++...
T Consensus 203 ~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred cccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 22 3556667765 33322222 222222110 245554 554 455555577765555544333
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC---cccccccCCCe-EEEEEccCCCEEEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKL-LHLAWHPTTNLIACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~---~~~~~~~~~~i-~~~~~sp~~~~la~~~ 492 (501)
.....+....-.|..+.........+ ...+....... .+|..+.. ....+-..... ..++|||++++++..+
T Consensus 270 ~~~~~lT~G~~~V~~i~~~d~~~~~i---yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 270 GKPRQLTSGDWEVTSILGWDEDNNRI---YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SEEEESS-SSS-EEEEEEEECTSSEE---EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cceeccccCceeecccceEcCCCCEE---EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 33344544444554433322212222 12333333344 77733222 22222222222 5899999999988655
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=3.5e-07 Score=54.79 Aligned_cols=38 Identities=29% Similarity=0.790 Sum_probs=34.8
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEe
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~ 143 (501)
+++.++++|. +.|++|+|+ |++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~~--~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAWS--PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence 4568899999 999999998 7899999999999999997
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.54 E-value=0.00011 Score=65.06 Aligned_cols=157 Identities=15% Similarity=0.032 Sum_probs=81.5
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
+..++.+ .++.+..+|..++....+..... .+... ..........+ ..++++..++.|..+|+++++...
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w---- 146 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW---- 146 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE----
T ss_pred ccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEE----
Confidence 3345554 77899999988565544421111 01111 11222222235 778888889999999999997542
Q ss_pred eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCc-EEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
.... ...+... .+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....
T Consensus 147 ~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~--------------- 204 (238)
T PF13360_consen 147 KYPV-GEPRGSS-PIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGI--------------- 204 (238)
T ss_dssp EEES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-E---------------
T ss_pred Eeec-CCCCCCc-cee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCc---------------
Confidence 1111 0000000 000 001122222223454444444564 555 8876 55332222 1111
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
......++..|+.++.++.|..||+.+++.
T Consensus 205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 122456777888888999999999999843
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=1.2e-07 Score=92.28 Aligned_cols=216 Identities=14% Similarity=0.236 Sum_probs=141.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+...+|++|+-+.+.|+.|+..|.|++|++.+|... ....+|.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence 46788999999999999999999999999999988753 5577888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|+.|.=+ .+|..+++.+. .--..+|+..+--
T Consensus 1144 ----SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~~--------------------------------------- 1178 (1516)
T KOG1832|consen 1144 ----SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASSTG--------------------------------------- 1178 (1516)
T ss_pred ----ccccccccc--CCcceeeeeccccCchHHHhcccccc---------------------------------------
Confidence 889988865 67777776542 2356788875411
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....| ..-.++.|+...+.-+.| ......+||+.+...+...+. ...+.
T Consensus 1179 --------------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~ 1229 (1516)
T KOG1832|consen 1179 --------------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTS 1229 (1516)
T ss_pred --------------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhh
Confidence 011111 122356776654444555 556789999996554443210 01112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
+..-....|+|+. .+++ .|| .+||.+..+.+ +.|+.. + .-..-.|+|.|..++..+
T Consensus 1230 ~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f-------------t-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF-------------T-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred hhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh-------------e-ecccccccCCCceEEeec
Confidence 2223678899997 6665 355 58999986443 444431 1 122335899998888765
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.|||+++ .+.++....... ..+.|...|..+.
T Consensus 1286 ----EIwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1286 ----EIWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMY 1317 (1516)
T ss_pred ----hhhhhHH-HHHHhcCccccc-----------------eEEEeccCccchh
Confidence 4899997 666665554443 4678877776554
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=8.4e-06 Score=79.06 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=127.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+...+.++|++++ ++++|-|+.+|.|++++..... .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc-------
Confidence 3347889999987 7899999999999999976441 1222333
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.. +.+|.++++||.||+|.|-.+.+.+.....
T Consensus 78 -----~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----------------------------------- 109 (846)
T KOG2066|consen 78 -----SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----------------------------------- 109 (846)
T ss_pred -----cc--------ccCCceEEEecCCCcEEEeeccCCccceeE-----------------------------------
Confidence 11 368999999999999999888776543322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-----CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
....++.+++++|+ .+.+++| .-| +.++..+--+....+ .
T Consensus 110 ---------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~ 155 (846)
T KOG2066|consen 110 ---------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------V 155 (846)
T ss_pred ---------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------e
Confidence 23457888999987 5678887 666 877754422221111 1
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+..-.++|.++.|. | +++|-++.+| |++||+..++... ..+. ..+..+ ...--..+.|.++. .|
T Consensus 156 l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~----~i~~--p~~~~R-----~e~fpphl~W~~~~-~L 219 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLT----NIPP--PSQSVR-----PELFPPHLHWQDED-RL 219 (846)
T ss_pred eecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceee----ccCC--CCCCCC-----cccCCCceEecCCC-eE
Confidence 44567899999998 4 7899888777 8999998875432 1111 001111 12234567777655 55
Q ss_pred EEEcCCcEEEEEee
Q 010801 343 LSRDYMNLKLWDIR 356 (501)
Q Consensus 343 ~~~~~~~i~lwd~~ 356 (501)
+.|-..+|+|..++
T Consensus 220 VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIGWGDSVKICSIK 233 (846)
T ss_pred EEecCCeEEEEEEe
Confidence 56655688888887
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.5e-05 Score=77.74 Aligned_cols=110 Identities=15% Similarity=0.313 Sum_probs=80.4
Q ss_pred eEEEEEccCCCEEEEEe----cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 35 VSAIEFDKTGDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 35 v~~v~~s~~g~~latg~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-+-.+|+|...++|+++ ..|.|.||- ++|+.. . -.+..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq-----------------------r--~Vt~P------------ 59 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ-----------------------R--DVTYP------------ 59 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC-----------------------c--ccccc------------
Confidence 34467999999999886 568899885 344321 0 01111
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
-.+++++|+ |..-.|+.|-.-|.+.+|...+.+.....
T Consensus 60 ---~hatSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv~------------------------------------- 97 (1416)
T KOG3617|consen 60 ---VHATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTVV------------------------------------- 97 (1416)
T ss_pred ---eehhhhccC--hHHHHHhhccccceeEEEecCCceeeeec-------------------------------------
Confidence 225679998 55556667777899999998776543322
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|..+|..+.|+++|..++++ .-|.|.+|....
T Consensus 98 ------------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ------------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ------------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 5789999999999999999999 899999998773
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.5e-06 Score=75.74 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=95.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+.|.++.|...++++..|+++|.|.+.|+..+..- . .+ . ...--|.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------~---------~~-~-a~rlyh~--------- 298 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------N---------GW-C-AQRLYHD--------- 298 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------C---------Cc-c-eEEEEcC---------
Confidence 4677889999999999999999999999999865221 0 00 0 1111244
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|+++... ..++++|++.+.+|+|++||.+--++..
T Consensus 299 ---Ssvtslq~L-q~s~q~LmaS~M~gkikLyD~R~~K~~~--------------------------------------- 335 (425)
T KOG2695|consen 299 ---SSVTSLQIL-QFSQQKLMASDMTGKIKLYDLRATKCKK--------------------------------------- 335 (425)
T ss_pred ---cchhhhhhh-ccccceEeeccCcCceeEeeehhhhccc---------------------------------------
Confidence 779988776 2367899999999999999988655422
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEE--ecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+..| .+|.+.-.-+- ..+....++++ +|...+||.++ .+..+..+..+ ....+
T Consensus 336 ------------------~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~tipf~---~s~~e 392 (425)
T KOG2695|consen 336 ------------------SVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTIPFP---YSASE 392 (425)
T ss_pred ------------------ceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeeccCCC---Ccccc
Confidence 12223 45544333332 24555566666 99999999999 55555543111 22233
Q ss_pred cceEEEEEe
Q 010801 268 EVITSAEFH 276 (501)
Q Consensus 268 ~~v~~v~~~ 276 (501)
..+.+++|.
T Consensus 393 ~d~~sv~~~ 401 (425)
T KOG2695|consen 393 VDIPSVAFD 401 (425)
T ss_pred ccccceehh
Confidence 345556554
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00012 Score=64.87 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=71.3
Q ss_pred CcccceEEEEecCCCCEEEEE-cCC-------eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE-EEE
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDL-------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS 286 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~ 286 (501)
-|...|.-+++.++|..++.. ..+ -|-+++.. ..+..+.............+-+|++++++ ..+ +++
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence 467789999999999777765 433 24444433 22332222222223455778999999998 655 555
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
-.-+.+.+||..+++.. ..... ..+..++..+++ ++++...|.+...+
T Consensus 236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 56789999999998654 22222 346777777666 66665556544433
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=9e-05 Score=71.19 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=85.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|.-=+++..+++++.|+.-|.+++|+..+++.. .....+-.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~--------- 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT--------- 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence 5566666777788999999999999999998887652 01111111
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.+..+..+ ++..++|.|+..|.|.++.++.+......
T Consensus 77 ---~~~~~~~vs--~~e~lvAagt~~g~V~v~ql~~~~p~~~~------------------------------------- 114 (726)
T KOG3621|consen 77 ---GITCVRSVS--SVEYLVAAGTASGRVSVFQLNKELPRDLD------------------------------------- 114 (726)
T ss_pred ---ceEEEEEec--chhHhhhhhcCCceEEeehhhccCCCcce-------------------------------------
Confidence 334444554 66777888888999999988764311110
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
.+-. .-..|...|++++|++++..+.+| ..|.|.+-.++.
T Consensus 115 ------~~t~------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 ------YVTP------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ------eecc------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 0000 004588999999999999999999 889988877764
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=4.1e-05 Score=74.47 Aligned_cols=144 Identities=12% Similarity=-0.001 Sum_probs=97.7
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
.+.|++++ ++.|+-| .+|.|++++.. +.. .. ...|... .-+| .++++|+.||.|.|-.+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC-Ccc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 44555554 5688889 99999999987 322 11 2223332 5567 999999999999999888
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeC-----CCEEEEEcC-CcEEEEEeeCCCCceeE-eeccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHL 371 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-----~~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~ 371 (501)
+.+.. ..++- ..++.+++++|+ .+.+++|+. | +.++.-+.-+..... +....+.
T Consensus 102 ~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 102 TDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred CCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 77544 33333 468999999998 456777776 6 888875432222222 2223333
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+ .++.|. |.++|-++++| |++||+.+++.+
T Consensus 163 I---------------~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 163 I---------------HSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred e---------------EEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 3 689994 67888888776 799999987554
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00044 Score=70.79 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=131.9
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.|.++.|--+++-++.+..+|.|.+-|.++... ..-|..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v----------- 108 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV----------- 108 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence 5899999999999999999999999998876643 122221
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.+|.+++|+ ||++.++..+.++++.+-.. +...+..... ..+ ....+.....-++...+-+- | +
T Consensus 109 d~GI~aaswS--~Dee~l~liT~~~tll~mT~-~f~~i~E~~L--~~d------~~~~sk~v~VGwGrkeTqfr-g---s 173 (1265)
T KOG1920|consen 109 DNGISAASWS--PDEELLALITGRQTLLFMTK-DFEPIAEKPL--DAD------DERKSKFVNVGWGRKETQFR-G---S 173 (1265)
T ss_pred cCceEEEeec--CCCcEEEEEeCCcEEEEEec-cccchhcccc--ccc------cccccccceecccccceeee-c---c
Confidence 2789999998 88999999998888766432 1111111100 000 00001111111111000000 0 0
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-----cC-CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.|..+..+..... ..... ..-.+.=++++|..||+++++. .+ ..|++||.+ +. +... -...
T Consensus 174 ~gr~~~~~~~~~e--k~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~------se~~ 240 (1265)
T KOG1920|consen 174 EGRQAARQKIEKE--KALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNST------SEPV 240 (1265)
T ss_pred hhhhccccccccc--ccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcc------cCcc
Confidence 0000000000000 00000 0011223468999999999882 34 799999988 22 1111 1112
Q ss_pred ccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+.=.+++|-|.| .++++-.. |+.|.+|.-..-+.. .|.. + ++.....+..++|+.++..||
T Consensus 241 ~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg-----~f~l-~--------~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 241 EGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG-----EFVL-P--------FPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred cccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc-----cccc-C--------CcccccchheeeecCCCCcee
Confidence 2333689999998 88877543 567888874432111 1111 0 011123499999999999999
Q ss_pred EE---cC-CcEEEEEeeC
Q 010801 344 SR---DY-MNLKLWDIRM 357 (501)
Q Consensus 344 ~~---~~-~~i~lwd~~~ 357 (501)
.. .. ..|++|-+.+
T Consensus 306 v~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeecccccceEEEEEecC
Confidence 73 23 4599998753
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.3e-05 Score=66.21 Aligned_cols=78 Identities=8% Similarity=0.244 Sum_probs=61.2
Q ss_pred ccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|..++|||..+ ++..++.+..|+|.|+++.... ..+..|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------ssy~a~-------- 235 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------SSYIAY-------- 235 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceee---------------------------eheecc--------
Confidence 4678899999999776 7788999999999999976432 344444
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~ 148 (501)
..+++++|.. .+..++..|-..|.|.+||++..+
T Consensus 236 -----~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 -----NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred -----CCceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence 5699999983 345677777799999999998643
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.26 E-value=3.1e-07 Score=86.31 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=134.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.|+++....+...++.|..+|.|-+-.+....-.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------- 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------- 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------------------------
Confidence 5577888774444456777888899988776653311
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-c----CCeEEEEECCCCCe-eeeeeecCCCCCCC-
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISDQ-CFNIVDMKPSNMDD- 265 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~- 265 (501)
-..+..++....++++|++ |.+.||+| + |..+.|||+.+.-. +.... .+.+
T Consensus 94 ----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-----~fs~~ 152 (783)
T KOG1008|consen 94 ----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-----LFSSS 152 (783)
T ss_pred ----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc-----ccccc
Confidence 0011267788899999987 56778887 3 67899999984311 11111 1222
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~ 344 (501)
......+++|-.+. +++++|...+.++++|+|...... ..+. +..+..+...| .+.|+++
T Consensus 153 ~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCccccccccCc-chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceec
Confidence 33445688999877 889999999999999999643221 1111 23577788888 7889998
Q ss_pred EcCCcEEEEE-eeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEe-CCCeEEEEecCC
Q 010801 345 RDYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~~~~i~lwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~-~dg~i~iwd~~~ 415 (501)
-.++.|.+|| .+.-..++..+.......+. .+..++|.|.. ..+++.+ ..++|+++++..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8899999999 43323444444333332111 11689999953 2444444 458899999854
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00018 Score=64.49 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=57.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+|. +..++..++.+..|+|.|+++.......
T Consensus 194 ~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vssy---------------------------------------- 232 (463)
T KOG1645|consen 194 SFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSSY---------------------------------------- 232 (463)
T ss_pred hhhhhhccCcc-ccceeeeeccCceEEEEecccceeeehe----------------------------------------
Confidence 77999999952 3347888999999999999986644322
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCe
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..+ ..+++++|.-+. .++.+| .+|.|.+||++....
T Consensus 233 ---------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 233 ---------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ---------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 333 688999997654 566778 899999999985443
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.25 E-value=0.00037 Score=71.29 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=128.0
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|.++.|..++..++.+ ..|.|.+-|..+... .+ ...-...|.+++|+||+ +.++..+..+++.+.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--ei-------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EI-------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce--ee-------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence 3689999999999999888 999999998774332 21 23356789999999999 9999999888887654
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----------CCcEEEEEeeCCCCceeEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----------YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----------~~~i~lwd~~~~~~~~~~~~ 366 (501)
-. -... .. .++ ...-.+.++++-+|- .|.....+.....+......
T Consensus 138 ~~-f~~i-------~E---------------~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 138 KD-FEPI-------AE---------------KPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cc-ccch-------hc---------------ccc-ccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 21 1111 00 011 111122233333321 11111111111111111111
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-----CCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
.+... +.++|--||+++|+.. ....|+|||.+ | .+..+-......-.++++.| .|
T Consensus 194 ~~~~~----------------~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkP--sg 253 (1265)
T KOG1920|consen 194 QDDHK----------------TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKP--SG 253 (1265)
T ss_pred hccCC----------------ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecC--CC
Confidence 22222 5799999999998732 23789999987 3 33333333344445677777 44
Q ss_pred ccCccceeeeec---ccce-eeccccCCccc-----ccccCCCeEEEEEccCCCEEEE---eeCCe-EEEEe
Q 010801 442 RRSSLSNLTRGL---YRQA-HENSSSGHHEL-----SYNLSSKLLHLAWHPTTNLIAC---ANGNS-LFFHY 500 (501)
Q Consensus 442 ~~~~~~~l~~~~---~~~~-~iw~~~~~~~~-----~~~~~~~i~~~~~sp~~~~la~---~~~~~-~~i~~ 500 (501)
.. +++-. .++. .++..++.... ......+|..++|+.++..||+ ...+. +++|+
T Consensus 254 s~-----iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 254 SL-----IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred Ce-----EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 44 34332 2222 44433322211 1122334899999999999998 44444 88886
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.23 E-value=0.00072 Score=63.73 Aligned_cols=276 Identities=14% Similarity=0.142 Sum_probs=131.2
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhh-------h--cccc--------ccCCCCceeeEee
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------K--QMDF--------TSTSHPEYRYKTE 96 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~--~~~~--------~~~~~~~~~~~~~ 96 (501)
.|+.+.|+++..-||+|...|.|.||.+...+..+. ...-..++ . .... ...-+..+.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 489999999988999999999999999887654310 00000000 0 0000 0000123444455
Q ss_pred eccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
++... ++|++++.+ |-.+++.|..+|.+.|.|+++...+.......
T Consensus 82 ~~~~~------------g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~------------------- 127 (395)
T PF08596_consen 82 LDAKQ------------GPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE------------------- 127 (395)
T ss_dssp E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------
T ss_pred eeccC------------CcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------
Confidence 55455 899999986 67799999999999999998877655421110
Q ss_pred CCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-----CCC---CEEEEE-cCCeEEEEECC
Q 010801 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----~~~---~~l~~~-~d~~i~iwd~~ 247 (501)
..........++++.|. .|+ -.+++| ..|.+.+|.+.
T Consensus 128 ----------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 128 ----------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp ------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ----------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 00002234456666664 222 356778 88999998765
Q ss_pred C-CCeee--eeeecCCCCCCCcccceEEEE-EecCCC-------------------cEEEEEeCCCeEEEEEccCCcccc
Q 010801 248 I-SDQCF--NIVDMKPSNMDDLTEVITSAE-FHPIYC-------------------NLLAYSSSRGFVRLVDMRQSALCD 304 (501)
Q Consensus 248 ~-~~~~~--~~~~~~~~~~~~~~~~v~~v~-~~p~~~-------------------~~l~~~~~dg~i~~wd~~~~~~~~ 304 (501)
. ....+ ..... ...+.+.|..+. ++.+.+ .-+++...+..++++...+.+...
T Consensus 174 p~~~g~f~v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~ 249 (395)
T PF08596_consen 174 PSSNGRFSVQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH 249 (395)
T ss_dssp E-GGG-EEEEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE
T ss_pred cCCCCceEEEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc
Confidence 2 11111 11110 123444555444 322210 124444557789999887765432
Q ss_pred cccceeecccccCCCcceeeecccceeEEEEe-----eCCCEEEEE-cCCcEEEEEeeCCCCceeEeecccccccccccc
Q 010801 305 HSARILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-----p~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (501)
+.++. ......+.+- ..+..|++- .+|.|++|.+.. -+.+..+......-...
T Consensus 250 ---K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~--- 308 (395)
T PF08596_consen 250 ---KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRR--- 308 (395)
T ss_dssp ---EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH---
T ss_pred ---eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCcccccc---
Confidence 22222 1123333442 234445543 569999999974 66666665432211000
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
....+++++|..++-.+.. .+.++.
T Consensus 309 --------~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 309 --------LSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp --------HTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred --------ccccEECCCCCEEEEeCcc-cEEEEE
Confidence 0357778888877655443 343443
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00045 Score=68.09 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=98.5
Q ss_pred CEEEE-E-cCC----eEEEEECCCC-----CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 231 ETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 231 ~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.+|++ | +++ .+++|+++.. .+++....+-+...+....++.+++++.+- +.+|+|-.+|.|..+.-.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcc
Confidence 45555 4 444 6999998743 233322222222234446788999999997 9999999999999884221
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEcCCcEEEEEeeCCCCc-eeEeeccccccccccc
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPKLCD 377 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~ 377 (501)
.+ ++..+.--.| .-..+|+++++..+++- +.+++-..|.+|.+.. ..+ ...+..+....
T Consensus 157 ~R--Drgsr~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~l----- 217 (933)
T KOG2114|consen 157 LR--DRGSRQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISL----- 217 (933)
T ss_pred hh--ccccceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccc-----
Confidence 11 0000111110 11468999999999886 3444457899999973 332 33354444432
Q ss_pred cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe-cccC
Q 010801 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN 428 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 428 (501)
.+.++++....+++++. ..+.+|+.+.. .....+. +|+.
T Consensus 218 ----------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 218 ----------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred ----------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeE
Confidence 56777765553444443 36899998743 3445555 4443
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.00028 Score=66.87 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
-.....|.+++++|+...++.| .||.|.+||...+-. . .....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-~---------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-L---------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-e---------eeeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 3567889999999999999999 999999999883321 1 11233457899999999 9999999999999
Q ss_pred EEEccCCc
Q 010801 294 LVDMRQSA 301 (501)
Q Consensus 294 ~wd~~~~~ 301 (501)
+||+.-+.
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99997654
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.00018 Score=68.05 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 327 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
...+.+++++|+.+.++.| .||.|.+||... + +..+.... .++ +.++|+|+|.++++|+..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence 5689999999999888877 579999999864 2 22222122 221 689999999999999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
|.+.+||+.-.
T Consensus 321 GelQ~FD~ALs 331 (545)
T PF11768_consen 321 GELQCFDMALS 331 (545)
T ss_pred ceEEEEEeecC
Confidence 99999999765
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=5.1e-05 Score=74.85 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=103.5
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.|.-++. +++.+.+|...|+|.+-|..+.+.+...
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~----------------------------------------- 213 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTF----------------------------------------- 213 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCceeeee-----------------------------------------
Confidence 3666663 6788888889999999998887655443
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c--------CCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--------DLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|.+.|.++.. .|+.|+++ + |..|++||++.-+.... +.
T Consensus 214 --------------------~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~ 263 (1118)
T KOG1275|consen 214 --------------------DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQ 263 (1118)
T ss_pred --------------------eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--------cc
Confidence 688888876654 56677763 3 55689999994443221 22
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
-+.++ .-+.|+|.-...+++++..|...+-|..+-....- .++.. ......+..+.++++|+.++.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v-----------~p~~s~i~~fDiSsn~~alaf 329 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMV-----------NPNGSGISAFDISSNGDALAF 329 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc--ceeEE-----------ccCCCcceeEEecCCCceEEE
Confidence 22222 56788998778899999999999998433211100 11111 011345999999999999999
Q ss_pred Ec-CCcEEEEEe
Q 010801 345 RD-YMNLKLWDI 355 (501)
Q Consensus 345 ~~-~~~i~lwd~ 355 (501)
|+ +|.|.+|.-
T Consensus 330 gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 330 GDHEGHVNLWAD 341 (1118)
T ss_pred ecccCcEeeecC
Confidence 96 499999973
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=2.3e-06 Score=80.68 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=127.2
Q ss_pred cccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....+.|++++-+. .++++|..+|.|.+-.+....- ...-...+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~a------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYA------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------ccceeccccc-------
Confidence 35678888887644 5789999999999887654321 0011223344
Q ss_pred ccccccceeEEEEeecCCCCEEEEee----CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s----~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...++++|++ -|...||+|- .|-.+.|||+.++-......
T Consensus 103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~------------------------------ 146 (783)
T KOG1008|consen 103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES------------------------------ 146 (783)
T ss_pred -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccc------------------------------
Confidence 6789999984 4666777762 56679999998763110000
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
|. +..+......+++|-.+.+++.+| ....+.++|++...... .
T Consensus 147 --------------~~------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~ 191 (783)
T KOG1008|consen 147 --------------PL------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------S 191 (783)
T ss_pred --------------cc------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------h
Confidence 00 001122334478888889999999 88899999998221111 1
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEE-ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-E
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~ 341 (501)
.-.+..+..+.+.|-.++++++-. ||.|.+|| .++-+.. ...... ...+. ...+..++|+|... .
T Consensus 192 svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~-~~N~~--------~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 192 SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILR-NENKK--------PKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH---HHHHhh-CCCCc--------ccceeeEEeccCCcch
Confidence 112345677888883337777644 99999999 4432211 111111 11110 12488999999543 3
Q ss_pred EEEE-cC-CcEEEEEeeC
Q 010801 342 LLSR-DY-MNLKLWDIRM 357 (501)
Q Consensus 342 l~~~-~~-~~i~lwd~~~ 357 (501)
+++. .| ++|+++|+..
T Consensus 259 la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccCcceEEEecccc
Confidence 3333 45 9999999864
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=7.3e-05 Score=73.79 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=95.6
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---------CCeEEEEEc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDM 297 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~~wd~ 297 (501)
.+++.+.+| ..|+|.+-|.++ -+.++ ++..|++.|.++... | ++|++++. |.-|++||+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s-~~~ih-------t~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS-FETIH-------TFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc-Cceee-------eeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhh
Confidence 467889999 999999999994 44444 378899998876654 6 78888876 455899999
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEE-cCCcEEEEEeeCCCCc-eeEeecccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DYMNLKLWDIRMDSTP-VATFKIHEHLRPK 374 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~-~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~ 374 (501)
|..+... -+.. ...-.-+.|+|. ...+++. ..|...+-|..+.+.+ ...+..+....
T Consensus 254 Rmmral~----PI~~--------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-- 313 (1118)
T KOG1275|consen 254 RMMRALS----PIQF--------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-- 313 (1118)
T ss_pred hhhhccC----Cccc--------------ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC--
Confidence 9865331 1111 011244566664 2334444 4599999885433333 33333332211
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.+..+++|++|..||.|..+|.|.+|.
T Consensus 314 -----------~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 -----------GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -----------cceeEEecCCCceEEEecccCcEeeec
Confidence 016899999999999999999999997
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.14 E-value=0.004 Score=59.75 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCC--CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
.++.+ .++.+.-+|.++++...+. ...... ......+ ... + ..++.++.+|.+..+|..+++...+.
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~-- 231 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTV-NLDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQ-- 231 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeee-cCCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhhhee--
Confidence 45555 7888998998855554432 110000 0011111 111 2 34666788999999999988654211
Q ss_pred eeecccccCCCcceeeecccceeEEEEee---CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
.. ........ + .....+..+| ++..++++.++.++.+|..+ ++.+-...... .
T Consensus 232 --~~-~~~~~~~~-~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~-~-------------- 287 (394)
T PRK11138 232 --RI-SQPTGATE-I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGS-V-------------- 287 (394)
T ss_pred --cc-ccCCCccc-h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCC-c--------------
Confidence 10 00000000 0 0000111112 44444444568999999986 66544332111 0
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..+.. ++..|+.++.+|.+..+|..+++.
T Consensus 288 --~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 288 --NDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --cCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 11222 455677788899999999988854
No 329
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0014 Score=57.23 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=64.6
Q ss_pred CcccceEEEEecCCCCEEEEE-cCCeEEEEECCC--CCeeeeeeecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
.+...+-.++|.+.++.|+.+ ...-..+|.++. ....+....... .........+.+++++|..+++++.......
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 455678999999998888888 666666776653 122221111100 0012233457899999987678888888899
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
|..+| .+++.. ..+......... ...-...-.|+|.++|++.+++.-+..++|
T Consensus 195 l~~~d-~~G~~~----~~~~L~~g~~gl----~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 195 LLELD-RQGRVV----SSLSLDRGFHGL----SKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE--TT--EE----EEEE-STTGGG-----SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEC-CCCCEE----EEEEeCCcccCc----ccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 99999 445432 222220000000 000124678999999988877754655554
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0094 Score=57.06 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.3
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecc
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
+++..|++||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999997655 9998988764 5556666544
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00028 Score=67.12 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred ccceEEEEecCCCCEEEEE--c--C-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe-
Q 010801 218 DFNINSISNNSDCETFVSA--D--D-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF- 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~- 291 (501)
...+..-+|+|+++.++.- . . ..+.+++++.+...... ++.++. ...+|+|||.+++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~---~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNN---GAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCcc---CCccCCCCCCEEEEEECCCCCc
Confidence 4456667899999887652 2 2 35999999955443321 233333 356899999555556666776
Q ss_pred -EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeecc
Q 010801 292 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.++|+..+... +.-.. .+.-..-.|+|||++|+-.+| |.-.||-...++.....+...
T Consensus 263 ~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 263 DIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred cEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 455577665422 21111 122336789999999997765 554454443335554555433
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCe--EEEEecCCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS 417 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~ 417 (501)
...- ..-.|+|||++|+..+. +|. |.+.|+.++.
T Consensus 325 ~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 325 GGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 3321 25789999999987764 344 6667776653
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.002 Score=62.84 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=56.4
Q ss_pred eEEEEcCCCcEEEEEe-CCCeEEEEecCCCCc-----------ceEEEecccCcccceeeccCCccccCccceeeeeccc
Q 010801 388 FECSVSGDGLHFATGS-YSNLLRIFSHGVGSA-----------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
..+.++|||+++++++ .+++|.|.|+.+.+. +..+.+.-.++ .-.+|.. +|.. ..+-.-|
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg--~G~a-----ytslf~d 395 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG--RGNA-----YTTLFLD 395 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC--CCCE-----EEeEeec
Confidence 6899999999887655 589999999987543 22333332222 2344433 3433 5666667
Q ss_pred ce-eeccccC-----------CcccccccCCCeEEEE------EccCCCEEEEee
Q 010801 456 QA-HENSSSG-----------HHELSYNLSSKLLHLA------WHPTTNLIACAN 492 (501)
Q Consensus 456 ~~-~iw~~~~-----------~~~~~~~~~~~i~~~~------~sp~~~~la~~~ 492 (501)
.. ..|+... .+....+-...+-++. -.|||++|++.+
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 77 7885543 1222122222222333 368899998876
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.0049 Score=58.20 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=119.8
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee--eeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.|+.+.|+ ++...|+++...|.|-||.....+.-. ..........+.+.. .
T Consensus 3 ~v~~vs~a--~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~-------------------------~ 55 (395)
T PF08596_consen 3 SVTHVSFA--PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSL-------------------------N 55 (395)
T ss_dssp -EEEEEEE--TTTTEEEEEETTS-EEEEEEEE------------------S--G-------------------------G
T ss_pred eEEEEEec--CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccc-------------------------c
Confidence 48889998 677889999999999999887654221 000000000000000 0
Q ss_pred CcceEEEeccCc------eeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-C
Q 010801 193 NMATKIANVGNS------VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-D 264 (501)
Q Consensus 193 ~~~i~~w~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 264 (501)
++.-.+.|+... .-..+...+ ....++|++++.+.- .+++.| .+|.+.|.|++ +...+..-.+..... .
T Consensus 56 ~~~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~ 132 (395)
T PF08596_consen 56 NSPGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSK 132 (395)
T ss_dssp GSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BT-SEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-S
T ss_pred CCCcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCC-cEEEEEecCCcEEEEECC-CCeEEeecccccccccc
Confidence 011122222221 111222222 556899999999744 499999 99999999998 554443333332111 2
Q ss_pred CcccceEEEEEec-----CC--CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE-Ee
Q 010801 265 DLTEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FA 336 (501)
Q Consensus 265 ~~~~~v~~v~~~p-----~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~s 336 (501)
.....|+++.|.. |+ .-.+++|+..|.+.+|.+.-............. . ..+..+|..+. ++
T Consensus 133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~---------~~~~~~i~~I~~i~ 202 (395)
T PF08596_consen 133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-T---------TNHDSPILSIIPIN 202 (395)
T ss_dssp S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-E-----------SS----EEEEEE
T ss_pred ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-c---------ccCCCceEEEEEEE
Confidence 2345688888862 11 136888999999999987521111000011111 0 11223333333 21
Q ss_pred eC---------------------CCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc--
Q 010801 337 ND---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-- 393 (501)
Q Consensus 337 p~---------------------~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 393 (501)
.+ ..+++++++..++++...+ .+............ ..+++-
T Consensus 203 ~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~ 266 (395)
T PF08596_consen 203 ADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPT 266 (395)
T ss_dssp TTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEE
T ss_pred CCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEee
Confidence 11 1256666778999998865 44433332111110 234442
Q ss_pred ---CCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 394 ---GDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 394 ---~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+..|++-..+|.|+++.+..-+.+
T Consensus 267 ~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 267 ISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp E-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred cccCCceEEEEEECCCcEEEEECCCchHh
Confidence 35677889999999999999877444
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.011 Score=54.51 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=38.8
Q ss_pred cccceEEEEEccCCCEEEEEe-cCCc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGD-RGGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~-~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
|.-.-+.=+|.+||+.|+.++ .||. +.+.|+.+++. .+|..+..
T Consensus 34 h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i----------------------------~QLTdg~g----- 80 (386)
T PF14583_consen 34 HRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI----------------------------TQLTDGPG----- 80 (386)
T ss_dssp E---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE----------------------------EE---SS------
T ss_pred cceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE----------------------------EECccCCC-----
Confidence 333444456788997766554 4554 55557776643 33443321
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
.......++ ++++.++-....+.|+-.|+++.+...+.
T Consensus 81 ------~~~~g~~~s--~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 81 ------DNTFGGFLS--PDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp ------B-TTT-EE---TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred ------CCccceEEe--cCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 112234454 56677666656678888888887755544
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.01 E-value=0.011 Score=53.46 Aligned_cols=260 Identities=12% Similarity=0.057 Sum_probs=138.8
Q ss_pred EEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 118 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+..+ |+++.+++++ ..-.|.+||..+-...........+... .-........+.+.++++.
T Consensus 40 ~~~~s--pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~------~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 40 NVALS--PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ------VVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEEE
T ss_pred ceeEC--CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe------ecccccceEEccCCcEEEE
Confidence 34555 7888888743 3346999999988766655443221100 0112223345667777777
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
-.+++...+.+.|++.......+.. ..+..+--+++..+...|.||.+.-..+...++..... .+ -+..-.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~--~F~~~~ 182 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS-TK--VFDPDD 182 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEEG------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE-EE--ESSTTT
T ss_pred EccCCCCeEEEEECCCCceeeeecC------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee-cc--ccCCCC
Confidence 7788888899999887543222211 11111111222333333578888877777555443211 01 122222
Q ss_pred cce-EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecc--cccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 268 EVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--AESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 268 ~~v-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.++ ..-++...+ ..++..+.+|.|+--|+....... ...+... .+..... -.+.-.-+++++....|..
T Consensus 183 dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~~~W-----rPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 183 DPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKADGW-----RPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp S-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHHTTE-----EE-SSS-EEEETTTTEEEE
T ss_pred cccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccccCc-----CCcceeeeeeccccCeEEE
Confidence 222 233455555 567768999999999987764221 1112110 0000000 0244566788876555443
Q ss_pred ----Ec-----C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE-eCCCeEEEE
Q 010801 345 ----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIF 411 (501)
Q Consensus 345 ----~~-----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~iw 411 (501)
+. + ..|-++|+.+ ++.+.++...... .+++.+.+.+ +|++. ..++.+.+|
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 21 2 3577778876 7888888753322 4788888765 56554 457999999
Q ss_pred ecCCCCcc
Q 010801 412 SHGVGSAG 419 (501)
Q Consensus 412 d~~~~~~~ 419 (501)
|..+++.+
T Consensus 318 D~~tGk~~ 325 (342)
T PF06433_consen 318 DAATGKLV 325 (342)
T ss_dssp ETTT--EE
T ss_pred eCcCCcEE
Confidence 99999543
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.00 E-value=0.0035 Score=54.76 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=90.5
Q ss_pred CCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+-...+..++|+|+.+.|++ . ..+.|...+.+ ++.++.+. +.+. ...-.|++..++ .++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g~-~D~EgI~y~g~~-~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDGF-GDYEGITYLGNG-RYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCCC-CCceeEEEECCC-EEEEEEcCCCcE
Confidence 455667999999998665555 5 77788777765 45555542 3332 345788888776 666665568999
Q ss_pred EEEEccCCccccc--ccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeC--CCCceeEe--
Q 010801 293 RLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATF-- 365 (501)
Q Consensus 293 ~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~--~~~~~~~~-- 365 (501)
.++++........ ..+.+.. .....+...+-.++|.|.++.|+.+. ..-..+|.++. ....+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 9998854321110 0111111 00012346789999999877666654 35566777653 11111111
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 414 (501)
...... .-...+..+++++|. +.+++-...+..|..+|.+
T Consensus 161 ~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 161 QDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 111100 011223368999996 5667777778888888843
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.99 E-value=0.0039 Score=59.83 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=58.9
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 360 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~ 360 (501)
..++.++.+|.+..+|..+++.. +.. .. .....+.. .++..++...++.+..+|..+ ++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~t-G~ 315 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRG-GV 315 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE-ECCEEEEEcCCCeEEEEECCC-Cc
Confidence 45667778999999999998643 322 00 01111222 233333444569999999875 65
Q ss_pred ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
.+-.......... .+... .+..|+.++.||.|++.|..+|+.+
T Consensus 316 ~~W~~~~~~~~~~--------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 316 ELWSQSDLLHRLL--------------TAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEcccccCCCcc--------------cCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 4433221111100 11222 2456788899999999999998543
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0012 Score=63.82 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=86.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.--++. ..+++++.|+.-|.+++|+-..++......
T Consensus 34 ~~v~lTc~d--st~~~l~~GsS~G~lyl~~R~~~~~~~~~~--------------------------------------- 72 (726)
T KOG3621|consen 34 ARVKLTCVD--ATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--------------------------------------- 72 (726)
T ss_pred ceEEEEEee--cCCceEEEecccceEEEEecCchhhhcccc---------------------------------------
Confidence 344444554 678999999999999999988876443220
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+-...+..+..+++..++|+| ..|.|.++-++. ...-...-..+ .-..|...|++
T Consensus 73 ---------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~-~d~~~~~rVTa 129 (726)
T KOG3621|consen 73 ---------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTP-CDKSHKCRVTA 129 (726)
T ss_pred ---------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecc-ccccCCceEEE
Confidence 1223345566678888888888 999999998884 32221111111 11337889999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
++|++++ ..+++|...|.|.+-.+..
T Consensus 130 l~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 130 LEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEecccc-cEEeecCCCceEEEEEech
Confidence 9999999 9999999999999988876
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00069 Score=64.51 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=111.8
Q ss_pred ccceEEEEEccCCCEEEEEe---cC-CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...+..-+|+|+++.++.-. .. ..+.++++.+++.. .+..+.++.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------------------~i~~~~g~~------ 240 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------------------VILNFNGNN------ 240 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------------------eeeccCCcc------
Confidence 45677788999998776543 22 35888898887542 334455554
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEE--EEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIK--LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~--lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...+|+ |||+.|+.+. .|+... +.|+.++....+.
T Consensus 241 ---------~~P~fs--pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt------------------------------- 278 (425)
T COG0823 241 ---------GAPAFS--PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT------------------------------- 278 (425)
T ss_pred ---------CCccCC--CCCCEEEEEECCCCCccEEEEcCCCCcceecc-------------------------------
Confidence 445787 7888887764 666554 4466655522211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEE--ECCCCCeeeeeeecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~ 260 (501)
.-.+.-..=.|+|||+.++-. ..|.-.|| +.+ +....++
T Consensus 279 -------------------------------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~~ri----- 321 (425)
T COG0823 279 -------------------------------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQVTRL----- 321 (425)
T ss_pred -------------------------------cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCceeEe-----
Confidence 111111145689999999875 55654544 555 3322221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC-CCe--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+...... ....|+|+| ++|+..+. +|. |.+.|+.++.. .+.+.. ........+.|
T Consensus 322 -T~~~~~~--~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~--------------~~~~e~ps~~~ 379 (425)
T COG0823 322 -TFSGGGN--SNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK----IRILTS--------------TYLNESPSWAP 379 (425)
T ss_pred -eccCCCC--cCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc----EEEccc--------------cccCCCCCcCC
Confidence 1222212 266899999 77776664 344 55666655432 133333 23445667888
Q ss_pred CCCEEEEEcC--CcEEEEEeeCCCCce
Q 010801 338 DGQHLLSRDY--MNLKLWDIRMDSTPV 362 (501)
Q Consensus 338 ~~~~l~~~~~--~~i~lwd~~~~~~~~ 362 (501)
+|+.+...+. +.=.++.+...++..
T Consensus 380 ng~~i~~~s~~~~~~~l~~~s~~g~~~ 406 (425)
T COG0823 380 NGRMIMFSSGQGGGSVLSLVSLDGRVS 406 (425)
T ss_pred CCceEEEeccCCCCceEEEeeccceeE
Confidence 8888775432 333444443323333
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.013 Score=56.31 Aligned_cols=145 Identities=9% Similarity=0.042 Sum_probs=71.1
Q ss_pred CCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
|.+|....++.|.+||+. .++.++.++ -.+|..+.|++++ ++++..+.+ .+.+++........
T Consensus 117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~----- 179 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAA----- 179 (443)
T ss_dssp SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH-----
T ss_pred CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhccc-----
Confidence 777777766699999999 455555431 1248999999998 888888765 56776644320000
Q ss_pred eecccccCC--CcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 310 LRDAAESHG--SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 310 ~~~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
. .+... ....+......|.+.+|..| .++-.+.++|+- +. +.....+..-+.+.
T Consensus 180 --~-~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~--~Ge~~~i~~ld~~~--------------- 235 (443)
T PF04053_consen 180 --I-PEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LV--NGETGIIAHLDKPL--------------- 235 (443)
T ss_dssp --B-TTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EE--TTEEEEEEE-SS-----------------
T ss_pred --c-cccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EE--cCCcceEEEcCCce---------------
Confidence 0 00000 00001111357888889865 444333346665 33 22233333323322
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.=+...++.+.+.....|+.|..+.+..
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 4567777667888888888888887754
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.86 E-value=0.0015 Score=66.08 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=71.2
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
.-+.| .++.+..||.+..+..+. .... ..........|++-..+| .||+|+.+|.||+||- .+... ...
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v--~~~~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A---KT~- 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV--DSQS-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA---KTA- 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee--eccc-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---hhc-
Confidence 45567 999999999985542211 1010 112234556788888776 7999999999999993 22111 011
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++...+|..+..+.||++|++.++..|.|+++.
T Consensus 614 ------------lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 ------------LPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------------CCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2334579999999999999998888888888864
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.011 Score=57.75 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=54.0
Q ss_pred cceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc------------eeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 328 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
.....+.++|||++++++. +.++.|.|+.+ .+. +.+......+ ...+|+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEEC
Confidence 5678899999999998875 49999999975 221 2222222222 468999
Q ss_pred CCCcEEEEEeCCCeEEEEecCC
Q 010801 394 GDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++|....|-.-|..|..|+++.
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 9999888888999999999876
No 343
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.81 E-value=0.0084 Score=52.99 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc---ccceEEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD 304 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~ 304 (501)
+..++.+ .++.|..+|..++...... .........+ ...+..-....++ .++.++.++. +.+ |+.+++.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~-- 195 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEK-- 195 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEE--
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCE--
Confidence 6677777 7999999999955443332 2111010000 0111222222333 5666666775 555 9998863
Q ss_pred cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
.+.. . ...+... ...++..|+.++ ++.|..||+++ ++.+
T Consensus 196 ----~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 196 ----LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV 235 (238)
T ss_dssp ----EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred ----EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence 2322 0 0122221 345667777665 69999999986 6543
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0011 Score=65.30 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=80.7
Q ss_pred cCccccCCCCCCcccccceecc--CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
+.....++.|.-.+++.+.+++ +|.+.++--.. ++.+.. .-.-.+++++|+|..-.|+.| .-|.+.+|..+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC
Confidence 4444556677777777777643 45666654332 222211 112345679999998888999 99999999988
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
... . .++ ...|..+|..+.|+++| ..++++..-|.|.+|....
T Consensus 90 ~~e-~-htv------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 TTE-T-HTV------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred Cce-e-eee------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 333 2 221 46799999999999999 9999999999999998764
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.78 E-value=0.028 Score=50.86 Aligned_cols=242 Identities=13% Similarity=0.029 Sum_probs=123.5
Q ss_pred EEecCCCCEEEE----------E-cCCeEEEEECCCCCeeeeeeecCCC-CCCCcccceEEEEEecCCCcEEEEEeC--C
Q 010801 224 ISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS--R 289 (501)
Q Consensus 224 l~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~--d 289 (501)
+..+|+++.+++ | +...|.+||..+ -....-+.+.+. ... .......++++.++ +++++... -
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TPa 117 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTPA 117 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESSS
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCCC
Confidence 556889888775 3 355799999984 334443434432 121 11123445788888 77666533 5
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccc
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
-.|.+.|+..++.. ..+.. .....+-=+++..+...|.||.+.-..+...++...+...--
T Consensus 118 ~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 118 TSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp EEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred CeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 67899999887543 33333 122222223344566667789999999886677653322100
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc-eEEEeccc----------CcccceeeccC
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGK----------NENRKPILQAA 438 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~----------~~v~~~~~~~~ 438 (501)
. -.++.++ ..-+++..+..++--+.+|.|+--|+...... ...+..-. +.-..+++.+.
T Consensus 179 ~--------~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 179 D--------PDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp S--------TTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred C--------CCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 0 0112222 34455555555555889999999888765322 11121100 01112344332
Q ss_pred CccccCccceeeeec-----ccce-eecccc--CC-cccccccCCCeEEEEEccCCC-EEEEee--CCeEEEEeC
Q 010801 439 PRARRSSLSNLTRGL-----YRQA-HENSSS--GH-HELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA 501 (501)
Q Consensus 439 ~~~~~~~~~~l~~~~-----~~~~-~iw~~~--~~-~~~~~~~~~~i~~~~~sp~~~-~la~~~--~~~~~i~~~ 501 (501)
.+++ +. |.-.+ ++.. .||-.+ .. .........++.+|+.+.+.+ .|.+.+ +..+++|++
T Consensus 249 -~~rl--yv-LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 249 -SGRL--YV-LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp -TTEE--EE-EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred -cCeE--EE-EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 2232 10 11111 3344 788222 11 112233445788999999876 554433 456999875
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.003 Score=46.65 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=47.0
Q ss_pred eEEEEEcc---CC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 35 v~~v~~s~---~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|++|++.. || +.|++|+.|..||||+-+. .+.++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~---------- 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET---------- 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence 66777665 33 6899999999999999431 22333332
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEec
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~ 144 (501)
+.|.+++-. .+..|+.+-.+|+|-+|+-
T Consensus 43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence 557887765 3478999999999999975
No 347
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.56 E-value=0.077 Score=50.18 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=56.3
Q ss_pred eeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc--eeeEEEEcC-CCcE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF--DKFECSVSG-DGLH 398 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~-~~~~ 398 (501)
+......+.+++.+|++++.|+.+. |.|.|+|+.+ +..++.++|-.+......+........ ......-.+ ...+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 4455667899999999998888765 9999999986 777777777665421100000000000 000000000 0123
Q ss_pred E-EEEeCCCeEEEEecCCCCcc
Q 010801 399 F-ATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 399 l-~s~~~dg~i~iwd~~~~~~~ 419 (501)
| +-.-.-|.|.||.+..|..+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEE
Confidence 3 34566899999999998544
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.55 E-value=0.01 Score=43.85 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=40.6
Q ss_pred cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe---cCCCcEEEEEeCCCeE
Q 010801 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFV 292 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~~~~~dg~i 292 (501)
..+.|.++.-... ..++.+ .+|+|-+|+-. .+..+ ++ ....+.++.+. .+|...|++|-.+|.|
T Consensus 41 e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR---iK------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 41 ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR---IK------SKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee---ec------cCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3456777776655 468888 99999999764 23333 22 11224555443 3444579999989887
Q ss_pred E
Q 010801 293 R 293 (501)
Q Consensus 293 ~ 293 (501)
-
T Consensus 109 e 109 (111)
T PF14783_consen 109 E 109 (111)
T ss_pred E
Confidence 4
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.55 E-value=0.055 Score=51.03 Aligned_cols=280 Identities=13% Similarity=0.224 Sum_probs=135.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+....|||+|++||... ++.|.+++..+++.. .+...... ..+.|- + +++-.-+
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~----------------~lT~dg~~---~i~nG~-~--dwvyeEE 98 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET----------------QLTTDGEP---GIYNGV-P--DWVYEEE 98 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE----------------ESES--TT---TEEESB-----HHHHHH
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE----------------Eeccccce---eEEcCc-c--ceecccc
Confidence 46789999999999999875 678999987766431 00000000 001111 1 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc---cc----eeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 112 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD---QK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.-+.-..+-|| ||+++|+... .+..|+.+.+.. .. ......+...
T Consensus 99 v~~~~~~~~WS--pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~------------------------- 151 (353)
T PF00930_consen 99 VFDRRSAVWWS--PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA------------------------- 151 (353)
T ss_dssp TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT-------------------------
T ss_pred ccccccceEEC--CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC-------------------------
Confidence 11334678898 8999999876 455555554432 11 1111111100
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEe-ecCCcccceEEEEecCCCCEEEEE---c-C--CeEEEEECCCCCeeeeee
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVSA---D-D--LRINLWNLEISDQCFNIV 256 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~---~-d--~~i~iwd~~~~~~~~~~~ 256 (501)
|.-.+.-.+.++++......+.... -......-+..+.|.++++.|+.. + . ..+.+.|..++.......
T Consensus 152 ----G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 152 ----GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp ----TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred ----CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 0000122445566654432211110 002335667899999999844442 2 2 245556766433222211
Q ss_pred ecCCCCCCCcccceEEEEEe-cCCCcEEEEEeCCCeEEEE--EccCCcccccccceeecccccCCCcceeeeccccee-E
Q 010801 257 DMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-D 332 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~ 332 (501)
... .+--..-....+. +++..+|.....+|--+|| +...+.. +.+.. ..-.|. -
T Consensus 228 e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-----~~lT~-------------G~~~V~~i 285 (353)
T PF00930_consen 228 ETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-----RQLTS-------------GDWEVTSI 285 (353)
T ss_dssp EES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-----EESS--------------SSS-EEEE
T ss_pred ecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-----ecccc-------------Cceeeccc
Confidence 111 1111222344554 6664666666677765555 4444431 11111 123453 4
Q ss_pred EEEeeCCCEEE-EEc--C-CcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 333 IKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 333 ~~~sp~~~~l~-~~~--~-~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
+.++++++.|. ++. + ..-.||.+... +..+..+....... ..+.|||++++++-.
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TTSSEEEEE
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCCCCEEEEE
Confidence 67788877654 442 2 56677776654 45556665444331 379999999987743
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.52 E-value=0.014 Score=56.05 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred eEEEEecCCCCEEEEE-cCCeEEEE-ECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 221 INSISNNSDCETFVSA-DDLRINLW-NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
-....|.+.+ .+|+- .+++|.|+ +++ ... .+.+ .++ ..+..+-. | .+|...+.+ .|.+||+.
T Consensus 71 g~~~vw~~~n-~yAv~~~~~~I~I~kn~~-~~~-~k~i-----~~~---~~~~~If~---G-~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 71 GLSFVWSSRN-RYAVLESSSTIKIYKNFK-NEV-VKSI-----KLP---FSVEKIFG---G-NLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp -SEEEE-TSS-EEEEE-TTS-EEEEETTE-E-T-T----------S---S-EEEEE----S-SSEEEEETT-EEEEE-TT
T ss_pred eeEEEEecCc-cEEEEECCCeEEEEEcCc-ccc-ceEE-----cCC---cccceEEc---C-cEEEEECCC-CEEEEEhh
Confidence 3457888855 46666 78889996 343 211 1111 011 12333322 6 777766554 89999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeC
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~ 357 (501)
+++.. +.++. .+|..+.|+++|++++..++..+.+++...
T Consensus 135 ~~~~i----~~i~v---------------~~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 135 TGKLI----RRIDV---------------SAVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp T--EE----EEESS----------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred Hccee----eEEec---------------CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 98655 44444 348999999999999988888999988753
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.51 E-value=0.061 Score=53.13 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.+..|+.++.||.|+.+|.++|+.+ ...+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l-W~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL-WKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee-eEEE
Confidence 4568888999999999999999555 3443
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00061 Score=64.88 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=63.4
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE-EEEEecCCCcEEEEEeCCCeEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
...+.-+.|+|.-.++|.+ .+|.|.+..++ -.+... ++-|...++ +++|.||| ++|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 4467789999999999999 99999999988 444443 444555555 99999999 999999999999999
Q ss_pred EccCCcccc
Q 010801 296 DMRQSALCD 304 (501)
Q Consensus 296 d~~~~~~~~ 304 (501)
|..++....
T Consensus 90 Dve~~~~l~ 98 (665)
T KOG4640|consen 90 DVEKGGRLV 98 (665)
T ss_pred EccCCCcee
Confidence 999886553
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.03 Score=57.02 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=85.4
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--------CEEEEEcCCcEE
Q 010801 281 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK 351 (501)
Q Consensus 281 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--------~~l~~~~~~~i~ 351 (501)
++|+.- .....|+-.|+..|+.+ ..|..+. ..+|. .+.|+. +.++.-+++.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~--~~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------Cccee--EecccccccccCCCceEEEECCCceE
Confidence 444433 34678999999999766 5555521 11233 333432 223333569999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
.||.+..+..+..-..+.. .....| .+++-+.+| +||.|+.+|.||+||-. +..
T Consensus 556 riDpR~~~~k~v~~~~k~Y---------~~~~~F--s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~------------- 609 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQY---------SSKNNF--SCFATTEDG-YIAVGSNKGDIRLYDRL-GKR------------- 609 (794)
T ss_pred EeccCCCCCceeecccccc---------ccCCCc--eEEEecCCc-eEEEEeCCCcEEeeccc-chh-------------
Confidence 9999864422221122211 111222 567777666 78999999999999832 210
Q ss_pred ceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+ ...+.+...+|.+|..+.||++|++.|..-+.++.
T Consensus 610 A---------------------------------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 610 A---------------------------------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred h---------------------------------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 0 00112344589999999999999988888776654
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.11 Score=49.86 Aligned_cols=165 Identities=15% Similarity=0.005 Sum_probs=80.0
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCC--CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
+.+.++.|+.+.++++...||.++++|+. +.. .+.+.. ....-....+....+..+| ++.-..++.+.+..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF---QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce---eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEe
Confidence 78999999987766666699999999987 333 111110 0011112223333444455 44444555554443
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
--...... +... ..|.....+..+........++.+....+.. .++.+.+.+-.. .+. +... +.+
T Consensus 154 n~~~~~~~---~~~~---~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~-~~i--- 219 (410)
T PF04841_consen 154 NIDEPVKL---RRLP---EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSD-GPI--- 219 (410)
T ss_pred Cccccchh---hccc---cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCC-CCe---
Confidence 22211110 0000 0111100000011111112344444433332 335555443321 111 1111 111
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..++.||+|++||.-..+|.+.+.+.+-.
T Consensus 220 ------------~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 220 ------------IKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ------------EEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 68999999999999999999999876544
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.45 E-value=0.18 Score=51.56 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=62.6
Q ss_pred CCcceeeEEEEcCC-CcEEEEEeC----------CCeEEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccce
Q 010801 382 DSIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSN 448 (501)
Q Consensus 382 ~~~~~~~~~~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 448 (501)
++...+.++.|..| +.+++.|.. .|.|.||.+..+..+ ..+. .-++.+.++... +|++
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~f---ngkl----- 842 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEF---NGKL----- 842 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhh---CCeE-----
Confidence 34433456678887 778887763 588889988873232 2221 122333333332 5665
Q ss_pred eeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 449 LTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 449 l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+|.-+..-. .-|..++.+.....+..++..+...-.|+.+++|.
T Consensus 843 lA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 843 LAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 554444333 55666656666667778888898888899888886
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.39 E-value=0.083 Score=49.10 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=70.0
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
...++|++++-- +..|+++.++.|.+|++.........- .......+.++... + +++++|.....+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 346778888765 345888878999999999544133221 11122355666555 5 689999988888888
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~ 356 (501)
..+..... ...+.. .. ....++++.+-++++.+++++. |.+.++...
T Consensus 155 ~~~~~~~~---l~~va~---d~--------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK---LILVAR---DY--------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE----EEEEEE---ES--------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE---EEEEEe---cC--------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55542110 011111 00 1356889999877777777764 999999876
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0014 Score=62.60 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=71.2
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..+..+.|+|.-.+||.+.. |.|-+..+. .+.+.++..+...+. .+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 46888999999999999864 989998886 566666765554431 3899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeec
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
+|++.|++++..+......-..++.++.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999866644333444455555554
No 358
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.28 E-value=0.16 Score=47.45 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=55.8
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeecc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA 313 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~ 313 (501)
...++.+||+. ..+.++++++. .....+..|.|. |+...-++.+....+|..|-- ..++ ....++++.
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~i- 290 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDI- 290 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE-
T ss_pred ccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEEC-
Confidence 35789999999 66777776543 222334566664 444233555555566665543 3332 122233333
Q ss_pred cccCCCcc-------eeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE
Q 010801 314 AESHGSKS-------FFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 314 ~~~~~~~~-------~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~ 364 (501)
...+.... .+..-..-|+.+..|.|.++|.... .|.|+.||+....++...
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 11111111 1122245689999999999998775 499999999765555433
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.15 Score=46.40 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=58.3
Q ss_pred CCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
..+-..-+.++|+||+ +.|+.+.. .+.|.-|++.. +....+....+ +....+..-.++...+|.
T Consensus 159 ~~~~~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~------------~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 159 DDDLTIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVD------------FDEEPGLPDGMAVDADGN 225 (307)
T ss_pred cCcEEecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEE------------ccCCCCCCCceEEeCCCC
Confidence 3334455889999999 66666555 58888888763 21111100111 111245677888888898
Q ss_pred EEEEEc-C-CcEEEEEeeCCCCceeEeecccc
Q 010801 341 HLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 341 ~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
+-+++. . +.|.+|+.+ ++++..+..+..
T Consensus 226 lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~ 255 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD--GKLLGEIKLPVK 255 (307)
T ss_pred EEEecccCCceEEEECCC--CcEEEEEECCCC
Confidence 876543 3 499999985 888888876643
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.23 E-value=0.00051 Score=40.11 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=28.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.|...|+++.|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4678899999999999999999999999996
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.043 Score=47.61 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred EEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---
Q 010801 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--- 346 (501)
..++++|..+.-++.+-.-|+ ..++|....... .++.. .....|.||. .|||||++|.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~p----v~~~s-----~~~RHfyGHG------vfs~dG~~LYATEndf 135 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEP----VTLVS-----QEGRHFYGHG------VFSPDGRLLYATENDF 135 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCc----EEEec-----ccCceeeccc------ccCCCCcEEEeecCCC
Confidence 467788877667777777666 457888776543 22211 1222344553 5999999998752
Q ss_pred C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 347 ~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
| |.|-|||.+...+.+.++..|.-.. ..+.|.+||+.|+.+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan 180 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence 2 8899999986556677777776543 5799999999988764
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.21 E-value=0.16 Score=46.03 Aligned_cols=230 Identities=12% Similarity=0.064 Sum_probs=118.0
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 306 (501)
..++.|+.| ++| +.+++........++. +...|..+...|+- +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 356788888 777 8999983233333321 22239999999987 6665554 599999999875433211
Q ss_pred cceeecccccCCCcceeeecccceeEEE---EeeCCCEEEEEcCCcEEEEEeeCC---C-CceeEeeccccccccccccC
Q 010801 307 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~sp~~~~l~~~~~~~i~lwd~~~~---~-~~~~~~~~~~~~~~~~~~~~ 379 (501)
...... .... ...-......+...+ -...+.+|+++....|.+|..... . +..+++......
T Consensus 73 ~~~~~~-~~~~--~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-------- 141 (275)
T PF00780_consen 73 APLAFP-KSRS--LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP-------- 141 (275)
T ss_pred cccccc-cccc--ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence 000000 0000 000000112344443 122345666666689999988742 1 344555544333
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc---------CcccceeeccCCccccCccceee
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---------NENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
..++|. ++.|+.|..++ ..+.|+.++... ..+.... .....+......++.+ |.
T Consensus 142 --------~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll 204 (275)
T PF00780_consen 142 --------SSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LL 204 (275)
T ss_pred --------EEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceE-----EE
Confidence 688888 55677776554 677899866332 1111111 1111222222112333 33
Q ss_pred eecccceeec--cccCCcc-cccccCCCeEEEEEccCCCEEEEeeCCeEEEEeC
Q 010801 451 RGLYRQAHEN--SSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 451 ~~~~~~~~iw--~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 501 (501)
.- +...++ ..++... ....-+....++++ ...+|.+..++.+-||+.
T Consensus 205 ~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 205 CY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred Ee--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 32 222233 2222222 22333445556666 456888888888988863
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0017 Score=39.88 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEec
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~ 62 (501)
...|.+++|+|..++||.|+.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999999999999999999983
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.13 E-value=0.0014 Score=38.09 Aligned_cols=37 Identities=27% Similarity=0.617 Sum_probs=30.8
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEe
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~ 143 (501)
+...+..|. ..|.+++|. +++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~------------~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT------------GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC------------CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 345566777 889999997 6678999999999999996
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.11 E-value=0.3 Score=47.33 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceEEEEEccCCCEEEEE-ecCC----cEEEEEecCCcC
Q 010801 34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKN 66 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg-~~dg----~i~iw~~~~~~~ 66 (501)
.+...++||||++||.+ +..| +++|+|+.+|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 44568899999999875 3333 599999998854
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.019 Score=54.06 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=67.6
Q ss_pred EEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee
Q 010801 234 VSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (501)
Q Consensus 234 ~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 311 (501)
+.| +++.|.-||.+..+. .+.....+ .+. ......|.+-..+| ++++|+.+|.|++||- .+..-. ..
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~k--qy~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA-- 466 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSK--QYS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA-- 466 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeecc--ccc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc--
Confidence 347 899999999885544 22211000 111 12334566666665 8999999999999996 332110 12
Q ss_pred cccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++...+|..+..+.||++|++.++..+.|.++.
T Consensus 467 -----------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 467 -----------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred -----------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2345678999999999999998888888888765
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.015 Score=54.67 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=87.8
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE--------EEEEcCCcEEEE
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW 353 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~--------l~~~~~~~i~lw 353 (501)
+|..+.....++-.|+..|+.+ ..|.. ...|+-+.+.|+.+. |+.-+++.|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~--------------~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKF--------------EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeec--------------cCCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 4555666677888899988765 44544 234777778876542 333356899999
Q ss_pred EeeCCCC-ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc
Q 010801 354 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (501)
Q Consensus 354 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 432 (501)
|.+..++ .+..-++|.... ...| .|++-..+| +|+.||.+|.||+||- .+..-
T Consensus 410 DpRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A------------- 463 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYST---------KNNF--SCFATTESG-YIVVGSLKGDIRLYDR-IGRRA------------- 463 (644)
T ss_pred cccccCcceeeeeecccccc---------cccc--ceeeecCCc-eEEEeecCCcEEeehh-hhhhh-------------
Confidence 9886454 233333333221 1111 344444444 8999999999999997 33111
Q ss_pred eeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEE
Q 010801 433 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 498 (501)
...+.++..+|.++..+.+|++|.+.|..-+.+
T Consensus 464 ---------------------------------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 464 ---------------------------------KTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred ---------------------------------hhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 011224455888999999999988888776544
No 368
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.02 E-value=0.13 Score=44.19 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=78.2
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~l 352 (501)
...++...+++.|+..+.+.--|..++++..+. +.. ..|.+-+.- -|.+++.|.. |.+++
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--ILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--hhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 344554478888999999999999998754321 111 122222222 3778888875 99999
Q ss_pred EEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
.+..+ +.....+...+... ......+++.++..|++|+..+..|..+..++.
T Consensus 78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 99987 76666666544322 356777899999999999999999998875553
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.33 Score=45.09 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=80.8
Q ss_pred CeEEEEECCCC---CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc-ccccccceeeccc
Q 010801 239 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 314 (501)
Q Consensus 239 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~ 314 (501)
|.|.++++... ...++.+ ......++|++++-- .+ + |+++ ..+.|.+|++...+ .. +.-.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~----~~~~--- 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLL----KKAF--- 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEE----EEEE---
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccch----hhhe---
Confidence 88999999853 1122221 112346778888766 44 4 4443 35799999998876 22 1111
Q ss_pred ccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 315 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
+...+........+.+|+.|+. ..+.++..+.....+..+....... .++++.|-
T Consensus 126 -----------~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 126 -----------YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp -----------E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred -----------ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 1122333344444679999875 8888887764344344443322221 12678888
Q ss_pred CCCcEEEEEeCCCeEEEEecCC
Q 010801 394 GDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++++.++.+..+|.+.++....
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 6767999999999999998863
No 370
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.93 E-value=0.34 Score=44.96 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred ccceeEEEEeeCCC-EEEEEcC---Cc--EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 327 IASISDIKFANDGQ-HLLSRDY---MN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 327 ~~~i~~~~~sp~~~-~l~~~~~---~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
..++..+.|+|... .|+-+-. .. -|||-+++++.....+..+.... .+..=-|.|||..|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e-------------~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE-------------SVGHEFWVPDGSTIW 253 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE-------------EEEEEEE-TTSS-EE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc-------------ccccccccCCCCEEE
Confidence 56889999999654 4444421 23 38898887676665554443211 013456899998766
Q ss_pred EEeC-----CCeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 401 TGSY-----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 401 s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
--+. +..|.-+|+.+++.. ..... + .+.-+..+.++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~---p-~~~H~~ss~Dg~L 296 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERR-RLMEM---P-WCSHFMSSPDGKL 296 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EE-EEEEE-----SEEEEEE-TTSSE
T ss_pred EEeecCCCCceEEEeeCCCCCCce-EEEeC---C-ceeeeEEcCCCCE
Confidence 4332 445677788877432 11111 1 2445555456665
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.88 E-value=0.33 Score=43.95 Aligned_cols=252 Identities=11% Similarity=0.084 Sum_probs=125.6
Q ss_pred cCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEE
Q 010801 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (501)
Q Consensus 42 ~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~ 121 (501)
..++.|+.|+++| +.+++...... ..... +. ..|..+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------------~~~i~--~~------------~~I~ql~v 43 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------------PTRIL--KL------------SSITQLSV 43 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------------ceeEe--ec------------ceEEEEEE
Confidence 4678999999998 88998832211 01111 11 34888888
Q ss_pred eecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccc-cccccccCccccC---CCCCCcccccceeccCcceE
Q 010801 122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-NTLLAEKNFMNEH---NPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 122 ~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 197 (501)
. ++-+.+++-+ |+.+.++++..-................. ........+.... .......+.. +....+.
T Consensus 44 l--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v---a~kk~i~ 117 (275)
T PF00780_consen 44 L--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV---AVKKKIL 117 (275)
T ss_pred e--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE---EECCEEE
Confidence 7 4445555554 59999999876543321100000000000 0000011111111 1111112222 2244777
Q ss_pred EEeccCce-ee-eeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-----CCCcccce
Q 010801 198 IANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVI 270 (501)
Q Consensus 198 ~w~~~~~~-~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v 270 (501)
++...... .. ...+.+ .-...+.+++|. ++.++.|..+...+.|+. .+....+....... ......++
T Consensus 118 i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCce
Confidence 77776532 22 344443 234678889988 567888855568888988 33333332111111 00112233
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcE
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
..+... ++ .+|++- |..-.+.|. .|+......-.|. ....++++. ..||++-.++.|
T Consensus 193 ~~~~~~-~~-e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~----------------~~p~~~~~~--~pyli~~~~~~i 249 (275)
T PF00780_consen 193 GIFQLS-DN-EFLLCY--DNIGVFVNK-NGEPSRKSTIQWS----------------SAPQSVAYS--SPYLIAFSSNSI 249 (275)
T ss_pred EEEEeC-Cc-eEEEEe--cceEEEEcC-CCCcCcccEEEcC----------------CchhEEEEE--CCEEEEECCCEE
Confidence 344433 34 555542 333333343 3332211111222 245566664 458887777789
Q ss_pred EEEEeeCCCCceeEeeccc
Q 010801 351 KLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~ 369 (501)
.||++.+ ++.++.+....
T Consensus 250 EV~~~~~-~~lvQ~i~~~~ 267 (275)
T PF00780_consen 250 EVRSLET-GELVQTIPLPN 267 (275)
T ss_pred EEEECcC-CcEEEEEECCC
Confidence 9999996 88888887543
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.67 E-value=0.98 Score=46.53 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=67.2
Q ss_pred ceEEEEEecCCCcEEEEEeC----------CCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 269 VITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~----------dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.+.++.|..|...++++|+. .|.|.++.... +++.....+.. .+.+.++..-
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v----------------~Gav~aL~~f- 838 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV----------------KGAVYALVEF- 838 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee----------------ccceeehhhh-
Confidence 34555687773377777754 47788887766 22211111111 2344444322
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+++|+- ...|++|+..+ .+.++.-..+...+ ..+...-.|..++.|.-=+++.+-..+.
T Consensus 839 ngkllA~I-n~~vrLye~t~-~~eLr~e~~~~~~~---------------~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 839 NGKLLAGI-NQSVRLYEWTT-ERELRIECNISNPI---------------IALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred CCeEEEec-CcEEEEEEccc-cceehhhhcccCCe---------------EEEEEEecCcEEEEeeccceEEEEEEec
Confidence 46666543 37899999976 55554444444443 4677777888999998878877765543
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.092 Score=45.68 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=47.0
Q ss_pred cccceEEEEecCCCCEEEEE-cCC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 217 HDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
+...|.-++.-+||..++.+ ..| .--+--....++.++.+++.+.........|-+++.+.+. .+++ +.-..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence 34566777777888766664 322 1111111123344443333322223344567788888665 4444 444456
Q ss_pred eEEEEEccCCccc
Q 010801 291 FVRLVDMRQSALC 303 (501)
Q Consensus 291 ~i~~wd~~~~~~~ 303 (501)
..-+||..++...
T Consensus 303 ~~vi~da~tG~vv 315 (366)
T COG3490 303 RAVIWDAATGAVV 315 (366)
T ss_pred eEEEEEcCCCcEE
Confidence 6789999998654
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.94 Score=43.18 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=77.2
Q ss_pred EEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---CeEEEEE
Q 010801 222 NSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVD 296 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~~wd 296 (501)
..+++.|+|+.+..+ .++.|.+.|.. .....+ ... .....-......+.++|+| +.+.+.... +.+...|
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~--~~~-~~~~~~~~~P~~i~v~~~g-~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR--GSV-GSLVGVGTGPAGIAVDPDG-NRVYVANDGSGSNNVLKID 237 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec--ccc-ccccccCCCCceEEECCCC-CEEEEEeccCCCceEEEEe
Confidence 778999999977776 69999999977 332221 000 0011122334778999999 655544443 5899999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~ 366 (501)
..++..... .... +-. ....+..+|+|+++.+.. . +.+.+-|..+ ......+.
T Consensus 238 ~~~~~v~~~---~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~-~~v~~~~~ 292 (381)
T COG3391 238 TATGNVTAT---DLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT-DRVVKTGP 292 (381)
T ss_pred CCCceEEEe---cccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC-Cceeeeec
Confidence 888754321 0111 001 346788999999988773 3 8899988875 45444444
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=1.2 Score=42.48 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=99.8
Q ss_pred ceEEEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE-EeCCCeEEE
Q 010801 220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRL 294 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~ 294 (501)
....++++++++.+..+ . ++++.+.|..+.. ..... ..+- .+ ..++++|+| +.++. -..++.|.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~------~vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATI------PVGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEE------ecCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence 44578999999888876 4 5888888877433 33322 1111 22 789999999 64444 447899999
Q ss_pred EEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC----CcEEEEEeeCCCCceeE-eecc
Q 010801 295 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH 368 (501)
Q Consensus 295 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~----~~i~lwd~~~~~~~~~~-~~~~ 368 (501)
.|........ ........ ...-..+.++|+|+++....+ +.+...|..+ +..... +...
T Consensus 187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~ 251 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG 251 (381)
T ss_pred EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence 9977654321 00000111 134577889999997776543 4777777764 333332 2222
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
.. .+ ..+..+|+|+.+.+... .+.+.+-|..+.
T Consensus 252 ~~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 252 SG-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cC-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 21 11 46899999998887744 588999888776
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.15 E-value=1.3 Score=44.64 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=64.9
Q ss_pred eEEEEecCCCCEEEEE-cC-CeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEE--
Q 010801 221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLV-- 295 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w-- 295 (501)
...-.|+|+|+.+++. +. ..+++.+.....+. ..+.+...... .....|..+.|+||| ..++... +|.|.+=
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE-EEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6667899998877776 32 23444443322222 11112111111 234579999999999 7666554 4677662
Q ss_pred -EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCc
Q 010801 296 -DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP 361 (501)
Q Consensus 296 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~ 361 (501)
....+.........+. .+....+.++.|.+++.+++...++.-.+|.+.-++..
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 3223321100000011 11123467899999998665444444445655543443
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=1 Score=41.07 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=57.1
Q ss_pred cceeEEEEeeCCCEEEEEcC--CcEEEEEeeC-CC----Cc-eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DS----TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~-~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
..-+.++||||++.|..++. +.|+-|++.. .+ +. ...+....+.. =.++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------------DG~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------------DGMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------------CceEEeCCCCEE
Confidence 34688999999998887743 7888887751 11 11 11111111110 268888889887
Q ss_pred EEEeCCC-eEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 400 ATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 400 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+++-.+| .|.+|+.+ + .+...+......+.+++|--
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeC
Confidence 6555554 89999988 6 34455555555666666654
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=0.43 Score=42.45 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=86.7
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE-
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD- 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd- 296 (501)
.+.+.+++++++.++.- .++.-.+|-....+..... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999987763 3444444444422322221 1 22367788999998 8887777777767764
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCc-eeEeeccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL 371 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~-~~~~~~~~~~ 371 (501)
...+............ ...|..+.+||||..++.-. ++.|.+--+..+..- -..+......
T Consensus 95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 3333221100011100 12799999999999888542 477877766532221 1111111000
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.. .....++.++|.+++.+++.+...+
T Consensus 161 ~~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 161 AP--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cc--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 00 0011226899999998877665543
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.02 E-value=0.024 Score=34.86 Aligned_cols=30 Identities=20% Similarity=0.699 Sum_probs=27.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~ 145 (501)
..|..++|+ |..+++|.++.||.|.++.+.
T Consensus 12 ~~v~~~~w~--P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWC--PTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEEC--CCCCEEEEEECCCeEEEEECC
Confidence 679999998 778899999999999999984
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.043 Score=56.29 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=73.5
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 359 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~ 359 (501)
-.++.|+..|.+...|+... +.. -.... .-.++|++++|+.+|++++.| .+|.|.+||... +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch---hhcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57888999999999888764 110 01111 014689999999999999998 569999999986 7
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++.+..+..+.. .+..+.+..++..+.++...|. +|.+.
T Consensus 163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 88888877666542 1235566666777888888776 56653
No 381
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.74 E-value=0.23 Score=49.52 Aligned_cols=88 Identities=17% Similarity=0.382 Sum_probs=58.1
Q ss_pred cchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCc
Q 010801 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (501)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (501)
..+|.....+... -..++-+.-|.-++.-++-+...++.|||...+..
T Consensus 16 ~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------------------------ 63 (631)
T PF12234_consen 16 KIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------------------------ 63 (631)
T ss_pred eEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE------------------------
Confidence 3456666555422 12344455555555544444556899999887642
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEec
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~ 144 (501)
++...+. .. +.|.++.|...|+++.+++.+..+.|.++--
T Consensus 64 -E~~~~f~-~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 64 -EYEESFS-ED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred -EEeeeec-CC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 2223332 22 7799999998899999999999999999853
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.70 E-value=0.48 Score=42.12 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=83.8
Q ss_pred ceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 329 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+.+.+++++++.++... + ..++++... +.......+. .. +.-.|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~-~l----------------~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG-SL----------------TRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC-cc----------------ccccccCCCCEEEEEcC
Confidence 688999999999887644 4 455555432 3333333333 21 57899999888877777
Q ss_pred CCeEEEEe-cCCCCcceEEEeccc--CcccceeeccCCccccCccceeeeecccc--eeec------cccC---Ccc---
Q 010801 405 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYRQ--AHEN------SSSG---HHE--- 467 (501)
Q Consensus 405 dg~i~iwd-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~~~~~~~--~~iw------~~~~---~~~--- 467 (501)
+...+++. ..++......+.... ..|..+.++| +|.. ++....++ .++| +.+. .+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 77777774 333433333333332 2788999998 6665 44444322 2666 1122 111
Q ss_pred -cccccCCCeEEEEEccCCCEEEEeeC
Q 010801 468 -LSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 468 -~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
........+++++|.+++.+++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCC
Confidence 11123468899999999998877763
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=1.4 Score=38.99 Aligned_cols=183 Identities=10% Similarity=0.139 Sum_probs=108.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|.++.|+ |+.+.|.+......-.|+=..+|+.+......
T Consensus 86 ~nvS~LTyn--p~~rtLFav~n~p~~iVElt~~GdlirtiPL~------------------------------------- 126 (316)
T COG3204 86 ANVSSLTYN--PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------------------------------------- 126 (316)
T ss_pred ccccceeeC--CCcceEEEecCCCceEEEEecCCceEEEeccc-------------------------------------
Confidence 569999998 67778888777777777766677766554221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeee--ecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v 270 (501)
+ -.....+++..+|++.++- .++.+.++.++......... .++.......+...
T Consensus 127 ----------------------g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf 183 (316)
T COG3204 127 ----------------------G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF 183 (316)
T ss_pred ----------------------c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence 1 1223457777788777777 89999999888544333221 11212222225667
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEcC-C
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-M 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~~-~ 348 (501)
-.++|+|.. ..|..+-+-.-+.||....... .+..| ....+...-.-.-..+.++.|++... +|+-+.. +
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~-~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVH-ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccc-cccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 899999998 8888888877788887664321 11110 00000000000013578888987544 4444433 6
Q ss_pred cEEEEEeeCCCCceeEeecc
Q 010801 349 NLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~ 368 (501)
.+.-.|.. +.++..+.-+
T Consensus 256 ~l~Evd~~--G~~~~~lsL~ 273 (316)
T COG3204 256 RLLEVDLS--GEVIELLSLT 273 (316)
T ss_pred eEEEEecC--CCeeeeEEec
Confidence 66666664 6656555433
No 384
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.68 E-value=1.3 Score=44.81 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=51.7
Q ss_pred cccceEEEEec--CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC--Cc---EEEEEeC
Q 010801 217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS 288 (501)
Q Consensus 217 ~~~~v~~l~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~ 288 (501)
-...+++++++ ...++||++ ....|.||-.......... ..-..+...|.+|+|-++. +. .+++++-
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34588999998 788888888 7778888766532111110 0012356678899997654 12 7778888
Q ss_pred CCeEEEEEc
Q 010801 289 RGFVRLVDM 297 (501)
Q Consensus 289 dg~i~~wd~ 297 (501)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.66 E-value=0.25 Score=49.63 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=37.4
Q ss_pred cceeEEEEeeCCCEEEEEc-------CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE
Q 010801 328 ASISDIKFANDGQHLLSRD-------YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 398 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-------~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 398 (501)
..+.+.+++|||+.++... +. .|.+++.. +.......+.. . +.-.|+|||+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-~----------------t~PsWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-L----------------TRPSWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-C----------------CCceECCCCCc
Confidence 3678999999999887542 33 45555542 33322223222 1 57999999998
Q ss_pred EEEEeCC
Q 010801 399 FATGSYS 405 (501)
Q Consensus 399 l~s~~~d 405 (501)
|++....
T Consensus 411 lw~v~dg 417 (591)
T PRK13616 411 VWVVVDG 417 (591)
T ss_pred eEEEecC
Confidence 8887643
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.65 E-value=0.74 Score=46.02 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=71.6
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd 296 (501)
...-+.-+.-++..++. ...++.|||.+........ .+ ...+.|.++.|. |++ +.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence 33344444555555555 6778999999843322221 12 346789999986 677 7788888888999985
Q ss_pred ccCC-----cccccccceeecccccCCCcceeeecc-cceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 297 MRQS-----ALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 297 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
-... ......++.+. +..|+ .+|.+..|.++|.+++++ ++.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 4221 11111111111 12333 578999999999766544 4789998754
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=1.6 Score=38.70 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=103.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (501)
...|+++.|+|+.+.|++......-.|+=...|+.+ -...+.+ |+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-------------------------rtiPL~g~~D--------- 130 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-------------------------RTIPLTGFSD--------- 130 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE-------------------------EEecccccCC---------
Confidence 345999999999999888777766666655555432 0111222 33
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
--.|++. .++++.++--.++.+.++.+............
T Consensus 131 -----pE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~---------------------------------- 169 (316)
T COG3204 131 -----PETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQ---------------------------------- 169 (316)
T ss_pred -----hhHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccce----------------------------------
Confidence 3356775 45566655568899998887655322111000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC--CCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 267 (501)
.-.+... .........++|.|..+.|..+ .-+-+.||.++.....+..-... .....-.-
T Consensus 170 ----------------~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 170 ----------------KIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred ----------------EEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 0011111 1225677889999999999998 77778887766222122110000 00000112
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..|.++.|++..+.+|+.+.+++.+.-.|....
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 356788888766477787888888888887654
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.054 Score=55.60 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 339 ~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+-+++.|++ |.+-..|...+-.+ + |.+.. ...+|++++|+.+|++++.|-.+|.|.+||+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~---~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~- 162 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP---L--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA- 162 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch---h--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC-
Confidence 557888877 99999988632111 1 11110 1123489999999999999999999999999987
Q ss_pred cceEEEecccCcccceeecc
Q 010801 418 AGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~ 437 (501)
.+.+.+..|..+...+.+..
T Consensus 163 k~l~~i~e~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVG 182 (1206)
T ss_pred cceeeeeecCCccceEEEEE
Confidence 44477777777777766654
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.42 E-value=2 Score=39.04 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....|.+|.|.|++.+.+.+..|.|+.=+.......... ...........+..++|.+++ ...++|+. |.+ +.
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~ 257 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LV 257 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EE
T ss_pred CccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EE
Confidence 3457899999999998888779999998872212222111 000112233457899999987 77776554 433 33
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
....++ .++.... . ..-...+..+.|.++.+-++.|.+|.|--|
T Consensus 258 S~DgGk-------tW~~~~~-~------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 258 STDGGK-------TWQKDRV-G------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSTTS-------S-EE-GG-G------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eCCCCc-------cceECcc-c------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 444442 2222000 0 001245889999988888999988877554
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.40 E-value=2.3 Score=39.60 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=36.1
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
..++|+|.|+|+++++-..|.|++++.. +........+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4578999999987776699999999933 33212221111 122334567899999995
No 391
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.35 E-value=2.9 Score=40.42 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=37.6
Q ss_pred ccceEEEEecCCCCEEEEEc-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 218 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
-...+.|+|.|||++|++-. .|.|++++..... ......+.......-......|+++|+
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCC
Confidence 34678899999998888775 7999999765222 111111111001112566789999987
No 392
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.32 E-value=3.4 Score=41.01 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.9
Q ss_pred CEEEEeeCCCeEEEEeccccceeeee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
..++.++.++.|.-+|.++++.....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 67888888999999999999876654
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.00 E-value=0.77 Score=44.53 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=85.9
Q ss_pred ccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC---cEEEEEeCCCe
Q 010801 218 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGF 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~~~~~dg~ 291 (501)
-.++..++|....+.+++. .+|.+++=|...- +.-..|..+.|.|-+. --|+.......
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~vi---------------GqFEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVI---------------GQFEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCccEe---------------eccceeeeeeecCcccCCCCceEEEeccce
Confidence 3578889998444444554 4666665443311 1223588999998641 13444466778
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeE-eeccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE 369 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~ 369 (501)
|.+|-+......... .....--+- +.. ..---..+.|+|....|+.-+. ..-.+++++.++..+.. +++.
T Consensus 84 VtVWqL~~s~~e~~K-~l~sQtcEi---~e~---~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 84 VTVWQLCPSTTERNK-LLMSQTCEI---REP---FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred EEEEEeccCcccccc-ceeeeeeec---cCC---cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 999988633211110 000000000 000 0112356889999988876543 33355666654444332 3322
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEec
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH 413 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~ 413 (501)
+.+ .+.+|.+||+.|+.+ +..=.-+|||-
T Consensus 156 G~I---------------hCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 GLI---------------HCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceE---------------EEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 222 799999999887754 33345688884
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.99 E-value=0.077 Score=44.62 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=62.9
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE-EEeeCCCEEEEE-cCCcEEEEEeeCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI-KFANDGQHLLSR-DYMNLKLWDIRMD 358 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~sp~~~~l~~~-~~~~i~lwd~~~~ 358 (501)
..+++|+.+|.|.+|....-.... ..+.. + ...|..+ .-..++.+..++ .++.||.|++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s------------~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p- 133 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS------------G-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP- 133 (238)
T ss_pred ceEEeecccceEEEecCCccchHH---Hhhhc------------c-cccceeccccccccceeEEeccCCceeeecccc-
Confidence 679999999999999876321110 11111 0 1122222 222334455555 569999999985
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCC
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG 416 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~ 416 (501)
.+.+.....|.... ...+..+..+++|+.. |.|..++.|++..-
T Consensus 134 ~k~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 134 NKVLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CceeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77776666665321 0345555566777777 78888888888653
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.91 E-value=2.1 Score=41.74 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=42.1
Q ss_pred EEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+.|+|....|+.= ....-.++++......++. + + ...+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 46789988887764 3223334555533433332 1 2 245679999999999444444444445678886554
No 396
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.82 E-value=0.12 Score=30.77 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.9
Q ss_pred cceEEEEEecCCC--cEEEEEeCCCeEEEEEccC
Q 010801 268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 268 ~~v~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~ 299 (501)
+.+++++|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998763 5888888889999999995
No 397
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.80 E-value=2.4 Score=36.68 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
...+++.|+..+.+.--|..+|... -.+.+. ..|.+-+..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~-------------------------We~ilg---------------~RiE~sa~v 61 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAILG---------------VRIECSAIV 61 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEE-------------------------eehhhC---------------ceeeeeeEE
Confidence 3567888999999888898887642 111111 334433332
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
-|++++.|+..|.+++.+..+|...... .
T Consensus 62 ---vgdfVV~GCy~g~lYfl~~~tGs~~w~f------------------------------------------------~ 90 (354)
T KOG4649|consen 62 ---VGDFVVLGCYSGGLYFLCVKTGSQIWNF------------------------------------------------V 90 (354)
T ss_pred ---ECCEEEEEEccCcEEEEEecchhheeee------------------------------------------------e
Confidence 3668999999999999999998643321 1
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
. ...-.+ .....+++..+.+| .|+..+..|..+.+...+. +..+ ....+-+..|-. .
T Consensus 91 ~------------~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyks------kcgG--~~f~sP~i~~g~-~ 148 (354)
T KOG4649|consen 91 I------------LETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS------KCGG--GTFVSPVIAPGD-G 148 (354)
T ss_pred e------------hhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEec------ccCC--ceeccceecCCC-c
Confidence 0 001111 12346788899999 9999999999855544431 1222 222333455522 3
Q ss_pred EEEEEeCCCeEEEEEccC
Q 010801 282 LLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~ 299 (501)
.|..+...|.+.--....
T Consensus 149 sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eEEEEeccceEEEEccCC
Confidence 455556666655444443
No 398
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.68 E-value=1.6 Score=41.38 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=55.3
Q ss_pred ceEEEEEecCCCcEEEEEe-----------CCC-eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 269 VITSAEFHPIYCNLLAYSS-----------SRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~-----------~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
....++|.++| +++++-. ..+ .|.+++-.++.-......++.. .-.....+++.
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-------------~l~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-------------ELSMVTGLAVA 80 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-------------CCCCccceeEe
Confidence 45789999999 8777643 223 6777765433211111122222 12345889999
Q ss_pred eCCCEEEEEcCCcEE-EEEeeCCC----CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 337 NDGQHLLSRDYMNLK-LWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 337 p~~~~l~~~~~~~i~-lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++| ++++. ...|. +.|...++ +....+.+..... .+.... ...+.|.|||.+.++-+.
T Consensus 81 ~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~~~~~---~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 81 VGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NNHHHS---LNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred cCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Cccccc---ccCceECCCCCEEEeccc
Confidence 998 55543 33444 33543211 1111111111100 000000 157999999988776553
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.32 Score=50.66 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=42.2
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 285 (501)
....++++|+|.|+.++.| ..|++.-|... .. ....+. .+...+ ...|.+|+|-... .++++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le-ik~~ip-~Pp~~e--~yrvl~v~Wl~t~-eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE-IKSEIP-EPPVEE--NYRVLSVTWLSTQ-EFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc-cc-eeeccc-CCCcCC--CcceeEEEEecce-eEEEE
Confidence 4578899999999999999 99999988766 22 111111 111111 5789999998775 55443
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.55 E-value=1.2 Score=45.88 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=57.4
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccc-----ccccccCCCCCcceeeEEEEcCC---CcEE
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR-----PKLCDLYNNDSIFDKFECSVSGD---GLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~---~~~l 399 (501)
-.|..+.++|+|++|+..+...|.|-.+.........+.+....+ +.-..++.......+..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999977666666666632100011111110000 00001111222224478999996 5789
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEe
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+.=..|+++|+||+.......+++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987655544443
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.37 E-value=2.2 Score=40.48 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=55.4
Q ss_pred cceEEEEecCCCCEEEEE-c-----------C-CeEEEEECCCC-Cee--eeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 219 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.....|+|.++|+++++- . . +.|.+++-... +.. ..+ +...-.....+++.+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--- 83 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--- 83 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---
Confidence 456689999999988774 1 1 26766654322 221 122 11122345788898876
Q ss_pred EEEEeCCCeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 283 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|++++.....++.|........ ....+++.... .. ..+......++|.|||.+.++
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~--~~----~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGG--QI----NNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCC--CC----CcccccccCceECCCCCEEEe
Confidence 4444544433344543321111 11122222000 00 001245788999999987664
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.00 E-value=0.21 Score=29.78 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.1
Q ss_pred cceEEEEEccC-C--CEEEEEecCCcEEEEEecC
Q 010801 33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG 63 (501)
Q Consensus 33 ~~v~~v~~s~~-g--~~latg~~dg~i~iw~~~~ 63 (501)
++|++++|||+ + ++||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888889999999884
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.96 E-value=2.4 Score=40.05 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=58.2
Q ss_pred CcceEEEeccCceeeeeeEeecCCc-ccceEEEEec--CCCCEEEE-E-cCCeEEEEECCCCCe--eeeeeecCCCCCC-
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAH-DFNINSISNN--SDCETFVS-A-DDLRINLWNLEISDQ--CFNIVDMKPSNMD- 264 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~- 264 (501)
+..+.+||+......+.+. .+. ......+.|. |+...-++ + -...|..|-....+. ..+++++.....+
T Consensus 221 G~~l~vWD~~~r~~~Q~id---Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTID---LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTEEEEEEE---S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCcEeeEEe---cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4467777777643333332 222 2345567774 44443333 3 556666664422322 2233333322111
Q ss_pred ----C-------cccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCccee--eecccce
Q 010801 265 ----D-------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASI 330 (501)
Q Consensus 265 ----~-------~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i 330 (501)
. -..-|+.+..+.|. ++|.+.+ ..|.|+.||+.........-+++-+-.......... ....+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 1 13557999999998 7766655 499999999987533211112221100000000000 0112345
Q ss_pred eEEEEeeCCCEEEEE
Q 010801 331 SDIKFANDGQHLLSR 345 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~ 345 (501)
.-+..|.||+.|...
T Consensus 377 qMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTSSEEEEE
T ss_pred CeEEEccCCeEEEEE
Confidence 677888899887754
No 404
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.87 E-value=6.7 Score=37.98 Aligned_cols=115 Identities=11% Similarity=0.154 Sum_probs=65.8
Q ss_pred ceEEEEecCCCCEEEEE--cC----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC---
Q 010801 220 NINSISNNSDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--- 290 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--- 290 (501)
.+...+++|+|++++.+ .. ..++++|+.++ +.+.- .+.. .....+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d------~i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPD------GIEN--PKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEE------EEEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCC------cccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence 33467889999999875 23 35999999954 33321 0111 112349999998 6655554332
Q ss_pred --------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE--c--C-CcEEEEEeeC
Q 010801 291 --------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D--Y-MNLKLWDIRM 357 (501)
Q Consensus 291 --------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~--~--~-~~i~lwd~~~ 357 (501)
.|..|.+.+.... ...+++. .. .......+..++|+++|+.. + + ..+++.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~--d~lvfe~-~~----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSE--DELVFEE-PD----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG---EEEEC--TT----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHh--CeeEEee-cC----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3667776654321 1134444 11 01125678899999998753 2 3 4577778764
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.85 E-value=0.28 Score=41.43 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceEEEEEecCCCcEEEEE--eCCCeEEEEEcc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMR 298 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~--~~dg~i~~wd~~ 298 (501)
.++.+..++ .++.|+.|++. ..+.+.. ...|+ .++.....+..+ +.++++ |.|..++.|++.
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~-p~k~~g~-------~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIK-PNKVLGY-------VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeEEeccCCceeeeccc-cCceeee-------eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchh
Confidence 355566677 99999999998 3333332 23344 333333333333 445444 455555555554
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.85 E-value=0.38 Score=41.58 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=52.2
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
+..++ ++|++.+.+|.+++||+.+++.......+...-.... ... ......|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44556 7899999999999999999875543321111100000 000 0234678899999999888887778899998
Q ss_pred eeC
Q 010801 355 IRM 357 (501)
Q Consensus 355 ~~~ 357 (501)
...
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 763
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.80 E-value=9.5 Score=39.53 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=53.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCC----------CCe--eeeeeecCCCCC-CCcccceEEEEEecCC--CcE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEI----------SDQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL 282 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~-~~~~~~v~~v~~~p~~--~~~ 282 (501)
.-.|..+.++|+|.+++......|.|-.+.. ++. ..+++.+....+ ..+...|..+.|+|.+ +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3478889999999988876333444433321 011 122222222212 2345689999999974 368
Q ss_pred EEEEeCCCeEEEEEccCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~ 301 (501)
|++-+.|+++|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8889999999999997643
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=93.46 E-value=6.6 Score=36.65 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=68.4
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.-...++++.+.++++.++++..|.+.+=..+ .+...+..... .......+.++.+.|++ ..++ ++.+|.+..
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~~- 284 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWA-GGGNGTLLV- 284 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEE-EcCCCeEEE-
Confidence 34567889999999998888877776542233 33333211000 01122357888999876 6555 456675543
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEe
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~ 355 (501)
....++ .|.. ...+ .+-......+.|..+++.+++|..|.|--|+-
T Consensus 285 S~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred eCCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 333332 2221 0000 00123577888888888888888888877753
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=11 Score=38.02 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=52.8
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.|++++.. ++.+....-.|. .+-.+.|+.+..+|+...+|++++|++- +.. ..... ...+.....|..+.
T Consensus 65 ~I~If~~s----G~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~-ie~~s---vg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 65 YIRIFNIS----GQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL-GEF-IESNS---VGFESQMSDIVECR 134 (829)
T ss_pred eEEEEecc----ccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc-hhh-hcccc---cccccccCceeEEE
Confidence 46666655 334443323343 7888999988877777799999999987 332 21100 01233344566666
Q ss_pred EecCCCcEEEEEeCCCeEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~w 295 (501)
+..+| +++-..+|.+.+-
T Consensus 135 ~f~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 135 FFHNG---VAVLTVSGQVILI 152 (829)
T ss_pred EecCc---eEEEecCCcEEEE
Confidence 66677 5555566666554
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=1.9 Score=45.27 Aligned_cols=103 Identities=10% Similarity=-0.026 Sum_probs=66.8
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
....++.|+|.-..- +.+ .|+.|++..+....+... -.......++++|+|.| +.++.|...|++.-|-
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~--------s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT--------SFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYE 226 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhc--------ccCcccceeeEEecccc-ceeeEecCCCeEEEee
Confidence 345577888764433 345 899999887763333222 12345678999999999 9999999999998886
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
..-... +.+.. ++... ...|.+++|-....++++
T Consensus 227 P~leik-----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 227 PSLEIK-----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccccee-----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence 543211 11111 11000 357999999988888775
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.81 E-value=0.2 Score=50.63 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=55.2
Q ss_pred cceEEEeccCceeee----eeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 194 MATKIANVGNSVHAR----CQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
|.+.+|+++.- .++ ..-.........+.-+.|.| +.-++..+ ++++|++.+.+...+ .+ +.+
T Consensus 153 g~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rs 222 (1283)
T KOG1916|consen 153 GELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRS 222 (1283)
T ss_pred hhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHh
Confidence 45667877652 221 11111123334445555544 55667777 888988877663222 21 333
Q ss_pred cccceEEEE-----------EecCCCcEEEEEeCCCeEEEEEcc
Q 010801 266 LTEVITSAE-----------FHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 266 ~~~~v~~v~-----------~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
|...+..++ .+||| ..|+.++.||.++.|-+.
T Consensus 223 Hs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 554444433 57898 999999999999888664
No 412
>PHA02713 hypothetical protein; Provisional
Probab=92.65 E-value=13 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.0
Q ss_pred CCcEEEEEeCCC--eEEEEecCCCCc
Q 010801 395 DGLHFATGSYSN--LLRIFSHGVGSA 418 (501)
Q Consensus 395 ~~~~l~s~~~dg--~i~iwd~~~~~~ 418 (501)
++++.+.|+.|| .+..||..+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 788899999888 677788777643
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.56 E-value=6.1 Score=33.83 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=62.3
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEE--ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~ 347 (501)
+.++|+.+...+.++-+.+-.|.-|| ..++....+. .+++..+..+.. .-.-..++..-+|++.++. +.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~-~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK-VIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc-eeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecC
Confidence 57889988744555667788887787 6666443221 233331111110 0122344455577776666 44
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
++|...|..+ ++.+.++.-....+ +++||--.
T Consensus 233 ~~V~~~dp~t-GK~L~eiklPt~qi---------------tsccFgGk 264 (310)
T KOG4499|consen 233 GTVQKVDPTT-GKILLEIKLPTPQI---------------TSCCFGGK 264 (310)
T ss_pred cEEEEECCCC-CcEEEEEEcCCCce---------------EEEEecCC
Confidence 9999999987 99998888665544 78888643
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.41 E-value=11 Score=36.33 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=62.4
Q ss_pred EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 234 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
+.| ++..|.-.|.+..+..+.....+ ... ......+..-..+ .+++.++..|-|++||.-.-+.. ..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta--- 598 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA--- 598 (776)
T ss_pred EEeecccceEEecccccCCceeeeeeh--hcc-ccccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence 446 77777777777555444332111 111 1122233333333 48999999999999995432211 11
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++....|..+..+.+|+++++.....+-+-|++
T Consensus 599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1233568999999999999988777888888875
No 415
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.27 E-value=8.4 Score=32.71 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeC-CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---C-
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---N- 406 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g- 406 (501)
.+.-.+.+.++++.....|.+|++.. ..+++.+|..-... ..+.++..|.+|+|-=.+ .
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V----------------~~l~y~~~GDYlvTlE~k~~~~~ 85 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRV----------------LQLVYSEAGDYLVTLEEKNKRSP 85 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhhe----------------eEEEeccccceEEEEEeecCCcc
Confidence 33333323344444558899999972 34556666644322 689999999999976442 2
Q ss_pred --eEEEE---ecC--CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEE
Q 010801 407 --LLRIF---SHG--VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 479 (501)
Q Consensus 407 --~i~iw---d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~ 479 (501)
.+|+| ... ........+-+|... ++.... ...+........+.++.++
T Consensus 86 ~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~----------------------~~~~~~---~~~qleiiElPl~~~p~ci 140 (215)
T PF14761_consen 86 VDFVRAYFNWRSQKEENSPVRVRIAGHRVT----------------------PSFNES---SKDQLEIIELPLSEPPLCI 140 (215)
T ss_pred ceEEEEEEEhhhhcccCCcEEEEEcccccc----------------------cCCCCc---cccceEEEEecCCCCCCEE
Confidence 45664 322 111111122222110 000000 0000111122345678899
Q ss_pred EEccCCCEEEEeeCCeEEEEe
Q 010801 480 AWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.+|-..-|++|+++.+.+|.
T Consensus 141 aCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 141 ACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EecCCCCCEEEEcCCEEEEEE
Confidence 999998889999999999986
No 416
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.27 E-value=19 Score=36.87 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=89.3
Q ss_pred CCEEEEEcCCeEEEEECCCCCeeee-----eeecCCCCCC---------CcccceEEEEEecCC-CcEEEEEeCCCeEEE
Q 010801 230 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL 294 (501)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~v~~v~~~p~~-~~~l~~~~~dg~i~~ 294 (501)
..+++.|..+.|.||+.+.-.+... .+..++.... .....|+.+....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6688888889999999874332111 1111111000 011234555444322 268899999999999
Q ss_pred EEccCCcccccccceeeccccc----CCCcc-eeeecccceeEEEEe--eCCCEEEEEcC-CcEEEEEeeCCCCceeEee
Q 010801 295 VDMRQSALCDHSARILRDAAES----HGSKS-FFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~h~~~i~~~~~s--p~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 366 (501)
|.+..--... ......... ..... +........++++++ ...++||+++. ..|.||-............
T Consensus 129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEHHHHHHHH---HhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9774310000 000000000 00000 112234688999999 78888988876 7788876653111111100
Q ss_pred --ccccccccccccCCCCCcceeeEEEEcCCC---c---EEEEEeCCCeEEEEec
Q 010801 367 --IHEHLRPKLCDLYNNDSIFDKFECSVSGDG---L---HFATGSYSNLLRIFSH 413 (501)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~---~l~s~~~dg~i~iwd~ 413 (501)
.+...+ -+++|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 112222 367776643 2 7888999999999888
No 417
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=19 Score=39.00 Aligned_cols=174 Identities=12% Similarity=0.120 Sum_probs=88.6
Q ss_pred EEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--------ecCCCcEEEEEeCCCeEE
Q 010801 222 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~~l~~~~~dg~i~ 293 (501)
..+-+-|.=...-..-|+.+.+|+.++++.... +.+....|..|.. .|.= +++++...--.|.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~--------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ 152 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAE--------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV 152 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCcccc--------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence 344455554444455688999999996444322 3444444544432 2332 3344444444566
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCC------CCceeEee-
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD------STPVATFK- 366 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~------~~~~~~~~- 366 (501)
++-+.-.+..... ..+..+ -.+.-....|+++....+|+.+.+|.|| .+|.+... ++.-..+.
T Consensus 153 ilgV~~~~~~~~~-~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 153 ILGVSFDEFTGEL-SIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EEEEEeccccCcc-cccccc-------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccC
Confidence 6544322211100 111110 0001113578899988999999999888 55554321 00000000
Q ss_pred ---ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 367 ---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.....++.+..+. .....++..+.....-..|.+-+..|+|.+|++..
T Consensus 223 t~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhHHHHhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0000111111111 01111236888887777888999999999999987
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.01 E-value=1.3 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=25.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK 150 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~ 150 (501)
.++..+. .++.++++.+.+|.+++||+.+++..
T Consensus 13 s~~~~l~----~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 13 SPVSFLE----CNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CceEEEE----eCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4455555 46789999999999999999987753
No 419
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.00 E-value=1.4 Score=41.38 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=82.7
Q ss_pred ccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee-EEEEcCCCcEEEEEeCC
Q 010801 327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSYS 405 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~s~~~d 405 (501)
...+..+-..|||+.+..-+..++.++++.+ +.+..-+--+.. .++....|+ .+..-..|.-|..++.|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~ds--------pg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDS--------PGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcC--------CCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3568888999999999877668899999874 222111111100 000110011 12222356668889999
Q ss_pred CeEEEE-ecCCCCcc-eEE---EecccCcccceeeccCCccccCccceeeeecccce-eec-cccCCcccccccCCCeEE
Q 010801 406 NLLRIF-SHGVGSAG-GIT---VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLH 478 (501)
Q Consensus 406 g~i~iw-d~~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw-~~~~~~~~~~~~~~~i~~ 478 (501)
|.|.-| |+..+... ... ++-...++ -...|..+.+- +++-...|. .++ ++.+........-+.+..
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~--~~l~pe~~rkg-----F~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~ 362 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEV--QFLLPETNRKG-----FYSLYRNGTLQSFYSTSEKLLLFERAYQAPQL 362 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccc--eeeccccccce-----EEEEcCCCceeeeecccCcceehhhhhcCcce
Confidence 999887 44332111 111 11111111 11222222222 455555555 555 333222222222235667
Q ss_pred EEEccCCCEEEEeeCCeEEEEe
Q 010801 479 LAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+++||.+++|++-..+++.++.
T Consensus 363 ~~~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 363 VAMSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eeeCcccchheeecCCceEEEE
Confidence 8999999999998888887764
No 420
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.91 E-value=11 Score=33.36 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=56.9
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
+.++ .+++.|+.+ ....++.+|..+-. ..+.+.+.. -...-..++.+.|. +| .+.|=.-....|...|..+|
T Consensus 133 WGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~--~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 133 WGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTD--NGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EE--TTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-
T ss_pred eEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEE--CCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCC
Confidence 4455 467777777 77899999987433 333332221 11122356677776 55 66666666777888888887
Q ss_pred cccccccceeecccccC---CCcceeeecccceeEEEEeeCCC-EEEEEc
Q 010801 301 ALCDHSARILRDAAESH---GSKSFFTEIIASISDIKFANDGQ-HLLSRD 346 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~ 346 (501)
... ..++...-.+ ..... ..-..-.+.+++.|..+ ++++|-
T Consensus 206 ~V~----~~iDls~L~~~~~~~~~~-~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 206 KVV----GWIDLSGLRPEVGRDKSR-QPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp BEE----EEEE-HHHHHHHTSTTST---TTS-EEEEEEETTTTEEEEEET
T ss_pred eEE----EEEEhhHhhhcccccccc-cccCCeeEeEeEeCCCCEEEEEeC
Confidence 654 2221100000 00000 00134588999998765 555663
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=21 Score=36.35 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecc
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
..+..+..||+.++|+-=++ |.|.+-+.+. .+.+..+...
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~ 257 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCT 257 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCC
Confidence 56889999999999987654 9999988875 6666666533
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=6.1 Score=37.33 Aligned_cols=119 Identities=10% Similarity=0.197 Sum_probs=74.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
++|.+|+|+ +|.+.++.--.|++|.+++....+.......
T Consensus 67 G~I~SIkFS--lDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-------------------------------------- 106 (657)
T KOG2377|consen 67 GEIKSIKFS--LDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-------------------------------------- 106 (657)
T ss_pred CceeEEEec--cCcceEEEEecCceEEEEecCCCchhhHHHH--------------------------------------
Confidence 889999998 7889999999999999998854332211100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+| ......|....|+.+ .-++.-.+..+.+|......+.++. .+.|...|.-.
T Consensus 107 --------------~c-----k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy 159 (657)
T KOG2377|consen 107 --------------EC-----KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWY 159 (657)
T ss_pred --------------Hh-----ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEE
Confidence 00 222445777888765 4455445556777776644555543 45677788888
Q ss_pred EEecCCCcEEEEEe--CCCeEEEEEccCC
Q 010801 274 EFHPIYCNLLAYSS--SRGFVRLVDMRQS 300 (501)
Q Consensus 274 ~~~p~~~~~l~~~~--~dg~i~~wd~~~~ 300 (501)
.|.++- +.++.++ ..+.+.=+-++++
T Consensus 160 ~yc~et-~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 160 MYCPET-AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEcccc-ceEeeeccccccccccEEEeec
Confidence 888887 6444333 2344444444443
No 423
>PHA02713 hypothetical protein; Provisional
Probab=90.51 E-value=6.1 Score=39.90 Aligned_cols=23 Identities=0% Similarity=-0.025 Sum_probs=17.5
Q ss_pred CCCcEEEEEeCCC--eEEEEEccCCc
Q 010801 278 IYCNLLAYSSSRG--FVRLVDMRQSA 301 (501)
Q Consensus 278 ~~~~~l~~~~~dg--~i~~wd~~~~~ 301 (501)
++ ++.++|+.+| .+..||..+.+
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 45 8899999888 67777777653
No 424
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.42 E-value=18 Score=35.12 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=25.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
+..+.|+|.|||++|++--..|+|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 56789999999988776544699999975544
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.36 E-value=12 Score=33.05 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=92.6
Q ss_pred eeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE
Q 010801 209 CQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 209 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 285 (501)
.+..+..........+.|..+|.++-+. . ...|+.+|+.+ ++......+... ..--.++...+ ++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~------~FgEGit~~~d--~l~qL 105 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPR------YFGEGITILGD--KLYQL 105 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--------EEEEEEETT--EEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCcc------ccceeEEEECC--EEEEE
Confidence 3444422233344578887778777664 3 45899999994 444443332211 11234444433 56666
Q ss_pred EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeE
Q 010801 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 286 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~ 364 (501)
.-.++...+||..+-+.. ..+.- .+.=+.++ .|++.|+..+ ...|+++|..+ .+....
T Consensus 106 TWk~~~~f~yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~ 164 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRT 164 (264)
T ss_dssp ESSSSEEEEEETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEE
T ss_pred EecCCeEEEEccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEE
Confidence 677899999999876543 23322 12334555 5677666654 38899999875 666666
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+.......+ +..++.+.|- +|...|-.-....|..-|..+|.
T Consensus 165 i~V~~~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 165 IQVTDNGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EE-EETTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred EEEEECCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 655433221 1112567775 67777766667777778888883
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.29 E-value=22 Score=35.97 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=18.2
Q ss_pred CCcEEEEEeCCCe-----EEEEecCCCCcc
Q 010801 395 DGLHFATGSYSNL-----LRIFSHGVGSAG 419 (501)
Q Consensus 395 ~~~~l~s~~~dg~-----i~iwd~~~~~~~ 419 (501)
++.+.+.||.|+. |..||..+.+..
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 6778888888763 677888776443
No 427
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.08 E-value=23 Score=35.85 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=20.3
Q ss_pred eeEEEEeecCCCCEEEEeeCC------CeEEEEecccccee
Q 010801 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVK 150 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d------~~i~lw~~~~~~~~ 150 (501)
-.+++.. ++..+++|+.| .++..||...++..
T Consensus 325 ~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 325 RVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred cccEEEE---CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3445553 56788888888 34556676666533
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.81 E-value=17 Score=33.89 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=39.0
Q ss_pred cccceeEEEEeeC-------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 326 IIASISDIKFAND-------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 326 h~~~i~~~~~sp~-------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
+...+..+.|... |.++++.- .+.|....+...++ +......-... -..+..+++.|||.
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~-----------~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-VTEEEEFLGGF-----------GGRPRDVAQGPDGA 318 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEEEECTTS-----------SS-EEEEEEETTSE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC-ccceEEccccC-----------CCCceEEEEcCCCe
Confidence 3356777877753 44555553 36777777764222 21111100000 00126899999999
Q ss_pred EEEEEeCCCeEE
Q 010801 398 HFATGSYSNLLR 409 (501)
Q Consensus 398 ~l~s~~~dg~i~ 409 (501)
++++-+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 998888888874
No 429
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.46 E-value=7.5 Score=36.79 Aligned_cols=97 Identities=8% Similarity=-0.068 Sum_probs=63.0
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccceeecccc-
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS- 463 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~- 463 (501)
.++.||+|.+.||.--.|.+|.+++....... ..+-+.....|-..+|... +- +|.....|..++...
T Consensus 70 ~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s---~e-----~A~i~~~G~e~y~v~p 141 (657)
T KOG2377|consen 70 KSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS---TE-----IAFITDQGIEFYQVLP 141 (657)
T ss_pred eEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC---ee-----EEEEecCCeEEEEEch
Confidence 79999999999999999999999998543222 1222233333555555543 22 566666666666322
Q ss_pred --CCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 464 --GHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 464 --~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
..+.....+...|+-..|+|+.+.+.-++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22333345677888999999988755444
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.35 E-value=18 Score=33.60 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=89.3
Q ss_pred ccceEEEEecC-CCCEEEEEcCCe------EEEEECCCCC---eeee---eeecCCC---CCCCcccceEEEEEecCCCc
Q 010801 218 DFNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFN---IVDMKPS---NMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 218 ~~~v~~l~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~---~~~~~~~---~~~~~~~~v~~v~~~p~~~~ 281 (501)
-+.+..|.+.+ ++.+++.++++. +..+++.... ..+. .+.++.. .+..-....-++++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 35677888885 454555557666 6656555311 1111 1111100 111111134478887777 7
Q ss_pred EEEEEeCC------CeEEEEEccCCcccccccceeeccc-ccCCCc-ceeeecccceeEEEEeeCCCEEEEEc------C
Q 010801 282 LLAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------Y 347 (501)
Q Consensus 282 ~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~h~~~i~~~~~sp~~~~l~~~~------~ 347 (501)
++++.-.+ ..|..++.. ++.. ..+.... ..+... ..-...+..+-+++++|+|+.|.+.. |
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence 77776667 778888866 4432 1111100 000000 00112356899999999999555431 2
Q ss_pred C--c-------EEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-----CCCeEEEE
Q 010801 348 M--N-------LKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIF 411 (501)
Q Consensus 348 ~--~-------i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~iw 411 (501)
+ . ++++.... .+.+...+......+.. ......+..+.+-+++++|+-=- ....++|+
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~ 246 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIY 246 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEEEccCCCCccceEEEE
Confidence 1 2 55655542 13333433322221100 00112236888889998776322 23455565
Q ss_pred ecC
Q 010801 412 SHG 414 (501)
Q Consensus 412 d~~ 414 (501)
.+.
T Consensus 247 ~v~ 249 (326)
T PF13449_consen 247 RVD 249 (326)
T ss_pred EEE
Confidence 544
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.31 E-value=15 Score=32.48 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=92.3
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
+....-..+..-|||...++-....|.-.|-++. .++.+.+. .+.-........|.+.| ++..++.. |.---.
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~lp---~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrL 173 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFPLP---LEHADANLETAVFDPWG-NLWFTGQI-GAYGRL 173 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcceeEEecCccc--ceEEeecc---cccCCCcccceeeCCCc-cEEEeecc-ccceec
Confidence 3344445566778887666542224444444311 22222111 23334567788899999 88887653 111111
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeecccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
|...+. +++|.. + ....-..|+..|||..-++. .++.|-..|... + .-..+........
T Consensus 174 dPa~~~-----i~vfpa-P-----------qG~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~- 233 (353)
T COG4257 174 DPARNV-----ISVFPA-P-----------QGGGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKA- 233 (353)
T ss_pred CcccCc-----eeeecc-C-----------CCCCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCcccc-
Confidence 111111 123322 1 02356788899999876664 235666666543 2 2222222211000
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+...+.-+|.|+.-++-...+.+.-+|-.+.......+.+.+.
T Consensus 234 -----------gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 234 -----------GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred -----------cccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence 0045667788888888888888888888776555455544443
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=7.7 Score=37.40 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=54.2
Q ss_pred CcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccc
Q 010801 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS 462 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~ 462 (501)
..+.|..+..++.|..++-.|.+|.+.++=-+.- -....++..+..|.|..+... .++ .+.+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw-G~~s~~eDgk~~v~CRt~~i~--~~~------ftss--------- 163 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRW-GKNSEFEDGKSTVNCRTTPVA--ERF------FTSS--------- 163 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhc-CccceecCCCceEEEEeeccc--cee------eccC---------
Confidence 3346678889999999999999997765432111 112344445555666655542 211 1110
Q ss_pred cCCcccccccCCCeEEEEEccCC---CE-EEEeeCCeEEEEe
Q 010801 463 SGHHELSYNLSSKLLHLAWHPTT---NL-IACANGNSLFFHY 500 (501)
Q Consensus 463 ~~~~~~~~~~~~~i~~~~~sp~~---~~-la~~~~~~~~i~~ 500 (501)
..-.+...+|||+. .. ++-.+++.+++|+
T Consensus 164 ---------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ---------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ---------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 11256789999986 34 4455577788886
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=6.4 Score=42.38 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=54.7
Q ss_pred cccceEEEEecCCCCEEEEEcCCeEEEEECCCC-----CeeeeeeecC----------CCCCC-CcccceEEEEEecCCC
Q 010801 217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS-----DQCFNIVDMK----------PSNMD-DLTEVITSAEFHPIYC 280 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~----------~~~~~-~~~~~v~~v~~~p~~~ 280 (501)
....|.++....+|+.+.+|.||.|+-.-.... +++.++ .+. ..++. .+..+|..++....-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Ki-clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKI-CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccc-cCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 356788999889999999996664432211110 111111 000 01233 567799999999886
Q ss_pred cEEEEEeCCCeEEEEEccCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~ 300 (501)
+++.+-++.|.|.+||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 89999999999999999873
No 434
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.37 E-value=24 Score=33.76 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=67.0
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+..+.+.+++..++++.+|.+..-+-. ++..................+.++.|.+++ ..+ .++..|.+...
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~--G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~~-a~G~~G~v~~s 353 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLTRGGGLYVSKGT--GLTEEDFDFEEADIKSRGFGILDVGYRSKK-EAW-AAGGSGILLRS 353 (398)
T ss_pred CCccceeeeeEcCCCCEEEEeCCceEEEecCC--CCcccccceeecccCCCCcceEEEEEcCCC-cEE-EEECCCcEEEe
Confidence 33456788999999999988877775543222 221100000000111122458889999886 554 45667766554
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
. ..++ .|+. .... .+-...+..+.|.++++.+++|.+|.|.-|
T Consensus 354 ~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 354 T-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred C-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 3 3332 2221 0000 011246789999988999999988877654
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.84 E-value=26 Score=33.53 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=81.9
Q ss_pred eEEEEecCCCCEEEEEcCCeEE-EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
...+..++++.+++.+..|.+. -||-. ......+ -......+.++.+.+++ .+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 4455667888888888555433 34432 1111111 11224567899999988 766654 5665443 3223
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
+.... ...+..-.. ..-...+.++.|.+++..+++|..|.+....- .++.-...........
T Consensus 310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------ 371 (398)
T PLN00033 310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------ 371 (398)
T ss_pred CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence 21100 001111000 00013588999999999999998887766542 3554444331111100
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
. .+.+.|.++++.+++| .+|.|.-|
T Consensus 372 ---~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 372 ---N---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ---c---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1 1588988777666554 56776554
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.73 E-value=11 Score=29.21 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=67.1
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccc----cccceeecccccCCCcceeeecccceeEEEEee-----CCCEE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHL 342 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~~~l 342 (501)
.-.|.... ..|+.++.-|.|.|++........ ..++.+.. ...|++++-.+ +...|
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEE
Confidence 34566666 678888899999999876543211 11222222 45677776554 34678
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE---cCCCcEEEEEeCCCeEEEEecCCC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+.|+...+..||+.. ...+..-..+++. .++.+ .....-|+..+.+..|.-||.+..
T Consensus 68 liGt~t~llaYDV~~-N~d~Fyke~~DGv----------------n~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 68 LIGTQTSLLAYDVEN-NSDLFYKEVPDGV----------------NAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EEeccceEEEEEccc-CchhhhhhCccce----------------eEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 889889999999985 4444333333332 34443 222233444555577888876533
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.46 E-value=10 Score=36.27 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=32.0
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
......+.+++.+|++++.++. .-|.|.++|+. ....+++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrm 344 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRM 344 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhh
Confidence 4555678899999999888888 78999999999 5555554
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.24 E-value=0.075 Score=49.80 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~ 347 (501)
.-...|.|.+ .-++.++.+..+..||-.... ..+. . .++....++|.-++..++.. . .
T Consensus 37 pi~~~w~~e~-~nlavaca~tiv~~YD~agq~-------~le~-n-----------~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 37 PIIHRWRPEG-HNLAVACANTIVIYYDKAGQV-------ILEL-N-----------PTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred cceeeEecCC-CceehhhhhhHHHhhhhhcce-------eccc-C-----------CchhHhhhhhccccchhhhhhhcC
Confidence 3456788888 558888888899999865532 1221 0 12456778888888766643 3 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.+++||+.++....-.+.+.... .-+.|++....++.|...|.+.|++..+.+.. .....|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhhh-hhhcccc
Confidence 999999997522211122221111 13789999999999999999999998766332 1222244
Q ss_pred Ccccceeecc
Q 010801 428 NENRKPILQA 437 (501)
Q Consensus 428 ~~v~~~~~~~ 437 (501)
..+.+.++.+
T Consensus 160 RRgtq~av~l 169 (615)
T KOG2247|consen 160 RRGTQIAVTL 169 (615)
T ss_pred cceeEEEecc
Confidence 4444444444
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.05 E-value=23 Score=32.15 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC----cE-EEEEeCCCeEEEEEccCCcccccccceeeccc
Q 010801 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (501)
Q Consensus 240 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 314 (501)
.|.+||+. ..+.++.+.+...... ....+..+.+....+ .+ .++=+..+.|.++|+.+++.. ++... .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence 68889999 4557777666544444 456778888876321 23 333334568999999998653 22222 2
Q ss_pred ccCCCc-cee------eecccceeEEEEee---CCCEEEEEcCCcEEEEEeeCC----CC---------ceeEeeccccc
Q 010801 315 ESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMD----ST---------PVATFKIHEHL 371 (501)
Q Consensus 315 ~~~~~~-~~~------~~h~~~i~~~~~sp---~~~~l~~~~~~~i~lwd~~~~----~~---------~~~~~~~~~~~ 371 (501)
..+.+. ..+ -.....+..++.+| ++++|.-..-..-++|.+.+. .. .++.+ +....
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~ 186 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS 186 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC
Confidence 222211 100 11223477788876 677777654344455555430 00 01111 11110
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
. ...++.+++|.++++--..+.|..|+...
T Consensus 187 ~--------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 Q--------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp S--------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred C--------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 0 04789999999999999999999999876
No 440
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.77 E-value=37 Score=34.10 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeeec
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIKE 154 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~~ 154 (501)
+..++.++.|+.+.-.|..+|+......
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3467778889999999999998876553
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.55 E-value=5.4 Score=33.06 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=26.0
Q ss_pred ceEEEEEecCC-----CcEEEEEeCCCeEEEEEccCC
Q 010801 269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 269 ~v~~v~~~p~~-----~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+..++|+|.| .-+|++.+.++.|.+|.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78999999965 237899999999999986643
No 442
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.43 E-value=29 Score=31.70 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010801 228 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (501)
Q Consensus 228 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 307 (501)
.++..++++..|.| |.....++..+.+ .......+..+.-+++| .+++++..-....-||--.
T Consensus 113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~-------- 175 (302)
T PF14870_consen 113 GDGSAELAGDRGAI--YRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ-------- 175 (302)
T ss_dssp ETTEEEEEETT--E--EEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred CCCcEEEEcCCCcE--EEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence 34444444544443 3333345444432 23344678888889998 8888776555556676543
Q ss_pred ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
..+..|... -...|.+|.|.|++.+.+.+..+.|++=+.. ....++..+...+.. .-+.+
T Consensus 176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~~--------~~~~~ 235 (302)
T PF14870_consen 176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIKT--------NGYGI 235 (302)
T ss_dssp SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTSS----------S-E
T ss_pred ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCccc--------Cceee
Confidence 223332111 1357999999999988777766888887621 122233221111100 01122
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..++|.+++...++|+. |.+ +...+.|
T Consensus 236 ld~a~~~~~~~wa~gg~-G~l-~~S~DgG 262 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGS-GTL-LVSTDGG 262 (302)
T ss_dssp EEEEESSSS-EEEEEST-T-E-EEESSTT
T ss_pred EEEEecCCCCEEEEeCC-ccE-EEeCCCC
Confidence 68999999887776655 444 3455555
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.07 E-value=2.5 Score=43.36 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=46.9
Q ss_pred eeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
|..+-|-++.-++..+.+ +.|++....+ .....+.+|...+.....+...-. .--..||||+.++....||.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~----~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVL----KLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchh----hheeeCCCCcEEEEeecCCcc
Confidence 333334445666666754 8888887753 223445556654422211111111 113489999999999999999
Q ss_pred EEEecC
Q 010801 409 RIFSHG 414 (501)
Q Consensus 409 ~iwd~~ 414 (501)
+.|.+-
T Consensus 260 ~f~Qiy 265 (1283)
T KOG1916|consen 260 GFYQIY 265 (1283)
T ss_pred ceeeee
Confidence 998763
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.63 E-value=4 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.8
Q ss_pred eCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccc
Q 010801 337 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 337 p~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|++++|.++. ++.|.++|..+ .+.+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5777777653 49999999975 7777777654333
No 445
>PHA03098 kelch-like protein; Provisional
Probab=84.53 E-value=48 Score=33.42 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCC
Q 010801 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~~~d-----g~i~iwd~~~~ 416 (501)
++++++.|+.+ ..|.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 67777777764 46788887765
No 446
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.45 E-value=11 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.5
Q ss_pred eeeEEEEcCCC------cEEEEEeCCCeEEEEecCC
Q 010801 386 DKFECSVSGDG------LHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 386 ~~~~~~~s~~~------~~l~s~~~dg~i~iwd~~~ 415 (501)
.+..++|||.| .+|++-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34789999953 4788999999999998764
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.98 E-value=0.18 Score=47.35 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=65.3
Q ss_pred cceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....++|..++..++. + ..+.+.+||+++.. ..+. .+. .|... -+.|++.. ..++.+...|.+.++
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL------E~gg~~s~s--ll~wsKg~-~el~ig~~~gn~viy 144 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL------ESGGTSSKS--LLAWSKGT-PELVIGNNAGNIVIY 144 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH------hccCcchHH--HHhhccCC-ccccccccccceEEE
Confidence 34456778777777665 5 88999999998432 1111 111 22222 26788887 888888899999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+..+.+... ... .|...+..+++.+.+..+..
T Consensus 145 nhgtsR~ii----v~G-------------kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 145 NHGTSRRII----VMG-------------KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred eccchhhhh----hhc-------------ccccceeEEEecccceeeec
Confidence 988765321 111 15567889999887765554
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=83.91 E-value=37 Score=31.69 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=61.5
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...+.++.+.|++ .++++ +..|.+..- .+.+. +.|..... .-...+.++.+.++++.++++.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg------~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQ------TAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCC------CeEEEeeC---------CCcccceeeeEcCCCCEEEEec
Confidence 4568889999987 65554 455654431 11111 12222100 0135789999999999888887
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|.+++=..+ .+..-.....+... .-+.+..+.+.+++..+++| .+|.|. ...+.+
T Consensus 234 ~G~~~~~s~d-~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G 289 (334)
T PRK13684 234 GGQIRFNDPD-DLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG 289 (334)
T ss_pred CCEEEEccCC-CCCccccccCCccc-----------cccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC
Confidence 6766532222 23322222111000 00011578899888765544 566554 344444
No 449
>PRK10115 protease 2; Provisional
Probab=83.78 E-value=60 Score=33.93 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=25.1
Q ss_pred cceEEEEEccCCCEEEEEe-----cCCcEEEEEecCCc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGK 65 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-----~dg~i~iw~~~~~~ 65 (501)
-.+..+.+||||++||.+. +..+|++.|+.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 4577889999999998753 33468888888775
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.73 E-value=4.1 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCeEEEEEccCCCEEEEee
Q 010801 474 SKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 474 ~~i~~~~~sp~~~~la~~~ 492 (501)
..-...+|||||+.|+.++
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3556889999999999877
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.46 E-value=37 Score=32.98 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=80.6
Q ss_pred EeeCCCEEEE-EcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC--------cEEEEEeC
Q 010801 335 FANDGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--------LHFATGSY 404 (501)
Q Consensus 335 ~sp~~~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------~~l~s~~~ 404 (501)
...|..+|.. |.. ..++-.|+.. ++.+.++..+...+ +.|.|+. +.|+.-|.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddvv-----------------Vqy~p~~kf~qmt~eqtlvGlS~ 536 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDVV-----------------VQYNPYFKFQQMTDEQTLVGLSD 536 (776)
T ss_pred ecCCcceEEecCCCcccceeeeccc-ceeeeEeecCCcce-----------------eecCCchhHHhcCccceEEeecc
Confidence 3345556554 333 7888889986 99999999888753 6666643 34554444
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccC---CccccCccceeeeecccce-eec-cccCC-cccccccCCCeEE
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA---PRARRSSLSNLTRGLYRQA-HEN-SSSGH-HELSYNLSSKLLH 478 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~l~~~~~~~~-~iw-~~~~~-~~~~~~~~~~i~~ 478 (501)
.+..+| |..-..... .....+.-...-.|+.. .+| + +|.++..|- +++ ..+.. ...+.++...|..
T Consensus 537 ~svFrI-DPR~~gNKi-~v~esKdY~tKn~Fss~~tTesG-y-----Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 537 YSVFRI-DPRARGNKI-KVVESKDYKTKNKFSSGMTTESG-Y-----IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH 608 (776)
T ss_pred cceEEe-cccccCCce-eeeeehhccccccccccccccCc-e-----EEEecCCCceeeehhhcchhhhcCcccccceee
Confidence 443333 433221111 11111111112222211 122 2 788888888 898 34432 2335577889999
Q ss_pred EEEccCCCEEEEeeCCeEEE
Q 010801 479 LAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~~~~i 498 (501)
+..+.+|++|.+.|.+.+.+
T Consensus 609 idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 609 IDVTANGKHILATCKNYLLL 628 (776)
T ss_pred eEeecCCcEEEEeecceEEE
Confidence 99999999999888776544
No 452
>PHA03098 kelch-like protein; Provisional
Probab=83.03 E-value=55 Score=32.98 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=14.2
Q ss_pred CCCcEEEEEeCC--------CeEEEEEccCC
Q 010801 278 IYCNLLAYSSSR--------GFVRLVDMRQS 300 (501)
Q Consensus 278 ~~~~~l~~~~~d--------g~i~~wd~~~~ 300 (501)
++ .+++.|+.+ ..+.+||..++
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCC
Confidence 44 677777643 23788888765
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.97 E-value=4 Score=38.45 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=86.2
Q ss_pred CCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeee-eeeecCCCCCCC-cccceE-EEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~-~~~~v~-~v~~~p~~~~~l~~~~~dg~ 291 (501)
..-...|..+-..|||+.+..-...++.++++.+..-.. +..+.. ++ ....|+ .+..-.-| .-|++++.||.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCc
Confidence 344556777888999999988755889999887322111 111000 11 001111 11112233 66888899999
Q ss_pred EEEE-EccCCcc-cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc
Q 010801 292 VRLV-DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 i~~w-d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.-| |.+.+.. ...+++.++. ....+..+.-..+.+-+++-. .|++.++.... .+++-.-..-
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l-------------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~ 357 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKL-------------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAY 357 (733)
T ss_pred eeeeeeeecCCCCcceeeecccc-------------CcccceeeccccccceEEEEcCCCceeeeeccc-Ccceehhhhh
Confidence 8877 5554321 1122222222 012222222112223333333 36777666543 3332211111
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+.. .-+++||++.+|++-. .|.|+++.+++.
T Consensus 358 ~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 358 QAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred cCc----------------ceeeeCcccchheeec-CCceEEEEecCC
Confidence 111 3589999999988654 478999999876
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.38 E-value=23 Score=27.54 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=50.1
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
..-.|.....-|+.++.-|.|.|++....... ..+ .-..++.+.+...
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~ 49 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQE 49 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCc
Confidence 44567777778999999999999997754321 000 0012233444477
Q ss_pred eeEEEEee---cCCCCEEEEeeCCCeEEEEeccccc
Q 010801 116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQK 148 (501)
Q Consensus 116 V~~v~~~~---~~~~~~l~s~s~d~~i~lw~~~~~~ 148 (501)
|++|+--+ ..+...|+.|+. ..+..||+....
T Consensus 50 italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 50 ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred eEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 88886543 234456666664 579999998765
No 455
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.26 E-value=5.7 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=19.9
Q ss_pred cccceEEEEEccCCCEEEEEec-C--CcEEEE
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF 59 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~-d--g~i~iw 59 (501)
....-....|||||++|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999999887663 3 555554
No 456
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.99 E-value=39 Score=29.22 Aligned_cols=98 Identities=5% Similarity=0.067 Sum_probs=61.2
Q ss_pred ceeEEEEeeCCCEEEEEc--CCcEEEEE--eeCC----CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 329 SISDIKFANDGQHLLSRD--YMNLKLWD--IRMD----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~~~i~lwd--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
--+.++|+.+.+.+..-+ +-.|.-|| ..+. .+.+..++-.....+ .+. -.++...+|.+.+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~---------~~P--DGm~ID~eG~L~V 227 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES---------LEP--DGMTIDTEGNLYV 227 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC---------CCC--CcceEccCCcEEE
Confidence 346788888887766543 35666677 3321 122222221110000 000 2566777899888
Q ss_pred EEeCCCeEEEEecCCCCcceEEEecccCcccceeeccC
Q 010801 401 TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 438 (501)
+.-..++|.-.|..+|+. ..+++-....+++.+|--.
T Consensus 228 a~~ng~~V~~~dp~tGK~-L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKI-LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEecCcEEEEECCCCCcE-EEEEEcCCCceEEEEecCC
Confidence 888889999999999954 4777777888888888653
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.61 E-value=53 Score=30.56 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=63.7
Q ss_pred cceEEEEEecCCCcEEEEEeCCCe------EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGF------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+..+.+.|++ ..+++.+.+|. +..+++.................-....-..+..-....-++++.++|.+
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456888999765 55666677777 55555544110000001000000000000001111124567888788888
Q ss_pred EEEEc-C------CcEEEEEeeCCCCceeEeeccccccccc---cccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 342 LLSRD-Y------MNLKLWDIRMDSTPVATFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 342 l~~~~-~------~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
+++.. + ..|+.++. .++.+..+.......... .....+... -+++++|+|+.|.++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~--~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDL--DGRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECC--CCcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEEC
Confidence 88764 3 34555554 366666653322211100 112223333 68999999996665554
No 458
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.55 E-value=72 Score=32.07 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred EEcCCCc---EEEEEeCCCeEEEEecCCCCcc
Q 010801 391 SVSGDGL---HFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 391 ~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
....+|+ .++.+..+|.+++.|..+|+.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 3335666 7889999999999999998653
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.52 E-value=17 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=27.6
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..+|.+..||..+++.. ..+++ -.-.+.+++++|+.+++.+.-
T Consensus 34 ~~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp ---EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence 33578888998887542 22222 235689999999999888753
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.43 E-value=48 Score=30.01 Aligned_cols=57 Identities=5% Similarity=0.095 Sum_probs=41.7
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC------CCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
|-|-+||+. ++.++++......-. . +.++..| .+.+|+.--.||+|..||..++..+
T Consensus 222 G~VdvFd~~--G~l~~r~as~g~LNa----------P---WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 222 GYVNVFTLN--GQLLRRVASSGRLNA----------P---WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ceEEEEcCC--CcEEEEeccCCcccC----------C---ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 789999985 899888853332211 1 5777766 4677887777999999999888554
No 461
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.94 E-value=59 Score=30.75 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=77.0
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--c-CCCcEEEEEeCCCeEEEEEccC---Ccccccccceeec
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 312 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p-~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~ 312 (501)
.+|++|.+......+..+.-....+..-...++.+|+- | +|.-+.++...+|.+..|-+.. +......++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 57999987732223332110000011112346777763 3 3423566677899998887753 2223333455554
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeE-e-ec-cccccccccccCCCCCcceee
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-F-KI-HEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~ 388 (501)
...+..|+......+|..+.. .-|.-|+.+.......+ + .. ..... -++-
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~------------aDvE 260 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV------------ADVE 260 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EE
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc------------cCcc
Confidence 356888999888788888864 55666666532211111 1 11 11111 1223
Q ss_pred EEEEc--CCC-cEEEEEe-CCCeEEEEecCCC
Q 010801 389 ECSVS--GDG-LHFATGS-YSNLLRIFSHGVG 416 (501)
Q Consensus 389 ~~~~s--~~~-~~l~s~~-~dg~i~iwd~~~~ 416 (501)
.+++- .++ .||+..+ .+++..||+.+..
T Consensus 261 Glaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 261 GLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 55553 343 3555444 4789999998764
No 462
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.85 E-value=85 Score=32.50 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEe
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFET 61 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~ 61 (501)
.+.|-+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 467899999999997777777788888763
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.20 E-value=45 Score=28.46 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=23.7
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECC
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLE 247 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~ 247 (501)
...+.+++..|-..-|+.|.++.+.+|.+.
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~ 163 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLK 163 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence 456778888886667777878899999877
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.90 E-value=1.2e+02 Score=33.22 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=29.9
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecC
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~ 63 (501)
..+-......++|+|.-..+|.|...|.|.++-...
T Consensus 31 ~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 31 RHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ecCCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 333456788999999999999999999999998654
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.54 E-value=82 Score=30.59 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.5
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..++..+..+.|++.+.+|.|.+|++..+
T Consensus 193 ~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 193 VQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 68999998899999999999999999853
No 466
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=74.68 E-value=1.4e+02 Score=32.77 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred cchhhhhhhccCCCCCCccccccceEEEEEccCC------CEEEEEe---------cCCcEEEEEecCCcCCCCccchhh
Q 010801 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG------DYLAVGD---------RGGRVILFETVGGKNTPNQHISRS 75 (501)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g------~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~ 75 (501)
|..|+..-. -...+.+|--.+..+.....+ .|||+|. ..|.+.|+|+- +..+
T Consensus 1011 P~sw~vi~~----iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diI---------eVVP 1077 (1366)
T KOG1896|consen 1011 PESWEVIDK----IEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDII---------EVVP 1077 (1366)
T ss_pred CCccccccc----cccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEE---------EecC
Q ss_pred hhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEec-cccceeeeec
Q 010801 76 ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKE 154 (501)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~-~~~~~~~~~~ 154 (501)
+.+.+.. .++..-.++.-. +++|..++ .-..+|+++...+ |.+|++ ++..++.+
T Consensus 1078 epgkP~t-------~~KlKel~~eE~-----------KGtVsavc----eV~G~l~~~~GqK-I~v~~l~r~~~ligV-- 1132 (1366)
T KOG1896|consen 1078 EPGKPFT-------KNKLKELYIEEQ-----------KGTVSAVC----EVRGHLLSSQGQK-IIVRKLDRDSELIGV-- 1132 (1366)
T ss_pred CCCCCcc-------cceeeeeehhhc-----------ccceEEEE----EeccEEEEccCcE-EEEEEeccCCcceee--
Q ss_pred cCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE
Q 010801 155 MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV 234 (501)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 234 (501)
.--.-++.-....-=.++|+
T Consensus 1133 ------------------------------------------------------------aFiD~~~yv~s~~~vknlIl 1152 (1366)
T KOG1896|consen 1133 ------------------------------------------------------------AFIDLPLYVHSMKVVKNLIL 1152 (1366)
T ss_pred ------------------------------------------------------------EEeccceeEEehhhhhhhee
Q ss_pred EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEE
Q 010801 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLV 295 (501)
Q Consensus 235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~w 295 (501)
.| --..|.+.........+..+ .-....-.+.++.|--+|.+ .++++..++.|++|
T Consensus 1153 ~gDV~ksisfl~fqeep~rlsL~-----srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEEPYRLSLL-----SRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred hhhhhhceEEEEEccCceEEEEe-----ecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
No 467
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.66 E-value=9.4 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=18.2
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEE
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILF 59 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw 59 (501)
...++++++|+++++=+...+|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678888888877776666677654
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.50 E-value=19 Score=36.48 Aligned_cols=28 Identities=11% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
+..++++.+.|+++|+||+.++++....
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 5678999999999999999999986654
No 469
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.35 E-value=1.2e+02 Score=32.07 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred EeecCCCCEEEEeeCCCeEEEEec-cccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEE
Q 010801 121 WCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 199 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~d~~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w 199 (501)
++|.+...-++.....|.+++|-. .+++...........
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s---------------------------------------- 95 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELES---------------------------------------- 95 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhcc----------------------------------------
Q ss_pred eccCceeeeeeEeecCCcccceE---EEEecCCCCEEEEE-cC---CeEEEEECCCCCe-------e-----eeeeecCC
Q 010801 200 NVGNSVHARCQKVYPHAHDFNIN---SISNNSDCETFVSA-DD---LRINLWNLEISDQ-------C-----FNIVDMKP 260 (501)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~---~l~~~~~~~~l~~~-~d---~~i~iwd~~~~~~-------~-----~~~~~~~~ 260 (501)
.++..... ++++..+|+.++.+ .+ +.|++|.+...-. . +.+..+..
T Consensus 96 ---------------~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~ 160 (753)
T PF11635_consen 96 ---------------LGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIAD 160 (753)
T ss_pred ---------------ccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccc
Q ss_pred CCCCC-------------cccceEEEEEec------CCCcEEEEEeCCC----eEEEEEccCC-----------------
Q 010801 261 SNMDD-------------LTEVITSAEFHP------IYCNLLAYSSSRG----FVRLVDMRQS----------------- 300 (501)
Q Consensus 261 ~~~~~-------------~~~~v~~v~~~p------~~~~~l~~~~~dg----~i~~wd~~~~----------------- 300 (501)
..... ....++.+.|-+ ..+..+++.+..+ .|.-|.++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~ 240 (753)
T PF11635_consen 161 ETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNS 240 (753)
T ss_pred cccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcC
Q ss_pred ------cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccc
Q 010801 301 ------ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 301 ------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
....+....+.. ...|.++....-+.+++.. .||+|.++|..+ -+.+...........
T Consensus 241 ~~~~~~~~~l~~~~~i~~--------------~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~ 305 (753)
T PF11635_consen 241 SSEPPPTYRLRRLDDITL--------------NKRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPN 305 (753)
T ss_pred CCCCCCceeEEEeccccc--------------CCeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCcc
Q ss_pred cccccCCCCCcceeeE----EEEcCCCcEEEEEeCCCeEE
Q 010801 374 KLCDLYNNDSIFDKFE----CSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~----~~~s~~~~~l~s~~~dg~i~ 409 (501)
....+....-.|+... ++|||++..++.-..+|.+.
T Consensus 306 ~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 306 TVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.28 E-value=91 Score=30.10 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=35.6
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEe
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 355 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~ 355 (501)
.++.+-+.||.+.+|+-+.-... +.+.. ---...+.|.+.-..+++++ ...+.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 67888999999999997653211 11111 01123456777766677664 477877764
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=73.26 E-value=1.4e+02 Score=32.18 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=28.2
Q ss_pred ccceEEEEEccCC------CEEEEEecCCcEEEEEecCC
Q 010801 32 VDIVSAIEFDKTG------DYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 32 ~~~v~~v~~s~~g------~~latg~~dg~i~iw~~~~~ 64 (501)
+..|.|+++.+++ ++++.|+.|+.+++..+.-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~ 620 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS 620 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc
Confidence 5679999999865 68999999999999998733
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.57 E-value=1.4e+02 Score=31.83 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred ccccceEEEEEc---c----CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 30 QDVDIVSAIEFD---K----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 30 ~h~~~v~~v~~s---~----~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
.-..+|..|+|+ . ..++|++-. ...+.|+...-.+.. .... ...+.-...++..+..+.-
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~----------~~~~--~~~s~i~~~~l~~i~~~~t 143 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVI----------SSIR--SRPSRIDPNPLLTISSSDT 143 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEccccccc----------cccc--CCccccccceeEEechhhc
Confidence 347899999998 3 235776654 557888874322110 0000 0011112333444443220
Q ss_pred chhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
...+..+++|+| -+...||.....|...||++............. ....
T Consensus 144 ---------gg~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~-------------------~~~~-- 192 (765)
T PF10214_consen 144 ---------GGFPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL-------------------SRNI-- 192 (765)
T ss_pred ---------CCCccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceee-------------------ccCC--
Confidence 014578899987 345689999999999999993222111000000 0000
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.|.| +.| ....+.-..+.|.++.+.|+.+....+.++|++.......++
T Consensus 193 ----------~gsi-~~d--------------~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~------ 241 (765)
T PF10214_consen 193 ----------SGSI-IFD--------------PEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLV------ 241 (765)
T ss_pred ----------Cccc-cCC--------------CcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhc------
Confidence 0111 011 112244557889888889999977889999999443311121
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.......|..+.-+|....+++.-+ ...|...|+...
T Consensus 242 ~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 242 TAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred cCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 3345567899988887423333322 357777788763
No 473
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=71.65 E-value=71 Score=28.14 Aligned_cols=124 Identities=12% Similarity=0.145 Sum_probs=63.7
Q ss_pred EEEEEecCCCcEEEEEeC-C--CeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 271 TSAEFHPIYCNLLAYSSS-R--GFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~-d--g~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.+-.+-|+| ++|.+|+. + ..+++++... ...+ ...+. ... -....+--.+..-|||+.|+.|+
T Consensus 70 Sgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~----~w~e~-~~~-------m~~~RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 70 SGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC----DWTES-PND-------MQSGRWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred cCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC----CceEC-ccc-------ccCCCccccceECCCCCEEEEeC
Confidence 344567898 99988876 2 4477777654 1111 11111 000 00134566677778999998875
Q ss_pred C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
. .+..+|.-.........+........ ......+ -.+...|+|++++.+..+.. |||..+.
T Consensus 137 ~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlY--P~~~llPdG~lFi~an~~s~--i~d~~~n 199 (243)
T PF07250_consen 137 SNNPTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLY--PFVHLLPDGNLFIFANRGSI--IYDYKTN 199 (243)
T ss_pred cCCCcccccCCccCCCCceeeecchhhhc-----cCccccC--ceEEEcCCCCEEEEEcCCcE--EEeCCCC
Confidence 3 45566654321111111110000000 0000111 35778899999988887544 6687766
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.20 E-value=82 Score=34.45 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.8
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
++++..++++-.||.+..||...+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999998863
No 475
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.06 E-value=20 Score=36.21 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=25.0
Q ss_pred cceEEEEEec----CCCcEEEEEeCCCeEEEEEccCCcc
Q 010801 268 EVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSAL 302 (501)
Q Consensus 268 ~~v~~v~~~p----~~~~~l~~~~~dg~i~~wd~~~~~~ 302 (501)
..+..+++++ +. .++++.+.|+.+|+||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3445566665 44 7999999999999999999876
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=1.1e+02 Score=29.97 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=49.9
Q ss_pred cceeEEEEeeCCCEEEE-EcCCcEEEEEeeC--------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC--
Q 010801 328 ASISDIKFANDGQHLLS-RDYMNLKLWDIRM--------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-- 396 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~-~~~~~i~lwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 396 (501)
-.|..+..++.|..++- |.+|.+.++=.+. ++++.-..+.. +.-..+|....-..+..++|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~----~i~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTT----PVAERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEee----cccceeeccCCceeeeeccccCCccC
Confidence 45788889999988775 4556554442111 12222111110 000112222222234678999975
Q ss_pred -cEEEEEeCCCeEEEEecCCCCc
Q 010801 397 -LHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 397 -~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..|..-+.|..||||++.....
T Consensus 180 D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CceEEEEecCcEEEEEecCCcch
Confidence 6788888999999999986543
No 477
>PHA02790 Kelch-like protein; Provisional
Probab=68.91 E-value=1.3e+02 Score=29.94 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=15.3
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCC
Q 010801 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~~~d-----g~i~iwd~~~~ 416 (501)
++++.+.||.+ ..|..||..++
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCC
Confidence 67788888754 35677777665
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.15 E-value=24 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred cCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 277 PIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 277 p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
|++..++++...++.|.++|..+++..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 456234444556899999999776543
No 479
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.34 E-value=1.4e+02 Score=28.84 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=34.4
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
.||.+.+|+-+. ..+... ++. ---...+.|.+.- ..|++++.+..+..|...
T Consensus 153 ~DG~L~~feqe~--~~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQES--FAFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCCc--EEEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 899999998772 221211 222 1122346788887 889999999899888653
No 480
>PHA02790 Kelch-like protein; Provisional
Probab=64.27 E-value=1.6e+02 Score=29.31 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=14.4
Q ss_pred CCCcEEEEEeCC-----CeEEEEEccCC
Q 010801 278 IYCNLLAYSSSR-----GFVRLVDMRQS 300 (501)
Q Consensus 278 ~~~~~l~~~~~d-----g~i~~wd~~~~ 300 (501)
++ ++.+.|+.+ ..+..||..++
T Consensus 446 ~~-~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 446 DN-KLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CC-EEEEECCcCCCcccceEEEEECCCC
Confidence 45 788888754 35667777654
No 481
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=63.79 E-value=20 Score=18.96 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.3
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
+.|.+++..+ .++|++...+.+|||.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4578888764 4888888889999973
No 482
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.61 E-value=94 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=20.2
Q ss_pred CCCEEEEee--CCCeEEEEeccccceeeee
Q 010801 126 NGSMFILST--NDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 126 ~~~~l~s~s--~d~~i~lw~~~~~~~~~~~ 153 (501)
+|.++.+.+ ....|++||+.+++.....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~ 84 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE 84 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe
Confidence 566677765 3457999999988876554
No 483
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=62.75 E-value=2.6e+02 Score=31.27 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=36.6
Q ss_pred eEEEEeeCCCEEEEEcC----CcEEEEEeeCCCCceeEeeccccccc----cccc------cCCCCCcc-eeeEEEEcCC
Q 010801 331 SDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEHLRP----KLCD------LYNNDSIF-DKFECSVSGD 395 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~-~~~~~~~s~~ 395 (501)
.+++++++|.+.++-+| +.|+. +.+++ .+..+.|....-. ..|+ .+..+..+ ...++|.+||
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~--~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRK--LSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEE--eccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCC
Confidence 68899999988777665 33443 33323 4555554432211 1111 11111111 2257888888
Q ss_pred CcEEEEEeC
Q 010801 396 GLHFATGSY 404 (501)
Q Consensus 396 ~~~l~s~~~ 404 (501)
|..+++-..
T Consensus 673 g~v~IAD~g 681 (1899)
T KOG4659|consen 673 GDVIIADSG 681 (1899)
T ss_pred CcEEEecCC
Confidence 876665443
No 484
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.48 E-value=2.3e+02 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=22.5
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
.+.+++.++.|+.+.-.|.++|+....+
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence 4558888889999999999999866543
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=60.30 E-value=59 Score=23.19 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=22.2
Q ss_pred eEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 388 FECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
+.+.++|++++|..++. .+.|++|+..
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 58999999998876654 7899999875
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=59.37 E-value=1.4e+02 Score=27.20 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=23.7
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEec
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETV 62 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~ 62 (501)
-+-|+|+|.+.+-++....+...+||..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCC
Confidence 4779999999888877777899999976
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=58.00 E-value=27 Score=18.95 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=20.0
Q ss_pred CEEEEeeCCCeEEEEeccccceeee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKI 152 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~ 152 (501)
..++.++.++.+..+|..+|+....
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677788899999999988876543
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=57.89 E-value=1.9e+02 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.4
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
..|.+++..+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 349999999988 9999999999999999975
No 489
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=57.80 E-value=40 Score=30.90 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=52.8
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
--++++...++|.+|++... ..|.+.|-++ ++.+-.+.+....-.. - .-..+++-.|-+++-.+..++
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~-----~-----~~~~f~~QHdar~~~~~~~~~ 212 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFT-----L-----PATNFSWQHDARFLNESNDDG 212 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCccc-----c-----cCCcEeeccCCEEeccCCCCC
Confidence 34778888899999999876 8999999876 8877777665221000 0 002356666666776677889
Q ss_pred eEEEEecC
Q 010801 407 LLRIFSHG 414 (501)
Q Consensus 407 ~i~iwd~~ 414 (501)
.|.|+|-.
T Consensus 213 ~IslFDN~ 220 (299)
T PF14269_consen 213 TISLFDNA 220 (299)
T ss_pred EEEEEcCC
Confidence 99999873
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=55.55 E-value=2.5e+02 Score=28.92 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.0
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
-.+.|-.+.|.++++.+++...+|.|.+||++.+
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence 4688999999999999999999999999999433
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.52 E-value=57 Score=23.26 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=23.4
Q ss_pred ceeEEEEeeCCCEEEEEc--CCcEEEEEee
Q 010801 329 SISDIKFANDGQHLLSRD--YMNLKLWDIR 356 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~~~i~lwd~~ 356 (501)
..+.+.++|++++|..++ .+.|++|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 467899999999998775 3899999875
No 492
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=55.51 E-value=3.4e+02 Score=30.42 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCeEEEEEccCCCEEEEeeC
Q 010801 474 SKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 474 ~~i~~~~~sp~~~~la~~~~ 493 (501)
..+.++|.+|||...++-..
T Consensus 662 nsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 662 NSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred CCcceEEECCCCcEEEecCC
Confidence 45678899999887665443
No 493
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=52.90 E-value=1.8e+02 Score=26.39 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=60.2
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 306 (501)
-.|++...+ .+.-..+.|+.......-. ............++.+ | ++-..+..|+-+.+-|+.+....
T Consensus 136 vsGn~aYVadlddgfLivdvsdpssP~la-----grya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sP--- 204 (370)
T COG5276 136 VSGNYAYVADLDDGFLIVDVSDPSSPQLA-----GRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSP--- 204 (370)
T ss_pred ecCCEEEEeeccCcEEEEECCCCCCceee-----eeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCC---
Confidence 357788777 5667777888744432211 0122223333566665 4 66777788999999999875432
Q ss_pred cceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
.+.++- .-...+.++..+++-.+++..+. -+.+-|..
T Consensus 205 --vli~~~----------n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s 241 (370)
T COG5276 205 --VLIGSY----------NTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVS 241 (370)
T ss_pred --eEEEEE----------ecCCceEEEEecCCeeEEEEccc-ceEEEecC
Confidence 222210 01226777877777666666543 34555654
No 494
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=51.47 E-value=49 Score=21.20 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.2
Q ss_pred ceEEEEEccCCCEEEEEec
Q 010801 34 IVSAIEFDKTGDYLAVGDR 52 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~ 52 (501)
.+.+++..|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4688999999999999853
No 495
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=50.26 E-value=65 Score=33.47 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=48.2
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
-..+|...++..| ++.++.+|.|.++...+.....+ ...| ..|...|+.+.+..+|-+++-+
T Consensus 625 g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~----leah----------qee~~~Vthm~~~~~gVwvafa 686 (925)
T KOG3522|consen 625 GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWD----LEAH----------QEEAHSVTHMLYLDNGVWVAFA 686 (925)
T ss_pred CCccccchhhhhc----eeeeecCCceEEEechhccccch----hHHH----------HhhcceEEEEEeeCCceEEEEc
Confidence 3456777777644 66678899999998877543211 1111 1234679999999888777766
Q ss_pred cCCcEEEEEeeC
Q 010801 346 DYMNLKLWDIRM 357 (501)
Q Consensus 346 ~~~~i~lwd~~~ 357 (501)
+...+++++..+
T Consensus 687 sG~~~rlfhtet 698 (925)
T KOG3522|consen 687 SGDEERLFHTET 698 (925)
T ss_pred CCCEEEEecccc
Confidence 555666666544
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.74 E-value=59 Score=33.24 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=48.8
Q ss_pred CcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEE
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~ 294 (501)
.....++++.-+|.++-++.+ .||.|.+|+.. .++..+++ ....+-..+.|...| |+++..|+.+.-
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~-~r~qski~--------~~~~p~~nlv~tnhg---l~~~tsdrr~la 79 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI-PRRQSKIC--------EEAKPKENLVFTNHG---LVTATSDRRALA 79 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeec-ccchhhhh--------hhcCCccceeeeccc---eEEEeccchhhe
Confidence 345567788889999999999 99999999987 33322221 122233556677666 778888888888
Q ss_pred EEc
Q 010801 295 VDM 297 (501)
Q Consensus 295 wd~ 297 (501)
|.-
T Consensus 80 ~~~ 82 (1636)
T KOG3616|consen 80 WKE 82 (1636)
T ss_pred eec
Confidence 854
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.70 E-value=40 Score=34.36 Aligned_cols=90 Identities=8% Similarity=0.111 Sum_probs=53.0
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH 466 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~ 466 (501)
+++.-+|.++-++.++.||+|++|+...... ..+.....|-..+.|.. -| |++...|.. --|..++.+
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~q--ski~~~~~p~~nlv~tn--hg-------l~~~tsdrr~la~~~dgvv 86 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ--SKICEEAKPKENLVFTN--HG-------LVTATSDRRALAWKEDGVV 86 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccch--hhhhhhcCCccceeeec--cc-------eEEEeccchhheeeccCcc
Confidence 6788889999999999999999999875422 22222333333444432 11 566666666 677555444
Q ss_pred cccccc----CCCeEEEEEccCCCEE
Q 010801 467 ELSYNL----SSKLLHLAWHPTTNLI 488 (501)
Q Consensus 467 ~~~~~~----~~~i~~~~~sp~~~~l 488 (501)
....+. +....++.+.|....+
T Consensus 87 qqqfdyndqsekefss~~cdptaqnv 112 (1636)
T KOG3616|consen 87 QQQFDYNDQSEKEFSSILCDPTAQNV 112 (1636)
T ss_pred hhhccccchhhhhccceecCchhhhh
Confidence 333322 2344455566654443
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=49.21 E-value=1.2e+02 Score=32.23 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=32.8
Q ss_pred ccceeEEEEeeCCCEEEEE-cC------CcEEEEEeeCCCCceeEeecccccc
Q 010801 327 IASISDIKFANDGQHLLSR-DY------MNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~-~~------~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
..+|.+-.|||||+.|+-+ +. ..|++-|+++.+.-+-.+......+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai 401 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI 401 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc
Confidence 4688999999999999963 21 3588889987665555565555444
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=49.05 E-value=2.2e+02 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=27.6
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcC
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~ 66 (501)
-|++|...++|+||++.-.-..|.+.+..+|+.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I 177 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI 177 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcE
Confidence 488889999999999988778888888777754
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=48.50 E-value=3.5e+02 Score=28.45 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=41.3
Q ss_pred EEEEEecCCCcEEEEEeCCCe-----EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 271 TSAEFHPIYCNLLAYSSSRGF-----VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
..+.|-|+| ..+++-..||. |.++....-+... +.. -.+....+...+|+-....++.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGe-----f~l----------r~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGE-----FDL----------RVGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCC-----ccc----------cCCchhhhhhhhhhHHHHHHHHh
Confidence 458899999 88988776543 4444322211000 000 01112456667777666667766
Q ss_pred cCCcEEEEEee
Q 010801 346 DYMNLKLWDIR 356 (501)
Q Consensus 346 ~~~~i~lwd~~ 356 (501)
..+.+.+|-..
T Consensus 314 ~~n~~~lwttk 324 (1243)
T COG5290 314 EGNLLKLWTTK 324 (1243)
T ss_pred hcceEEEEEcc
Confidence 66899999765
Done!