Query 010801
Match_columns 501
No_of_seqs 490 out of 2425
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 14:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 9.3E-49 3.2E-53 382.4 42.2 435 10-501 8-444 (447)
2 1nr0_A Actin interacting prote 100.0 1.5E-46 5.1E-51 380.2 45.2 399 29-501 56-565 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 7.4E-44 2.5E-48 359.3 43.7 354 30-500 219-577 (577)
4 1nr0_A Actin interacting prote 100.0 8.3E-44 2.8E-48 360.1 42.0 390 28-501 143-609 (611)
5 2ynn_A Coatomer subunit beta'; 100.0 3E-43 1E-47 324.6 37.2 286 30-462 11-300 (304)
6 3ow8_A WD repeat-containing pr 100.0 4.9E-43 1.7E-47 325.3 37.2 284 29-462 29-319 (321)
7 1vyh_C Platelet-activating fac 100.0 2.7E-43 9.3E-48 338.7 36.5 281 29-461 105-408 (410)
8 2ymu_A WD-40 repeat protein; u 100.0 3.8E-42 1.3E-46 346.8 43.5 354 30-500 178-536 (577)
9 4gqb_B Methylosome protein 50; 100.0 2.3E-42 7.8E-47 323.1 33.4 279 29-437 27-309 (344)
10 4g56_B MGC81050 protein; prote 100.0 1.7E-42 5.9E-47 326.6 32.4 273 29-437 39-321 (357)
11 1got_B GT-beta; complex (GTP-b 100.0 3.5E-41 1.2E-45 315.9 37.2 285 30-461 53-340 (340)
12 3frx_A Guanine nucleotide-bind 100.0 1.1E-40 3.8E-45 309.5 39.3 291 30-500 15-314 (319)
13 3ow8_A WD repeat-containing pr 100.0 4.7E-41 1.6E-45 311.9 36.4 290 91-501 22-319 (321)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-40 4.2E-45 312.8 39.5 298 30-500 13-332 (345)
15 1vyh_C Platelet-activating fac 100.0 5.9E-41 2E-45 322.4 37.0 283 94-501 101-409 (410)
16 2oaj_A Protein SNI1; WD40 repe 100.0 9.5E-41 3.3E-45 349.7 39.3 386 29-500 14-658 (902)
17 2ynn_A Coatomer subunit beta'; 100.0 2.5E-40 8.5E-45 305.0 36.5 284 93-500 5-299 (304)
18 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-40 1.4E-44 360.8 44.3 371 30-501 613-1156(1249)
19 2pbi_B Guanine nucleotide-bind 100.0 2.3E-40 7.9E-45 311.8 36.2 288 29-460 61-353 (354)
20 4ery_A WD repeat-containing pr 100.0 9.8E-40 3.4E-44 302.6 39.2 283 30-500 21-309 (312)
21 1erj_A Transcriptional repress 100.0 3E-40 1E-44 315.9 33.5 300 29-460 61-385 (393)
22 1got_B GT-beta; complex (GTP-b 100.0 2.4E-39 8.1E-44 303.5 38.4 289 90-500 44-340 (340)
23 2xzm_R RACK1; ribosome, transl 100.0 9.8E-39 3.3E-43 299.8 42.2 300 30-500 19-337 (343)
24 2pm9_A Protein WEB1, protein t 100.0 4.7E-41 1.6E-45 324.7 26.6 338 29-501 9-412 (416)
25 3iz6_a 40S ribosomal protein R 100.0 3.3E-40 1.1E-44 314.2 30.7 304 29-464 63-375 (380)
26 3vl1_A 26S proteasome regulato 100.0 9.2E-40 3.1E-44 316.1 33.6 328 33-501 57-417 (420)
27 1r5m_A SIR4-interacting protei 100.0 1.8E-39 6.1E-44 314.2 35.7 329 28-501 41-423 (425)
28 2hes_X YDR267CP; beta-propelle 100.0 2.9E-39 9.9E-44 301.5 35.3 295 30-463 12-327 (330)
29 3sfz_A APAF-1, apoptotic pepti 100.0 3E-39 1E-43 353.9 37.5 395 30-500 655-1204(1249)
30 3iz6_a 40S ribosomal protein R 100.0 2.5E-39 8.4E-44 308.1 30.9 300 90-500 55-372 (380)
31 2j04_B YDR362CP, TAU91; beta p 100.0 8.3E-40 2.8E-44 320.8 28.3 336 28-500 129-514 (524)
32 1pgu_A Actin interacting prote 100.0 7.4E-38 2.5E-42 317.9 43.3 385 29-500 15-611 (615)
33 4aow_A Guanine nucleotide-bind 100.0 4.5E-38 1.6E-42 295.1 38.4 300 30-417 36-339 (340)
34 2pbi_B Guanine nucleotide-bind 100.0 3E-38 1E-42 297.4 36.7 290 92-500 55-354 (354)
35 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-38 1.2E-42 330.8 40.8 323 30-500 11-383 (814)
36 4gqb_B Methylosome protein 50; 100.0 2.7E-38 9.4E-43 295.5 35.2 249 29-416 79-332 (344)
37 4e54_B DNA damage-binding prot 100.0 1.3E-38 4.5E-43 308.9 32.2 296 30-501 117-428 (435)
38 1gxr_A ESG1, transducin-like e 100.0 2.6E-38 8.8E-43 296.2 32.7 323 30-500 7-334 (337)
39 2hes_X YDR267CP; beta-propelle 100.0 1.2E-37 4.2E-42 290.5 36.2 292 91-501 4-326 (330)
40 3dm0_A Maltose-binding peripla 100.0 3E-37 1E-41 317.3 40.1 307 30-501 380-691 (694)
41 2pm7_B Protein transport prote 100.0 1.9E-37 6.5E-42 284.7 32.0 257 29-415 6-285 (297)
42 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-36 5.3E-41 288.4 38.3 327 31-500 7-358 (372)
43 3ei3_B DNA damage-binding prot 100.0 4.6E-37 1.6E-41 293.3 34.6 300 29-501 70-380 (383)
44 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-36 1.3E-40 314.9 40.5 398 29-501 55-730 (902)
45 4g56_B MGC81050 protein; prote 100.0 8.2E-37 2.8E-41 287.8 30.9 249 29-416 91-344 (357)
46 1gxr_A ESG1, transducin-like e 100.0 9.5E-36 3.2E-40 278.8 37.9 284 29-461 48-334 (337)
47 3frx_A Guanine nucleotide-bind 100.0 2.4E-36 8.3E-41 280.3 32.9 249 30-416 63-318 (319)
48 3dwl_C Actin-related protein 2 100.0 1.9E-37 6.5E-42 295.3 24.9 261 31-415 10-281 (377)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-36 1.3E-40 282.3 33.3 268 30-419 59-339 (345)
50 3bg1_A Protein SEC13 homolog; 100.0 5.5E-37 1.9E-41 284.2 27.0 257 29-415 10-293 (316)
51 3zwl_B Eukaryotic translation 100.0 9.7E-36 3.3E-40 282.4 36.2 289 29-463 29-345 (369)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-35 3.7E-40 289.6 37.1 306 29-500 115-439 (445)
53 3k26_A Polycomb protein EED; W 100.0 8.9E-36 3E-40 282.3 35.4 308 30-501 16-364 (366)
54 2pm9_A Protein WEB1, protein t 100.0 2.3E-36 7.9E-41 291.8 30.9 309 26-463 61-413 (416)
55 3v7d_B Cell division control p 100.0 2.4E-35 8.1E-40 288.9 38.4 316 29-498 118-457 (464)
56 1erj_A Transcriptional repress 100.0 6.3E-36 2.2E-40 286.0 33.4 258 32-415 123-389 (393)
57 2xzm_R RACK1; ribosome, transl 100.0 7.4E-36 2.5E-40 280.2 31.7 255 29-416 73-341 (343)
58 3gre_A Serine/threonine-protei 100.0 1.8E-35 6.1E-40 287.5 35.3 342 30-500 61-437 (437)
59 4aow_A Guanine nucleotide-bind 100.0 8.7E-35 3E-39 272.7 37.1 291 90-501 27-335 (340)
60 3jrp_A Fusion protein of prote 100.0 2E-35 6.9E-40 281.3 32.7 258 29-417 8-289 (379)
61 3i2n_A WD repeat-containing pr 100.0 1.5E-35 5.1E-40 279.9 31.6 288 30-463 16-352 (357)
62 4h5i_A Guanine nucleotide-exch 100.0 5.3E-36 1.8E-40 283.0 27.9 305 32-416 14-344 (365)
63 3zwl_B Eukaryotic translation 100.0 2.6E-34 8.8E-39 272.5 38.8 295 91-500 22-343 (369)
64 1sq9_A Antiviral protein SKI8; 100.0 2.7E-35 9.1E-40 282.5 32.1 302 30-462 14-393 (397)
65 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-34 1.1E-38 265.6 37.0 275 30-462 16-294 (313)
66 4a11_B DNA excision repair pro 100.0 2.5E-34 8.5E-39 276.6 34.9 345 30-500 41-402 (408)
67 1r5m_A SIR4-interacting protei 100.0 6.1E-35 2.1E-39 282.4 30.8 294 31-463 107-424 (425)
68 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-35 6.1E-40 282.5 26.0 320 32-492 15-349 (588)
69 3mkq_A Coatomer beta'-subunit; 100.0 2.3E-34 7.8E-39 301.9 36.8 365 30-500 53-457 (814)
70 2pm7_B Protein transport prote 100.0 4.5E-34 1.6E-38 262.2 34.3 252 95-500 3-282 (297)
71 4gga_A P55CDC, cell division c 100.0 7.6E-34 2.6E-38 274.2 36.6 281 34-464 107-395 (420)
72 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-34 1.8E-38 268.1 34.5 272 29-419 8-341 (351)
73 4aez_A CDC20, WD repeat-contai 100.0 2.6E-34 8.9E-39 275.8 32.6 273 35-462 96-378 (401)
74 1yfq_A Cell cycle arrest prote 100.0 2.2E-34 7.4E-39 270.3 31.0 285 30-457 9-315 (342)
75 1pgu_A Actin interacting prote 100.0 8.4E-34 2.9E-38 288.1 36.3 346 30-463 61-613 (615)
76 3vl1_A 26S proteasome regulato 100.0 3.6E-34 1.2E-38 276.8 31.4 288 33-463 98-418 (420)
77 4ery_A WD repeat-containing pr 100.0 1.7E-33 5.7E-38 260.7 34.6 245 30-414 63-311 (312)
78 1sq9_A Antiviral protein SKI8; 100.0 7.4E-34 2.5E-38 272.4 32.2 299 92-500 7-392 (397)
79 3dm0_A Maltose-binding peripla 100.0 6.9E-34 2.4E-38 292.3 32.3 259 29-414 427-692 (694)
80 4ggc_A P55CDC, cell division c 100.0 6.8E-33 2.3E-37 257.2 35.8 280 34-463 27-314 (318)
81 3jro_A Fusion protein of prote 100.0 2.1E-34 7.3E-39 297.6 26.4 257 29-416 6-286 (753)
82 4aez_A CDC20, WD repeat-contai 100.0 4.8E-33 1.6E-37 267.0 33.7 249 31-425 133-390 (401)
83 3i2n_A WD repeat-containing pr 100.0 2.9E-33 9.8E-38 264.2 30.1 289 94-500 11-350 (357)
84 3bg1_A Protein SEC13 homolog; 100.0 2E-33 7E-38 260.2 26.1 251 95-462 7-291 (316)
85 3k26_A Polycomb protein EED; W 100.0 1.6E-33 5.6E-38 266.8 25.4 262 31-414 68-365 (366)
86 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-32 5.4E-37 266.3 32.8 273 30-464 131-414 (435)
87 3mmy_A MRNA export factor; mRN 100.0 1.8E-32 6.1E-37 259.7 32.0 292 30-460 37-342 (368)
88 4gga_A P55CDC, cell division c 100.0 2.1E-32 7.3E-37 264.1 32.6 248 30-418 145-398 (420)
89 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-32 5.2E-37 260.8 29.8 253 30-418 50-364 (372)
90 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-33 5.9E-38 276.0 22.3 298 30-464 205-517 (524)
91 4a11_B DNA excision repair pro 100.0 2.6E-32 8.8E-37 262.5 29.5 311 95-500 37-362 (408)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 4.2E-32 1.4E-36 260.6 30.4 292 34-463 36-341 (402)
93 3v7d_B Cell division control p 100.0 2.6E-31 8.8E-36 260.3 36.0 294 93-501 113-419 (464)
94 4h5i_A Guanine nucleotide-exch 100.0 1.3E-32 4.6E-37 259.7 25.3 290 114-500 15-340 (365)
95 1yfq_A Cell cycle arrest prote 100.0 1.3E-31 4.5E-36 251.3 31.4 268 114-496 12-315 (342)
96 4gq1_A NUP37; propeller, trans 100.0 5.2E-32 1.8E-36 258.6 28.3 261 125-500 99-386 (393)
97 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-31 4.6E-36 251.6 30.6 299 95-500 5-334 (351)
98 3jrp_A Fusion protein of prote 100.0 3.8E-31 1.3E-35 251.7 33.3 214 93-417 3-242 (379)
99 2xyi_A Probable histone-bindin 100.0 2.7E-31 9.1E-36 257.1 30.7 266 28-416 124-411 (430)
100 3dwl_C Actin-related protein 2 100.0 3.8E-32 1.3E-36 258.6 24.3 210 29-356 52-280 (377)
101 3ei3_B DNA damage-binding prot 100.0 2.2E-31 7.6E-36 253.9 29.5 253 30-415 116-382 (383)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.9E-31 2.7E-35 255.5 33.9 239 114-437 103-364 (450)
103 3gre_A Serine/threonine-protei 100.0 2.9E-32 1E-36 264.8 23.7 283 93-501 54-357 (437)
104 3lrv_A PRE-mRNA-splicing facto 100.0 3.6E-31 1.2E-35 248.3 29.3 247 38-418 42-295 (343)
105 4e54_B DNA damage-binding prot 100.0 5.9E-32 2E-36 262.2 24.6 263 28-418 160-433 (435)
106 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4E-35 247.2 32.1 279 91-494 29-336 (368)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-30 5.5E-35 244.7 32.3 250 29-416 16-272 (355)
108 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-30 1.7E-34 249.7 35.1 264 30-457 157-430 (445)
109 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-30 2E-34 236.9 32.4 241 30-418 57-299 (313)
110 4ggc_A P55CDC, cell division c 100.0 5.4E-30 1.9E-34 237.6 31.6 246 30-416 65-316 (318)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-30 1E-34 247.6 30.2 256 29-419 78-346 (402)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-29 4.2E-34 246.0 33.1 263 114-500 134-411 (435)
113 3dw8_B Serine/threonine-protei 100.0 2.6E-30 8.9E-35 251.8 26.7 248 113-428 28-328 (447)
114 2xyi_A Probable histone-bindin 100.0 7.5E-30 2.6E-34 246.9 29.0 261 114-464 129-410 (430)
115 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-30 6.7E-35 247.9 24.1 259 114-500 16-294 (588)
116 4gq1_A NUP37; propeller, trans 100.0 3.5E-30 1.2E-34 245.9 22.3 266 31-414 88-388 (393)
117 3bws_A Protein LP49; two-domai 100.0 1.9E-28 6.5E-33 237.6 32.1 280 31-500 121-429 (433)
118 3jro_A Fusion protein of prote 100.0 7.4E-29 2.5E-33 256.3 28.2 251 95-463 3-284 (753)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.8E-28 2.3E-32 234.7 30.0 259 30-416 100-392 (450)
120 2w18_A PALB2, fancn, partner a 100.0 2.2E-27 7.4E-32 213.2 30.6 274 34-413 41-355 (356)
121 1l0q_A Surface layer protein; 100.0 8.3E-27 2.8E-31 222.9 35.3 310 29-492 28-366 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 3.9E-28 1.3E-32 227.6 23.9 262 125-498 46-328 (343)
123 1l0q_A Surface layer protein; 100.0 1.5E-26 5E-31 221.2 34.8 262 45-463 3-274 (391)
124 1nir_A Nitrite reductase; hemo 100.0 2.3E-26 7.9E-31 227.4 34.8 321 39-501 144-512 (543)
125 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-26 4E-31 240.8 32.2 333 32-500 36-456 (741)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-26 3.6E-31 223.1 25.5 301 32-486 62-410 (415)
127 3bws_A Protein LP49; two-domai 100.0 1.2E-25 4E-30 218.0 30.5 239 30-415 167-432 (433)
128 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-24 4.6E-29 204.2 31.0 269 95-500 13-333 (355)
129 1k32_A Tricorn protease; prote 99.9 7.9E-25 2.7E-29 234.7 32.2 366 29-493 49-491 (1045)
130 2w18_A PALB2, fancn, partner a 99.9 6.6E-25 2.3E-29 197.1 25.3 186 228-461 143-354 (356)
131 1xfd_A DIP, dipeptidyl aminope 99.9 3.5E-25 1.2E-29 229.0 25.3 330 33-492 17-428 (723)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-24 4.6E-29 208.4 27.0 243 44-438 143-408 (415)
133 1k32_A Tricorn protease; prote 99.9 9.4E-24 3.2E-28 226.3 33.0 363 30-500 201-634 (1045)
134 2z3z_A Dipeptidyl aminopeptida 99.9 9.7E-24 3.3E-28 217.6 27.9 280 114-500 82-432 (706)
135 2ojh_A Uncharacterized protein 99.9 2.5E-23 8.7E-28 190.3 23.9 226 49-418 17-261 (297)
136 3u4y_A Uncharacterized protein 99.9 7.4E-22 2.5E-26 183.9 31.8 237 38-417 3-254 (331)
137 3vgz_A Uncharacterized protein 99.9 9.5E-22 3.2E-26 184.9 31.4 254 30-417 38-305 (353)
138 1nir_A Nitrite reductase; hemo 99.9 4.9E-22 1.7E-26 196.5 30.4 293 34-463 180-513 (543)
139 2ecf_A Dipeptidyl peptidase IV 99.9 1E-21 3.6E-26 203.6 29.9 305 114-500 37-410 (741)
140 1ri6_A Putative isomerase YBHE 99.9 9.3E-21 3.2E-25 177.2 32.4 279 29-437 34-332 (343)
141 1ri6_A Putative isomerase YBHE 99.9 4.7E-21 1.6E-25 179.2 28.3 276 114-487 38-336 (343)
142 1z68_A Fibroblast activation p 99.9 5E-22 1.7E-26 205.1 23.7 318 37-492 20-428 (719)
143 3hfq_A Uncharacterized protein 99.9 1E-20 3.4E-25 177.5 30.2 267 29-414 36-316 (347)
144 2z3z_A Dipeptidyl aminopeptida 99.9 4.2E-21 1.4E-25 197.9 30.1 280 33-443 82-414 (706)
145 2ojh_A Uncharacterized protein 99.9 2.6E-21 8.8E-26 176.9 24.3 235 28-406 37-293 (297)
146 3u4y_A Uncharacterized protein 99.9 2.6E-20 8.9E-25 173.4 30.9 253 32-416 40-305 (331)
147 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-21 8.1E-26 200.3 26.1 289 114-500 17-390 (723)
148 3o4h_A Acylamino-acid-releasin 99.9 2.5E-20 8.7E-25 187.4 27.2 257 114-493 22-301 (582)
149 3o4h_A Acylamino-acid-releasin 99.9 7.2E-21 2.5E-25 191.4 23.2 271 32-460 21-309 (582)
150 3hfq_A Uncharacterized protein 99.9 2.2E-19 7.6E-24 168.3 31.8 216 114-415 40-271 (347)
151 4a5s_A Dipeptidyl peptidase 4 99.9 8.9E-20 3E-24 188.4 30.2 325 33-494 17-436 (740)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-19 1.2E-23 171.3 32.1 229 29-356 89-332 (434)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-19 7.9E-24 172.6 30.4 229 32-357 36-278 (434)
154 1pby_B Quinohemoprotein amine 99.9 5.4E-20 1.9E-24 171.6 23.7 233 220-501 35-308 (337)
155 1pby_B Quinohemoprotein amine 99.9 2.7E-19 9.4E-24 166.8 27.3 282 45-426 2-320 (337)
156 3scy_A Hypothetical bacterial 99.9 1.7E-18 5.8E-23 163.2 32.1 268 31-414 48-336 (361)
157 1jmx_B Amine dehydrogenase; ox 99.8 9.6E-20 3.3E-24 170.8 22.3 260 37-424 4-333 (349)
158 3scy_A Hypothetical bacterial 99.8 3.7E-18 1.3E-22 160.9 32.8 212 114-414 50-290 (361)
159 3vgz_A Uncharacterized protein 99.8 2E-18 7E-23 162.0 29.0 241 31-406 87-335 (353)
160 3pe7_A Oligogalacturonate lyas 99.8 2.2E-19 7.7E-24 171.0 21.7 238 38-416 41-330 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-18 5.9E-23 163.3 25.6 259 33-416 40-342 (365)
162 1z68_A Fibroblast activation p 99.8 1.5E-18 5.1E-23 179.2 21.5 271 117-493 19-375 (719)
163 3azo_A Aminopeptidase; POP fam 99.8 3.1E-17 1E-21 167.7 26.2 295 30-460 21-363 (662)
164 1q7f_A NHL, brain tumor CG1071 99.8 3.7E-16 1.3E-20 142.0 29.6 261 12-416 11-281 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-16 5.4E-21 164.1 30.5 284 114-493 17-382 (740)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.2E-16 1.1E-20 147.7 29.5 259 114-463 40-340 (365)
167 1jmx_B Amine dehydrogenase; ox 99.8 1E-16 3.6E-21 150.0 24.6 292 119-501 5-323 (349)
168 3c5m_A Oligogalacturonate lyas 99.7 2.8E-16 9.6E-21 149.9 22.6 298 31-416 34-385 (396)
169 2dg1_A DRP35, lactonase; beta 99.7 2.5E-15 8.5E-20 139.8 28.5 244 33-414 6-262 (333)
170 3fvz_A Peptidyl-glycine alpha- 99.7 2.2E-15 7.7E-20 139.6 26.8 259 33-415 24-322 (329)
171 2oiz_A Aromatic amine dehydrog 99.7 8.2E-15 2.8E-19 137.4 28.9 305 43-486 14-360 (361)
172 3pe7_A Oligogalacturonate lyas 99.7 4.3E-16 1.5E-20 148.2 20.5 170 216-414 185-381 (388)
173 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.2E-20 153.3 25.9 210 227-489 87-350 (662)
174 2oiz_A Aromatic amine dehydrog 99.7 9.3E-15 3.2E-19 137.1 26.1 275 37-437 54-357 (361)
175 1q7f_A NHL, brain tumor CG1071 99.7 9E-14 3.1E-18 126.2 30.6 243 114-500 30-277 (286)
176 1qks_A Cytochrome CD1 nitrite 99.7 6E-13 2.1E-17 131.2 37.6 318 41-500 164-535 (567)
177 3e5z_A Putative gluconolactona 99.7 1.6E-14 5.4E-19 131.9 24.1 240 31-416 26-287 (296)
178 3c5m_A Oligogalacturonate lyas 99.7 1.7E-15 5.7E-20 144.5 17.5 263 116-493 38-370 (396)
179 2gop_A Trilobed protease; beta 99.7 9.7E-14 3.3E-18 129.7 27.7 257 30-462 12-329 (347)
180 3fvz_A Peptidyl-glycine alpha- 99.6 1.7E-13 5.9E-18 126.9 27.3 242 114-417 24-279 (329)
181 2bkl_A Prolyl endopeptidase; m 99.6 2.2E-14 7.6E-19 147.0 23.1 248 31-417 119-399 (695)
182 2z2n_A Virginiamycin B lyase; 99.6 4.8E-12 1.7E-16 115.3 36.4 238 32-413 14-253 (299)
183 2xdw_A Prolyl endopeptidase; a 99.6 1E-13 3.4E-18 142.6 27.8 249 31-417 123-416 (710)
184 1rwi_B Serine/threonine-protei 99.6 1.1E-13 3.7E-18 124.4 24.8 237 34-416 25-265 (270)
185 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.6E-18 140.4 28.1 239 216-500 122-411 (710)
186 2gop_A Trilobed protease; beta 99.6 1.2E-13 4.2E-18 129.0 24.1 259 33-428 59-341 (347)
187 2dg1_A DRP35, lactonase; beta 99.6 6.8E-13 2.3E-17 123.2 28.7 244 31-405 43-300 (333)
188 3e5z_A Putative gluconolactona 99.6 6.6E-13 2.2E-17 121.1 25.9 235 216-500 25-283 (296)
189 3no2_A Uncharacterized protein 99.6 1.4E-12 4.9E-17 117.0 26.4 248 43-426 4-262 (276)
190 2bkl_A Prolyl endopeptidase; m 99.6 3.8E-13 1.3E-17 137.8 24.2 238 215-500 117-394 (695)
191 1qks_A Cytochrome CD1 nitrite 99.6 3.9E-11 1.3E-15 118.3 36.4 320 31-425 195-547 (567)
192 3dsm_A Uncharacterized protein 99.5 3.4E-12 1.2E-16 118.0 26.8 223 115-443 45-281 (328)
193 2qc5_A Streptogramin B lactona 99.5 1.5E-10 5.1E-15 105.4 35.0 239 32-414 19-259 (300)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.6E-12 3.3E-16 114.3 26.7 247 33-416 18-300 (314)
195 3no2_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 110.9 25.7 198 126-425 4-204 (276)
196 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-12 7.5E-17 133.2 23.7 244 33-417 163-443 (741)
197 3dsm_A Uncharacterized protein 99.5 1.6E-11 5.3E-16 113.5 25.8 233 219-501 44-300 (328)
198 1rwi_B Serine/threonine-protei 99.5 4.3E-11 1.5E-15 107.3 26.9 197 115-416 25-223 (270)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8.3E-11 2.8E-15 108.0 29.4 205 114-417 18-258 (314)
200 1yr2_A Prolyl oligopeptidase; 99.5 9.7E-12 3.3E-16 128.3 24.1 236 216-500 160-438 (741)
201 3g4e_A Regucalcin; six bladed 99.4 1.2E-10 4.2E-15 105.9 26.0 232 34-404 14-261 (297)
202 2mad_H Methylamine dehydrogena 99.4 6.5E-10 2.2E-14 104.1 31.5 256 37-419 70-354 (373)
203 3hrp_A Uncharacterized protein 99.4 3.7E-10 1.3E-14 107.3 28.6 269 33-414 131-409 (409)
204 2z2n_A Virginiamycin B lyase; 99.4 1.2E-09 4E-14 99.4 30.2 239 32-416 56-296 (299)
205 3sjl_D Methylamine dehydrogena 99.4 3.6E-10 1.2E-14 104.5 26.6 306 38-484 38-384 (386)
206 3dr2_A Exported gluconolactona 99.4 2E-10 6.9E-15 104.9 24.0 235 30-409 42-301 (305)
207 2mad_H Methylamine dehydrogena 99.4 3.9E-09 1.3E-13 98.9 32.4 253 39-418 27-310 (373)
208 1xip_A Nucleoporin NUP159; bet 99.3 2.9E-11 9.9E-16 112.3 16.1 192 33-344 38-230 (388)
209 3g4e_A Regucalcin; six bladed 99.3 3.2E-09 1.1E-13 96.5 29.0 179 219-436 54-249 (297)
210 3iuj_A Prolyl endopeptidase; h 99.3 2.2E-10 7.7E-15 117.0 23.3 160 217-417 232-407 (693)
211 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.5E-14 99.5 26.0 231 218-500 44-303 (305)
212 1xip_A Nucleoporin NUP159; bet 99.3 1.8E-10 6.1E-15 107.0 19.9 193 114-403 38-232 (388)
213 3sjl_D Methylamine dehydrogena 99.3 2.3E-09 7.9E-14 99.1 27.1 261 37-425 82-372 (386)
214 2qe8_A Uncharacterized protein 99.3 8.3E-10 2.8E-14 102.6 23.5 275 33-460 17-317 (343)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 4.3E-09 1.5E-13 97.0 27.7 228 34-404 50-291 (326)
216 2ghs_A AGR_C_1268P; regucalcin 99.3 4.8E-09 1.7E-13 96.7 27.3 155 219-414 90-259 (326)
217 2qc5_A Streptogramin B lactona 99.3 1.2E-08 4.2E-13 92.6 29.7 237 32-414 61-299 (300)
218 3c75_H MADH, methylamine dehyd 99.2 7.8E-09 2.7E-13 97.4 28.0 297 42-423 82-409 (426)
219 3hrp_A Uncharacterized protein 99.2 1.3E-08 4.5E-13 96.7 29.2 215 114-416 131-355 (409)
220 2ece_A 462AA long hypothetical 99.2 4E-08 1.4E-12 91.5 28.0 170 223-403 192-399 (462)
221 2qe8_A Uncharacterized protein 99.1 2.4E-08 8.2E-13 92.7 22.9 222 216-492 64-309 (343)
222 1mda_H Methylamine dehydrogena 99.1 1.2E-08 4E-13 94.6 19.7 77 333-427 269-357 (368)
223 3c75_H MADH, methylamine dehyd 99.1 1.3E-07 4.4E-12 89.1 27.0 234 223-501 122-400 (426)
224 3iuj_A Prolyl endopeptidase; h 99.1 1.1E-08 3.9E-13 104.4 21.4 237 215-500 125-402 (693)
225 1npe_A Nidogen, entactin; glyc 99.0 1.3E-06 4.6E-11 77.7 31.6 175 219-438 79-261 (267)
226 1kb0_A Quinohemoprotein alcoho 99.0 1.9E-07 6.5E-12 94.6 25.2 195 223-443 247-533 (677)
227 1yiq_A Quinohemoprotein alcoho 98.9 3.7E-07 1.3E-11 92.7 25.3 199 223-443 239-531 (689)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4.1E-06 1.4E-10 78.7 29.8 154 231-419 144-300 (376)
229 1mda_H Methylamine dehydrogena 98.9 7.6E-08 2.6E-12 89.1 16.4 254 37-371 69-359 (368)
230 4a2l_A BT_4663, two-component 98.9 5.9E-05 2E-09 78.4 40.1 247 218-500 262-523 (795)
231 2hz6_A Endoplasmic reticulum t 98.8 1.7E-09 5.8E-14 101.4 5.1 188 43-366 8-200 (369)
232 2hz6_A Endoplasmic reticulum t 98.8 1.3E-09 4.6E-14 102.1 3.5 186 126-424 8-200 (369)
233 2ece_A 462AA long hypothetical 98.8 4.9E-06 1.7E-10 77.6 26.9 170 221-416 140-353 (462)
234 1fwx_A Nitrous oxide reductase 98.8 1.8E-06 6.2E-11 83.4 24.1 184 238-457 174-410 (595)
235 1npe_A Nidogen, entactin; glyc 98.8 1.7E-05 5.7E-10 70.5 28.8 220 33-397 36-263 (267)
236 3hxj_A Pyrrolo-quinoline quino 98.7 7.7E-07 2.6E-11 81.9 19.6 211 230-499 107-320 (330)
237 4a2l_A BT_4663, two-component 98.7 0.00018 6.2E-09 74.7 38.2 245 218-500 309-568 (795)
238 1fwx_A Nitrous oxide reductase 98.7 7.5E-06 2.6E-10 79.2 24.7 148 227-416 98-309 (595)
239 2fp8_A Strictosidine synthase; 98.7 5.2E-06 1.8E-10 76.1 22.9 157 220-416 127-314 (322)
240 1yiq_A Quinohemoprotein alcoho 98.7 1.2E-05 4E-10 81.7 26.9 200 272-492 239-537 (689)
241 2iwa_A Glutamine cyclotransfer 98.6 1.9E-05 6.4E-10 69.0 24.0 207 34-357 22-237 (266)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.6 2.2E-05 7.5E-10 73.7 25.7 152 231-425 189-346 (376)
243 2iwa_A Glutamine cyclotransfer 98.6 3.9E-05 1.3E-09 67.0 24.8 160 219-418 21-184 (266)
244 2p4o_A Hypothetical protein; p 98.6 9.4E-05 3.2E-09 67.1 28.1 238 33-406 32-279 (306)
245 3nol_A Glutamine cyclotransfer 98.5 9.2E-05 3.2E-09 63.9 24.5 169 208-418 32-204 (262)
246 1kb0_A Quinohemoprotein alcoho 98.5 4.4E-05 1.5E-09 77.3 25.8 92 290-414 457-566 (677)
247 2p4o_A Hypothetical protein; p 98.5 0.00027 9.4E-09 64.0 28.7 161 220-414 73-241 (306)
248 3hxj_A Pyrrolo-quinoline quino 98.5 3.3E-06 1.1E-10 77.6 16.1 218 220-500 61-281 (330)
249 3v65_B Low-density lipoprotein 98.5 0.00046 1.6E-08 64.7 30.9 172 221-435 161-337 (386)
250 1kv9_A Type II quinohemoprotei 98.5 4E-05 1.4E-09 77.6 25.1 184 223-426 234-498 (668)
251 3v64_C Agrin; beta propeller, 98.5 0.00076 2.6E-08 62.2 31.7 173 220-435 117-294 (349)
252 3nok_A Glutaminyl cyclase; bet 98.5 5.1E-05 1.7E-09 65.5 21.2 168 208-418 44-213 (268)
253 3nol_A Glutamine cyclotransfer 98.5 6.1E-05 2.1E-09 65.0 21.8 196 114-404 43-244 (262)
254 3mbr_X Glutamine cyclotransfer 98.4 0.00014 5E-09 62.1 23.0 209 90-404 8-223 (243)
255 2xe4_A Oligopeptidase B; hydro 98.4 0.00029 9.9E-09 72.4 29.8 32 34-65 175-213 (751)
256 3mbr_X Glutamine cyclotransfer 98.4 0.00029 9.9E-09 60.2 24.7 169 208-418 10-182 (243)
257 3v9f_A Two-component system se 98.4 0.001 3.5E-08 68.9 33.9 248 218-500 257-521 (781)
258 3qqz_A Putative uncharacterize 98.4 0.00085 2.9E-08 58.2 29.1 219 114-413 27-251 (255)
259 3nok_A Glutaminyl cyclase; bet 98.4 0.00012 4.2E-09 63.1 21.5 196 114-402 55-253 (268)
260 3tc9_A Hypothetical hydrolase; 98.4 0.00023 7.8E-09 67.8 25.4 183 221-414 228-429 (430)
261 4hw6_A Hypothetical protein, I 98.3 0.0006 2.1E-08 64.9 26.8 182 220-414 229-432 (433)
262 2ad6_A Methanol dehydrogenase 98.3 0.00024 8.2E-09 70.3 24.5 60 348-425 444-503 (571)
263 3v9f_A Two-component system se 98.3 0.0063 2.1E-07 63.0 37.0 239 218-500 312-565 (781)
264 3qqz_A Putative uncharacterize 98.2 0.0008 2.7E-08 58.4 23.2 208 263-500 22-250 (255)
265 1k3i_A Galactose oxidase precu 98.2 0.00063 2.2E-08 68.8 25.7 73 221-301 245-325 (656)
266 2fp8_A Strictosidine synthase; 98.2 0.00063 2.2E-08 62.1 22.9 163 219-415 19-216 (322)
267 2xe4_A Oligopeptidase B; hydro 98.1 0.00027 9.2E-09 72.7 21.5 114 220-357 175-304 (751)
268 1kv9_A Type II quinohemoprotei 98.1 0.0015 5.2E-08 66.0 26.4 84 272-365 234-340 (668)
269 1k3i_A Galactose oxidase precu 98.1 0.00036 1.2E-08 70.6 21.5 76 37-151 190-279 (656)
270 1w6s_A Methanol dehydrogenase 98.1 0.0013 4.4E-08 65.1 24.8 30 395-425 483-512 (599)
271 3v65_B Low-density lipoprotein 98.1 0.0035 1.2E-07 58.7 26.3 121 219-366 202-326 (386)
272 1flg_A Protein (quinoprotein e 98.0 0.0013 4.6E-08 65.0 23.7 61 348-426 466-526 (582)
273 3v64_C Agrin; beta propeller, 98.0 0.0086 2.9E-07 55.1 28.8 121 219-366 159-283 (349)
274 3ei3_A DNA damage-binding prot 98.0 0.026 8.7E-07 60.5 35.5 121 281-436 845-978 (1158)
275 1ijq_A LDL receptor, low-densi 98.0 0.008 2.7E-07 54.5 33.2 159 220-419 78-242 (316)
276 2xbg_A YCF48-like protein; pho 98.0 0.0091 3.1E-07 54.4 31.3 157 220-416 123-279 (327)
277 3p5b_L Low density lipoprotein 97.9 0.016 5.5E-07 54.4 32.1 159 219-419 159-324 (400)
278 3kya_A Putative phosphatase; s 97.9 0.015 5.1E-07 55.6 26.5 118 219-356 186-340 (496)
279 3kya_A Putative phosphatase; s 97.8 0.016 5.6E-07 55.3 26.5 185 222-416 250-476 (496)
280 3m0c_C LDL receptor, low-densi 97.8 0.042 1.4E-06 56.2 32.3 159 219-419 471-636 (791)
281 1ijq_A LDL receptor, low-densi 97.8 0.019 6.7E-07 51.9 27.5 122 219-365 120-245 (316)
282 3tc9_A Hypothetical hydrolase; 97.8 0.0067 2.3E-07 57.6 23.1 155 219-415 137-301 (430)
283 3amr_A 3-phytase; beta-propell 97.7 0.015 5.1E-07 52.5 23.0 160 238-424 98-272 (355)
284 4hw6_A Hypothetical protein, I 97.7 0.019 6.7E-07 54.4 25.4 170 219-413 182-372 (433)
285 2ad6_A Methanol dehydrogenase 97.7 0.053 1.8E-06 53.6 28.8 27 127-153 115-141 (571)
286 3sov_A LRP-6, low-density lipo 97.6 0.036 1.2E-06 50.1 29.1 157 220-419 80-242 (318)
287 3sov_A LRP-6, low-density lipo 97.6 0.041 1.4E-06 49.7 26.0 121 219-366 122-246 (318)
288 3sre_A PON1, serum paraoxonase 97.6 0.046 1.6E-06 49.9 24.6 167 220-415 51-252 (355)
289 3p5b_L Low density lipoprotein 97.6 0.054 1.9E-06 50.8 29.9 122 219-366 202-328 (400)
290 3m0c_C LDL receptor, low-densi 97.6 0.079 2.7E-06 54.2 28.1 73 219-300 514-590 (791)
291 2p9w_A MAL S 1 allergenic prot 97.5 0.033 1.1E-06 49.8 22.2 123 220-357 64-215 (334)
292 4a0p_A LRP6, LRP-6, low-densit 97.5 0.089 3.1E-06 52.5 33.4 154 220-418 81-240 (628)
293 1n7d_A LDL receptor, low-densi 97.5 0.0012 4E-08 67.0 13.9 156 221-417 455-616 (699)
294 3a9g_A Putative uncharacterize 97.5 0.039 1.3E-06 50.8 23.0 27 33-60 29-55 (354)
295 2ism_A Putative oxidoreductase 97.4 0.076 2.6E-06 48.8 26.2 27 33-60 31-57 (352)
296 2p9w_A MAL S 1 allergenic prot 97.4 0.019 6.3E-07 51.4 18.5 178 219-415 13-215 (334)
297 2xbg_A YCF48-like protein; pho 97.4 0.075 2.6E-06 48.3 30.3 157 218-412 162-319 (327)
298 1n7d_A LDL receptor, low-densi 97.4 0.0012 4.2E-08 66.9 12.4 119 221-365 498-621 (699)
299 2ism_A Putative oxidoreductase 97.3 0.1 3.5E-06 47.9 24.5 114 219-345 31-152 (352)
300 1w6s_A Methanol dehydrogenase 97.3 0.073 2.5E-06 52.7 23.6 32 338-370 483-515 (599)
301 3s94_A LRP-6, low-density lipo 97.3 0.18 6.1E-06 50.2 39.0 203 32-301 39-245 (619)
302 1flg_A Protein (quinoprotein e 97.2 0.2 7E-06 49.4 32.3 27 127-153 117-143 (582)
303 3sre_A PON1, serum paraoxonase 97.2 0.14 4.6E-06 46.8 24.6 153 220-413 113-296 (355)
304 3s94_A LRP-6, low-density lipo 96.9 0.38 1.3E-05 47.8 27.0 155 219-418 84-246 (619)
305 4a0p_A LRP6, LRP-6, low-densit 96.9 0.4 1.4E-05 47.8 41.1 199 33-300 37-238 (628)
306 3amr_A 3-phytase; beta-propell 96.8 0.28 9.5E-06 44.3 21.8 148 229-414 39-209 (355)
307 3pbp_A Nucleoporin NUP82; beta 96.7 0.29 9.9E-06 45.3 19.8 164 226-411 28-208 (452)
308 2g8s_A Glucose/sorbosone dehyd 96.6 0.45 1.5E-05 43.6 25.8 30 33-62 18-47 (353)
309 3a9g_A Putative uncharacterize 96.6 0.14 4.9E-06 46.9 17.4 113 219-345 29-152 (354)
310 3s25_A Hypothetical 7-bladed b 96.4 0.49 1.7E-05 42.1 20.7 136 225-416 110-256 (302)
311 1cru_A Protein (soluble quinop 96.4 0.39 1.3E-05 45.7 19.7 117 219-346 27-162 (454)
312 3ei3_A DNA damage-binding prot 96.2 1.8 6.1E-05 46.5 37.7 39 114-152 554-597 (1158)
313 2g8s_A Glucose/sorbosone dehyd 96.2 0.28 9.7E-06 44.9 17.1 118 219-345 18-147 (353)
314 2vpj_A Kelch-like protein 12; 96.1 0.73 2.5E-05 40.9 20.7 106 278-417 159-280 (301)
315 3pbp_A Nucleoporin NUP82; beta 96.0 0.93 3.2E-05 42.0 21.8 119 276-418 29-161 (452)
316 2xzh_A Clathrin heavy chain 1; 96.0 0.82 2.8E-05 40.7 28.0 166 219-416 152-333 (365)
317 2xzh_A Clathrin heavy chain 1; 96.0 0.83 2.8E-05 40.7 19.9 151 238-433 48-205 (365)
318 1tl2_A L10, protein (tachylect 95.6 0.57 1.9E-05 39.1 14.5 67 219-291 135-202 (236)
319 3das_A Putative oxidoreductase 95.6 1.3 4.4E-05 40.2 28.7 117 218-345 31-157 (347)
320 1tl2_A L10, protein (tachylect 95.3 0.19 6.5E-06 41.9 10.7 116 219-352 41-158 (236)
321 1bpo_A Protein (clathrin); cla 95.3 1.9 6.5E-05 40.1 29.6 189 193-416 124-332 (494)
322 2xn4_A Kelch-like protein 2; s 94.5 2.4 8.3E-05 37.4 21.6 22 395-416 251-277 (302)
323 2uvk_A YJHT; unknown function, 94.2 3.1 0.00011 37.8 21.5 29 393-421 314-348 (357)
324 3s25_A Hypothetical 7-bladed b 94.1 2.9 0.0001 37.1 21.1 135 228-417 23-178 (302)
325 1cru_A Protein (soluble quinop 94.1 4.1 0.00014 38.6 31.4 32 33-64 27-58 (454)
326 1xi4_A Clathrin heavy chain; a 93.9 4.8 0.00016 43.6 19.5 136 218-370 150-301 (1630)
327 3das_A Putative oxidoreductase 93.7 3.9 0.00013 37.0 27.6 32 33-64 32-63 (347)
328 3ii7_A Kelch-like protein 7; p 92.8 4.9 0.00017 35.5 24.3 24 395-418 247-275 (306)
329 1zgk_A Kelch-like ECH-associat 91.9 6.3 0.00022 34.9 22.5 147 229-417 121-289 (308)
330 1bpo_A Protein (clathrin); cla 91.5 8.9 0.0003 35.7 24.7 154 237-435 46-206 (494)
331 2wg3_C Hedgehog-interacting pr 90.6 12 0.0004 35.5 20.2 119 219-347 14-158 (463)
332 2be1_A Serine/threonine-protei 90.3 7.9 0.00027 34.8 14.2 22 45-66 11-32 (339)
333 3ii7_A Kelch-like protein 7; p 88.1 13 0.00045 32.6 19.9 22 43-64 55-80 (306)
334 2xn4_A Kelch-like protein 2; s 88.1 13 0.00045 32.6 15.5 63 229-300 204-277 (302)
335 4asc_A Kelch repeat and BTB do 87.5 15 0.0005 32.5 22.0 23 277-300 147-175 (315)
336 1xi4_A Clathrin heavy chain; a 86.4 15 0.00051 40.0 14.9 154 237-435 46-206 (1630)
337 3ott_A Two-component system se 86.3 31 0.0011 35.1 35.2 170 219-417 232-403 (758)
338 2vpj_A Kelch-like protein 12; 84.9 19 0.00065 31.4 20.0 64 229-301 159-233 (301)
339 1zgk_A Kelch-like ECH-associat 83.3 23 0.00079 31.1 18.2 63 229-300 168-241 (308)
340 3sbq_A Nitrous-oxide reductase 81.7 2.5 8.4E-05 40.7 6.2 79 220-300 324-409 (638)
341 3sbq_A Nitrous-oxide reductase 78.9 11 0.00036 36.4 9.5 73 327-415 322-408 (638)
342 2woz_A Kelch repeat and BTB do 77.9 36 0.0012 29.9 21.8 23 277-300 157-185 (318)
343 2zwa_A Leucine carboxyl methyl 76.4 67 0.0023 32.3 20.2 156 229-418 451-638 (695)
344 3qhy_B Beta-lactamase inhibito 75.1 41 0.0014 29.2 20.4 216 220-500 25-243 (282)
345 4gq2_M Nucleoporin NUP120; bet 74.8 57 0.0019 34.2 14.8 35 268-303 236-270 (950)
346 4asc_A Kelch repeat and BTB do 73.1 48 0.0016 29.1 19.9 23 395-417 196-223 (315)
347 2zwa_A Leucine carboxyl methyl 72.6 83 0.0028 31.6 16.3 26 126-151 500-527 (695)
348 3f7f_A Nucleoporin NUP120; nuc 70.9 66 0.0022 32.2 13.1 38 114-155 222-259 (729)
349 3ott_A Two-component system se 70.0 97 0.0033 31.3 37.7 172 219-416 324-503 (758)
350 2be1_A Serine/threonine-protei 66.1 17 0.00059 32.6 7.5 112 281-424 11-138 (339)
351 2wg3_C Hedgehog-interacting pr 66.1 90 0.0031 29.4 26.2 30 33-62 14-44 (463)
352 3qhy_B Beta-lactamase inhibito 62.5 77 0.0026 27.4 23.2 144 220-415 103-246 (282)
353 4gq2_M Nucleoporin NUP120; bet 59.5 1.8E+02 0.006 30.6 15.4 40 219-259 236-276 (950)
354 2uvk_A YJHT; unknown function, 58.4 1E+02 0.0035 27.5 21.0 21 126-146 19-40 (357)
355 3q6k_A 43.2 kDa salivary prote 52.0 1.4E+02 0.0048 27.2 22.7 158 240-415 124-306 (381)
356 2woz_A Kelch repeat and BTB do 49.4 1.3E+02 0.0045 26.1 20.0 63 229-300 158-232 (318)
357 4a9v_A PHOX; hydrolase, beta-p 46.3 65 0.0022 31.3 8.1 61 328-403 476-549 (592)
358 4hvt_A Ritya.17583.B, post-pro 43.9 2.6E+02 0.009 28.0 24.0 33 34-66 130-168 (711)
359 4fhn_B Nucleoporin NUP120; pro 40.4 94 0.0032 33.4 9.2 32 388-419 241-272 (1139)
360 3f7f_A Nucleoporin NUP120; nuc 37.5 35 0.0012 34.1 4.9 33 32-66 221-253 (729)
361 3zwu_A Alkaline phosphatase PH 36.8 88 0.003 30.6 7.5 59 329-402 477-548 (592)
362 2loj_A Putative cytoplasmic pr 32.6 29 0.00099 21.9 2.2 37 12-49 26-62 (63)
363 3zwu_A Alkaline phosphatase PH 32.4 1.1E+02 0.0037 29.9 7.4 60 269-345 477-548 (592)
364 4fhn_B Nucleoporin NUP120; pro 30.1 48 0.0016 35.7 4.9 38 115-154 239-276 (1139)
365 2jra_A Protein RPA2121; domain 26.9 39 0.0013 21.6 2.1 36 13-49 31-66 (67)
366 4a9v_A PHOX; hydrolase, beta-p 25.3 3.4E+02 0.012 26.4 9.2 59 219-286 476-548 (592)
367 3b7f_A Glycosyl hydrolase, BNR 20.7 4.6E+02 0.016 23.5 27.4 70 219-290 177-254 (394)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.3e-49 Score=382.36 Aligned_cols=435 Identities=45% Similarity=0.812 Sum_probs=320.8
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
.+..|++.|.|++. .++++|.+.|++++|+|+|++||+|+.||.|+||++.+++.. ......
T Consensus 8 ~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~----------------~~~~~~ 69 (447)
T 3dw8_B 8 NDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI----------------QSHSRG 69 (447)
T ss_dssp CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCC
T ss_pred cceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC----------------Cccccc
Confidence 55689999999973 556889999999999999999999999999999999977531 112234
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
+++....+++|.++|+|++++.+++.|++++|+ |++ .+|++++.|++|++||+.++...... ....
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~--------- 137 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK--------- 137 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC---------
T ss_pred ceeEecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCcce-eccc---------
Confidence 667788999999999999999999999999998 555 79999999999999999876643221 0000
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECC
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~ 247 (501)
...+............ ...+-.........+.+.+..+|...|.+++|+|++++|++|.|+.|++||++
T Consensus 138 ~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~ 206 (447)
T 3dw8_B 138 EEDGRYRDPTTVTTLR-----------VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLE 206 (447)
T ss_dssp --------CCCCCSCC-----------CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETT
T ss_pred CccccccCcccccceE-----------eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECC
Confidence 0001000000000000 00001111112234555665789999999999999999999999999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
..+..+..+..++..+.+|...|.+++|+|+++++|++++.||.|++||+++++........+.. ...+.....+.+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 285 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSEII 285 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC-C-----CCHHHHHT
T ss_pred CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc-CCCccccccccccC
Confidence 66666766666666788999999999999997689999999999999999988754433456665 22233334455666
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..|.+++|+|+|++|++++++.|++||+++.++++..+.+|......++..+..++++++..++|+|++++|++|+.||.
T Consensus 286 ~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 286 SSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp TCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred ceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 79999999999999999877999999998657888999999877666666677777776678999999999999999999
Q ss_pred EEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCE
Q 010801 408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~ 487 (501)
|++||+.+++. ..+.++..+.......+. .+ +..++.... ........++...|.+++|||++++
T Consensus 366 v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~ 430 (447)
T 3dw8_B 366 FRMFDRNTKRD--ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENI 430 (447)
T ss_dssp EEEEETTTCCE--EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred EEEEEcCCCcc--eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCE
Confidence 99999998744 477777776654444331 11 222222211 1122234467789999999999999
Q ss_pred EEEeeCCeEEEEeC
Q 010801 488 IACANGNSLFFHYA 501 (501)
Q Consensus 488 la~~~~~~~~i~~~ 501 (501)
||+++.+++|+|++
T Consensus 431 la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 431 IAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSCEEEEEC
T ss_pred EEEEecceeeeecc
Confidence 99999999999984
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-46 Score=380.19 Aligned_cols=399 Identities=14% Similarity=0.138 Sum_probs=292.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------------~~~~~~~~~------- 103 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS------- 103 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------------eeEeecccC-------
Confidence 369999999999999999999999999999998765431 445678898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|.+++|+ |++++|++++.+ +.|++||.. +..... .-+...+....+.++...
T Consensus 104 -----~~v~~v~fs--~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l-------------~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 104 -----GPVKDISWD--SESKRIAAVGEGRERFGHVFLFDTG--TSNGNL-------------TGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp -----SCEEEEEEC--TTSCEEEEEECCSSCSEEEEETTTC--CBCBCC-------------CCCSSCEEEEEECSSSSC
T ss_pred -----CceEEEEEC--CCCCEEEEEECCCCceeEEEEeeCC--CCccee-------------cCCCCCceEEEECCCCCe
Confidence 889999998 899999998865 478888843 222211 112344556666666653
Q ss_pred -cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 -GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 -~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
++++.. ++.+++|+... .++...+ .+|...|.+++|+|++++|++| .|++|++||+.. ++....+......
T Consensus 162 ~l~s~s~--D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 162 RIISGSD--DNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLK 234 (611)
T ss_dssp EEEEEET--TSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSS
T ss_pred EEEEEeC--CCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccccc
Confidence 666554 88999999775 4555665 8999999999999999999999 999999999984 4444432111111
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc----------------------------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA---------------------------- 314 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---------------------------- 314 (501)
..+|...|.+++|+|++ ++|++++.|++|++||+++++... .+..+.
T Consensus 235 ~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp SCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred ccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 23799999999999999 999999999999999998875431 111100
Q ss_pred --ccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe-eccccccccc---------------
Q 010801 315 --ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKL--------------- 375 (501)
Q Consensus 315 --~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~--------------- 375 (501)
........+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++....+ .+|...+..+
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 00001224568999999999999999999986 59999999875 4433222 1121110000
Q ss_pred ----cccC------------------------CCC-----------------------CcceeeEEEEcCCCcEEEEEeC
Q 010801 376 ----CDLY------------------------NND-----------------------SIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 376 ----~~~~------------------------~~~-----------------------~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++.. .+. ....+.+++|+|||++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 0000 000 0112468999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC---Cccc-cc-ccCCCeEE
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG---HHEL-SY-NLSSKLLH 478 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~---~~~~-~~-~~~~~i~~ 478 (501)
|++|++||+.++........+|...|.+++|+| ++++ |++++.|+. ++|+... .... .. .|...|++
T Consensus 469 D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541 (611)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred CCeEEEEEccCCceeeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE
Confidence 999999999876332223378999999999999 7888 999999999 9995542 2221 22 38999999
Q ss_pred EEEccCCCEEEEeeCC-eEEEEeC
Q 010801 479 LAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
++|+|||++||+++.| .+++|+.
T Consensus 542 v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 542 VSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEECCCcEEEEEC
Confidence 9999999999999955 5999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.4e-44 Score=359.29 Aligned_cols=354 Identities=19% Similarity=0.242 Sum_probs=292.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|+|++|++++.|+.|++|+.... ....+.+|.
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~~~-------- 262 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------- 262 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------------------EEEEECCCS--------
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------------EEEEEecCC--------
Confidence 58899999999999999999999999999995432 446788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|++++|+ |+++.+++++.|+.|++|+..... ...... +...+....+.++...++.+.
T Consensus 263 ----~~v~~v~~~--~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~-------------h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 263 ----SSVNGVAFR--PDGQTIASASDDKTVKLWNRNGQL-LQTLTG-------------HSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCE-EEEECC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred ----CCEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCcE-EEEEec-------------CCCCeEEEEECCCCCEEEEEe
Confidence 889999997 899999999999999999976443 322211 123445556667777776665
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. ++.+++|+.... .+..+ .+|...|.+++|+|+++.++++ .|+.|++||.. . +.+.. +.+|..
T Consensus 323 ~--d~~i~~w~~~~~----~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~-------~~~~~~ 386 (577)
T 2ymu_A 323 D--DKTVKLWNRNGQ----HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQT-------LTGHSS 386 (577)
T ss_dssp T--TSCEEEEETTSC----EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEE-------EECCSS
T ss_pred C--CCeEEEEeCCCC----eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEE-------ecCCCC
Confidence 3 889999998743 33444 7899999999999999999999 99999999976 3 33332 567899
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.|+.|++||... +.. ..+ .+|...|.+++|+||+++|++++ |
T Consensus 387 ~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~~----~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 387 SVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp CEEEEEECTTS-SCEEEEETTSEEEEECTTC-CEE----EEE-------------ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEcCC
Confidence 99999999999 9999999999999999543 221 222 44678999999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||.. ++.+..+.+|...+ ++++|+|++++|++++.|+.|++||.. + .....+.+|.
T Consensus 448 ~~v~~w~~~--~~~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~ 508 (577)
T 2ymu_A 448 KTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHS 508 (577)
T ss_dssp SEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCS
T ss_pred CEEEEEECC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCC
Confidence 999999974 77888888888765 799999999999999999999999964 4 4558899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..|.+++|+| ++++ |++++.|+. ++|+.. +.+....+|...|++++|+||+++|++++.|+ +++|+
T Consensus 509 ~~v~~l~~s~--dg~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 509 SSVRGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECT--TSSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEcC--CCCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999998 7888 999999999 999544 44556678999999999999999999998654 99996
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.3e-44 Score=360.09 Aligned_cols=390 Identities=18% Similarity=0.169 Sum_probs=292.7
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|...|++++|+|++. .||+|+.|++|++||..++ +....+.+|.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---------------------------~~~~~l~~H~----- 190 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------------------------KFKSTFGEHT----- 190 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---------------------------EEEEEECCCS-----
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---------------------------eEeeeecccc-----
Confidence 346999999999999987 5999999999999997644 3457789999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|++++|+ |++++|++++.|++|++||+.+++......... .....+.+.+..+.++++...++
T Consensus 191 -------~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~------~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 191 -------KFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------LKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTT------SSSCSSSSCEEEEEECTTSSEEE
T ss_pred -------CceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccc------ccccccCCCEEEEEECCCCCEEE
Confidence 899999998 799999999999999999999887665442100 00012345677777888888887
Q ss_pred cceeccCcceEEEeccCceeee----------------------------------------eeEeecCCcccceEEEEe
Q 010801 187 HLEWTENMATKIANVGNSVHAR----------------------------------------CQKVYPHAHDFNINSISN 226 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~ 226 (501)
++.. ++.+++||+....... +...+ .+|...|++++|
T Consensus 256 s~s~--D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~gh~~~v~~l~~ 332 (611)
T 1nr0_A 256 SASA--DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR-YGHNKAITALSS 332 (611)
T ss_dssp EEET--TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEE
T ss_pred EEeC--CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE-cCCCCCEEEEEE
Confidence 7764 8899999987543211 12223 689999999999
Q ss_pred cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
+|++++|+++ .|++|++||+.+ +..... ...+|...|.+++|++++ .+++++.|+.+++|++..+.....
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDIST-GISNRV------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-CCEEEC------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTT
T ss_pred eCCCCEEEEEeCCCcEEEEECCC-Cceeee------cccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcccccc
Confidence 9999999999 999999999994 444332 136789999999999765 688999999999999876532210
Q ss_pred ccc--eeecc----cccCCC-----------------cceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 306 SAR--ILRDA----AESHGS-----------------KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 306 ~~~--~~~~~----~~~~~~-----------------~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
... .+..+ ...+.. ......|...+.+++|+|||++|++|+ |+.|++||+.. +..
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~-~~~ 482 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASV 482 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-Cce
Confidence 000 00000 000000 000113567789999999999999986 59999999974 332
Q ss_pred --eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE--EecccCcccceeecc
Q 010801 362 --VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQA 437 (501)
Q Consensus 362 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~ 437 (501)
+.. .+|...+ ++++|+|||++|++++.|++|++|++.++...... +..|...|.+++|+|
T Consensus 483 ~~~~~-~~h~~~v---------------~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp 546 (611)
T 1nr0_A 483 SEVKT-IVHPAEI---------------TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546 (611)
T ss_dssp EEEEE-EECSSCE---------------EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred eeeec-cCCCCce---------------EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC
Confidence 223 4566554 79999999999999999999999999873233232 345999999999999
Q ss_pred CCccccCccceeeeecccce-eeccccC---Cc-cccccc-CCCeEEEEEccCCCEEEEeeC-CeEEEEeC
Q 010801 438 APRARRSSLSNLTRGLYRQA-HENSSSG---HH-ELSYNL-SSKLLHLAWHPTTNLIACANG-NSLFFHYA 501 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~-~iw~~~~---~~-~~~~~~-~~~i~~~~~sp~~~~la~~~~-~~~~i~~~ 501 (501)
++++ |++|+.|+. ++|+... .. ....+| ...|++++|+|++. |++++. +.+.+|+.
T Consensus 547 --dg~~-----lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 547 --DNVR-----LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp --TSSE-----EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred --CCCE-----EEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 7888 999999999 9996543 22 345578 79999999999999 888875 55999974
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-43 Score=324.55 Aligned_cols=286 Identities=18% Similarity=0.184 Sum_probs=241.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+++|.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~-------- 55 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE-------- 55 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC--------
Confidence 689999999999999999999999999999998764 346788888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++++|++|+.|++|++||+.+++.....
T Consensus 56 ----~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~------------------------------------ 93 (304)
T 2ynn_A 56 ----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------------------------ 93 (304)
T ss_dssp ----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999998 78899999999999999999987754332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|+|++++|++| .|++|++||++........ +.+|..
T Consensus 94 -------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~~ 141 (304)
T 2ynn_A 94 -------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEH 141 (304)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCCS
T ss_pred -------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccCC
Confidence 6899999999999999999999 9999999999855444443 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~ 346 (501)
.|.+++|+|+++.+|++|+.|+.|++||+++.... ..+. .+|...+..+.|+| ++++|++++
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceec------------cCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 99999999953389999999999999999876432 1111 12456789999987 678999886
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++++..+.+|...+ ..++|+|++++|++|+.||+|+|||+.+++ ....+..
T Consensus 206 ~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~ 268 (304)
T 2ynn_A 206 DDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNV 268 (304)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred CCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeeccC
Confidence 59999999986 88899999998765 789999999999999999999999999884 5588999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~ 462 (501)
|...++++++.|.....+ +++|+.++..+|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~-----~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNY-----IASGFDNGFTVLSL 300 (304)
T ss_dssp SSSSEEEEEECTTCGGGC-----EEEEETTEEEEEEC
T ss_pred CCccEEEEEECCCCCceE-----EEEecCCceEEEEe
Confidence 999999999998643345 78887777666643
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=325.26 Aligned_cols=284 Identities=15% Similarity=0.226 Sum_probs=242.7
Q ss_pred cccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
..|.+.|++++|+|+ +++||+|+.|++|+||++.+++ ......+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-------------------------~~~~~~l~gh~--- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-------------------------LDLQWSLEGHQ--- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCS---
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-------------------------eeeeeeeccCC---
Confidence 369999999999985 6799999999999999998653 22445688999
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..|.+++|+ +++.++++++.|++|++||+.+++.....
T Consensus 81 ---------~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~~------------------------------- 118 (321)
T 3ow8_A 81 ---------LGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSI------------------------------- 118 (321)
T ss_dssp ---------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred ---------CCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEEE-------------------------------
Confidence 899999998 78899999999999999999987754432
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...+.+++|+|++++|++| .|+.|++|+++....... +
T Consensus 119 ------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--------~ 160 (321)
T 3ow8_A 119 ------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--------L 160 (321)
T ss_dssp ------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--------E
T ss_pred ------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--------e
Confidence 4566788899999999999999 999999999995544332 4
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
..|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+ .+|...|.+++|+|++++|+
T Consensus 161 ~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~~-------------~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HTL-------------EGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSSCCCEEEECTTSCEEE
T ss_pred cCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEE-------------cccCCceeEEEEcCCCCEEE
Confidence 5677889999999999 99999999999999999987543 333 34678999999999999999
Q ss_pred EEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+++ |+.|++||++. .+....+.+|...+ .+++|+|++++|++++.|++|+|||+.+++ ...+
T Consensus 223 s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 285 (321)
T 3ow8_A 223 TASDDGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHT 285 (321)
T ss_dssp EECTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEcCCCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEE
Confidence 986 59999999986 78888898888765 799999999999999999999999999884 4588
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+.+|...|.+++|++ ++.. |++++.|+. ++|+.
T Consensus 286 ~~~h~~~v~~v~~s~--~g~~-----l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNG--NGSK-----IVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECCCSSCEEEEEECT--TSSE-----EEEEETTCCEEEEEC
T ss_pred EcCCCCcEEEEEECC--CCCE-----EEEEeCCCeEEEEeC
Confidence 999999999999998 6777 999999999 99953
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-43 Score=338.72 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=246.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.++|++++|+|++++||+|+.||+|+|||+.+++.. ..+++|.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------------~~l~~h~------- 150 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------- 150 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS-------
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------EEEeccC-------
Confidence 469999999999999999999999999999999987653 6789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ +++++|++|+.|++|++||+.++++....
T Consensus 151 -----~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~~----------------------------------- 188 (410)
T 1vyh_C 151 -----DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTM----------------------------------- 188 (410)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECC-----------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEEE-----------------------------------
Confidence 899999998 78999999999999999999876644322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++++|++| .|++|++||+++ +.++.. +.+|.
T Consensus 189 --------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~~-------~~~h~ 234 (410)
T 1vyh_C 189 --------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKT-------FTGHR 234 (410)
T ss_dssp --------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEE-------EECCS
T ss_pred --------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEE-------EeCCC
Confidence 6899999999999999999999 999999999994 445543 57899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---------
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--------- 338 (501)
..|.++.++|++ .+|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|+
T Consensus 235 ~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 235 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AEL-------------REHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECCSCGGGGGGGC
T ss_pred ccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eEe-------------cCCCceEEEEEEcCcccccchhhh
Confidence 999999999999 99999999999999999887533 222 346788999999996
Q ss_pred -----------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 339 -----------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 339 -----------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|.+|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++++|++|+.||
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence 66899886 59999999986 88889999998765 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.|++||+.+++. ...+.+|...|.+++|+| ++.+ |++|+.|+. ++|+
T Consensus 361 ~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~--~~~~-----l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 361 TLRVWDYKNKRC-MKTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEEECCTTSCC-CEEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEEC
T ss_pred eEEEEECCCCce-EEEEcCCCCcEEEEEEcC--CCCE-----EEEEeCCCcEEEEe
Confidence 999999988754 488999999999999998 6667 999999999 9994
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.8e-42 Score=346.85 Aligned_cols=354 Identities=18% Similarity=0.237 Sum_probs=291.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|++++|++|+.||.|++||.... ....+.+|.
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~----------------------------~~~~~~~~~-------- 221 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------- 221 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC----------------------------EEEEEECCS--------
T ss_pred CCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCc----------------------------EEEEEecCC--------
Confidence 47889999999999999999999999999995432 446788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++.+|++++.|+.|++|+..... ...... +...+..+.+.++...++.+.
T Consensus 222 ----~~v~~~~~s--~dg~~l~~~~~d~~i~~w~~~~~~-~~~~~~-------------~~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 222 ----SSVRGVAFS--PDGQTIASASDDKTVKLWNRNGQL-LQTLTG-------------HSSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp ----SCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCE-EEEECC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred ----CCEEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCE-EEEEec-------------CCCCEEEEEEcCCCCEEEEEe
Confidence 889999998 889999999999999999975433 322211 123444555666777776665
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. ++.+++|+... +..+.+ .+|...|.+++|+|+++.++++ .|+.|++||+. ...... +.+|..
T Consensus 282 ~--d~~i~~w~~~~----~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~--------~~~~~~ 345 (577)
T 2ymu_A 282 D--DKTVKLWNRNG----QLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQT--------LTGHSS 345 (577)
T ss_dssp T--TSCEEEEETTS----CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE--------ECCCSS
T ss_pred C--CCEEEEEeCCC----cEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEE--------EeCCCC
Confidence 3 78999999763 344444 7899999999999999999999 99999999987 443332 567889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||... +.. ..+ .+|...|.+++|+|++++|++++ |
T Consensus 346 ~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~~----~~~-------------~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 346 SVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEETTC-CEE----EEE-------------ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEeCC
Confidence 99999999999 9999999999999999643 221 222 34678999999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||.. ++.+..+.+|...+ ++++|+||+++|++++.|+.|++||.. + .....+.+|.
T Consensus 407 ~~v~~~~~~--~~~~~~~~~~~~~v---------------~~~~~s~d~~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~ 467 (577)
T 2ymu_A 407 KTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDDQTIASASDDKTVKLWNRN-G-QLLQTLTGHS 467 (577)
T ss_dssp SEEEEECTT--CCEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-S-CEEEEEECCS
T ss_pred CEEEEEeCC--CCEEEEecCCCCCe---------------EEEEECCCCCEEEEEcCCCEEEEEECC-C-CEEEEEcCCC
Confidence 999999963 78888888888765 789999999999999999999999975 3 4558899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..+.+++|+| ++++ |++++.|+. ++|+.. +......+|...|++++|+|++++||+++.|+ +++|+
T Consensus 468 ~~v~~~~~sp--d~~~-----las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 468 SSVRGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp SCEEEEEECT--TSCE-----EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEEcC--CCCE-----EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999 7888 999999999 999544 44555678999999999999999999999665 99996
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=323.07 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=206.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|.+++|+|||++|++++ |+++++||....... .....+..........|+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~----------------~~~~~~~~~~~~~~~~~~------- 82 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK----------------DPCAAPNEGFCSAGVQTE------- 82 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES----------------SGGGTTCGGGCSEEEEES-------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec----------------cccccCCcceeeeeeccC-------
Confidence 35678899999999999999887 778888874321100 000000000011112233
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ ++ ..|++|+.||+|+|||+.+++......
T Consensus 83 -----~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~---------------------------------- 120 (344)
T 4gqb_B 83 -----AGVADLTWV--GE-RGILVASDSGAVELWELDENETLIVSK---------------------------------- 120 (344)
T ss_dssp -----SCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEEEE----------------------------------
T ss_pred -----CCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeEee----------------------------------
Confidence 789999998 55 578899999999999999876443220
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....+|...|++++|+|+|++|++| .|++|++||++ .++.+.. +.+|.
T Consensus 121 -----------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~ 169 (344)
T 4gqb_B 121 -----------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHA 169 (344)
T ss_dssp -----------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred -----------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcC
Confidence 0115899999999999999999999 99999999999 4555554 68899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
..|.+++|+|++..+|++++.|+.|++||+++++.. ..+.. ..|...+.+++|+|+ +++|++|+
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEE
T ss_pred CceEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEec
Confidence 999999999998568999999999999999987643 22221 123457899999995 56788875
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
|+.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+.+++ + ..+.
T Consensus 235 ~dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~-~~~~ 296 (344)
T 4gqb_B 235 ENGTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-L-FRSQ 296 (344)
T ss_dssp TTSEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCCE-E-EEEC
T ss_pred cCCcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCCc-E-EEEc
Confidence 59999999986 88999999998876 799999997 589999999999999998773 2 3455
Q ss_pred cccCcccceeecc
Q 010801 425 AGKNENRKPILQA 437 (501)
Q Consensus 425 ~~~~~v~~~~~~~ 437 (501)
+|.+.|.+++|+|
T Consensus 297 ~H~~~V~~v~~sp 309 (344)
T 4gqb_B 297 AHRDFVRDATWSP 309 (344)
T ss_dssp CCSSCEEEEEECS
T ss_pred CCCCCEEEEEEeC
Confidence 5555555555554
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-42 Score=326.58 Aligned_cols=273 Identities=14% Similarity=0.182 Sum_probs=204.4
Q ss_pred cccccceEEEEEccCCCEEEEEec------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
..|...|++|+|||||++||+|+. |+.|++|+..++... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-----------------------ESLCTAGVQTE- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-----------------------GGGCSEEEECS-
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-----------------------eeEecccCCCC-
Confidence 358999999999999999999997 778999987766431 12223445677
Q ss_pred chhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ |++ .+++++.||+|+|||+.+++.......
T Consensus 95 -----------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~--------------------------- 133 (357)
T 4g56_B 95 -----------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVNKF--------------------------- 133 (357)
T ss_dssp -----------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCCCE---------------------------
T ss_pred -----------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEEee---------------------------
Confidence 889999998 565 566788999999999988764322100
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
...+|...|++++|+|++++|++| .|+.|++||++ .++.+..
T Consensus 134 ------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~------ 176 (357)
T 4g56_B 134 ------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS------ 176 (357)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE------
T ss_pred ------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE------
Confidence 015899999999999999999999 99999999999 4555543
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-C
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-Q 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~ 340 (501)
+.+|...|++++|+|++..++++++.||.|++||+++++.. ..+.. ..|...+.+++|+|++ .
T Consensus 177 -~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 177 -YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp -ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTT
T ss_pred -EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccc
Confidence 67899999999999998568999999999999999987543 11111 1245679999999974 6
Q ss_pred EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCc
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.||+|+|||+++++.
T Consensus 241 ~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp EEEEEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred eEEEeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 788875 59999999986 88888998888765 799999987 6899999999999999987732
Q ss_pred ceEEEecccCcccceeecc
Q 010801 419 GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~ 437 (501)
. ...+|.+.|++++|+|
T Consensus 305 ~--~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 305 F--RDLSHRDFVTGVAWSP 321 (357)
T ss_dssp E--EECCCSSCEEEEEECS
T ss_pred e--EECCCCCCEEEEEEeC
Confidence 2 2234544444444444
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-41 Score=315.90 Aligned_cols=285 Identities=13% Similarity=0.192 Sum_probs=236.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~-------- 97 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS-------- 97 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC--------
Confidence 5999999999999999999999999999999886643 36677888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++|++.++....
T Consensus 98 ----~~v~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~~~~~-------------------------------------- 133 (340)
T 1got_B 98 ----SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNV-------------------------------------- 133 (340)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTCEEEEEETTTCSBSC--------------------------------------
T ss_pred ----ccEEEEEEC--CCCCEEEEEeCCCeEEEEECccCCCcc--------------------------------------
Confidence 889999998 789999999999999999987653110
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.....+ .+|...|.++.|++++. ++++ .|++|++||++ .++.... +.+|..
T Consensus 134 ------------------~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~~ 185 (340)
T 1got_B 134 ------------------RVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHTG 185 (340)
T ss_dssp ------------------EEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCSS
T ss_pred ------------------eeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCCC
Confidence 111122 68999999999998875 6666 99999999999 4444443 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.|+.|++||++++... ..+ .+|...|.+++|+|++++|++++ |
T Consensus 186 ~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~~-------------~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 186 DVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QTF-------------TGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EEE-------------cCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 99999999998 99999999999999999887533 333 34678999999999999999986 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||++. .+.+..+..+... ..+++++|+|++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 248 ~~v~iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~~~~h~ 312 (340)
T 1got_B 248 ATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHD 312 (340)
T ss_dssp SCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECCS
T ss_pred CcEEEEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCc-EeeEeecCC
Confidence 9999999985 6666555422211 112789999999999999999999999998874 458899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+|.+++++| ++.+ |++|+.|+. ++|+
T Consensus 313 ~~v~~~~~s~--dg~~-----l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTD--DGMA-----VATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECT--TSSC-----EEEEETTSCEEEEC
T ss_pred CcEEEEEEcC--CCCE-----EEEEcCCccEEecC
Confidence 9999999998 7777 999999999 9983
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-40 Score=309.54 Aligned_cols=291 Identities=14% Similarity=0.228 Sum_probs=233.0
Q ss_pred ccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+++|.
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------- 65 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------- 65 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS-------
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc-------
Confidence 699999999999965 89999999999999998754321 233567889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++.+|++++.|++|++||+.+++.....
T Consensus 66 -----~~v~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~~~~~~~----------------------------------- 103 (319)
T 3frx_A 66 -----HIVQDCTLT--ADGAYALSASWDKTLRLWDVATGETYQRF----------------------------------- 103 (319)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----ccEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCeeEEE-----------------------------------
Confidence 899999998 89999999999999999999987744332
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++.+|++| .|++|++||++ .. .+.. +.+|.
T Consensus 104 --------------------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~~-------~~~h~ 148 (319)
T 3frx_A 104 --------------------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLAT-------LLGHN 148 (319)
T ss_dssp --------------------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEEE-------ECCCS
T ss_pred --------------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEEE-------EeccC
Confidence 6899999999999999999999 99999999998 33 3332 57899
Q ss_pred cceEEEEEecCC-----CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 268 EVITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 268 ~~v~~v~~~p~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
..|.+++|.|.. ...|++++.|+.|++||+++.+.. .. +.+|...|.+++|+|+|++|
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~-------------~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE----AD-------------FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE----EE-------------ECCCCSCEEEEEECTTSSEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh----ee-------------ecCCCCcEEEEEEcCCCCEE
Confidence 999999999853 148999999999999999876432 22 24578899999999999999
Q ss_pred EEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
++++ |+.|++||+.+ ++.+..+..+.. + .+++|+|++.+|++++.+ .+++|+++.+. ...
T Consensus 212 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~la~~~~~-~i~v~~~~~~~-~~~ 272 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAA-KKAMYTLSAQDE-V---------------FSLAFSPNRYWLAAATAT-GIKVFSLDPQY-LVD 272 (319)
T ss_dssp EEEETTCEEEEEETTT-TEEEEEEECCSC-E---------------EEEEECSSSSEEEEEETT-EEEEEEETTEE-EEE
T ss_pred EEEeCCCeEEEEECCC-CcEEEEecCCCc-E---------------EEEEEcCCCCEEEEEcCC-CcEEEEeCcCe-eee
Confidence 9986 69999999986 777777775543 2 799999999999988765 59999998652 212
Q ss_pred EEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 422 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.+..+. ......+...+.+++|+|||++|++|+.|+ ++||+
T Consensus 273 ~~~~~~--------------------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 273 DLRPEF--------------------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp EECCCC--------------------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccCccc--------------------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 221110 001123445788999999999999999655 99997
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=311.89 Aligned_cols=290 Identities=16% Similarity=0.171 Sum_probs=241.5
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeec--CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~--~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
....+.+++|. +.|++++|++. +++.+|++|+.|++|++|++.+++....
T Consensus 22 g~~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~---------------- 73 (321)
T 3ow8_A 22 GILFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ---------------- 73 (321)
T ss_dssp EEEEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------
T ss_pred hheeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------
Confidence 33456678999 99999999853 2567999999999999999876553221
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
..+ .+|...|.+++|++++.+++++ .|++|++||+.
T Consensus 74 ------------------------------------------~~l-~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 74 ------------------------------------------WSL-EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp ------------------------------------------EEE-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ------------------------------------------eee-ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 112 6899999999999999999999 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
.++.+.. +..+...+.+++|+|++ ++|++++.||.|++||+++++.. ..+. .|.
T Consensus 111 -~~~~~~~-------~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~~~-------------~~~ 164 (321)
T 3ow8_A 111 -NGKQIKS-------IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YSLD-------------TRG 164 (321)
T ss_dssp -TTEEEEE-------EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EEEE-------------CSS
T ss_pred -CCCEEEE-------EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EEec-------------CCC
Confidence 4444443 45677788999999999 99999999999999999887533 2222 345
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..+.+++|+|++++|++++ |+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++|+.||
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEECTTSCEEEEECTTS
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEcCCCCEEEEEcCCC
Confidence 7899999999999999986 59999999986 88888998888765 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEcc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp 483 (501)
.|+|||+.++. ....+.+|...|.+++|+| ++.+ |++++.|+. ++|+.. .......+|...|.+++|+|
T Consensus 229 ~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp--~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 229 YIKIYDVQHAN-LAGTLSGHASWVLNVAFCP--DDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CEEEEETTTCC-EEEEECCCSSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred eEEEEECCCcc-eeEEEcCCCCceEEEEECC--CCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 99999999874 4588999999999999999 6777 999999999 999554 34455678999999999999
Q ss_pred CCCEEEEeeCCe-EEEEeC
Q 010801 484 TTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 484 ~~~~la~~~~~~-~~i~~~ 501 (501)
++++|++++.|+ +++|++
T Consensus 301 ~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeC
Confidence 999999998654 999974
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=312.81 Aligned_cols=298 Identities=18% Similarity=0.319 Sum_probs=226.7
Q ss_pred cccc-ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~-~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+ .|++++|+|+|++||+|+.|++|+|||+.+++.. .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence 4766 8999999999999999999999999999876321 0112346888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ |++++|++++.|++|++|++..+...
T Consensus 62 -----~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~-------------------------------------- 96 (345)
T 3fm0_A 62 -----RTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFE-------------------------------------- 96 (345)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EE--------------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeE--------------------------------------
Confidence 889999998 79999999999999999998765422
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 265 (501)
+...+ .+|...|.+++|+|++++|++| .|++|++||++.... +.. .+.+
T Consensus 97 --------------------~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~~~~ 148 (345)
T 3fm0_A 97 --------------------CVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS-------VLNS 148 (345)
T ss_dssp --------------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE-------EECC
T ss_pred --------------------EEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE-------EecC
Confidence 22222 6899999999999999999999 999999999984432 222 2578
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+|++ ++|++++.|+.|++||.++++.. ... .+.+|...|.+++|+|+|++|+++
T Consensus 149 h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~----~~~-----------~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV----CCA-----------TLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp CCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE----EEE-----------EECCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE----EEE-----------EecCCCCceEEEEECCCCCEEEEE
Confidence 99999999999999 99999999999999999876421 111 134578899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCc--------------eeEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 346 D-YMNLKLWDIRMDSTP--------------VATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
+ |++|++||....+.. +..+.+ |... +++++|+|++..|++++.|+.|+
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAWCQLTGALATACGDDAIR 277 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEECTTTCCEEEEETTSCEE
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEEecCCCEEEEEeCCCeEE
Confidence 6 599999998542211 112222 2222 27999999999999999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCC-CEE
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT-NLI 488 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~-~~l 488 (501)
+|+...+.... .+ .+. + ......+|...|++++|+|++ .+|
T Consensus 278 vw~~~~~~~~~-------~~----~~~------~---------------------~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 278 VFQEDPNSDPQ-------QP----TFS------L---------------------TAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEECTTSCTT-------SC----CEE------E---------------------EEEETTSSSSCEEEEEECSSSTTEE
T ss_pred EEEeCCCCCcc-------ee----eEE------E---------------------EeeecccccCcEeEeEEeCCCceEE
Confidence 99987652210 00 000 0 001123567789999999987 488
Q ss_pred EEeeCC-eEEEEe
Q 010801 489 ACANGN-SLFFHY 500 (501)
Q Consensus 489 a~~~~~-~~~i~~ 500 (501)
|+++.| .+++|+
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 888855 488886
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-41 Score=322.43 Aligned_cols=283 Identities=15% Similarity=0.240 Sum_probs=244.4
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
...+.+|. +.|++++|+ |++.+|++|+.|++|++||+.+++.....
T Consensus 101 ~~~l~gh~------------~~V~~~~~~--p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-------------------- 146 (410)
T 1vyh_C 101 KYALSGHR------------SPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTL-------------------- 146 (410)
T ss_dssp SCEEECCS------------SCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEE--------------------
T ss_pred eEeecccC------------CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------
Confidence 45677898 999999998 78999999999999999999987644332
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|...|.+++|+|++++|++| .|++|++||+. ..++
T Consensus 147 -----------------------------------------~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~ 184 (410)
T 1vyh_C 147 -----------------------------------------KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFEC 184 (410)
T ss_dssp -----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCE
T ss_pred -----------------------------------------eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce
Confidence 6899999999999999999999 99999999998 4445
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+. .+.+|...|.+++|+|++ ++|++++.|+.|++||++++... ..+ .+|...|..
T Consensus 185 ~~-------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~~-------------~~h~~~v~~ 239 (410)
T 1vyh_C 185 IR-------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTF-------------TGHREWVRM 239 (410)
T ss_dssp EE-------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCEEE
T ss_pred eE-------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEE-------------eCCCccEEE
Confidence 44 378899999999999999 99999999999999999987543 333 346789999
Q ss_pred EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC----------------
Q 010801 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---------------- 395 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------- 395 (501)
+.++|++++|++++ |+.|++||+++ ++....+.+|...+ .+++|+|+
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceE---------------EEEEEcCcccccchhhhccccccc
Confidence 99999999999986 69999999986 78888888888765 78999996
Q ss_pred ----CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc
Q 010801 396 ----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL 468 (501)
Q Consensus 396 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~ 468 (501)
+.+|++|+.|+.|++||+.++. ....+.+|...|.+++|+| ++++ |++|+.|+. ++|+.. +....
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~--~g~~-----l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCEE
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcC--CCCE-----EEEEeCCCeEEEEECCCCceEEE
Confidence 6789999999999999999884 4588899999999999998 7777 999999999 999543 44556
Q ss_pred ccccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 469 SYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 469 ~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
...|...|++++|+|++++||+|+.| .+.+|+.
T Consensus 376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 67899999999999999999999955 5999973
No 16
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-41 Score=349.66 Aligned_cols=386 Identities=12% Similarity=0.081 Sum_probs=281.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||+|+||+..+.+. .. ...|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~-~~~~~------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VI-KLEDR------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EE-ECSSC-------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EE-EcCCC-------
Confidence 46899999999999999999999999999999775532 12 22365
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ + +++|++++.|++|++||+.+++...... ..+.+..+.+.++..+++.+
T Consensus 59 -----~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 59 -----SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp -----CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCEEEEECCTTCSEEEEE
T ss_pred -----CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCEEEEEECCCCCEEEEE
Confidence 789999998 5 7799999999999999999887665442 22456777788888888887
Q ss_pred eeccCcceEEEeccCceeeeeeE-------eecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 189 EWTENMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.. ++.+++||+.......... ....+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...
T Consensus 117 s~--dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~ 192 (902)
T 2oaj_A 117 LQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYE 192 (902)
T ss_dssp ET--TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCC
T ss_pred cC--CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecc
Confidence 64 8999999998754321110 122679999999999996 4688888 99999 99999 45555443211
Q ss_pred C-----------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc----------------------c
Q 010801 260 P-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------S 306 (501)
Q Consensus 260 ~-----------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~----------------------~ 306 (501)
. .....|...|.+++|+|+| ++|++++.||.|++||+++++.... .
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 271 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNA 271 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCC
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcccc
Confidence 0 0123456789999999999 9999999999999999977543210 0
Q ss_pred --c--------------c-----------------eee-ccc----------------------------c---------
Q 010801 307 --A--------------R-----------------ILR-DAA----------------------------E--------- 315 (501)
Q Consensus 307 --~--------------~-----------------~~~-~~~----------------------------~--------- 315 (501)
+ . .+. .+. .
T Consensus 272 ~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (902)
T 2oaj_A 272 AKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPI 351 (902)
T ss_dssp CEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEEC
T ss_pred CCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEEC
Confidence 0 0 000 000 0
Q ss_pred ---cC------CC-----------cc----------------------------------------------------ee
Q 010801 316 ---SH------GS-----------KS----------------------------------------------------FF 323 (501)
Q Consensus 316 ---~~------~~-----------~~----------------------------------------------------~~ 323 (501)
.+ .. .. .+
T Consensus 352 ~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l 431 (902)
T 2oaj_A 352 PRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL 431 (902)
T ss_dssp CSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC
T ss_pred CCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc
Confidence 00 00 00 00
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce--eEee---------ccccccccccccCCCCCcceeeEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK---------IHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.+|...+..++|+|++++|++|+ |++|++||+.. +... ..+. +|...+ ++++
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~~V---------------~sva 495 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKELAV---------------DKIS 495 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSCCE---------------EEEE
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCCce---------------eEEE
Confidence 11222233345578899999986 69999999975 4321 1111 333333 8999
Q ss_pred EcCCCcEEEEEeCCCeEEEEecCCCCc--------------------------------------------ceEEEeccc
Q 010801 392 VSGDGLHFATGSYSNLLRIFSHGVGSA--------------------------------------------GGITVEAGK 427 (501)
Q Consensus 392 ~s~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------------~~~~~~~~~ 427 (501)
|+||+++||+|+.||+|+||++.+++. ....+.+|.
T Consensus 496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence 999999999999999999999986621 246788999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCcc-------ccc-ccCCCeEEEEEc-----cCC---CEEEE
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-------LSY-NLSSKLLHLAWH-----PTT---NLIAC 490 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~-------~~~-~~~~~i~~~~~s-----p~~---~~la~ 490 (501)
+.|++++|+| +| + ||+|+.|+. ++|+...... ... +|...|++++|+ ||| .+|++
T Consensus 576 ~~V~svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s 647 (902)
T 2oaj_A 576 GKTSAINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC 647 (902)
T ss_dssp CSEEEEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred CcEEEEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence 9999999998 77 7 999999999 9997654321 232 788999999999 886 89999
Q ss_pred eeCC-eEEEEe
Q 010801 491 ANGN-SLFFHY 500 (501)
Q Consensus 491 ~~~~-~~~i~~ 500 (501)
|+.| .+++|+
T Consensus 648 gs~D~tv~~wd 658 (902)
T 2oaj_A 648 GTDMGEVITYK 658 (902)
T ss_dssp EETTSEEEEEE
T ss_pred EecCCcEEEEE
Confidence 9955 599996
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-40 Score=305.04 Aligned_cols=284 Identities=16% Similarity=0.151 Sum_probs=235.9
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
..+++++|. +.|++++|+ |++++|++++.||+|++||+.++......
T Consensus 5 ~~~~~~~h~------------~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~~------------------- 51 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSI------------------- 51 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------
T ss_pred eEEeecCCC------------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEEe-------------------
Confidence 457789999 899999998 79999999999999999999887644332
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..|...|.+++|+|++++|++| .|++|++||+++..
T Consensus 52 ------------------------------------------~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~- 88 (304)
T 2ynn_A 52 ------------------------------------------QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE- 88 (304)
T ss_dssp ------------------------------------------ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-
T ss_pred ------------------------------------------eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-
Confidence 5788899999999999999999 99999999999544
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.+.. +.+|...|.+++|+|++ ++|++++.|++|++||++++.... .. +.+|...|.
T Consensus 89 ~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---~~-------------~~~h~~~v~ 144 (304)
T 2ynn_A 89 KVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---QT-------------FEGHEHFVM 144 (304)
T ss_dssp EEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE---EE-------------ECCCCSCEE
T ss_pred EEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh---hh-------------hcccCCcEE
Confidence 4432 67899999999999999 999999999999999998763221 22 345778999
Q ss_pred EEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcC--CCcEEEEEeCCC
Q 010801 332 DIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSN 406 (501)
Q Consensus 332 ~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg 406 (501)
+++|+| ++.+|++|+ |+.|++||++. ..+...+. ++...+ ..++|+| ++++|++|+.|+
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTS
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCC
Confidence 999999 678899886 69999999975 55544444 333332 5678876 788999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEcc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp 483 (501)
+|++||+.+++ ...++.+|...+..++|+| ++.+ |++|+.|+. ++|+.. +.......+...+.+++|+|
T Consensus 209 ~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 209 TIKIWDYQTKS-CVATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred eEEEEeCCCCc-cceeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999884 4588999999999999999 6666 999999999 999544 44455667788999999999
Q ss_pred CCC--EEEEeeCCeEEEEe
Q 010801 484 TTN--LIACANGNSLFFHY 500 (501)
Q Consensus 484 ~~~--~la~~~~~~~~i~~ 500 (501)
++. +||+|+++++.+|.
T Consensus 281 ~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 281 TGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp TCGGGCEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCceEEEE
Confidence 985 69999999999986
No 18
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-40 Score=360.75 Aligned_cols=371 Identities=14% Similarity=0.191 Sum_probs=275.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~---------------------------~~~~~~h~-------- 657 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---------------------------LLDIKAHE-------- 657 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS--------
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEeccCC--------
Confidence 5999999999999999999999999999999987753 46788999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC--Cccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 187 (501)
+.|.+++|+ |++++|++++.|++|++||+.+++........ ...+....+.+. ..++++
T Consensus 658 ----~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 658 ----DEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYDEH-------------SEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSSSCCEEEE
T ss_pred ----CCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-------------CCcEEEEEEecCCCceEEEE
Confidence 899999998 78999999999999999999998876654322 233444455553 334444
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCC------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP------ 260 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~------ 260 (501)
+. .++.+++||+... .+...+ .+|...|.+++|+|+++.++++ .|+.|++||+.... ....+....
T Consensus 719 g~--~d~~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 719 GS--NDFFLKLWDLNQK---ECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSE 791 (1249)
T ss_dssp EE--TTSCEEEEETTSS---SEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC----
T ss_pred Ee--CCCeEEEEECCCc---chhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc-ccceecccccccccC
Confidence 44 4889999999863 455555 7899999999999999999999 99999999998432 222211100
Q ss_pred -------------------------------------C-----CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 261 -------------------------------------S-----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 261 -------------------------------------~-----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
. ...+|...|.+++|+|++ .++++++.||.|++||+.
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNID 870 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcC
Confidence 0 012677889999999998 999999999999999998
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeC--------------------
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM-------------------- 357 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~-------------------- 357 (501)
++... ..+ .+|...|.+++|+|+|++|++++ |+.|++||+..
T Consensus 871 ~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1249)
T 3sfz_A 871 SRLKV----ADC-------------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933 (1249)
T ss_dssp TTEEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT
T ss_pred CCcee----eec-------------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCC
Confidence 76432 222 23455666666666666666553 36666665431
Q ss_pred ----------------------------------------------------------CCCceeEeeccccccccccccC
Q 010801 358 ----------------------------------------------------------DSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 358 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
.++....+.+|...+
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v------- 1006 (1249)
T 3sfz_A 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV------- 1006 (1249)
T ss_dssp EEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC-------
T ss_pred CcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce-------
Confidence 133333333333322
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC---------------------------------------cce
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGG 420 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------~~~ 420 (501)
++++|+|++++|++++.||.|++||+.++. ...
T Consensus 1007 --------~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1007 --------RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp --------CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred --------EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 577777777777777777777777665431 223
Q ss_pred EEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEccCCCEEEEeeCCe-E
Q 010801 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-L 496 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~ 496 (501)
..+.+|...+.+++++| ++++ +++++.|+. .+|+. ........+|...|++++|+|++++||+++.|+ +
T Consensus 1079 ~~~~~~~~~v~~~~~s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp EEEECCSSCCCCEEECS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred EEEcccCCcEEEEEECC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 56677889999999998 7777 999999999 99954 345566778999999999999999999999665 9
Q ss_pred EEEeC
Q 010801 497 FFHYA 501 (501)
Q Consensus 497 ~i~~~ 501 (501)
++|+.
T Consensus 1152 ~vwd~ 1156 (1249)
T 3sfz_A 1152 RIWNV 1156 (1249)
T ss_dssp CEEES
T ss_pred EEEEC
Confidence 99973
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-40 Score=311.82 Aligned_cols=288 Identities=14% Similarity=0.186 Sum_probs=236.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------- 106 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------- 106 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS-------
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC-------
Confidence 36999999999999999999999999999999876543 35566777
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++.++++++.|+.+++|++........
T Consensus 107 -----~~v~~~~~s--p~g~~lasg~~d~~i~v~~~~~~~~~~~------------------------------------ 143 (354)
T 2pbi_B 107 -----TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENM------------------------------------ 143 (354)
T ss_dssp -----SCCCEEEEC--TTSSEEEEESTTSEEEEEECCCCTTCCS------------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEeeCCCCEEEEEEeccccccc------------------------------------
Confidence 789999998 8999999999999999999865321100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
......+ .+|...|.+++|+|++..|+++ .|++|++||+++ ++.+.. +.+|.
T Consensus 144 ------------------~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~~-------~~~h~ 196 (354)
T 2pbi_B 144 ------------------AAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQS-------FHGHG 196 (354)
T ss_dssp ------------------GGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEE-------EECCS
T ss_pred ------------------cccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEEE-------EcCCC
Confidence 0011111 5789999999999999999999 999999999994 444443 67899
Q ss_pred cceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
..|.+++|+|+ + ++|++|+.||.|++||+++++.. ..+. +|...|.+++|+|++++|+++
T Consensus 197 ~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 197 ADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QAFE-------------THESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp SCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCSSCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCeEEEEEeCCCCEEEEE
Confidence 99999999884 5 89999999999999999987543 3333 467899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ |++|++||++. .+.+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.++.. ...+.
T Consensus 259 s~D~~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~ 323 (354)
T 2pbi_B 259 SDDATCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILF 323 (354)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEEC
T ss_pred eCCCeEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEEE
Confidence 6 59999999985 5555555433221 1226899999999999999999999999988854 47889
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|...|.+++|+| ++++ |++|+.|+. ++|
T Consensus 324 ~h~~~v~~l~~sp--dg~~-----l~sgs~D~~v~vW 353 (354)
T 2pbi_B 324 GHENRVSTLRVSP--DGTA-----FCSGSWDHTLRVW 353 (354)
T ss_dssp CCSSCEEEEEECT--TSSC-----EEEEETTSEEEEE
T ss_pred CCCCcEEEEEECC--CCCE-----EEEEcCCCCEEec
Confidence 9999999999999 7788 999999999 998
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.8e-40 Score=302.61 Aligned_cols=283 Identities=22% Similarity=0.393 Sum_probs=230.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++ ....+.+|.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~-------- 65 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK-------- 65 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS--------
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC--------
Confidence 689999999999999999999999999999988664 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 66 ----~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~------------------------------------ 103 (312)
T 4ery_A 66 ----LGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTL------------------------------------ 103 (312)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999998 78999999999999999999887644332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|+|++++|++| .|+.|++||++. ++.... +..|..
T Consensus 104 -------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-------~~~~~~ 150 (312)
T 4ery_A 104 -------------------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKT-------LPAHSD 150 (312)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEE-------ECCCSS
T ss_pred -------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEE-------ecCCCC
Confidence 5788999999999999999999 999999999994 444443 577889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. .+...+..++|+|++++|++++ |
T Consensus 151 ~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 151 PVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCC
Confidence 99999999999 99999999999999999887543 22211 2346799999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE-cCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.|++||+++ ++.+..+.+|...... ....+ .+++.+|++|+.||.|++||+.+++. ...+.+
T Consensus 214 ~~i~iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~- 277 (312)
T 4ery_A 214 NTLKLWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQG- 277 (312)
T ss_dssp TEEEEEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEEECC-
T ss_pred CeEEEEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhhhhc-
Confidence 9999999986 7888888877654321 12344 46789999999999999999987732 233333
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee---CCeEEEEe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY 500 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~---~~~~~i~~ 500 (501)
|...|.+++|+|++++|++++ ++.+.+|.
T Consensus 278 ---------------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 278 ---------------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp ---------------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred ---------------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 344677888888888888775 45588886
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-40 Score=315.89 Aligned_cols=300 Identities=19% Similarity=0.317 Sum_probs=222.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch----
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF---- 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---- 104 (501)
++|.+.|++++|+|||++||+|+ ++.++||++.+++.. ..+.+|....
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~---------------------------~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV---------------------------ARLSDDSAANKDPE 112 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE---------------------------EEECC---------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE---------------------------EEecCccccccccc
Confidence 36999999999999999999987 689999999877542 2232222000
Q ss_pred --hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 105 --~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
...........|.+++|+ |++++|++|+.|++|++||+.+++.....
T Consensus 113 ~~~~~~~~~~~~~v~~v~~s--~dg~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------- 161 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMIL----------------------------- 161 (393)
T ss_dssp --------CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------
T ss_pred cccccccCCCceeEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------------------
Confidence 000000111459999998 89999999999999999999887644332
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+|...|.+++|+|+++.|++| .|++|++||+++ ++....+
T Consensus 162 --------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~----- 203 (393)
T 1erj_A 162 --------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTL----- 203 (393)
T ss_dssp --------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-----
T ss_pred --------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEE-----
Confidence 6899999999999999999999 999999999994 4444321
Q ss_pred CCCCcccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.+...+.+++|+| ++ ++|++++.||.|++||++++... ..+.. ......+|...|.+++|+|+|+
T Consensus 204 ---~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 204 ---SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp ---ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSS
T ss_pred ---EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCC
Confidence 2456799999999 76 99999999999999999887543 22211 0111246788999999999999
Q ss_pred EEEEEc-CCcEEEEEeeCC-----------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 341 HLLSRD-YMNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+|++++ |+.|++||++.. +.+...+.+|...+ .+++|+|++++|++|+.||.|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeE
Confidence 999986 699999999742 12344556666544 789999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccC----CccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAA----PRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
++||+.+++. ...+.+|...|.++++++. .++.+ |++|+.|+. ++|
T Consensus 335 ~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~-----l~sgs~Dg~i~iW 385 (393)
T 1erj_A 335 LFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNV-----FATGSGDCKARIW 385 (393)
T ss_dssp EEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEE-----EEEEETTSEEEEE
T ss_pred EEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCE-----EEEECCCCcEEEC
Confidence 9999998854 4788889888888888762 12333 555555555 555
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-39 Score=303.48 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=239.9
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+....+++|. +.|++++|+ +++++|++++.||+|++||+.+++.....
T Consensus 44 ~~~~~~~l~gH~------------~~v~~~~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---------------- 93 (340)
T 1got_B 44 QMRTRRTLRGHL------------AKIYAMHWG--TDSRLLLSASQDGKLIIWDSYTTNKVHAI---------------- 93 (340)
T ss_dssp CCCEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE----------------
T ss_pred cchhheeecCCC------------CceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCcceEe----------------
Confidence 345667899999 999999998 89999999999999999999887644332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|...|.+++|+|+++++++| .|+.|++|++..
T Consensus 94 ---------------------------------------------~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 94 ---------------------------------------------PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp ---------------------------------------------ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred ---------------------------------------------ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 5778899999999999999999 999999999985
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++.. ..+ .+|..
T Consensus 129 ~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~~~-------------~~h~~ 185 (340)
T 1got_B 129 REGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----TTF-------------TGHTG 185 (340)
T ss_dssp CSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSS
T ss_pred CCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----EEE-------------cCCCC
Confidence 43221110 1257899999999999986 4889999999999999887543 333 34778
Q ss_pred ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
.|.+++|+|++++|++|+ |+.|++||+++ ++.+..+.+|...+ ++++|+|++++|++|+.||.
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCE---------------EEEEEcCCCCEEEEEcCCCc
Confidence 999999999999999986 69999999986 88888898888765 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEc
Q 010801 408 LRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~s 482 (501)
|++||+.+++.+ ..+. .+...+.+++|+| ++++ |++|+.|+. .+|+. ........+|...|.+++|+
T Consensus 250 v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 250 CRLFDLRADQEL-MTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCcEE-EEEccCCcccceEEEEECC--CCCE-----EEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence 999999887443 3333 2334788999998 7788 999999999 99954 34455667899999999999
Q ss_pred cCCCEEEEeeCC-eEEEEe
Q 010801 483 PTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~ 500 (501)
|++.+||+|+.| .++||+
T Consensus 322 ~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEcCCccEEecC
Confidence 999999999955 599995
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.8e-39 Score=299.79 Aligned_cols=300 Identities=17% Similarity=0.238 Sum_probs=228.5
Q ss_pred ccccceEEEEE-----cc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc
Q 010801 30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~-----s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (501)
.|.+.|++++| ++ ++++||+|+.|++|+|||+.+++.. .........+.+|.
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~-- 76 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN-- 76 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS--
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC--
Confidence 69999999999 77 9999999999999999999865421 00123556788999
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..|.+++|+ |++.++++++.|++|++||+.+++.....
T Consensus 77 ----------~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~------------------------------ 114 (343)
T 2xzm_R 77 ----------HFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRF------------------------------ 114 (343)
T ss_dssp ----------SCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEE------------------------------
T ss_pred ----------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEE------------------------------
Confidence 889999998 78999999999999999999987644332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+|...|.+++|+|++++|++| .|++|++||+. ....... ..
T Consensus 115 -------------------------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~ 157 (343)
T 2xzm_R 115 -------------------------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AE 157 (343)
T ss_dssp -------------------------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CT
T ss_pred -------------------------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ec
Confidence 6899999999999999999999 99999999998 3332221 12
Q ss_pred CCCcccceEEEEEecCCC---------cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 263 MDDLTEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
...|...|.+++|+|++. .+|++++.||.|++||... ... .. +.+|...|.++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~-------------~~~h~~~v~~~ 219 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YT-------------FKAHESNVNHL 219 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EE-------------EECCSSCEEEE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EE-------------EcCccccceEE
Confidence 457889999999999852 5899999999999999432 111 22 24577899999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+|+|+|++|++|+ |+.|++||+.....+...+.. ...+ .+++|+|++++++++ .|+.|++|+
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v---------------~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GSTI---------------NQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSCE---------------EEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCcE---------------EEEEECCCCCEEEEE-CCCCEEEEE
Confidence 9999999999986 699999999543444444432 2222 799999999888755 577899999
Q ss_pred cCCCCcce-EEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEe
Q 010801 413 HGVGSAGG-ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 491 (501)
Q Consensus 413 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 491 (501)
+.+++... ..+..+ + .. ......+|...|++++|+|+|++||+|
T Consensus 283 ~~~~~~~~~~~~~~~----------~--~~-----------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAE----------P--IT-----------------------KAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp SSSCCSCSEEECCCC----------S--GG-----------------------GBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eCCCCCCceEEeecC----------c--ch-----------------------hhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 98764321 011100 0 00 011123566789999999999999999
Q ss_pred eCCe-EEEEe
Q 010801 492 NGNS-LFFHY 500 (501)
Q Consensus 492 ~~~~-~~i~~ 500 (501)
+.|+ +++|+
T Consensus 328 ~~Dg~v~~w~ 337 (343)
T 2xzm_R 328 FTDGVIRTFS 337 (343)
T ss_dssp ETTSEEEEEE
T ss_pred cCCceEEEEE
Confidence 9655 88986
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-41 Score=324.66 Aligned_cols=338 Identities=11% Similarity=0.176 Sum_probs=262.4
Q ss_pred cccccceEEEEEccCCC-EEEEE----------ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee
Q 010801 29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (501)
+.+...|.+++|+|+|+ +||+| +.||.|+|||+.+++.. +... .
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~-~ 63 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIA-S 63 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSC-C
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEE-E
Confidence 44567899999999997 99999 88999999999876421 0111 2
Q ss_pred ccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccC
Q 010801 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (501)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (501)
..|. ..|.+++|+ +++.+|++++.|+.|++|++.+....
T Consensus 64 ~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~v~vw~~~~~~~~--------------------------- 102 (416)
T 2pm9_A 64 LQVD------------SKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANNA--------------------------- 102 (416)
T ss_dssp CCCS------------SCEEEEEEC--SSSSCEEEEESSSCEEEECCSSTTSC---------------------------
T ss_pred EecC------------CceEEEEEC--CCCCeEEEEccCCeEEEeeccccccc---------------------------
Confidence 2466 889999998 78999999999999999999872100
Q ss_pred CCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCC-----
Q 010801 178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD----- 250 (501)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~----- 250 (501)
......+ .+|...|.+++|+|+ +++|+++ .|+.|++||+....
T Consensus 103 -----------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 103 -----------------------------INSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp -----------------------------CCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred -----------------------------ccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 0011122 689999999999998 8899999 99999999998554
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.... ......|...|.+++|+|++..+|++++.||.|++||+++++.. ..+..+. ...+|...
T Consensus 153 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~-------~~~~~~~~ 216 (416)
T 2pm9_A 153 YTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS-------PNSGIKQQ 216 (416)
T ss_dssp CCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC-------CSSCCCCC
T ss_pred ccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc-------cccccCCc
Confidence 2211 11346789999999999994489999999999999999987543 2332210 01234678
Q ss_pred eeEEEEeeCC-CEEEEEcC-C---cEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcC-CCcEEEEE
Q 010801 330 ISDIKFANDG-QHLLSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG 402 (501)
Q Consensus 330 i~~~~~sp~~-~~l~~~~~-~---~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~ 402 (501)
+.+++|+|++ .+|+++++ + .|++||+++...++..+. +|...+ ++++|+| ++++|+++
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEE
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEE
Confidence 9999999997 57887754 6 999999986446777777 777655 7999999 99999999
Q ss_pred eCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc-ccCccceeeeecccce-eeccccCCcccc-----------
Q 010801 403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGHHELS----------- 469 (501)
Q Consensus 403 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~iw~~~~~~~~~----------- 469 (501)
+.||.|++||+.+++ ....+..|...+.+++|+| ++ .+ +++++.|+. .+|+........
T Consensus 282 ~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 282 GRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp ESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC---------
T ss_pred eCCCCEEEeeCCCCc-cceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccC
Confidence 999999999999884 4588999999999999999 44 66 899999999 999554222111
Q ss_pred --------------------------cccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 470 --------------------------YNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 470 --------------------------~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
..+...+..++|+|+|++||+++.| .++||+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 0156778899999999999999955 4988863
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-40 Score=314.17 Aligned_cols=304 Identities=15% Similarity=0.198 Sum_probs=239.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------------~~~~~~h~------- 108 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------------THAIKLHC------- 108 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------------EEEEECCC-------
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------------ceEEecCC-------
Confidence 36999999999999999999999999999999887653 36788898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.+++|++.+.......
T Consensus 109 -----~~v~~~~~s--~~g~~las~~~d~~v~iw~~~~~~~~~~~----------------------------------- 146 (380)
T 3iz6_a 109 -----PWVMECAFA--PNGQSVACGGLDSACSIFNLSSQADRDGN----------------------------------- 146 (380)
T ss_dssp -----TTCCCCEEC--TTSSEEEECCSSSCCEEEECCCCSSCCCS-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEeeCCCcEEEEECCCCccccCC-----------------------------------
Confidence 889999998 89999999999999999998754311000
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
....+. +.+|...|.++.|+|++ ..|++| .|++|++||+.+ ++.+..+.. ....+|
T Consensus 147 ------------------~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~--~~~~~h 204 (380)
T 3iz6_a 147 ------------------MPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGS--EFPSGH 204 (380)
T ss_dssp ------------------STTCCB-CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECC--CSSSSC
T ss_pred ------------------ccceee-ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeec--ccCCCC
Confidence 000011 26899999999999964 568888 999999999994 444443211 123678
Q ss_pred ccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...|.+++|+| ++ ++|++|+.|+.|++||++..... ...+ .+|...|.+++|+|++++|+++
T Consensus 205 ~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~-------------~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 205 TADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA---VRTY-------------HGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp CSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC---CEEE-------------CCCSSCCCEEEECTTSSEEEEE
T ss_pred ccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc---eEEE-------------CCcCCCeEEEEEecCCCeEEEE
Confidence 99999999987 55 99999999999999999854211 1233 4578899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE-
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV- 423 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 423 (501)
+ |++|++||+++ ++.+..+..+..... .....+++++|+|+|++|++|+.||.|++||+..++.. ..+
T Consensus 268 s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~ 337 (380)
T 3iz6_a 268 SDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLG 337 (380)
T ss_dssp CSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE-EEEC
T ss_pred cCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE-EEEe
Confidence 6 59999999986 777777765433210 01111278999999999999999999999999887543 444
Q ss_pred ---ecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 424 ---EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 424 ---~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+|...|.+++++| ++.+ |++|+.|+. ++|+...
T Consensus 338 ~~~~~h~~~v~~l~~s~--dg~~-----l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSS--DGSA-----LCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSSCCCCCCEEEECS--SSSE-----EEEECTTSCEEEEECCS
T ss_pred cccCCCCCceEEEEECC--CCCE-----EEEeeCCCCEEEEecCC
Confidence 68999999999999 7777 999999999 9996553
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.2e-40 Score=316.05 Aligned_cols=328 Identities=12% Similarity=0.124 Sum_probs=252.9
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.+++++|+|+|++|++|+.||.|++||+.+++.. ..+..|.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~----------- 98 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD----------- 98 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence 44568999999999999999999999998876542 2233332
Q ss_pred ccceeEE-EEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 113 EEKINRV-RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 113 ~~~V~~v-~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+..+ .|+ +++++|++++.|+.|++||+.+++.....
T Consensus 99 ---~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------------- 135 (420)
T 3vl1_A 99 ---YTAVDTAK--LQMRRFILGTTEGDIKVLDSNFNLQREID-------------------------------------- 135 (420)
T ss_dssp ---EEEEEEEC--SSSCEEEEEETTSCEEEECTTSCEEEEET--------------------------------------
T ss_pred ---ceEEEEEe--cCCCEEEEEECCCCEEEEeCCCcceeeec--------------------------------------
Confidence 4444 554 78999999999999999999876644322
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|...|.+++|+|++++|++| .|+.|++||++... .... +.+|...|
T Consensus 136 -----------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~-------~~~h~~~v 184 (420)
T 3vl1_A 136 -----------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRT-------LIGHRATV 184 (420)
T ss_dssp -----------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEE-------EECCSSCE
T ss_pred -----------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceE-------EcCCCCcE
Confidence 6899999999999999999999 99999999999443 3332 56899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc-----------ceeeecccceeEEEEeeCC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SFFTEIIASISDIKFANDG 339 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~i~~~~~sp~~ 339 (501)
.+++|+|++ ++|++++.||.|++||+++++.. ..+..+....... .....+...+.+++|+|++
T Consensus 185 ~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 185 TDIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp EEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred EEEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 999999998 99999999999999999987644 3333211111100 0112234667778889999
Q ss_pred CEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCC
Q 010801 340 QHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 416 (501)
++|++++ ++.|++||+++ ++.+..+. .|...+ ++++|+|+++ +|++|+.||.|++||+.++
T Consensus 260 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEEEEEETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CEEEEEcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999886 59999999986 55555553 344443 7999999999 9999999999999999988
Q ss_pred CcceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eeccccC-----------CcccccccCCCeEEEEEcc
Q 010801 417 SAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 417 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-----------~~~~~~~~~~~i~~~~~sp 483 (501)
+.....+.. |...+..+.+ + ++.+ |++++.|+. ++|+... .......+...|.+++|+|
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~-~--~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYF-A--AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEE-E--TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred cCchhhhhccCCCCceEEEe-C--CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 665677777 5666777754 4 4566 899999999 9995432 1123446778999999999
Q ss_pred CCC----EEEEeeCCeEEEEeC
Q 010801 484 TTN----LIACANGNSLFFHYA 501 (501)
Q Consensus 484 ~~~----~la~~~~~~~~i~~~ 501 (501)
+++ ++++|..+.+.+|+.
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEES
T ss_pred CCCCcceEEEEcCCceEEEEec
Confidence 999 777777888999973
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=314.23 Aligned_cols=329 Identities=15% Similarity=0.169 Sum_probs=256.8
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEe----cCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc---
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--- 99 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 99 (501)
...|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.. ..+ .....+...+.+
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSAS 103 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC--
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------ccccccccccccccc
Confidence 345779999999999999 9999999999999999 766420 000 001111122222
Q ss_pred ---CCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 100 ---HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 100 ---h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
|. +.|++++|+ |++++|++++.|+.|++|| .+++....
T Consensus 104 ~~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~i~~-~~~~~~~~------------------------ 144 (425)
T 1r5m_A 104 SGKTT------------NQVTCLAWS--HDGNSIVTGVENGELRLWN-KTGALLNV------------------------ 144 (425)
T ss_dssp ----C------------BCEEEEEEC--TTSSEEEEEETTSCEEEEE-TTSCEEEE------------------------
T ss_pred ccCCC------------CceEEEEEc--CCCCEEEEEeCCCeEEEEe-CCCCeeee------------------------
Confidence 45 789999998 7899999999999999999 33332222
Q ss_pred CCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
+ ..|...|.+++|+|++++|+++ .|+.|++||+. .+.....
T Consensus 145 ------------------------------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~ 186 (425)
T 1r5m_A 145 ------------------------------------L-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQH 186 (425)
T ss_dssp ------------------------------------E-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEE
T ss_pred ------------------------------------c-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEE
Confidence 1 6788999999999999999998 99999999998 4444443
Q ss_pred eecCCCCCCCcccc---------------eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 256 VDMKPSNMDDLTEV---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 256 ~~~~~~~~~~~~~~---------------v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
+..+... +.+++|+|++ .+++++.||.|++||+++++.. ..+.
T Consensus 187 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~--------- 244 (425)
T 1r5m_A 187 -------FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLI--------- 244 (425)
T ss_dssp -------ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEEC---------
T ss_pred -------eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeec---------
Confidence 2333333 8899999985 5888999999999999886533 2332
Q ss_pred ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 321 SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+|...|.+++|+|++++|++++ ++.|++||++. ++.+..+..|...+ .+++|+|++ +|
T Consensus 245 ----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l 303 (425)
T 1r5m_A 245 ----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KV 303 (425)
T ss_dssp ----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EE
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EE
Confidence 3568899999999999999886 59999999986 77888888777655 799999999 99
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--C------------
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G------------ 464 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~------------ 464 (501)
++++.||.|++||+.++ .....+..|...+.+++++| ++.+ |++++.++. .+|+.. .
T Consensus 304 ~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC-----------
T ss_pred EEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 99999999999999987 45578889999999999998 6777 999999999 999443 2
Q ss_pred --------CcccccccCC--CeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 465 --------HHELSYNLSS--KLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 465 --------~~~~~~~~~~--~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
.......+.. .|++++|+|++++|++++.|+ +++|+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 3444556655 999999999999999988655 999973
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=301.47 Aligned_cols=295 Identities=15% Similarity=0.202 Sum_probs=217.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-cc-CCcchhhc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYL 107 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~ 107 (501)
.|.+.|++++|+|+ +||+|+.|++|+|||+.++.. .....+ .+ |.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~------ 58 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK------ 58 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC------
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc------
Confidence 68999999999987 999999999999999886521 233444 34 88
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ |++++|++++.|++|++|++........
T Consensus 59 ------~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~----------------------------------- 95 (330)
T 2hes_X 59 ------KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTF----------------------------------- 95 (330)
T ss_dssp ------SCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------C-----------------------------------
T ss_pred ------CCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccc-----------------------------------
Confidence 889999998 7899999999999999999864321000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC---eeeeeeecCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNM 263 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~ 263 (501)
...+...+ .+|...|.+++|+|++++|++| .|++|++||++..+ +++.. +
T Consensus 96 ------------------~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~-------~ 149 (330)
T 2hes_X 96 ------------------EMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV-------L 149 (330)
T ss_dssp ------------------CCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE-------E
T ss_pred ------------------cceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE-------e
Confidence 01222333 7899999999999999999999 99999999995332 22332 6
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~ 341 (501)
.+|...|.+++|+|++ ++|++++.|+.|++||..++... .... +.+|...|.+++|+|+ +.+
T Consensus 150 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~~~-------------~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CVAV-------------LNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EEEE-------------ECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EEEE-------------ccCCCCcEEEEEecCCCCeeE
Confidence 7899999999999998 99999999999999998765211 0122 3457889999999998 678
Q ss_pred EEEEc-CCcEEEEEeeCCC-------CceeEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 342 LLSRD-YMNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
|++++ |++|++||++... .....+.. |...+ ++++|++++ +|++++.||.|+||+
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 88875 6999999997421 12223332 44433 799999765 899999999999999
Q ss_pred cCCCCc--ceEEEecccC-cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 413 HGVGSA--GGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 413 ~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
..++.. ....+.+|.. .+.+++++|..++.+ |++|+.|+. ++|+..
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI-----LATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----CC-----EEEEETTSEEEEEEC-
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCceE-----EEEecCCCcEEEEEec
Confidence 987632 2233467877 899999998656777 999999999 999543
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-39 Score=353.89 Aligned_cols=395 Identities=14% Similarity=0.163 Sum_probs=289.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~---------------------------~~~~~~~~-------- 699 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL---------------------------VHTYDEHS-------- 699 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce---------------------------EEEEcCCC--------
Confidence 5899999999999999999999999999999987753 46788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+|..++.++++++.|+.|++||+.+++....... +.+.+..+.+.++...++++.
T Consensus 700 ----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 700 ----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-------------HTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp ----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-------------CSSCEEEEEECSSTTEEEEEE
T ss_pred ----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-------------CCCCEEEEEEecCCCEEEEEE
Confidence 889999998554677899999999999999999886655432 123344445555555555554
Q ss_pred eccCcceEEEeccCceee---------------------------------------------------eeeEeecCCcc
Q 010801 190 WTENMATKIANVGNSVHA---------------------------------------------------RCQKVYPHAHD 218 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 218 (501)
. ++.+++||+...... .....+..+|.
T Consensus 763 ~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 763 A--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp S--SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred C--CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 3 566667766543211 12222324788
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
..|.+++|+|+++.++++ .|+.|++||+.+ +..... +.+|...|.+++|+|++ +.|++++.||.|++||+
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEH
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-Cceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEc
Confidence 999999999999999999 999999999994 444443 67899999999999999 99999999999999997
Q ss_pred cCCcccc----------------------------------------------------------------cccceeecc
Q 010801 298 RQSALCD----------------------------------------------------------------HSARILRDA 313 (501)
Q Consensus 298 ~~~~~~~----------------------------------------------------------------~~~~~~~~~ 313 (501)
.+..... ..+.++..
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~- 990 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL- 990 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET-
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc-
Confidence 6421000 00011111
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccc------------------
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK------------------ 374 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~------------------ 374 (501)
........+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++... +..|...+..
T Consensus 991 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 991 -PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp -TTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred -CCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 00111223467889999999999999999885 59999999864 33221 1122111110
Q ss_pred -ccccCCCCC-------cceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcc
Q 010801 375 -LCDLYNNDS-------IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 446 (501)
Q Consensus 375 -~~~~~~~~~-------~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 446 (501)
++++..... ...+++++|+|++++|++++.||.|++||+.++.. ...+.+|...|.+++|+| ++++
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~--dg~~--- 1141 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSL--DGIL--- 1141 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECS--SSSE---
T ss_pred EEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECC--CCCE---
Confidence 011110000 01237899999999999999999999999998854 478899999999999999 7778
Q ss_pred ceeeeecccce-eecccc--CCcccc---------cccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 447 SNLTRGLYRQA-HENSSS--GHHELS---------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~--~~~~~~---------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
|++|+.|+. .+|+.. +..... ..|...|++++|+||+++|++++ +.+++|+
T Consensus 1142 --lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1142 --LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp --EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred --EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 999999999 999544 232222 46788999999999999999886 7899997
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-39 Score=308.14 Aligned_cols=300 Identities=15% Similarity=0.160 Sum_probs=240.5
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
...+...+++|. +.|++++|+ |++++|++|+.|++|++||+.+++.....
T Consensus 55 ~~~~~~~l~gH~------------~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~---------------- 104 (380)
T 3iz6_a 55 DLVCCRTLQGHS------------GKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAI---------------- 104 (380)
T ss_dssp CCEEEEEECCCS------------SCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEE----------------
T ss_pred eeEEeecccccc------------cEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEE----------------
Confidence 445668899999 999999998 78999999999999999999887644332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|...|.+++|+|++++|++| .|+.+++||+..
T Consensus 105 ---------------------------------------------~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 105 ---------------------------------------------KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp ---------------------------------------------ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ---------------------------------------------ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 5788899999999999999999 999999999874
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
........ .....+.+|...|.++.|.|+++..|++++.|++|++||+++++.. ..+.. ....+|..
T Consensus 140 ~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~ 206 (380)
T 3iz6_a 140 QADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTA 206 (380)
T ss_dssp CSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCS
T ss_pred CccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCcc
Confidence 32110000 0012367899999999999986478999999999999999987643 22211 01235788
Q ss_pred ceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 329 SISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 329 ~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.|.+++|+| ++++|++|+ |+.|++||++...+.+..+.+|...+ ++++|+|++++|++|+.||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSS
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCC
Confidence 999999987 788999886 69999999985567888899998876 7999999999999999999
Q ss_pred eEEEEecCCCCcceEEEeccc-------CcccceeeccCCccccCccceeeeecccce-eecccc--CCcccc----ccc
Q 010801 407 LLRIFSHGVGSAGGITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELS----YNL 472 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~----~~~ 472 (501)
+|++||+.++..+ ..+..+. ..+.+++|+| ++++ |++|+.++. .+|+.. +..... ..|
T Consensus 272 ~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 272 TCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp CEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred eEEEEECCCCcEE-EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999999988443 4444432 2478999998 7788 999999999 999543 222222 578
Q ss_pred CCCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
...|++++|+|+|++||+|+.| .+++|+
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 9999999999999999999955 599997
No 31
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-40 Score=320.82 Aligned_cols=336 Identities=12% Similarity=0.050 Sum_probs=235.8
Q ss_pred ccccccceEEEEEccCC---------CEEEEE-------------------ecCCcEEEEEecCCcCCCCccchhhhhhh
Q 010801 28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSELEK 79 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g---------~~latg-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (501)
.+.+.+.|.+|+|+|++ ++||+| +.|++|+||++.+++..
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------ 196 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------ 196 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence 34567899999999986 677774 46789999999877541
Q ss_pred ccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec----CCCCEEEEeeCCCeEEEEeccccceeeeecc
Q 010801 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (501)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~----~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~ 155 (501)
......+.+|. +.|.+|+|+|. +++.+|++++.||+|++||+.++........
T Consensus 197 -----------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 197 -----------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp -----------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred -----------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 11223456777 88999999964 3467999999999999999986542100000
Q ss_pred CCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE
Q 010801 156 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS 235 (501)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 235 (501)
. ...+...+ .+|...|++++|++++ .|++
T Consensus 254 ~-------------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 254 M-------------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp C-------------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEE
T ss_pred e-------------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEE
Confidence 0 00111222 6889999999999865 7888
Q ss_pred E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE--EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
| .||+|++||++........ +.+|...|+++ .|+|++.++|++++.|++|++||+++++.. ..+..
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~ 351 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVS 351 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEE
T ss_pred EeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----ccccc
Confidence 8 9999999999854333322 57899999999 567764378999999999999999986543 33333
Q ss_pred ccccCCCcceeeecc--cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeE
Q 010801 313 AAESHGSKSFFTEII--ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~--~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
|. ..|.+++|+|+++.+++++ |++|++||++. +..+..+.+|...+ ++
T Consensus 352 -------------~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~s 402 (524)
T 2j04_B 352 -------------RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TA 402 (524)
T ss_dssp -------------ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EE
T ss_pred -------------ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EE
Confidence 22 2478999999999998875 58999999986 77778888888876 89
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-----ccCcccceeeccCCccccCccceeeeecccceeec--c-
Q 010801 390 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S- 461 (501)
Q Consensus 390 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw--~- 461 (501)
++|+|++++|++|+.||+|+|||+... .+ ...+. +...++.++++| ++.. + .. .+...+| .
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~-~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~~-~~~~~~~~~~~ 471 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARR-LL-HGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-RI-DSSYEVYPLTV 471 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSS-TT-TCC------CCCCEEEECBCCS--SSCE-----E-EE-CCCCCCCC---
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHh-hc-cccccCccceeeeEEEEeccCC--CCCe-----E-Ec-cCCceeccccc
Confidence 999999999999999999999998654 22 22111 112467888887 4433 2 11 2222444 2
Q ss_pred ccCCcccccccCCCeEEEEEccCCC---EEEEeeCC-eEEEEe
Q 010801 462 SSGHHELSYNLSSKLLHLAWHPTTN---LIACANGN-SLFFHY 500 (501)
Q Consensus 462 ~~~~~~~~~~~~~~i~~~~~sp~~~---~la~~~~~-~~~i~~ 500 (501)
.+.....+.+|...|.+++|||+++ +||+|+.+ .++||.
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 2445566778999999999999965 99999975 499996
No 32
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.4e-38 Score=317.92 Aligned_cols=385 Identities=11% Similarity=0.099 Sum_probs=288.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence 35789999999999999999998 88999999987611 112347788998
Q ss_pred ccccccc-eeEEEEeecC--CCCEEEEeeCCCeEEEEecccc------ceeeeeccCCCcccccccccccccCccccCCC
Q 010801 109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (501)
Q Consensus 109 ~~~~~~~-V~~v~~~~~~--~~~~l~s~s~d~~i~lw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
+. |++++|+ | ++++|++++.||.|++||+.++ ........ ..+...+..+.+.
T Consensus 64 -----~~~v~~~~~s--p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s 125 (615)
T 1pgu_A 64 -----SSVVTTVKFS--PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-----------QVLAGPISDISWD 125 (615)
T ss_dssp -----TSCEEEEEEC--SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-----------ECCSSCEEEEEEC
T ss_pred -----CceEEEEEEC--cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-----------hcccccEEEEEEe
Confidence 88 9999998 7 8999999999999999999755 22221111 1123456677777
Q ss_pred CCCcccccceeccC--cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeee
Q 010801 180 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 180 ~~~~~~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
++...++.+....+ +.+.+|+.. +....+ .+|...|.+++|+|+++ .++++ .|+.|++||+. ..+....
T Consensus 126 ~~~~~l~~~~~~~~~~~~v~~~d~~-----~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~ 198 (615)
T 1pgu_A 126 FEGRRLCVVGEGRDNFGVFISWDSG-----NSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS 198 (615)
T ss_dssp TTSSEEEEEECCSSCSEEEEETTTC-----CEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred CCCCEEEEeccCCCCccEEEEEECC-----Ccceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence 88888777764322 577777732 344555 78999999999999998 78888 99999999998 4444443
Q ss_pred eecCCCCCCCccc---ceEEEEEecC-CCcEEEEEeCCCeEEEEEccCCccccccccee-ecccccCCCcceeeecccce
Q 010801 256 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 256 ~~~~~~~~~~~~~---~v~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~i 330 (501)
+.+|.. .|.+++|+|+ + ++|++++.||.|++||+++++.. ..+ .. ..+|...|
T Consensus 199 -------~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v 256 (615)
T 1pgu_A 199 -------DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGI 256 (615)
T ss_dssp -------ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCE
T ss_pred -------ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCce
Confidence 567888 9999999999 8 99999999999999999887543 222 10 00356789
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-----------------------------------------
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH----------------------------------------- 368 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~----------------------------------------- 368 (501)
.+++|+ ++++|++++ ++.|++||+++ ++.+..+..+
T Consensus 257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 257 FALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 999999 888888875 58999999864 4433333222
Q ss_pred ----cccccc----------------------------------------------------cccc--------------
Q 010801 369 ----EHLRPK----------------------------------------------------LCDL-------------- 378 (501)
Q Consensus 369 ----~~~~~~----------------------------------------------------~~~~-------------- 378 (501)
...+.. ++++
T Consensus 335 ~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 414 (615)
T 1pgu_A 335 ISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 414 (615)
T ss_dssp ECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred EeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence 100000 0000
Q ss_pred --------------------------------------------------------------------CCCCCcceeeEE
Q 010801 379 --------------------------------------------------------------------YNNDSIFDKFEC 390 (501)
Q Consensus 379 --------------------------------------------------------------------~~~~~~~~~~~~ 390 (501)
.-......++++
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494 (615)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence 000011135789
Q ss_pred EEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-ccCcccceeeccCC--------ccccCccceeeeecccce-eec
Q 010801 391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 391 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|+|++++|++++.||.|++||+.+++. ...+.+ |...+.+++|+|.. ++++ |++++.|+. ++|
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw 568 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIY 568 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEE
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEE
Confidence 9999999999999999999999998844 466676 99999999999832 5667 999999999 999
Q ss_pred ccc---CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 461 SSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 461 ~~~---~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
+.. ........|...|++++|+|+++ |++++.|+ +++|+
T Consensus 569 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 569 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp ESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 554 34555678999999999999999 88888555 99997
No 33
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.5e-38 Score=295.08 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=228.9
Q ss_pred ccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+|.+.|++|+|+|+ +++||||+.||+|+|||+.+++.. ...+...+++|.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~------- 86 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS------- 86 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-------
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-------
Confidence 69999999999997 689999999999999999876542 344567889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++|+.............. .........+....++++
T Consensus 87 -----~~V~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~ 146 (340)
T 4aow_A 87 -----HFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-------------KDVLSVAFSSDNRQIVSG 146 (340)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SCEEEEEECTTSSCEEEE
T ss_pred -----CCEEEEEEC--CCCCEEEEEcccccceEEeecccceeeeecCCC-------------CceeEEEEeecCccceee
Confidence 899999998 899999999999999999998876555442221 222233344455556555
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.. ++.+++|+...... ......+|...+..++|++++ .+++++ .|+.|++||+. ..+.... +.+
T Consensus 147 s~--d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~~~ 213 (340)
T 4aow_A 147 SR--DKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------HIG 213 (340)
T ss_dssp ET--TSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------ECC
T ss_pred cC--CCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------ecC
Confidence 43 88999999875322 222237899999999998764 467777 99999999999 4444443 678
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|++++|+|++ ++|++++.||.|++||+++.+.. ..+.. ...+..+.|+|++.+++++
T Consensus 214 h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 214 HTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeecc
Confidence 99999999999999 99999999999999999987543 33333 3579999999999888888
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.|+.|++||++. ...+..+..+..... ...+.. .|++++|+|+|++|++|+.||.|+|||+++|.
T Consensus 275 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~---~~~h~~---~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEG-KIIVDELKQEVISTS---SKAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTT-TEEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCC-CeEEEeccccceeee---ccCCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 889999999975 555555543221100 000111 23799999999999999999999999999884
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-38 Score=297.42 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=236.7
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
+....+++|. +.|++++|+ |++.+|++|+.|++|++||..+++.....
T Consensus 55 ~~~~~l~gH~------------~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~------------------ 102 (354)
T 2pbi_B 55 KTRRTLKGHG------------NKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHAV------------------ 102 (354)
T ss_dssp CEEEEEECCS------------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE------------------
T ss_pred EEEEEecCCC------------CeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceEE------------------
Confidence 4567889999 999999998 78999999999999999998876644322
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
..|...|.+++|+|++..+++| .|+.+++|++....
T Consensus 103 -------------------------------------------~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 103 -------------------------------------------TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp -------------------------------------------ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred -------------------------------------------ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 4567789999999999999999 99999999987332
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
..... .....+..|...|.+++|+|++ ..|++++.|++|++||+++++.. ..+ .+|...|
T Consensus 140 ~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~~-------------~~h~~~v 199 (354)
T 2pbi_B 140 NENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QSF-------------HGHGADV 199 (354)
T ss_dssp TCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCE
T ss_pred ccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EEE-------------cCCCCCe
Confidence 10000 0011256799999999999998 99999999999999999987543 333 3467889
Q ss_pred eEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 331 SDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 331 ~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
.+++|+| ++++|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++.+|++|+.|++
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDV---------------NSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCe---------------EEEEEeCCCCEEEEEeCCCe
Confidence 9999988 578999885 69999999986 88888898888765 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEecc--cCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEc
Q 010801 408 LRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~s 482 (501)
|++||+..+... ..+..+ ...+.+++|+| ++++ |++|+.|+. ++|+. +.......+|...|++++|+
T Consensus 264 v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 264 CRLYDLRADREV-AIYSKESIIFGASSVDFSL--SGRL-----LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCCCcEE-EEEcCCCcccceeEEEEeC--CCCE-----EEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 999999877433 344332 34677889988 7777 999999999 99954 34455667899999999999
Q ss_pred cCCCEEEEeeCCe-EEEEe
Q 010801 483 PTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~~-~~i~~ 500 (501)
|++++||+++.|+ +++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999999554 99985
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.6e-38 Score=330.80 Aligned_cols=323 Identities=16% Similarity=0.169 Sum_probs=264.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------------~~~~~~~~-------- 55 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------------VRSIQVTE-------- 55 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS--------
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------EEEEecCC--------
Confidence 6899999999999999999999999999999987643 46778898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.||.|++||+.+++.....
T Consensus 56 ----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------------------------------------ 93 (814)
T 3mkq_A 56 ----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------------------------ 93 (814)
T ss_dssp ----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------------------------
Confidence 899999998 78999999999999999999987754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|++++|+|+++.|+++ .|+.|++||+......... +.+|..
T Consensus 94 -------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~ 141 (814)
T 3mkq_A 94 -------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEH 141 (814)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSS
T ss_pred -------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCC
Confidence 5788999999999999999999 9999999999855455443 567899
Q ss_pred ceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEE
Q 010801 269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSR 345 (501)
Q Consensus 269 ~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~ 345 (501)
.|.+++|+| ++ +.|++++.||.|++||+.++... ..+.. .|...+..++|+| ++.+|+++
T Consensus 142 ~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 142 FVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCCCEEEECCSTTCCEEEEE
T ss_pred cEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec------------CCCCCEEEEEEEECCCCCEEEEE
Confidence 999999999 76 89999999999999999876533 22222 1346899999999 99999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ ++.|++||+++ ++.+..+.+|...+ .+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 205 ~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~ 267 (814)
T 3mkq_A 205 SDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN 267 (814)
T ss_dssp CTTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred eCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee
Confidence 6 59999999986 78888888887765 78999999999999999999999999987 4458889
Q ss_pred cccCcccceeeccCCccccCccceeeeecccceeeccccCCc--------------------------------------
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHH-------------------------------------- 466 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~-------------------------------------- 466 (501)
.|...+.+++++|.....+ ++++..++..+|......
T Consensus 268 ~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp CSSSSEEEEEECTTCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred cCCCcEEEEEEccCCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 9999999999999532223 555554444555322100
Q ss_pred -------ccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 467 -------ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 467 -------~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.....+...+.+++|+|+|++|++++++.+++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~ 383 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT 383 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence 0012234467899999999999999998899986
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=295.45 Aligned_cols=249 Identities=18% Similarity=0.221 Sum_probs=200.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|...|++++|+|++ .|++|+.||+|+|||+.+++.. ......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence 3467789999999986 6889999999999999988652 22334566898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++|+|+ |++++|++|+.|++|++||+.+++.....
T Consensus 128 -----~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------------------------------- 165 (344)
T 4gqb_B 128 -----DIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSY----------------------------------- 165 (344)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 899999998 89999999999999999999987755432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+|++. +|++| .|++|++||+++.. ....+ ....+
T Consensus 166 --------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~-----~~~~~ 213 (344)
T 4gqb_B 166 --------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQI-----GCSAP 213 (344)
T ss_dssp --------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEEC-----C----
T ss_pred --------------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeee-----eccee
Confidence 78999999999999885 67888 99999999999544 33321 13456
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
...+.+++|+|++.++|++|+.||.|++||+++++.. ..+ .+|...|.+++|+|++ ++|++|
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~-------------~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSS-------------AVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEE-------------ECCSSCEEEEEECSSSSCCEEEE
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEccCCCeEEEEE
Confidence 6779999999976589999999999999999987543 333 3477899999999998 578887
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++|+|||+++ ++ +..+.+|...+ ++++|+|+++ +|++++.||+|++|++.+.
T Consensus 277 s~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred eCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 5 69999999975 44 45677888765 7999999986 6779999999999999865
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-38 Score=308.91 Aligned_cols=296 Identities=15% Similarity=0.163 Sum_probs=220.1
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------- 164 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------- 164 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence 4788899999999 5679999999999999999877542 445577898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++|+|+| .++.+|++++.||+|++||++++........
T Consensus 165 -----~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------------------------- 205 (435)
T 4e54_B 165 -----GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS--------------------------------- 205 (435)
T ss_dssp -----CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC---------------------------------
T ss_pred -----CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc---------------------------------
Confidence 8999999984 3678999999999999999987654332210
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+...+.+++|+|++++|++| .|+.|++||++ ++.. . .+.+|.
T Consensus 206 --------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~-~-------~~~~h~ 250 (435)
T 4e54_B 206 --------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL-W-------NLRMHK 250 (435)
T ss_dssp --------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC-C-------CSBCCS
T ss_pred --------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee-E-------EEeccc
Confidence 2445567889999999999999 99999999998 4332 2 377899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.+++|+|++..+|++++.|+.|++||+++.+... .+. ...+|...|.+++|+|+|++|++++
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~----------~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SFL----------YSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CCS----------BCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccc----eEE----------EeeeccccccceeECCCCCeeEEEcC
Confidence 9999999999985689999999999999998765331 111 1235778999999999999999986
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe------------CCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~------------~dg~i~iwd~~ 414 (501)
|+.|+|||+.+ +.....+..|....... .. .....|+|++.++++++ .++.|++||..
T Consensus 317 D~~i~iwd~~~-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 317 KSEIRVYSASQ-WDCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp SSCEEEEESSS-SSSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred CCEEEEEECCC-CccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 69999999986 67666666655321100 00 13456777766666654 23578899888
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEE-EEccCCCEEEEeeC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANG 493 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~-~~sp~~~~la~~~~ 493 (501)
+++.+.....+| ...|.++ +|||+|++||+|++
T Consensus 387 ~g~~~~~l~~~~----------------------------------------------~~~v~s~~~fspdg~~lasg~d 420 (435)
T 4e54_B 387 SGKMMCQLYDPE----------------------------------------------SSGISSLNEFNPMGDTLASAMG 420 (435)
T ss_dssp SCCEEEEECCSS----------------------------------------------CCCCCCEEEECTTSSCEEEECS
T ss_pred CCcEEEEEeCCC----------------------------------------------CCcEEEEEEECCCCCEEEEEcC
Confidence 774432111222 2244454 68888888888887
Q ss_pred CeEEEEeC
Q 010801 494 NSLFFHYA 501 (501)
Q Consensus 494 ~~~~i~~~ 501 (501)
+.++||+.
T Consensus 421 ~~i~iW~~ 428 (435)
T 4e54_B 421 YHILIWSQ 428 (435)
T ss_dssp SEEEECCC
T ss_pred CcEEEEEC
Confidence 78888863
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-38 Score=296.25 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=256.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.++|.+++|+|||+++|++..++.+.+|..... .......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~h~-------- 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH---------------------------ARQINTLNHG-------- 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE---------------------------EEEEEEECCS--------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc---------------------------cccceeccCC--------
Confidence 35788999999999999999887776655543321 1123334788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ ++++++++++ |+.|++|++.++......
T Consensus 52 ----~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~------------------------------------ 88 (337)
T 1gxr_A 52 ----EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------------------------ 88 (337)
T ss_dssp ----SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCS------------------------------------
T ss_pred ----CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeee------------------------------------
Confidence 889999998 7899999998 999999999876522111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.... ...|...|.+++|+|++++|+++ .|+.|++||++........ .+..|..
T Consensus 89 ------------------~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~ 142 (337)
T 1gxr_A 89 ------------------SQLD--CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAP 142 (337)
T ss_dssp ------------------EEEE--CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------EEECSSS
T ss_pred ------------------eccc--ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------ecccCCC
Confidence 0000 13788999999999999999999 9999999999854422211 2567888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||+++++.. ..+. +|...+.+++|+|++++|++++ +
T Consensus 143 ~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 143 ACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQ-------------GHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee----eeee-------------cccCceEEEEECCCCCEEEEEecC
Confidence 99999999998 99999999999999999887543 2332 3678899999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||+++ ++.+..+. +...+ .+++|+|++++|++++.||.|++||+.+++ ...+..|.
T Consensus 205 g~i~~~d~~~-~~~~~~~~-~~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~ 265 (337)
T 1gxr_A 205 NTVRSWDLRE-GRQLQQHD-FTSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHE 265 (337)
T ss_dssp SEEEEEETTT-TEEEEEEE-CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCS
T ss_pred CcEEEEECCC-CceEeeec-CCCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCc
Confidence 9999999985 66666654 33322 789999999999999999999999998774 35788999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccC-CcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..+..++++| ++++ |++++.++. .+|+... .......+...|.+++|+|++++|++++.|+ +++|+
T Consensus 266 ~~v~~~~~~~--~~~~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 266 SCVLSLKFAY--CGKW-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp SCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cceeEEEECC--CCCE-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999998 6777 999999999 9995542 2223456888999999999999999998655 99996
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=290.46 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=220.4
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.+....+++|. +.|++++|+ ++ +|++++.|++|++|++..+.....
T Consensus 4 ~~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~------------------ 49 (330)
T 2hes_X 4 INLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLI------------------ 49 (330)
T ss_dssp CEEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEE------------------
T ss_pred cccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEE------------------
Confidence 44667889999 899999997 44 999999999999999986532111
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEee-cCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..+ ..+|...|.+++|+|++++|++| .|++|++||++.
T Consensus 50 ----------------------------------------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 50 ----------------------------------------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp ----------------------------------------EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred ----------------------------------------EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 111 03489999999999999999999 999999999863
Q ss_pred CC------eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 249 SD------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 249 ~~------~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.. .... .+.+|...|.+++|+|++ ++|++++.|+.|++||++...........
T Consensus 90 ~~~~~~~~~~~~-------~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~------------- 148 (330)
T 2hes_X 90 SADRTFEMDLLA-------IIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV------------- 148 (330)
T ss_dssp -----CCCEEEE-------EEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE-------------
T ss_pred CcCccccceeEE-------EEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE-------------
Confidence 21 2222 267899999999999999 99999999999999999543211111122
Q ss_pred eeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCC--Cc
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GL 397 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~ 397 (501)
+.+|...|.+++|+|++++|++++ |++|++||... + +++..+.+|...+ .+++|+|+ +.
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~ 212 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTV---------------WSSDFDKTEGVF 212 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECCSSSSC
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCcE---------------EEEEecCCCCee
Confidence 345788999999999999999986 69999999975 4 5677888888765 79999998 77
Q ss_pred EEEEEeCCCeEEEEecCCCCc-------ceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eeccccCC---
Q 010801 398 HFATGSYSNLLRIFSHGVGSA-------GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--- 465 (501)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~--- 465 (501)
+|++|+.|++|++||+..+.. ....+.. |...|.++++++ ++ + |++++.|+. ++|+....
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceE
Confidence 999999999999999875421 1233444 899999999985 33 5 899999999 99955421
Q ss_pred -c-ccccccCC-CeEEEEEcc--CCCEEEEeeCCe-EEEEeC
Q 010801 466 -H-ELSYNLSS-KLLHLAWHP--TTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 466 -~-~~~~~~~~-~i~~~~~sp--~~~~la~~~~~~-~~i~~~ 501 (501)
. .....|.. .|++++|+| ++++||+++.|+ +++|+.
T Consensus 285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 1 12346766 899999999 689999998655 999973
No 40
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-37 Score=317.30 Aligned_cols=307 Identities=14% Similarity=0.191 Sum_probs=232.3
Q ss_pred ccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+|++ ++|++|+.||+|+||++.+.... .......+.+|.
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~------- 430 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS------- 430 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-------
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-------
Confidence 699999999999864 79999999999999998865431 223456788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++++|++|+.|++|++||+.+++.....
T Consensus 431 -----~~v~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~----------------------------------- 468 (694)
T 3dm0_A 431 -----HFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRF----------------------------------- 468 (694)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCcceeEE-----------------------------------
Confidence 899999998 89999999999999999999887644322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++++|++| .|++|++||.. ....... .....+|.
T Consensus 469 --------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~----~~~~~~h~ 517 (694)
T 3dm0_A 469 --------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTI----SEGGEGHR 517 (694)
T ss_dssp --------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE----CSSTTSCS
T ss_pred --------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceee----ccCCCCCC
Confidence 6899999999999999999999 99999999987 3332222 11246788
Q ss_pred cceEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ...|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|++++|++++
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STL-------------AGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEeCCCCEEEEEe
Confidence 999999999986 248999999999999999876532 223 44788999999999999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++.+..+..+.. + .+++|+|++.+|++++ |+.|+|||+.++.. ...+..
T Consensus 581 ~Dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~-~~~~~~ 641 (694)
T 3dm0_A 581 KDGVVLLWDLAE-GKKLYSLEANSV-I---------------HALCFSPNRYWLCAAT-EHGIKIWDLESKSI-VEDLKV 641 (694)
T ss_dssp TTSBCEEEETTT-TEEEECCBCSSC-E---------------EEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEECC
T ss_pred CCCeEEEEECCC-CceEEEecCCCc-E---------------EEEEEcCCCcEEEEEc-CCCEEEEECCCCCC-hhhhcc
Confidence 69999999986 776666654332 2 7899999999888766 46699999998733 344443
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
+........... + ......+.-.+++++|+|+|++|++|+.|+ ++||+.
T Consensus 642 ~~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 642 DLKAEAEKADNS---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp CCC-------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccccccccccc---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 322110000000 0 000011122578999999999999999655 999973
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-37 Score=284.74 Aligned_cols=257 Identities=15% Similarity=0.222 Sum_probs=200.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+....+.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence 3689999999999999999999999999999987542 12447789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++++.|++|++||+.+++....
T Consensus 54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 92 (297)
T 2pm7_B 54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------ 92 (297)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence 899999998433588999999999999999987642211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ +.+|++| .|+.|++||++........ .+.+
T Consensus 93 ----------------------~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------~~~~ 143 (297)
T 2pm7_B 93 ----------------------AVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------IIDA 143 (297)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------EEEC
T ss_pred ----------------------EEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------eeec
Confidence 111 578899999999997 8899999 9999999999844322111 2567
Q ss_pred cccceEEEEEecCC------------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 266 LTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 266 ~~~~v~~v~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
|...|.+++|+|++ .++|++|+.|+.|++||++++........ .+.+|...|.++
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-------------~l~~H~~~V~~v 210 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------------TLEGHSDWVRDV 210 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-------------EECCCSSCEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-------------EecCCCCceEEE
Confidence 99999999999972 16999999999999999987542110111 235688999999
Q ss_pred EEeeCC---CEEEEEc-CCcEEEEEeeCCCCc--eeEe--eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 334 KFANDG---QHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 334 ~~sp~~---~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
+|+|++ ++|++++ |++|++||++..... ...+ ..|...+ .+++|+|++++||+++.|
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEETT
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE---------------EEEEECCCCCEEEEEcCC
Confidence 999985 7899886 699999999752211 1122 2233322 789999999999999999
Q ss_pred CeEEEEecCC
Q 010801 406 NLLRIFSHGV 415 (501)
Q Consensus 406 g~i~iwd~~~ 415 (501)
|.|+||+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999863
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-36 Score=288.38 Aligned_cols=327 Identities=13% Similarity=0.127 Sum_probs=239.2
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.++|++++|+|+|++||+|+.||.|+|||+.+++ .+....+.+|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~--------- 52 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN--------- 52 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence 78999999999999999999999999999998763 23457788898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++......
T Consensus 53 ---~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------------------ 91 (372)
T 1k8k_C 53 ---GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLV------------------------------------ 91 (372)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred ---CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeEE------------------------------------
Confidence 899999998 789999999999999999998776433221
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee--eeeeecCCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 267 (501)
...|...|.+++|+|++++|+++ .|+.|++||++..... ... ....|.
T Consensus 92 -----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~ 142 (372)
T 1k8k_C 92 -----------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIR 142 (372)
T ss_dssp -----------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCC
T ss_pred -----------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccC
Confidence 15788899999999999999999 9999999999854421 121 146688
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc-eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ++|++++.||.|++||++.......... .+............+.+|...|.+++|+|++++|++++
T Consensus 143 ~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 143 STVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999999998 9999999999999999864322110000 00000000011122446788999999999999999886
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC--CCcc-eEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG-GIT 422 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~-~~~ 422 (501)
|+.|++||+++ ++++..+..|...+ .+++|+|++++|++| .|+.|++|++.+ +... ...
T Consensus 222 ~d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 222 HDSTVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp TTTEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCC
T ss_pred CCCEEEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeec
Confidence 59999999986 88888898887654 789999999988888 999999999987 4211 011
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eec---cccCCc-------ccc-cccCCCeEEEEEc-cCC---C
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHH-------ELS-YNLSSKLLHLAWH-PTT---N 486 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw---~~~~~~-------~~~-~~~~~~i~~~~~s-p~~---~ 486 (501)
+..+... ....... .+| ...... ... .+|...|++++|+ ++| +
T Consensus 285 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 285 LDVPKQS---------------------SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp CCCC-----------------------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred cCccccc---------------------hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 1111000 0000111 223 111111 222 4889999999977 666 8
Q ss_pred EEEEeeCCe-EEEEe
Q 010801 487 LIACANGNS-LFFHY 500 (501)
Q Consensus 487 ~la~~~~~~-~~i~~ 500 (501)
+|++++.|+ +++|+
T Consensus 344 ~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred eEEEecCCCceEEEE
Confidence 999999554 99996
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-37 Score=293.29 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=226.4
Q ss_pred cccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------ 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------ 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence 3589999999999999 99999999999999999877542 223345788
Q ss_pred cccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++|+ | ++.+|++++.|+.|++||+.+........
T Consensus 119 ------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------- 158 (383)
T 3ei3_B 119 ------DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-------------------------------- 158 (383)
T ss_dssp ------CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEEEC--------------------------------
T ss_pred ------CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEEec--------------------------------
Confidence 899999998 6 67899999999999999998643322210
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
. ..|...|.+++|+|++++|++| .|+.|++||++ .. .+.. +.+
T Consensus 159 --------------------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~-------~~~ 202 (383)
T 3ei3_B 159 --------------------------T-DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFK-------EKL 202 (383)
T ss_dssp --------------------------C-CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEE-------EEC
T ss_pred --------------------------c-CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEE-------ecc
Confidence 0 3566889999999999999999 99999999996 43 3332 567
Q ss_pred cccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEE
Q 010801 266 LTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL 343 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~ 343 (501)
|...|.+++|+|++ + +|++++.|+.|++||+++.+........ .+|...|.+++|+| ++++|+
T Consensus 203 h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 203 HKAKVTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAE--------------MPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp SSSCEEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------------EECSSCEEEEEECTTTSCEEE
T ss_pred CCCcEEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEE--------------ecCCCceEEEEEcCCCCCEEE
Confidence 99999999999999 6 9999999999999999975322111111 23678999999999 999999
Q ss_pred EEc-CCcEEEEEeeCCCCceeEeecccccccc-----ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK-----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+++ |+.|++||+++ ++....+.+|...... ...+.... .+..++|+|++++ +|+.||.|+|||+.+++
T Consensus 268 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMY---DLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSS---SEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred EEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCC---CceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 886 59999999986 6666777666432110 00000011 1135677777776 77899999999999874
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 497 (501)
.+ ..+.++. +...+..++|+|++++||+++++.++
T Consensus 342 ~~-~~l~~~~--------------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~ 376 (383)
T 3ei3_B 342 LV-HQLRDPN--------------------------------------------AAGIISLNKFSPTGDVLASGMGFNIL 376 (383)
T ss_dssp EE-EEECBTT--------------------------------------------BCSCCCEEEECTTSSEEEEEETTEEE
T ss_pred ee-eeecCCC--------------------------------------------CCceEEEEEEecCccEEEEecCCcEE
Confidence 42 3333221 12255677999999999999888899
Q ss_pred EEeC
Q 010801 498 FHYA 501 (501)
Q Consensus 498 i~~~ 501 (501)
+|+.
T Consensus 377 iw~~ 380 (383)
T 3ei3_B 377 IWNR 380 (383)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9973
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-36 Score=314.91 Aligned_cols=398 Identities=10% Similarity=0.064 Sum_probs=251.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+.|...|++++|+| |++||+++.|++|+|||+.+++. +..+. |.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~------- 98 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP------- 98 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence 35788999999999 88999999999999999987653 23343 55
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC-ccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (501)
+.|++++|+ |++++|++|+.||+|++||+.++++............ .....+.+.+..+.+++.. ..++.
T Consensus 99 -----~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~--~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 99 -----GKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS--FFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp -----SCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH--TCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred -----CCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccc--cccccCCCCeEEEEEccCCCCEEEE
Confidence 779999998 8999999999999999999998775322100000000 0001123445555665542 34444
Q ss_pred ceeccCcceEEEeccCceeeeeeEeec-----------------CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~-----------------~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
+. .++.+ +||+... ++.+.+. ..|...|++++|+|+|++|++| .|+.|++||++++
T Consensus 170 g~--~dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 170 SY--EYVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EC--SSCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred Ee--CCCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 43 37889 9999874 3344331 1245789999999999999999 9999999999743
Q ss_pred CeeeeeeecCCCCCC-----------CcccceEEEEEec----CCCcEEEEE----------------------------
Q 010801 250 DQCFNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAYS---------------------------- 286 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~-----------~~~~~v~~v~~~p----~~~~~l~~~---------------------------- 286 (501)
. .+....+...... .|...|.+++|++ ++..+|++|
T Consensus 244 ~-~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 244 H-MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp C-EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred c-EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 3 2221000000000 1223344444432 110222222
Q ss_pred ------------------------------------------------eCCCeEEEEEccCCccccc-------------
Q 010801 287 ------------------------------------------------SSRGFVRLVDMRQSALCDH------------- 305 (501)
Q Consensus 287 ------------------------------------------------~~dg~i~~wd~~~~~~~~~------------- 305 (501)
+.||.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 2233344444332211000
Q ss_pred -------------------------------------------------------ccceeecccccCCCccee-------
Q 010801 306 -------------------------------------------------------SARILRDAAESHGSKSFF------- 323 (501)
Q Consensus 306 -------------------------------------------------------~~~~~~~~~~~~~~~~~~------- 323 (501)
.+++|+...........+
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 000000000000000001
Q ss_pred --eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC----------------------------------------
Q 010801 324 --TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST---------------------------------------- 360 (501)
Q Consensus 324 --~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~---------------------------------------- 360 (501)
.+|...|.+++|+|||++||+|+ |++|+|||+.+ ++
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 16788999999999999999986 59999999985 32
Q ss_pred -----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE----EEe-cccCcc
Q 010801 361 -----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVE-AGKNEN 430 (501)
Q Consensus 361 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~-~~~~~v 430 (501)
++..+.+|...+ ++++|+||| +||+|+.|++|+|||++++..+.. .+. +|...|
T Consensus 562 ~~g~~~~~~l~~h~~~V---------------~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKT---------------SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp SEEEEEEEEECCCSCSE---------------EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred CCccceeEEEEcCCCcE---------------EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 244455555544 899999999 999999999999999976633211 232 889999
Q ss_pred cceeec-----cC-CccccCccceeeeecccce-eeccc-----cCCccccccc-----CCCeEEEE-Ec----------
Q 010801 431 RKPILQ-----AA-PRARRSSLSNLTRGLYRQA-HENSS-----SGHHELSYNL-----SSKLLHLA-WH---------- 482 (501)
Q Consensus 431 ~~~~~~-----~~-~~~~~~~~~~l~~~~~~~~-~iw~~-----~~~~~~~~~~-----~~~i~~~~-~s---------- 482 (501)
++++|+ |. .+++. |++|+.|+. ++|+. ++......+| ..+|..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~-----l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSIL-----MVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp EEEEEEEEECTTSSSEEEE-----EEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred EEEEEEEEecCCCCCcceE-----EEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC
Confidence 999999 74 23577 999999999 99964 2222333333 46777776 76
Q ss_pred ------------cCCCEEEEeeCCeEEEEeC
Q 010801 483 ------------PTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 483 ------------p~~~~la~~~~~~~~i~~~ 501 (501)
+++..||+ +++.++||+.
T Consensus 701 ~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~ 730 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIVLIT-GFDDIRLITL 730 (902)
T ss_dssp HHHHHGGGGTCCCCEEEEEE-CSSEEEEECT
T ss_pred HHHHhccCCCCCCCeEEEEE-eccceEEEeC
Confidence 44544444 4888999973
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.2e-37 Score=287.80 Aligned_cols=249 Identities=18% Similarity=0.253 Sum_probs=194.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|...|++++|+|++.+| +++.||+|+|||+.+++.. ........+|.
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------- 139 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------- 139 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS-------
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC-------
Confidence 4688999999999998755 5678999999999887542 11112345788
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|+ |++++|++++.|++|++||+.+++.....
T Consensus 140 -----~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~----------------------------------- 177 (357)
T 4g56_B 140 -----DIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSY----------------------------------- 177 (357)
T ss_dssp -----SCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 889999998 79999999999999999999987754432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|++++|++++. +++++ .|+.|++||+++....... ....+
T Consensus 178 --------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~ 225 (357)
T 4g56_B 178 --------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCAS 225 (357)
T ss_dssp --------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTC
T ss_pred --------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee------eeccc
Confidence 68999999999999875 67777 9999999999854433221 24567
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
...+.+++|+|++..+|++|+.|+.|++||+++++.. +.+. +|...|.+++|+|++ ++|+++
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~-------------~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSA-------------VHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEEC-------------CCSSCEEEEEECSSSSCCEEEE
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEe-------------ccceeEEEEEEcCCCCCEEEEE
Confidence 7889999999987589999999999999999987543 3333 367899999999987 578887
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++|+|||+++ ++.+.. .+|...+ ++++|+| ++++|++++.||+|++|++...
T Consensus 289 s~D~~i~iwd~~~-~~~~~~-~~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 289 SEDCTVAVLDADF-SEVFRD-LSHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEECTTS-CEEEEE-CCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eCCCEEEEEECCC-CcEeEE-CCCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 5 69999999985 665544 4677655 7999998 7999999999999999999764
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.5e-36 Score=278.78 Aligned_cols=284 Identities=13% Similarity=0.177 Sum_probs=231.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++|++++ ||.|++|++.+++.. .........+|.
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~------- 97 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------- 97 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT-------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----------------------eeeecccccCCC-------
Confidence 46899999999999999999998 999999999876532 001111222676
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++....
T Consensus 98 -----~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~------------------------------------ 134 (337)
T 1gxr_A 98 -----NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIK------------------------------------ 134 (337)
T ss_dssp -----SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEE------------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCccee------------------------------------
Confidence 889999998 7899999999999999999987652221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+ ..|...|.+++|+|++++++++ .|+.|++||++ ..+.... +..|.
T Consensus 135 ----------------------~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~~~ 183 (337)
T 1gxr_A 135 ----------------------AEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHT 183 (337)
T ss_dssp ----------------------EEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred ----------------------eec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eeccc
Confidence 111 5788899999999999999999 99999999999 4444443 56788
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.+++|+|++ ++|++++.||.|++||+++++.. ..+. |...+.+++|+|++++|++++
T Consensus 184 ~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 184 DGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCCCEEEEEcC
Confidence 999999999998 99999999999999999987543 2222 356899999999999999886
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++||++. .+ ...+..|...+ .+++|+|++++|++++.||.|++|++.+++.. ....|
T Consensus 245 ~~~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~ 305 (337)
T 1gxr_A 245 SSNVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE 305 (337)
T ss_dssp TSCEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEEC
T ss_pred CCcEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecC
Confidence 59999999975 43 44566666554 79999999999999999999999999988544 44568
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
...+.+++++| ++++ |++++.|+. .+|+
T Consensus 306 ~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 306 SSSVLSCDISV--DDKY-----IVTGSGDKKATVYE 334 (337)
T ss_dssp SSCEEEEEECT--TSCE-----EEEEETTSCEEEEE
T ss_pred CCcEEEEEECC--CCCE-----EEEecCCCeEEEEE
Confidence 88999999998 6777 899999998 8884
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-36 Score=280.26 Aligned_cols=249 Identities=18% Similarity=0.235 Sum_probs=201.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++|++|+.|++|+|||+.+++ ....+.+|.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~---------------------------~~~~~~~h~-------- 107 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---------------------------TYQRFVGHK-------- 107 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---------------------------eeEEEccCC--------
Confidence 589999999999999999999999999999998765 346788999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++.+|++++.|++|++||+......
T Consensus 108 ----~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~~~~~--------------------------------------- 142 (319)
T 3frx_A 108 ----SDVMSVDID--KKASMIISGSRDKTIKVWTIKGQCLA--------------------------------------- 142 (319)
T ss_dssp ----SCEEEEEEC--TTSCEEEEEETTSCEEEEETTSCEEE---------------------------------------
T ss_pred ----CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCeEE---------------------------------------
Confidence 889999997 78999999999999999998643221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC------CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+ .+|...|.+++|+|. +..++++ .|+.|++||++. .+....
T Consensus 143 ----------------------~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~------- 191 (319)
T 3frx_A 143 ----------------------TL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEAD------- 191 (319)
T ss_dssp ----------------------EE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEE-------
T ss_pred ----------------------EE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhee-------
Confidence 11 588899999999885 4478888 999999999984 444332
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+.+|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. ...|.+++|+|++.+|
T Consensus 192 ~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 192 FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEE
T ss_pred ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEE
Confidence 67899999999999999 99999999999999999987543 33332 3579999999999999
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++.++.+++|++.. ...+..+..+...... .+. ..+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~~----~~~---~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDP-QYLVDDLRPEFAGYSK----AAE---PHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETT-EEEEEEECCCCTTCCG----GGC---CCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCc-CeeeeccCcccccccc----CcC---cceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999888899999974 5555554432111000 000 11268999999999999999999999998754
No 48
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=295.33 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=194.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.++|++++|+|+|++||+|+.||.|+|||+.++. ++....+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~--------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD--------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence 46789999999999999999999999999998762 12446788998
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.|++|++||+.+++ ...
T Consensus 56 ---~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------------------------------------- 92 (377)
T 3dwl_C 56 ---KIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQ-------------------------------------- 92 (377)
T ss_dssp ---SCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCC--------------------------------------
T ss_pred ---ceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceee--------------------------------------
Confidence 899999998 789999999999999999998765 111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC-
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD- 265 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~- 265 (501)
...+ .+|...|.+++|+|++++|++| .|+.|++||++.... .... +..
T Consensus 93 --------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~ 144 (377)
T 3dwl_C 93 --------------------TLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-------LKRP 144 (377)
T ss_dssp --------------------EEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-------ECSS
T ss_pred --------------------eeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-------eecc
Confidence 1111 5789999999999999999999 999999999984432 2332 445
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc-ccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|...|.+++|+|++ ++|++++.|+.|++||++................ ........+ +|...|.+++|+|++++|++
T Consensus 145 h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 145 LRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp CCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred cCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 89999999999998 9999999999999999976542211000000000 000011122 68899999999999999998
Q ss_pred Ec-CCcEEEEEeeCCCCc----eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 345 RD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++ |+.|++||+++ ++. +..+.+|...+ .+++|+|++++|++|+.++.+ +|+...
T Consensus 223 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 223 AGHDSSVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EETTTEEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeCCCcEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 86 59999999986 655 67788887765 799999999999999877766 666553
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=282.26 Aligned_cols=268 Identities=17% Similarity=0.233 Sum_probs=203.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.|++|+||++.++. ......+.+|.
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~-------- 105 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------------FECVTTLEGHE-------- 105 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCS--------
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------------eEEEEEccCCC--------
Confidence 589999999999999999999999999999987652 34567889999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.|++|++||+.++...
T Consensus 106 ----~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~--------------------------------------- 140 (345)
T 3fm0_A 106 ----NEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEY--------------------------------------- 140 (345)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCE---------------------------------------
T ss_pred ----CCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCe---------------------------------------
Confidence 889999998 78999999999999999999765421
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 267 (501)
.+...+ .+|...|.+++|+|++++|++| .|+.|++||.+.... +.. .+.+|.
T Consensus 141 ------------------~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~-------~~~~h~ 194 (345)
T 3fm0_A 141 ------------------ECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA-------TLEGHE 194 (345)
T ss_dssp ------------------EEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE-------EECCCS
T ss_pred ------------------EEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE-------EecCCC
Confidence 122222 6899999999999999999999 999999999984332 222 267899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ++|++++.|++|++||.......... ..... .........+.+ |...|.+++|+|++..|++++
T Consensus 195 ~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 195 STVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 999999999999 99999999999999997543221100 00000 000000011222 778999999999999999885
Q ss_pred -CCcEEEEEeeCCCC---ceeE-----eeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 347 -YMNLKLWDIRMDST---PVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 -~~~i~lwd~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|++|+...... +... ..+|...+ ++++|+|++ .+||+|+.||+|++|++.++
T Consensus 272 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 272 GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 69999999874221 1111 23455443 799999997 59999999999999999887
Q ss_pred Ccc
Q 010801 417 SAG 419 (501)
Q Consensus 417 ~~~ 419 (501)
+.+
T Consensus 337 ~~~ 339 (345)
T 3fm0_A 337 EGL 339 (345)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 50
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-37 Score=284.21 Aligned_cols=257 Identities=15% Similarity=0.186 Sum_probs=198.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.|++|+|||+.+++. .....+.+|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~------- 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE------- 57 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence 36999999999999999999999999999999986532 2456789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++++.|++|++||+++++....
T Consensus 58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 96 (316)
T 3bg1_A 58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------ 96 (316)
T ss_dssp -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------------------------------------
T ss_pred -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------------------------------------
Confidence 899999997423588999999999999999987642211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ +.+|++| .|+.|++||++...... . ...+.+
T Consensus 97 ----------------------~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-~----~~~~~~ 148 (316)
T 3bg1_A 97 ----------------------HEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-V----KKINNA 148 (316)
T ss_dssp ----------------------EEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-E----CCBTTS
T ss_pred ----------------------EEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-e----eeeecc
Confidence 112 689999999999998 7899999 99999999998443221 0 013678
Q ss_pred cccceEEEEEecCC----------------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 266 LTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 266 ~~~~v~~v~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
|...|.+++|+|+. .++|++++.|+.|++||++..... +.. ..+.+|...
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~~----------~~l~~h~~~ 214 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KEE----------QKLEAHSDW 214 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EEE----------ECCBCCSSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----cee----------eecccCCCc
Confidence 99999999999972 168999999999999999754210 011 113457889
Q ss_pred eeEEEEeeCC----CEEEEEc-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 330 ISDIKFANDG----QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 330 i~~~~~sp~~----~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
|.+++|+|++ ++|++++ |++|++||++... .....+..|...+ ++++|+|++++|++
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las 279 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAV 279 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEE
Confidence 9999999986 7899885 6999999987411 1223445555543 79999999999999
Q ss_pred EeCCCeEEEEecCC
Q 010801 402 GSYSNLLRIFSHGV 415 (501)
Q Consensus 402 ~~~dg~i~iwd~~~ 415 (501)
++.||.|+||+...
T Consensus 280 ~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 280 SGGDNKVTLWKESV 293 (316)
T ss_dssp EESSSCEEEEEECT
T ss_pred EcCCCeEEEEEECC
Confidence 99999999999863
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-36 Score=282.35 Aligned_cols=289 Identities=12% Similarity=0.127 Sum_probs=238.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------- 74 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------- 74 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC-------
Confidence 3599999999999999999999999999999988765 346788898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++++|++++.|+.|++||+.+++.....
T Consensus 75 -----~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------- 112 (369)
T 3zwl_B 75 -----GTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATW----------------------------------- 112 (369)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-----------------------------------
Confidence 889999998 78999999999999999999987754432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCC--
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKP-- 260 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~-- 260 (501)
.+...+.+++|+|+++.++++ .+ +.|++||+..............
T Consensus 113 ---------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 113 ---------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp ---------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred ---------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 266789999999999999998 88 9999999985432211111100
Q ss_pred -CCCCCccc--ceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 261 -SNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 261 -~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+..|.. .+.+++|+|++ ++|++++.||.|++||+++. ... ..+ ..|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~-------------~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSI-------------DLHEKSISDMQFS 227 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEE-------------ECCSSCEEEEEEC
T ss_pred eeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEE-------------ecCCCceeEEEEC
Confidence 11334444 89999999999 99999999999999999873 222 233 3367899999999
Q ss_pred eCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---------
Q 010801 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--------- 406 (501)
Q Consensus 337 p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--------- 406 (501)
|++++|++++ ++.|++||+++ ++.+..+.. ...+ ..++|+|+++++++++.++
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVST-LQVLKKYET-DCPL---------------NTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-SSCE---------------EEEEECSSSSEEEEEECCC---------
T ss_pred CCCCEEEEecCCceEEEEECCC-CceeeeecC-CCCc---------------eeEEecCCCceEEEeecCCCceEEEEec
Confidence 9999999886 59999999986 777777763 3322 6899999999999999988
Q ss_pred -----eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 407 -----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 407 -----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+++||+.+++ ....+.+|...|.+++++| ++++ |++++.|+. .+|+..
T Consensus 291 ~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISP--QGTS-----YASGGEDGFIRLHHFE 345 (369)
T ss_dssp ----CEEEEEETTTCC-EEEEEECCSSCEEEEEECT--TSSE-----EEEEETTSEEEEEEEC
T ss_pred CCCcceeEEEecCCCc-chhheecccCcEEEEEECC--CCCE-----EEEEcCCCeEEEEECc
Confidence 89999999884 4588899999999999999 7777 999999999 999554
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-35 Score=289.64 Aligned_cols=306 Identities=14% Similarity=0.214 Sum_probs=247.3
Q ss_pred cccccce-EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v-~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.| ++ ++++|++||+|+.||+|++||+.+++. ...+.+|.
T Consensus 115 ~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------------~~~~~~h~------ 159 (445)
T 2ovr_B 115 KGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHT------ 159 (445)
T ss_dssp ECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCS------
T ss_pred cccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE---------------------------EEEEcCCC------
Confidence 3587765 54 555799999999999999999987653 47788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ ++.+++++.||+|++||+.+++.....
T Consensus 160 ------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~---------------------------------- 195 (445)
T 2ovr_B 160 ------GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTL---------------------------------- 195 (445)
T ss_dssp ------SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred ------CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEE----------------------------------
Confidence 899999996 469999999999999999987654432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+ ++.+++| .|+.|++||+.. ++.... +.+|
T Consensus 196 ---------------------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~-------~~~~ 238 (445)
T 2ovr_B 196 ---------------------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHV-------LMGH 238 (445)
T ss_dssp ---------------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEE-------EECC
T ss_pred ---------------------------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEE-------EcCC
Confidence 6888999999995 5678888 999999999994 444443 5678
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|.+++| ++ +++++++.||.|++||+++++.. ..+ .+|...|.++.| +++++++++
T Consensus 239 ~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~~-------------~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 239 VAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HTL-------------QGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp SSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EEE-------------CCCSSCEEEEEE--CSSEEEEEE
T ss_pred cccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EEe-------------cCCCCceEEEEE--CCCEEEEEe
Confidence 999999999 56 78999999999999999887543 233 336778999998 788899885
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++.+..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++. ...+..
T Consensus 297 ~d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~ 357 (445)
T 2ovr_B 297 LDTSIRVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQC-LQTLQG 357 (445)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECS
T ss_pred CCCeEEEEECCC-CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc
Confidence 69999999986 88888888887654 45555 577999999999999999998854 467765
Q ss_pred ---ccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccc-----cccCCCeEEEEEccCCCEEEEeeCC
Q 010801 426 ---GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELS-----YNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 426 ---~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~-----~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
|...+.++.+.+ .+ +++|+.|+. .+|+.. +..... ..+...|.+++|+|++.+||+++.|
T Consensus 358 ~~~~~~~v~~~~~~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 358 PNKHQSAVTCLQFNK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp TTSCSSCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 888899888853 45 899999999 999544 333333 3678899999999999999999977
Q ss_pred e-----EEEEe
Q 010801 495 S-----LFFHY 500 (501)
Q Consensus 495 ~-----~~i~~ 500 (501)
+ ++||+
T Consensus 429 g~~~~~l~v~d 439 (445)
T 2ovr_B 429 GTEETKLLVLD 439 (445)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCccEEEEEE
Confidence 6 78875
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.9e-36 Score=282.33 Aligned_cols=308 Identities=13% Similarity=0.174 Sum_probs=225.9
Q ss_pred ccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCcc
Q 010801 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 103 (501)
.|.+.|++++|+|+ ...+++++.++.|+|||+.+++.. ..+..+. .|.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~~~~~~~~-- 69 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQSYVDADAD-- 69 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEEEECSCTT--
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------EeeeeccccCCC--
Confidence 58999999999984 455666667889999999876542 1111111 244
Q ss_pred hhhccccccccceeEEEEeecCC--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|++++|+|+.. +.+|++++.||.|++||+.+++.....
T Consensus 70 ----------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---------------------------- 111 (366)
T 3k26_A 70 ----------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY---------------------------- 111 (366)
T ss_dssp ----------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE----------------------------
T ss_pred ----------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee----------------------------
Confidence 7899999995422 679999999999999999887644332
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.+|...|.+++|+| ++.+|++| .|+.|++||++. ++....+
T Consensus 112 ---------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--- 154 (366)
T 3k26_A 112 ---------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIF--- 154 (366)
T ss_dssp ---------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEE---
T ss_pred ---------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEe---
Confidence 57899999999999 89999999 999999999994 4444431
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce--eec---------ccccCCCcceeeeccc
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRD---------AAESHGSKSFFTEIIA 328 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~h~~ 328 (501)
..+..|...|.+++|+|++ ++|++++.||.|++||+++++........ +.. ............+|..
T Consensus 155 -~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 155 -GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp -CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred -cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 1236799999999999998 99999999999999999987543110000 000 0000011122344889
Q ss_pred ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC-------------ceeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.|.+++|+ +++|++++ ++.|++||+++... .+..+..|...+ ++++|+|
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~ 295 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSM 295 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEE
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcC
Confidence 99999999 77888885 59999999986222 255555565544 6899999
Q ss_pred C--CcEEEEEeCCCeEEEEecCCCCcce---EEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccc
Q 010801 395 D--GLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 469 (501)
Q Consensus 395 ~--~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~ 469 (501)
+ +++|++|+.||.|++||+.+++... ..+..|
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------------------------------- 332 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH------------------------------------------- 332 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT-------------------------------------------
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc-------------------------------------------
Confidence 9 9999999999999999999874321 011111
Q ss_pred cccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 470 YNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 470 ~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
.+...|++++|+|++++|++++.| .+++|+.
T Consensus 333 -~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 333 -KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 124588999999999999999865 5999973
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=291.75 Aligned_cols=309 Identities=13% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
...+.|...|++++|+|++++||+|+.||.|++|++.+... .......+.+|.
T Consensus 61 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~---- 113 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS---- 113 (416)
T ss_dssp SCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS----
T ss_pred EEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc----
Confidence 34567899999999999999999999999999999986321 122557788898
Q ss_pred hccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|.+++|+ |+ +.+|++++.|+.|++||+.+++..... ..
T Consensus 114 --------~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~---------------------------- 154 (416)
T 2pm9_A 114 --------SSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSN-YT---------------------------- 154 (416)
T ss_dssp --------SCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTT-CC----------------------------
T ss_pred --------cceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCcccccc-cc----------------------------
Confidence 899999998 66 789999999999999999876511000 00
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
...... ...|...|.+++|+|+ +.+|+++ .|+.|++||++. .+....+... ..
T Consensus 155 ----------------------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~ 209 (416)
T 2pm9_A 155 ----------------------PLTPGQ-SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVIHLSYT-SP 209 (416)
T ss_dssp ----------------------CBCCCC-SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEEEEECCC-CC
T ss_pred ----------------------cccccc-ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcceEEecc-cc
Confidence 000000 1578889999999999 7889998 999999999994 4444432111 11
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-C
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D 338 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~ 338 (501)
..+|...|.+++|+|++..+|++++.|+ .|++||++++.... ..+. .+|...|.+++|+| +
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~------------~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLN------------QGHQKGILSLDWCHQD 274 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCC------------SCCSSCEEEEEECSSC
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEee------------cCccCceeEEEeCCCC
Confidence 2234789999999999757999999998 99999998863221 2222 04678999999999 8
Q ss_pred CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 339 ~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++|++++ |+.|++||+++ ++++..+.+|...+ ++++|+|++ .+|++++.||.|++|++.+.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 99999886 59999999986 88889999888765 789999998 89999999999999999876
Q ss_pred CcceEE----------------------------------EecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 417 SAGGIT----------------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 417 ~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
...... ...|..++..++|+| +|++ |++++.|+. .+|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITPDGKGVSITN 411 (416)
T ss_dssp CCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCTTSSCBCCBC
T ss_pred CCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeCCCCeEEEEE
Confidence 433111 011667788999998 8888 999999999 9995
Q ss_pred cc
Q 010801 462 SS 463 (501)
Q Consensus 462 ~~ 463 (501)
..
T Consensus 412 ~~ 413 (416)
T 2pm9_A 412 PK 413 (416)
T ss_dssp CC
T ss_pred ec
Confidence 44
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-35 Score=288.92 Aligned_cols=316 Identities=12% Similarity=0.211 Sum_probs=242.2
Q ss_pred cccccce-EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v-~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.| +++.| ++++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 162 (464)
T 3v7d_B 118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------ 162 (464)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence 3577774 66666 57899999999999999988664 447788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ +++ .+++|+.||+|++||+.+++.....
T Consensus 163 ------~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~---------------------------------- 199 (464)
T 3v7d_B 163 ------GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVF---------------------------------- 199 (464)
T ss_dssp ------SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred ------cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEE----------------------------------
Confidence 999999997 555 9999999999999999987644432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec--CCCCEEEEE-cCCeEEEEECCCCCeeeeeeec------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDM------ 258 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------ 258 (501)
.+|...|.+++|+ +++.++++| .|+.|++||++...........
T Consensus 200 ---------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 200 ---------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ---------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ---------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 6889999999998 577899999 9999999999854322110000
Q ss_pred --C-------CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 259 --K-------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 259 --~-------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
. ...+.+|...+.++ ++++ +++++++.||.|++||+++++.. ..+ .+|...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~-------------~~~~~~ 312 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YIL-------------SGHTDR 312 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSSC
T ss_pred eeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEe-------------cCCCCC
Confidence 0 00256788888877 5677 89999999999999999887543 233 346789
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
|.+++|+|++++|++++ |+.|++||+++ ++++..+.+|...+ .+++|+ +++|++++.||.|
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v 374 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSI 374 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcE
Confidence 99999999999999986 59999999986 88899999888765 688886 5799999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc-ccccCCCeEEEEEccC
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL-SYNLSSKLLHLAWHPT 484 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~-~~~~~~~i~~~~~sp~ 484 (501)
++||+.++... ....+...+..+++++ ++.+ +++|+ ++. .+|+.. +.+.. ...+...|.+++|+ .
T Consensus 375 ~vwd~~~~~~~--~~~~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 375 RGWDANDYSRK--FSYHHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp EEEETTTCCEE--EEEECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred EEEECCCCcee--eeecCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 99999987433 2224666777788888 6666 88888 778 999543 33332 56788999999997 3
Q ss_pred CCEEEEeeCCeEEE
Q 010801 485 TNLIACANGNSLFF 498 (501)
Q Consensus 485 ~~~la~~~~~~~~i 498 (501)
...++++++++..+
T Consensus 444 ~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 444 KTLVAAVEKDGQSF 457 (464)
T ss_dssp TEEEEEEEETTEEE
T ss_pred CEEEEEEEeCCeEE
Confidence 34444555565443
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-36 Score=285.95 Aligned_cols=258 Identities=16% Similarity=0.259 Sum_probs=203.3
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~---------- 165 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE---------- 165 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence 3459999999999999999999999999998664 346788999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.+++|+ |++.+|++++.|++|++||+.+++.....
T Consensus 166 --~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------------------------------------- 203 (393)
T 1erj_A 166 --QDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTL-------------------------------------- 203 (393)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred --CCEEEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEE--------------------------------------
Confidence 889999998 78999999999999999999987644322
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+...+.+++|+| ++++|++| .|+.|++||+++ +.....+........+|...
T Consensus 204 ------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 ------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp ------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSC
T ss_pred ------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCC
Confidence 3456789999999 89999999 999999999984 44444332222233679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|.+++|+|++ ++|++++.||.|++||+++...... ... .........+.+|...|.+++|+|++++|++|+ |+
T Consensus 259 v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 259 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999 9999999999999999987543210 000 001111223567889999999999999999986 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC------CCcEEEEEeCCCeEEEEecCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.|++||+++ ++++..+.+|...+ .+++|++ ++++|++|+.||+|+||++..
T Consensus 333 ~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 333 GVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999986 88889999998865 6888876 689999999999999999864
No 57
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.4e-36 Score=280.16 Aligned_cols=255 Identities=15% Similarity=0.183 Sum_probs=197.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|++++|+|++.+|++|+.|++|++||+.+++. ...+.+|.
T Consensus 73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~------- 118 (343)
T 2xzm_R 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQ------- 118 (343)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------------EEEEECCC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCC-------
Confidence 36899999999999999999999999999999987653 46788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|++|++||+.........
T Consensus 119 -----~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------------- 156 (343)
T 2xzm_R 119 -----SEVYSVAFS--PDNRQILSAGAEREIKLWNILGECKFSSA----------------------------------- 156 (343)
T ss_dssp -----SCEEEEEEC--SSTTEEEEEETTSCEEEEESSSCEEEECC-----------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEcCCCEEEEEeccCCceeeee-----------------------------------
Confidence 889999998 78999999999999999998743211110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC----------CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
...+|...|.+++|+|++ .+|+++ .|+.|++||.. .+....
T Consensus 157 ------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~-- 208 (343)
T 2xzm_R 157 ------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYT-- 208 (343)
T ss_dssp ------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEE--
T ss_pred ------------------------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEE--
Confidence 004788899999999987 688998 99999999954 333332
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+.+|...|.+++|+|++ ++|++++.||.|++||++...... ..+. +...|.+++|+|
T Consensus 209 -----~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~---~~~~--------------~~~~v~~v~~sp 265 (343)
T 2xzm_R 209 -----FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ---REFD--------------AGSTINQIAFNP 265 (343)
T ss_dssp -----EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS---EEEE--------------CSSCEEEEEECS
T ss_pred -----EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc---eeec--------------CCCcEEEEEECC
Confidence 56899999999999999 999999999999999995443211 2221 235699999999
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCCcee--Eeecccccccccccc-CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++++++.++.|++||+.+ .+... .+..+.. ...... .+.. .+++++|+|+|++|++|+.||.|++|+++
T Consensus 266 ~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 266 KLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 99999988889999999975 44333 3331110 000000 0011 13799999999999999999999999987
Q ss_pred CC
Q 010801 415 VG 416 (501)
Q Consensus 415 ~~ 416 (501)
++
T Consensus 340 ~g 341 (343)
T 2xzm_R 340 TS 341 (343)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=287.50 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=234.7
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.. ...+....+ +|.
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------- 111 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------- 111 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS-------
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC-------
Confidence 4789999999999 9999999999999999998862210 001111222 477
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecc---ccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|.+++|+ +++.+|++++.||+|++||+. .++......
T Consensus 112 -----~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------------------- 153 (437)
T 3gre_A 112 -----STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN------------------------------- 153 (437)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-------------------------------
T ss_pred -----CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccc-------------------------------
Confidence 889999998 789999999999999999995 444333221
Q ss_pred ccceeccCcceEEEeccCceeeeeeEee-cCC--cccceEEEE--ecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~--~~~~v~~l~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+++.+ +.. +...+.++. +++++.+|++| .|+.|++||++. .+.+..
T Consensus 154 ---------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~---- 207 (437)
T 3gre_A 154 ---------------------CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-LERLQI---- 207 (437)
T ss_dssp ---------------------EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-CCEEEE----
T ss_pred ---------------------cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeeEE----
Confidence 0111111 012 667788888 57899999999 999999999994 444443
Q ss_pred CCCCCC--cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe-
Q 010801 260 PSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA- 336 (501)
Q Consensus 260 ~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s- 336 (501)
+.. |...|++++|+|++ ++|++++.||.|++||+++++.. ..+.. +|...|.+++|+
T Consensus 208 ---~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~ 267 (437)
T 3gre_A 208 ---IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQ 267 (437)
T ss_dssp ---EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECT
T ss_pred ---EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEecc
Confidence 334 88999999999998 99999999999999999986543 33321 245689999665
Q ss_pred ---eCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccccccc-----------CCCCCcceeeEEEEcCCCcEEEE
Q 010801 337 ---NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-----------YNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 337 ---p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
|++++|++++ |+.|++||+++ ++.+..+.+|...+....-. ........+++++|+ ++++|++
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 4678999886 59999999986 88888888776543311100 000012234789999 8899999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccc---eeeccCCccccCccceeeeecccceeec-cccCCcccccccCCCeE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRK---PILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLL 477 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~l~~~~~~~~~iw-~~~~~~~~~~~~~~~i~ 477 (501)
|+.||.|++||+.+++.. ..+.+|...... ..+.+ ...+ ++.. +. ...........|...|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~------~~~~~~~~~~~~~~h~~~I~ 411 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTA--NLTM-----LLRK------MKRTSTHSVDDSLYHHDIIN 411 (437)
T ss_dssp EGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEET--TEEE-----EEEE------CC-------------CCCEE
T ss_pred cCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeec--ceEE-----EEEe------cccccccccCccccccccee
Confidence 999999999999988544 677776543222 22222 1111 1111 00 01112233346889999
Q ss_pred EEEEccC--CCEEEEeeCCe-EEEEe
Q 010801 478 HLAWHPT--TNLIACANGNS-LFFHY 500 (501)
Q Consensus 478 ~~~~sp~--~~~la~~~~~~-~~i~~ 500 (501)
+++|+++ +.+|++|+.|+ ++||+
T Consensus 412 ~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 412 SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999999 77999999665 99985
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.7e-35 Score=272.71 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=227.8
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
...+..+|+||. +.|++|+|+ |+ +++|++|+.|++|+|||+.+.+...
T Consensus 27 ~~~l~~tL~GH~------------~~V~~v~~s--p~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------- 75 (340)
T 4aow_A 27 QMTLRGTLKGHN------------GWVTQIATT--PQFPDMILSASRDKTIIMWKLTRDETNY----------------- 75 (340)
T ss_dssp EEEEEEEECCCS------------SCEEEEEEC--TTCTTEEEEEETTSCEEEEEECCSSSCS-----------------
T ss_pred ceEEEEEECCcc------------CCEEEEEEe--CCCCCEEEEEcCCCeEEEEECCCCCccc-----------------
Confidence 345667899999 999999998 55 6799999999999999998754211
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
..+.+.+ .+|...|.+++|+|++++|+++ .|+.|++|+..
T Consensus 76 --------------------------------------~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 76 --------------------------------------GIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp --------------------------------------EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred --------------------------------------ceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 1233333 7899999999999999999999 99999999998
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
... .... ...+...+..+.+++++ ++|++++.|+.+++||+...... ... ..+|.
T Consensus 117 ~~~-~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~-----------~~~~~ 171 (340)
T 4aow_A 117 TGT-TTRR-------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQ-----------DESHS 171 (340)
T ss_dssp TTE-EEEE-------EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC-----------SSSCS
T ss_pred ccc-eeee-------ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEE-----------ecccc
Confidence 443 3332 34566778899999998 99999999999999998765321 111 13467
Q ss_pred cceeEEEEeeCC--CEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 328 ASISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 328 ~~i~~~~~sp~~--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
..+..++|++++ .++++++ |+.|++||+++ .+.+..+.+|...+ ++++|+|++++|++|+.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYL---------------NTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEET
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcE---------------EEEEECCCCCEEEEEeC
Confidence 889999999875 4566664 69999999986 88888888888765 79999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc-----------cccccc
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-----------ELSYNL 472 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~-----------~~~~~~ 472 (501)
||.|++||+.+.+.+ ..+.. ...+..+.++| ++. +++++.++. .+|+..... .....|
T Consensus 236 Dg~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~--~~~------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 236 DGQAMLWDLNEGKHL-YTLDG-GDIINALCFSP--NRY------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp TCEEEEEETTTTEEE-EEEEC-SSCEEEEEECS--SSS------EEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CCeEEEEEeccCcee-eeecC-CceEEeeecCC--CCc------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 999999999987443 45544 46788899987 333 567777888 999554221 122367
Q ss_pred CCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
...|++++|+|++++||+|+.|+ ++||++
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 88999999999999999999655 999973
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=281.31 Aligned_cols=258 Identities=16% Similarity=0.226 Sum_probs=205.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||.|+||++..+ ..+....+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~------- 55 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------- 55 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCC-------
Confidence 469999999999999999999999999999999844 234567788998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++.+|++++.||.|++||+.+++....
T Consensus 56 -----~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------ 94 (379)
T 3jrp_A 56 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------ 94 (379)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred -----CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe------------------------------------
Confidence 899999998433489999999999999999988753221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ ..|...|.+++|+|+ +.+|+++ .|+.|++||++........ .+..
T Consensus 95 ----------------------~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~ 145 (379)
T 3jrp_A 95 ----------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA 145 (379)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEEC
T ss_pred ----------------------eee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecC
Confidence 111 578899999999999 9999999 9999999999854332221 2567
Q ss_pred cccceEEEEEec-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 266 ~~~~v~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
|...|.+++|+| ++ .+|++++.||.|++||++++......... +.+|...|.+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~h~~~v~~ 211 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRD 211 (379)
T ss_dssp CTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE-------------EecccCcEeE
Confidence 889999999999 57 99999999999999999876432111112 3457889999
Q ss_pred EEEeeC---CCEEEEEc-CCcEEEEEeeCCCCce--eEee--ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 333 IKFAND---GQHLLSRD-YMNLKLWDIRMDSTPV--ATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 333 ~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++|+|+ +++|++++ |+.|++||++...... ..+. .+...+ ++++|+|++++|++++.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEES
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE---------------EEEEEcCCCCEEEEecC
Confidence 999999 89999886 6999999998632211 1111 133322 79999999999999999
Q ss_pred CCeEEEEecCCCC
Q 010801 405 SNLLRIFSHGVGS 417 (501)
Q Consensus 405 dg~i~iwd~~~~~ 417 (501)
||.|++|++..+.
T Consensus 277 dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 277 DNKVTLWKENLEG 289 (379)
T ss_dssp SSSEEEEEEEETT
T ss_pred CCcEEEEeCCCCC
Confidence 9999999998653
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=279.87 Aligned_cols=288 Identities=13% Similarity=0.142 Sum_probs=224.2
Q ss_pred ccccceEEEEEccCCCEE-EEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.|.+.|++++|+|++..+ ++|+. ||.|+|||+.+++.. .....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~---- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA---- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence 489999999999999655 56665 999999999977531 12223677
Q ss_pred hccccccccceeEEEEeecCC---CCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~---~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|.+++|+ |+ +.+|++++.|+.|++||+.+++ ....
T Consensus 66 --------~~v~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------- 106 (357)
T 3i2n_A 66 --------KPIKCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS----------------------------- 106 (357)
T ss_dssp --------SCEEEEECT--TCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred --------CcEEEEEEc--CCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence 889999998 55 6999999999999999998765 2221
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEE------ecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
+ .+|...|.+++ |+|++++|+++ .|+.|++||++.......
T Consensus 107 -------------------------------~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 107 -------------------------------V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp -------------------------------E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred -------------------------------E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 1 68889999995 57899999999 999999999995543444
Q ss_pred eeecCCCCCCCcccceEEEE----EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 255 IVDMKPSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
.+... ...+...+.+++ |+|++ ++|++++.||.|++||+++++.. .. ..|...|
T Consensus 155 ~~~~~---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~--------------~~~~~~v 212 (357)
T 3i2n_A 155 NMEPV---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----WE--------------TNIKNGV 212 (357)
T ss_dssp EECCC---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----EE--------------EECSSCE
T ss_pred ecccc---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----ee--------------cCCCCce
Confidence 32110 111234788888 67888 99999999999999999987532 11 2356789
Q ss_pred eEEEEee---CCCEEEEEc-CCcEEEEEeeCCCCceeEee-----ccccccccccccCCCCCcceeeEEEEcCCCc-EEE
Q 010801 331 SDIKFAN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFA 400 (501)
Q Consensus 331 ~~~~~sp---~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~ 400 (501)
.+++|+| ++++|++++ ++.|++||+++ ++....+. +|...+ ++++|+|+++ +|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFL 276 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEE
Confidence 9999999 899999886 59999999986 55554444 666554 7999999998 899
Q ss_pred EEeCCCeEEEEecCCCCc------------------ceEEEecccCcccceeeccCCccccCccceee-eecccce-eec
Q 010801 401 TGSYSNLLRIFSHGVGSA------------------GGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQA-HEN 460 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~iw 460 (501)
+++.||.|++||+..+.. ....+.+|..+|.+++|+| ++++ |+ +++.|+. ++|
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP--DKRG-----LCVCSSFDQTVRVL 349 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS--SSTT-----EEEEEETTSEEEEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC--CCCe-----EEEEecCCCcEEEE
Confidence 999999999999986532 3567889999999999999 6776 77 8999999 999
Q ss_pred ccc
Q 010801 461 SSS 463 (501)
Q Consensus 461 ~~~ 463 (501)
+..
T Consensus 350 ~~~ 352 (357)
T 3i2n_A 350 IVT 352 (357)
T ss_dssp EEC
T ss_pred ECC
Confidence 554
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-36 Score=283.00 Aligned_cols=305 Identities=10% Similarity=0.066 Sum_probs=218.5
Q ss_pred ccceEEEEEccCCCEEEEEecCC-------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGG-------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.-+|++++|+|||++||+|+.|. .|++|++..+... ....+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~--- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND--- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS---
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC---
Confidence 45899999999999999987543 5999999866431 00000 111223567777
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEe-----------eCCCeEEEEecccccee--eeeccCCCccccccccccccc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~-----------s~d~~i~lw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (501)
..|.++++. +..++++ +.|+.+++|++...... ........ .......
T Consensus 74 ---------~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 134 (365)
T 4h5i_A 74 ---------DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD------ASTNADD 134 (365)
T ss_dssp ---------CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS------CCCCTTC
T ss_pred ---------CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee------ecCCccc
Confidence 788888874 3455554 45788999988654321 11111000 0011112
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCe
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~ 251 (501)
.+..+.+++++.+++.+.-..++.|++||+... +++..+ .|...|.+++|+|+|++++++.++.+.+|+...+..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 234456778888877665555889999999874 344444 477889999999999999999555677777664554
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC----eEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
.... ....|...|.+++|+|++ +++++++.|+ .+++||+..........+ .+.+|.
T Consensus 210 ~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~~~ 269 (365)
T 4h5i_A 210 IARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-------------QVTNRF 269 (365)
T ss_dssp EEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-------------EEESSC
T ss_pred eeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeee-------------eecCCC
Confidence 4332 256788899999999999 9999999887 688899876543211111 234577
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe-eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
..|++++|+|||++||+|+ |++|+|||+++ ++++..+ .+|...+ ++++|+|||++||+||.|
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAA 333 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETT
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCC
Confidence 8999999999999999986 59999999986 7888775 6888876 899999999999999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
++|+||++...
T Consensus 334 ~tvrvw~ip~~ 344 (365)
T 4h5i_A 334 NTIHIIKLPLN 344 (365)
T ss_dssp SEEEEEECCTT
T ss_pred CeEEEEEcCCC
Confidence 99999999754
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=272.51 Aligned_cols=295 Identities=14% Similarity=0.148 Sum_probs=237.1
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
......+.+|. +.|++++|+ |++++|++++.||.|++||+.+++.....
T Consensus 22 ~~~~~~l~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------- 70 (369)
T 3zwl_B 22 HMKAIKLTGHE------------RPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGTL----------------- 70 (369)
T ss_dssp SEEEEEEECCS------------SCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEEE-----------------
T ss_pred ccccEEEEEee------------ceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhhh-----------------
Confidence 33446688999 999999998 78999999999999999999887654432
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+|...|.+++|+|++++|+++ .|+.|++||+.+
T Consensus 71 --------------------------------------------~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 105 (369)
T 3zwl_B 71 --------------------------------------------DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN- 105 (369)
T ss_dssp --------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-
T ss_pred --------------------------------------------hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-
Confidence 6889999999999999999999 999999999994
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
++.... +. +...+.+++|+|++ ++|++++.+ |.|++||+....... .+.. ........+.
T Consensus 106 ~~~~~~-------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----~~~~--~~~~~~~~~~ 170 (369)
T 3zwl_B 106 GQCVAT-------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH----ELTK--VSEEPIHKII 170 (369)
T ss_dssp CCEEEE-------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----CEEE--ECSSCSEEEE
T ss_pred CcEEEE-------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----eecc--cccceeeecc
Confidence 444443 22 67789999999999 999999998 999999998765431 1111 1111222334
Q ss_pred eccc--ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 325 EIIA--SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 325 ~h~~--~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.|.. .+.+++|+|++++|++++ ++.|++||+++..+.+..+..|...+ .+++|+|++++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---------------SDMQFSPDLTYFIT 235 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---------------EEEEECTTSSEEEE
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---------------eEEEECCCCCEEEE
Confidence 4555 899999999999999886 59999999986467788888887765 79999999999999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc--------------e-eeccc--cC
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--------------A-HENSS--SG 464 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~-~iw~~--~~ 464 (501)
++.||.|++||+.+++.. ..+. +...+..++++| ++++ +++++.++ . .+|+. .+
T Consensus 236 ~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 236 SSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITP--LKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECS--SSSE-----EEEEECCC-------------CEEEEEETTTCC
T ss_pred ecCCceEEEEECCCCcee-eeec-CCCCceeEEecC--CCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999987443 4454 778899999998 6666 88888777 5 67733 33
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
.......|...|++++|+|++++|++++.| .+++|+
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 444566789999999999999999999855 599996
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-35 Score=282.50 Aligned_cols=302 Identities=9% Similarity=0.074 Sum_probs=232.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+| ++||+|+.||.|+||++.+++.. ........+.+|.
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~-------- 62 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK-------- 62 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT--------
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC--------
Confidence 6899999999998 79999999999999999977521 1223456777898
Q ss_pred cccccceeEEEEeecCC----C---CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 110 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~----~---~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ ++ + .+|++++.|+.|++|++.+++....
T Consensus 63 ----~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------ 106 (397)
T 1sq9_A 63 ----SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------------------------ 106 (397)
T ss_dssp ----TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC------------------------------
T ss_pred ----CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccccc------------------------------
Confidence 889999998 56 8 8999999999999999987663000
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCc-----ccceEEEEec----CCCCE-EEEE-cCCeEEEEECCCC--
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEIS-- 249 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~-l~~~-~d~~i~iwd~~~~-- 249 (501)
.....+ ..| ...|.+++|+ |+++. |+++ .|+.|++||+...
T Consensus 107 -------------------------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 107 -------------------------VIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp -------------------------EEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred -------------------------ccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 001111 455 5899999999 99999 9998 9999999999840
Q ss_pred ---Ceeee-----eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc
Q 010801 250 ---DQCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 250 ---~~~~~-----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
...+. .+.........|...|.+++|+|++ +|++++.||.|++||+++++.. ..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES--------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC---------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec---------
Confidence 22222 1100000014578899999999996 8999999999999999886533 22222
Q ss_pred eeeec---ccceeEEEEeeCCCEEEEEc-C---CcEEEEEeeCCCCceeEeec-------------cccccccccccCCC
Q 010801 322 FFTEI---IASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNN 381 (501)
Q Consensus 322 ~~~~h---~~~i~~~~~sp~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 381 (501)
..+| ...|.+++|+|++++|++++ + +.|++||+++ ++.+..+.+ |...+
T Consensus 226 -~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v--------- 294 (397)
T 1sq9_A 226 -QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV--------- 294 (397)
T ss_dssp -CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE---------
T ss_pred -cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE---------
Confidence 0125 67899999999999999874 6 8999999986 788888887 65544
Q ss_pred CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe------cc---------------cCcccceeeccCC-
Q 010801 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG---------------KNENRKPILQAAP- 439 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~- 439 (501)
.+++|+|++++|++++.||.|++||+.++ .....+. +| ...|..++++|..
T Consensus 295 ------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 295 ------MSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp ------EEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred ------EEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 79999999999999999999999999988 4457788 77 9999999999842
Q ss_pred -------ccccCccceeeeecccce-eeccc
Q 010801 440 -------RARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 440 -------~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
++.+ |++++.|+. .+|+.
T Consensus 368 ~~~~~~~~~~~-----l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 368 RSGMGADLNES-----LCCVCLDRSIRWFRE 393 (397)
T ss_dssp SBSTTCTTSCE-----EEEEETTTEEEEEEE
T ss_pred cccccccccce-----EEEecCCCcEEEEEc
Confidence 1156 899999999 99954
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=265.58 Aligned_cols=275 Identities=14% Similarity=0.101 Sum_probs=215.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++| |++++||+|+.||.|++||+.+++ ....+..|.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~-------- 59 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ-------- 59 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS--------
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC--------
Confidence 68999999999 999999999999999999997654 336677888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++.+|++++.|+.|++|++......
T Consensus 60 ----~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------------------------- 94 (313)
T 3odt_A 60 ----GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSGE--------------------------------------- 94 (313)
T ss_dssp ----SCEEEEEEE--TTTTEEEEEETTSCEEEEETTCCTTS---------------------------------------
T ss_pred ----ccEEEEEEC--CCCCEEEEecCCCeEEEEEeeecCCC---------------------------------------
Confidence 889999998 78999999999999999998764311
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
++...+ .+|...|.+++| +++.++++ .|+.|++||. ...... +..|..
T Consensus 95 ------------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~ 143 (313)
T 3odt_A 95 ------------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNA 143 (313)
T ss_dssp ------------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSS
T ss_pred ------------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCC
Confidence 111112 688999999999 57789998 9999999992 233332 567889
Q ss_pred ceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 269 ~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
.+.+++|.| ++ +++++++.||.|++||.... . ..+.. .|...+.+++|+|++. ++++ .
T Consensus 144 ~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 144 SVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp CEEEEEEEETTT-TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEET
T ss_pred ceeEEEEccCCC-CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccC
Confidence 999999998 66 99999999999999994322 1 22221 1467899999999999 5555 5
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++||+++ ++++..+.+|...+ ++++|+|++ .|++++.||.|++||+.+++ ....+..|
T Consensus 204 dg~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~ 265 (313)
T 3odt_A 204 DGLIKLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGS-LKQVITLP 265 (313)
T ss_dssp TSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCC-EEEEEECS
T ss_pred CCeEEEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCc-eeEEEecc
Confidence 69999999986 88888998888765 799999999 58899999999999999884 34666666
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
...+.+++++| +++ +++++.|+. .+|+.
T Consensus 266 ~~~i~~~~~~~--~~~------~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 266 AISIWSVDCMS--NGD------IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECT--TSC------EEEEETTSCEEEEES
T ss_pred CceEEEEEEcc--CCC------EEEEeCCCcEEEEeC
Confidence 66666666665 332 234555655 66633
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=276.59 Aligned_cols=345 Identities=16% Similarity=0.214 Sum_probs=229.2
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE-----eeeccCCcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~ 103 (501)
.|.+.|++++|+| ++++||+|+.||.|+|||+.+++.... ...... ....+|.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-- 99 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-------------------YTCKAVCSIGRDHPDVHR-- 99 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-------------------EEECEEEEECTTCTTCCS--
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-------------------EeccccccccccccccCC--
Confidence 4999999999999 999999999999999999998765300 000000 0113576
Q ss_pred hhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ | ++.+|++++.|+.|++||+.+++.....
T Consensus 100 ----------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------- 138 (408)
T 4a11_B 100 ----------YSVETVQWY--PHDTGMFTSSSFDKTLKVWDTNTLQTADVF----------------------------- 138 (408)
T ss_dssp ----------SCEEEEEEC--TTCTTCEEEEETTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred ----------CcEEEEEEc--cCCCcEEEEEeCCCeEEEeeCCCCccceec-----------------------------
Confidence 889999998 5 6789999999999999999987654432
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeec
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
.+...+.++.+++. +.+++++ .|+.|++||++.. .....
T Consensus 139 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~--- 181 (408)
T 4a11_B 139 ---------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHI--- 181 (408)
T ss_dssp ---------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEE---
T ss_pred ---------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeee---
Confidence 34567888888874 4589998 9999999999844 44433
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc--ccCCCcceeeecccceeEEEEe
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~s 336 (501)
+..|...|.+++|+|++..+|++++.||.|++||++++.... ..+..+. ..........+|...|.+++|+
T Consensus 182 ----~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 ----LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp ----ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred ----ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEc
Confidence 567999999999999983379999999999999998875332 2222211 1112223346788999999999
Q ss_pred eCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 337 p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|++++|++++ |+.|++||+.+ ++....+..+...... ... ........+..+++++.|+.|++||+.+
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred CCCCEEEEecCCCeEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcC
Confidence 9999999885 59999999986 5544444332211100 000 1122223455677778899999999998
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCC--CEEEEee
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTT--NLIACAN 492 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~--~~la~~~ 492 (501)
++ ....+.+|...|.+++++| ++.+ |++++.|+. .+|+........ .....-....+.|.. .+...+.
T Consensus 324 ~~-~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 324 GE-QITMLKGHYKTVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPVP-DDDETTTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp CC-EEEEECCCSSCEEEEEEET--TTTE-----EEEEETTSCEEEEEECC------------------------------
T ss_pred Cc-ceeeeccCCCeEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCccC-CCCceEeccccccccceeecccCc
Confidence 84 4588999999999999998 6777 999999999 999555322111 111111123344433 2333344
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
++.+.+|+
T Consensus 395 ~~~~~~W~ 402 (408)
T 4a11_B 395 EGGTSAWS 402 (408)
T ss_dssp --------
T ss_pred cCceeecC
Confidence 66788886
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=282.40 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=232.2
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.+.|++++|+|++++||+|+.||.|++|| .+++ ....+.+|.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~--------- 149 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR--------- 149 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence 678999999999999999999999999999 3322 446778898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++............
T Consensus 150 ---~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------ 194 (425)
T 1r5m_A 150 ---APIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGG------------------------------ 194 (425)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------------------------
T ss_pred ---ccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc------------------------------
Confidence 889999998 789999999999999999999887655442211000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..+ .... .......+.+++|+|++ .++++ .++.|++||+... ..... +..|...
T Consensus 195 ---~~~------------~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~-~~~~~-------~~~~~~~ 249 (425)
T 1r5m_A 195 ---SSI------------NAEN-HSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK-TPTGK-------LIGHHGP 249 (425)
T ss_dssp ---------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS-SCSEE-------ECCCSSC
T ss_pred ---cce------------eecc-ccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC-ceeee-------eccCCCc
Confidence 000 0000 02333448889999986 46666 9999999999944 43332 5678899
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|.+++|+|++ ++|++++.||.|++||+++++.. ..+. +|...|.+++|+|++ ++++++ ++
T Consensus 250 i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 250 ISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFY-------------GHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp EEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EEEC-------------CCSSCEEEEEEETTT-EEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eEec-------------CCCccEEEEEECCCC-EEEEEeCCC
Confidence 9999999999 99999999999999999886543 3333 356889999999999 777765 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC-----------
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS----------- 417 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----------- 417 (501)
.|++||+++ ++.+..+..|...+ .+++|+|++++|++++.||.|++||+.++.
T Consensus 311 ~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 311 SVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp EEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC----------
T ss_pred cEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 999999986 78888888777655 789999999999999999999999998764
Q ss_pred --------cceEEEecccC--cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 418 --------AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 418 --------~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.....+..|.. .+..++|+| ++++ |++++.++. .+|+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEECC
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccC--CCce-----EEEEecCceEEEEeec
Confidence 14578888977 999999998 6777 999999999 999543
No 68
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=282.53 Aligned_cols=320 Identities=8% Similarity=-0.002 Sum_probs=215.1
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.+|+|||||+++|+++.|++|+ |...++. +.+|.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~------------------------------l~gh~---------- 52 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD------------------------------INCNS---------- 52 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC------------------------------CSSBG----------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccce------------------------------ecCCC----------
Confidence 58899999999999999999999999 7554432 23444
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.+++|+ |+| .++.+.+|+.+... .... .+...+....+++++..++.+..
T Consensus 53 --~~v~~V~Fs--Pdg-------~~~~~~~~~~~~~~---~~~~------------~~~~~V~~vawSPdG~~LAs~s~- 105 (588)
T 2j04_A 53 --KNLFHVKEF--PLE-------FENKLDFELAQQNG---LLNS------------QPVCYPRVCKPSPIDDWMAVLSN- 105 (588)
T ss_dssp --GGTEEEEEE--CCC-------CCCTTTTSCCCSSC---SSTT------------SCSCCEEEEEECSSSSCEEEEET-
T ss_pred --ccEEEEEEC--CCC-------CcceEEEEeCCCce---Eeec------------CCCCcEEEEEECCCCCEEEEEeC-
Confidence 445555554 333 23333332221111 1000 01223444444444444444432
Q ss_pred cCcceEEEeccCceeeeeeEeecCCccc-----ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe------eeeeeecC
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQ------CFNIVDMK 259 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~------~~~~~~~~ 259 (501)
+|.+++|+.+. ++..+ . |.. .|.+++|+|||++|++| .||+|++||+..+.. .+..+.
T Consensus 106 -dg~V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~-- 175 (588)
T 2j04_A 106 -NGNVSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR-- 175 (588)
T ss_dssp -TSCEEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--
T ss_pred -CCcEEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee--
Confidence 44455554321 22332 4 444 59999999999999999 999999999994321 123221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
....+|...|.+++|+|+| +++++.|+.|++||+.++.... ..+.+. .+|...|.+++|+ |
T Consensus 176 -~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~-~~~tL~------------~~h~~~V~svaFs--g 236 (588)
T 2j04_A 176 -LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP-VSRMIQ------------NASRRKITDLKIV--D 236 (588)
T ss_dssp -CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC-CEEEEE------------CCCSSCCCCEEEE--T
T ss_pred -cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc-ceeeec------------ccccCcEEEEEEE--C
Confidence 1236788999999999986 8889999999999998765210 001221 1356789999999 6
Q ss_pred CEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE--cCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 340 QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 340 ~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+.||++++++|++||+.. ++......+|...+ ..++| +||+..|++++.||+ ++|..+
T Consensus 237 ~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~d--- 296 (588)
T 2j04_A 237 YKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLED--- 296 (588)
T ss_dssp TEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEESS---
T ss_pred CEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEeec---
Confidence 899988889999999974 44423333777765 68999 999999999999999 999987
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+.++| ++.+ +++ .++. ++|+.........+....|.+++|||||+.||+++
T Consensus 297 --------------~~~~sp--d~~l-----~a~--~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTA--DNII-----APY--LEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEEC--CCSS-----HHH--HHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECC--CceE-----EEE--cCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 144666 5554 454 3778 99966433332344466799999999999999987
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.3e-34 Score=301.94 Aligned_cols=365 Identities=14% Similarity=0.141 Sum_probs=271.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------------------~~~~~~~~-------- 97 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK---------------------------VVDFEAHP-------- 97 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCC--------
Confidence 4889999999999999999999999999999987653 36678898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCC-CCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 187 (501)
+.|.+++|+ |++.+|++++.||.|++|++.++ ........ +...+....+.+ +...++.
T Consensus 98 ----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 98 ----DYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------------HEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp ----SCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-------------CSSCEEEEEEETTEEEEEEE
T ss_pred ----CCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-------------CCCcEEEEEEEcCCCCEEEE
Confidence 889999998 78999999999999999999886 33333221 123344555555 4555555
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
+.. ++.+++|++.... ....+...+...+.+++|+| ++.+++++ .|+.|++||+. .+..... +.
T Consensus 159 ~~~--dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~ 225 (814)
T 3mkq_A 159 GCL--DRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LE 225 (814)
T ss_dssp EET--TSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EE
T ss_pred EeC--CCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------Ec
Confidence 543 7899999987633 33333245668999999999 99999999 99999999998 4444443 56
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC--EE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HL 342 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l 342 (501)
+|...|.+++|+|++ .+|++++.||.|++||+.+++.. ..+.. |...+.+++|+|++. ++
T Consensus 226 ~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~ 287 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYI 287 (814)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEE
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEE
Confidence 788999999999999 99999999999999999887543 23322 457899999999987 57
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeecccccccc-----------------ccccCC-----------CCCcceeeEEEEcC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSG 394 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~ 394 (501)
+++.++.+.+|++.. ..+...+......+.. ...... ......+.+++|+|
T Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp EEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred EEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 778888899999864 3332222211000000 000000 00111237899999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccC
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS 473 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~ 473 (501)
+|++|++++ ||.+.+|++.... ..+.+.+.+++|+| ++++ +++++.++. .+|+ ...++.
T Consensus 367 dg~~la~~~-~~~~~i~~~~~~~------~~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~ 426 (814)
T 3mkq_A 367 NGRFVTVVG-DGEYVIYTALAWR------NKAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVT 426 (814)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTE------EEEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECT
T ss_pred CCCEEEEec-CCEEEEEECcccc------ccCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCcc
Confidence 999999998 8999999986431 12346788999998 7777 999999998 9993 223566
Q ss_pred CCeEEEEEccCC---CEEEEee-CCeEEEEe
Q 010801 474 SKLLHLAWHPTT---NLIACAN-GNSLFFHY 500 (501)
Q Consensus 474 ~~i~~~~~sp~~---~~la~~~-~~~~~i~~ 500 (501)
..+.+++|+|++ ..|++++ ++.+++|+
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 688899999998 4555544 67799997
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.5e-34 Score=262.22 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=193.7
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ +++++|++|+.|++|++||+.++..
T Consensus 3 ~~~~~h~------------~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~------------------------- 43 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETH------------------------- 43 (297)
T ss_dssp EECCSCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred eeccCCc------------CceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence 4577888 899999998 8999999999999999999875321
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+++..+ .+|...|++++|++ ++++|++| .|++|++||++.+.
T Consensus 44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 111222 78999999999986 38899999 99999999998432
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.... .+.+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ... +.+|..
T Consensus 90 ~~~~-------~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~-------------~~~h~~ 146 (297)
T 2pm7_B 90 SQIA-------VHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII-------------IDAHAI 146 (297)
T ss_dssp CCCE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE-------------EECCSS
T ss_pred EEEE-------EeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee-------------eecccC
Confidence 1222 25678999999999997 6 899999999999999998753210 012 245778
Q ss_pred ceeEEEEeeC-------------CCEEEEEc-CCcEEEEEeeCCCC----ceeEeeccccccccccccCCCCCcceeeEE
Q 010801 329 SISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 329 ~i~~~~~sp~-------------~~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
.|.+++|+|+ +++|++|+ |+.|++||++. ++ ....+.+|...+ .++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v 210 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDV 210 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEE
Confidence 9999999997 56888885 69999999986 44 456777888765 799
Q ss_pred EEcCCC---cEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcc
Q 010801 391 SVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHE 467 (501)
Q Consensus 391 ~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~ 467 (501)
+|+|++ ++|++++.|++|+|||+.+....... ..+
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~----------~~~-------------------------------- 248 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK----------TLL-------------------------------- 248 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE----------EES--------------------------------
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccce----------eee--------------------------------
Confidence 999984 89999999999999999764211000 000
Q ss_pred cccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 468 LSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 468 ~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
....|...|.+++|+|++++||+++.|+ +++|+
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 0113445788999999999999888554 88886
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.6e-34 Score=274.23 Aligned_cols=281 Identities=13% Similarity=0.185 Sum_probs=229.2
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------ 147 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 147 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 5778999975 5888875 899999999988642 223445676
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|++|+|+ |+|++|++|+.||+|++||+.+++.....
T Consensus 148 ~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~~~~~~~---------------------------------------- 185 (420)
T 4gga_A 148 EYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 185 (420)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------
T ss_pred CcEEEEEEC--CCCCEEEEEECCCeEEEEEcCCCcEEEEE----------------------------------------
Confidence 889999998 89999999999999999999988755432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...+.+++++ +..+++| .|+.+++||.......... +.+|...+..
T Consensus 186 ---------------------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~ 235 (420)
T 4gga_A 186 ---------------------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 235 (420)
T ss_dssp ---------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceee
Confidence 6888899888774 6789998 9999999999855555443 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE--c-CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~--~-~~ 348 (501)
+.|+|++ +++++++.|+.+++||..+++........ ...|...|.+++|+|++. +++++ + |+
T Consensus 236 ~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~-------------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 236 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT-------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE-------------ECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred eeecCCC-CeeeeeeccccceEEeeccccccceeeee-------------ecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 9999999 99999999999999999887543222222 234678999999999765 55543 3 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecCCCCcceEEEecc
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
.|++||+.+ +++...+..+... .++.|+|+++.+++++ .|+.|+|||+.+++. ..++.+|
T Consensus 302 ~I~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH 363 (420)
T 4gga_A 302 HIRIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGH 363 (420)
T ss_dssp EEEEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCC
T ss_pred EEEEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCC
Confidence 999999986 8888887766543 6899999999988765 689999999998854 5889999
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+.|.+++|+| ++.+ |++|+.|+. ++|+..+
T Consensus 364 ~~~V~~l~~sp--dg~~-----l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 364 TSRVLSLTMSP--DGAT-----VASAAADETLRLWRCFE 395 (420)
T ss_dssp SSCEEEEEECT--TSSC-----EEEEETTTEEEEECCSC
T ss_pred CCCEEEEEEcC--CCCE-----EEEEecCCeEEEEECCC
Confidence 99999999999 7888 999999999 9996543
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.2e-34 Score=268.07 Aligned_cols=272 Identities=12% Similarity=0.121 Sum_probs=210.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||.|+|||+.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence 36999999999999999999999999999999987643 345667788998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+|..++.+|++++.||.|++||+.+++.....
T Consensus 58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------------------- 97 (351)
T 3f3f_A 58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG----------------------------------- 97 (351)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----------------------------------
Confidence 8999999984226899999999999999999876421100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeee------cC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVD------MK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~------~~ 259 (501)
...++...+ ..|...|.+++|+|+ +.+|+++ .|+.|++||++... ....+. ..
T Consensus 98 ----------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 98 ----------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-DLRSWTLTSEMKVL 159 (351)
T ss_dssp ----------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT-CTTCCEEEEEEESC
T ss_pred ----------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH-Hhcccccccccccc
Confidence 001223333 688999999999999 9999998 99999999998443 222111 11
Q ss_pred CCCCCCcccceEEEEEecC---CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
......|...+.+++|+|+ + .+|++++.++.+.+|+...+... ... .+.+|...|.+++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~~h~~~i~~~~~~ 223 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH----VAA-----------KLPGHKSLIRSISWA 223 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE----EEE-----------ECCCCCSCEEEEEEC
T ss_pred ccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee----eee-----------ecCCCCcceeEEEEC
Confidence 1123467889999999997 6 89999999999988887765421 111 124577899999999
Q ss_pred eCC----CEEEEEc-CCcEEEEEeeCCC---------------------------------------------CceeEee
Q 010801 337 NDG----QHLLSRD-YMNLKLWDIRMDS---------------------------------------------TPVATFK 366 (501)
Q Consensus 337 p~~----~~l~~~~-~~~i~lwd~~~~~---------------------------------------------~~~~~~~ 366 (501)
|++ ++|++++ |+.|++||++... +.+..+.
T Consensus 224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 998 7888885 5999999998521 3444455
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+|...+ ++++|+|++++|++|+.||.|+||++.+++..
T Consensus 304 ~h~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 304 DHNGEV---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp TTSSCE---------------EEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccE---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 555543 89999999999999999999999999987543
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-34 Score=275.77 Aligned_cols=273 Identities=12% Similarity=0.146 Sum_probs=208.4
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE 113 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~ 113 (501)
+.+++|++ ..+++++.||.|++|++.+++.. ..+.. |.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---------------------------~~~~~~~~------------ 134 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS---------------------------ALAETDES------------ 134 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEE---------------------------EEEECCTT------------
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---------------------------EeeecCCC------------
Confidence 45566664 55778889999999999877541 33333 66
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+ |++.+|++++.||.|++||+.+++.....
T Consensus 135 ~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------------- 172 (401)
T 4aez_A 135 TYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTM---------------------------------------- 172 (401)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEE----------------------------------------
T ss_pred CCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEe----------------------------------------
Confidence 889999998 78999999999999999999887644432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...|.+++| +++.+++| .|+.|++||++........ +.+|...|.+
T Consensus 173 ---------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~ 222 (401)
T 4aez_A 173 ---------------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCG 222 (401)
T ss_dssp ---------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeE
Confidence 688999999999 45789998 9999999999855544443 5679999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEc---CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~---~~ 348 (501)
++|+|++ ++|++++.||.|++||+++++.. ..+ .+|...|.+++|+|++. ++++++ |+
T Consensus 223 ~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~-------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 223 LAWRSDG-LQLASGGNDNVVQIWDARSSIPK----FTK-------------TNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTCSSEE----EEE-------------CCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred EEEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EEe-------------cCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 9999998 99999999999999999986433 222 23678999999999765 555654 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCCCcc-eEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAG-GITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~-~~~~~~ 425 (501)
.|++||+++ ++.+..+..+.. + .+++|+|++++|+++ +.||.|++|++.++... ...+.+
T Consensus 285 ~i~i~d~~~-~~~~~~~~~~~~-v---------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 285 QIHFWNAAT-GARVNTVDAGSQ-V---------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp EEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEECCC-CCEEEEEeCCCc-E---------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 999999986 777777764332 2 799999999999984 48999999999876332 223456
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|...+..++++| ++.+ |++++.|+. .+|+.
T Consensus 348 h~~~v~~~~~s~--dg~~-----l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 348 HDTRVLYSALSP--DGRI-----LSTAASDENLKFWRV 378 (401)
T ss_dssp CSSCCCEEEECT--TSSE-----EEEECTTSEEEEEEC
T ss_pred CCCCEEEEEECC--CCCE-----EEEEeCCCcEEEEEC
Confidence 666555555555 4444 555555555 55533
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-34 Score=270.26 Aligned_cols=285 Identities=10% Similarity=0.027 Sum_probs=226.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|++++||+|+.||.|+||++.+++. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~-------- 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK-------- 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence 6899999999999999999999999999999987642 11224455788
Q ss_pred cccccceeEEEEeecCCCC-EEEEeeCCCeEEEEec-cccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|+ ++++ +|++++.||.|++||+ .+++....
T Consensus 57 ----~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------------------------------- 95 (342)
T 1yfq_A 57 ----HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQAL----------------------------------- 95 (342)
T ss_dssp ----SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEEC-----------------------------------
T ss_pred ----CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEec-----------------------------------
Confidence 889999998 6789 9999999999999999 77653221
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCC--cccceEEEEecCCCCEEEEE-cCCeEEEEECCCC--------Ceeeeee
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIV 256 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~ 256 (501)
.+ |...|.+++|+| ++.++++ .|+.|++||++.. .+.+.
T Consensus 96 ---------------------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 145 (342)
T 1yfq_A 96 ---------------------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-- 145 (342)
T ss_dssp ---------------------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred ---------------------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence 46 899999999999 9999998 9999999998830 22222
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
.+. |...|.+++|+|++ +++++.|+.|++||+++ +.... .... ..|...+.+++|
T Consensus 146 -----~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~~------------~~~~~~i~~i~~ 201 (342)
T 1yfq_A 146 -----NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIEE------------SGLKYQIRDVAL 201 (342)
T ss_dssp -----SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEEE------------CSCSSCEEEEEE
T ss_pred -----EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eeee------------cCCCCceeEEEE
Confidence 233 88899999999875 99999999999999987 43211 1111 234678999999
Q ss_pred ee-CCCEEEEEc-CCcEEEEEeeCC-----CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 336 AN-DGQHLLSRD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 336 sp-~~~~l~~~~-~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+| +++++++++ ++.|++|+++.. .+....+..|...... ......+.+++|+|++++|++++.||.|
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEEcCCCCEEEEecCCceE
Confidence 99 999999886 599999999863 2777888877541100 0001123799999999999999999999
Q ss_pred EEEecCCCCcceEEEecc-cCcccceeeccCCccccCccceeeeecccce
Q 010801 409 RIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
++||+.+++ ....+.+| ..+|.+++ + ++.+ |++++.|+.
T Consensus 276 ~vwd~~~~~-~~~~~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 276 SCWNLQTRK-KIKNFAKFNEDSVVKIA--C--SDNI-----LCLATSDDT 315 (342)
T ss_dssp EEEETTTTE-EEEECCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred EEEcCccHh-HhhhhhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence 999999884 45778888 99999988 4 7777 999998887
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.4e-34 Score=288.06 Aligned_cols=346 Identities=14% Similarity=0.125 Sum_probs=264.0
Q ss_pred ccccc-eEEEEEcc--CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~-v~~v~~s~--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|.+. |++++|+| ++++||+|+.||.|+|||+.+++.. ..........+.+|.
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~~~~~~~----- 116 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA----- 116 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS-----
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-------------------ccccccccchhhccc-----
Confidence 58899 99999999 9999999999999999999755110 000223556778888
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ |++++|++++.+ +.|++||. ++...... .+...+..+.+.++.
T Consensus 117 -------~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~-------------~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 117 -------GPISDISWD--FEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-------------GHSQRINACHLKQSR 172 (615)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-------------SCSSCEEEEEECSSS
T ss_pred -------ccEEEEEEe--CCCCEEEEeccCCCCccEEEEEEC--CCcceeee-------------cCCccEEEEEECCCC
Confidence 889999998 899999999987 78999983 33333221 123345555666666
Q ss_pred c-ccccceeccCcceEEEeccCceeeeeeEeecCCccc---ceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeee
Q 010801 183 A-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 183 ~-~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (501)
. .++.+.. ++.+++|+... .++...+ .+|.. .|.+++|+|+ +++|+++ .|+.|++||+... +....
T Consensus 173 ~~~l~~~~~--d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~- 244 (615)
T 1pgu_A 173 PMRSMTVGD--DGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKY- 244 (615)
T ss_dssp SCEEEEEET--TTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEE-
T ss_pred CcEEEEEeC--CCcEEEEeCCC---cceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEE-
Confidence 5 4555543 88999999876 4455555 68888 9999999999 9999998 9999999999844 44443
Q ss_pred ecCCCCC-C---CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc--------------------------
Q 010801 257 DMKPSNM-D---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-------------------------- 306 (501)
Q Consensus 257 ~~~~~~~-~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------------------------- 306 (501)
+ . .|...|.+++|+ ++ ++|++++.||.|++||+++++.....
T Consensus 245 ------~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 245 ------IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316 (615)
T ss_dssp ------CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred ------ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence 3 4 789999999999 87 99999999999999999865321100
Q ss_pred ---------------cceeecccc------------------------------------------c-------------
Q 010801 307 ---------------ARILRDAAE------------------------------------------S------------- 316 (501)
Q Consensus 307 ---------------~~~~~~~~~------------------------------------------~------------- 316 (501)
...+..|.. .
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK 396 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEE
Confidence 000000000 0
Q ss_pred ---------------------------------------C-----------------------------CC---------
Q 010801 317 ---------------------------------------H-----------------------------GS--------- 319 (501)
Q Consensus 317 ---------------------------------------~-----------------------------~~--------- 319 (501)
. ..
T Consensus 397 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 397 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred EEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCC
Confidence 0 00
Q ss_pred --c--ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeec-cccccccccccCCCCCcceeeEEEEc
Q 010801 320 --K--SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 320 --~--~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
. ..+.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...+ ++++|+
T Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v---------------~~~~~s 540 (615)
T 1pgu_A 477 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWK 540 (615)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEEC
T ss_pred ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce---------------eEEEEc
Confidence 0 22345788999999999999999986 59999999986 777777776 76655 799999
Q ss_pred C----------CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 394 G----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 394 ~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
| ++++|++++.||.|++||+.++......+.+|...|.+++|+|.. + |++++.|+. .+|+.
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~------l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--T------LVSSGADACIKRWNV 612 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--E------EEEEETTSCEEEEEE
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--C------eEEecCCceEEEEee
Confidence 9 999999999999999999998866668899999999999999952 2 688999999 99954
Q ss_pred c
Q 010801 463 S 463 (501)
Q Consensus 463 ~ 463 (501)
.
T Consensus 613 ~ 613 (615)
T 1pgu_A 613 V 613 (615)
T ss_dssp C
T ss_pred e
Confidence 3
No 76
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-34 Score=276.79 Aligned_cols=288 Identities=14% Similarity=0.183 Sum_probs=219.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..+....|+|++++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~----------- 139 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---------------------------QREIDQAHV----------- 139 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---------------------------EEEETTSSS-----------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---------------------------eeeeccccc-----------
Confidence 556666889999999999999999999988654 335667898
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|++++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 140 -~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------------------------- 177 (420)
T 3vl1_A 140 -SEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTL--------------------------------------- 177 (420)
T ss_dssp -SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEE---------------------------------------
T ss_pred -CccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------------------------------
Confidence 899999998 78999999999999999999887643322
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc----
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT---- 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---- 267 (501)
.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+... ..+.
T Consensus 178 ----------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~ 230 (420)
T 3vl1_A 178 ----------------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVN 230 (420)
T ss_dssp ----------------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEE
T ss_pred ----------------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCcc
Confidence 5889999999999999999999 99999999999 44444443211 1233
Q ss_pred -----------------cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 268 -----------------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 268 -----------------~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
..+.+++|+|++ ++|++++.||.|++||+++++.. ..+. .+|...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~------------~~~~~~v 293 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP------------SKFTCSC 293 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC------------CTTSSCE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc------------cccCCCc
Confidence 444555567888 99999999999999999887533 1111 2356789
Q ss_pred eEEEEeeCCC-EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~-~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.+++|+|+++ +|++++ |+.|++||+++...++..+..|.... +..+ +.+++++|++++.||.|
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSI 358 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEE
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccE
Confidence 9999999998 888886 59999999987445577777743322 1455 45688999999999999
Q ss_pred EEEecCCCCc--------ceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 409 RIFSHGVGSA--------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 409 ~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
++|++..... ....+..|...+..++|+|. +.. -..++..+.++. .+|+..
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~--~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD--DES--NGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC--SSS--SCEEEEEETTTEEEEEESC
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEccC--CCC--cceEEEEcCCceEEEEecc
Confidence 9999987422 23457788999999999994 440 000444445566 888543
No 77
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-33 Score=260.68 Aligned_cols=245 Identities=14% Similarity=0.261 Sum_probs=201.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|++++|++|+.||.|++||+.+++ ....+++|.
T Consensus 63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~-------- 107 (312)
T 4ery_A 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHS-------- 107 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------------EEEEEcCCC--------
Confidence 588999999999999999999999999999998764 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 108 ----~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------ 145 (312)
T 4ery_A 108 ----NYVFCCNFN--PQSNLIVSGSFDESVRIWDVKTGKCLKTL------------------------------------ 145 (312)
T ss_dssp ----SCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCEEEEEe------------------------------------
Confidence 889999998 78899999999999999999887644332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...|.+++|+|++++|++| .|+.|++||++.. +.+..+ ...+..
T Consensus 146 -------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~------~~~~~~ 193 (312)
T 4ery_A 146 -------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTL------IDDDNP 193 (312)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------CCSSCC
T ss_pred -------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeEE------eccCCC
Confidence 6788899999999999999999 9999999999944 443332 345677
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+..++|+|++ ++|++++.||.|++||+++++.. ..+..|... ...+......+++++|++|+ |
T Consensus 194 ~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 194 PVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp CEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTT
T ss_pred ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCC
Confidence 89999999999 99999999999999999987543 333331110 01222333346788999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 414 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 414 (501)
+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++++ .|+.|++|+.+
T Consensus 259 g~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999986 88889999988765 7899999999999987 69999999865
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.4e-34 Score=272.43 Aligned_cols=299 Identities=10% Similarity=0.098 Sum_probs=229.8
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.....+++|. +.|++++|+ + ++|++++.||.|++|++.+++....
T Consensus 7 ~~~~~~~~h~------------~~i~~~~~~--~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------- 51 (397)
T 1sq9_A 7 ATANAGKAHD------------ADIFSVSAC--N--SFTVSCSGDGYLKVWDNKLLDNENP------------------- 51 (397)
T ss_dssp EEEEESSCSS------------SCEEEEEEC--S--SEEEEEETTSEEEEEESBCCTTCCG-------------------
T ss_pred hhhhhhhhhh------------cCeEEEEec--C--CeEEEEcCCCEEEEEECCCcccccC-------------------
Confidence 3456788999 999999997 4 7999999999999999987651110
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC----C---CEEEEE-cCCeEEE
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----C---ETFVSA-DDLRINL 243 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~---~~l~~~-~d~~i~i 243 (501)
..+...+ .+|...|.+++|+|+ + ++|+++ .|+.|++
T Consensus 52 -----------------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 52 -----------------------------------KDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp -----------------------------------GGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred -----------------------------------CCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 0011112 588999999999999 9 999998 9999999
Q ss_pred EECCCCCee----eeeeecCCCCCCCc-----ccceEEEEEe----cCCCcE-EEEEeCCCeEEEEEccC------Cccc
Q 010801 244 WNLEISDQC----FNIVDMKPSNMDDL-----TEVITSAEFH----PIYCNL-LAYSSSRGFVRLVDMRQ------SALC 303 (501)
Q Consensus 244 wd~~~~~~~----~~~~~~~~~~~~~~-----~~~v~~v~~~----p~~~~~-l~~~~~dg~i~~wd~~~------~~~~ 303 (501)
||+...... ... +..| ...|.+++|+ |++ ++ |++++.||.|++||+++ ++..
T Consensus 96 w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 96 YRITREDETKKVIFEK-------LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEECTTTCCEEEEE-------ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred EEccCCccccccccee-------ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 999844421 222 4556 5899999999 998 88 99999999999999987 4332
Q ss_pred ccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeec---c---ccccccc
Q 010801 304 DHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI---H---EHLRPKL 375 (501)
Q Consensus 304 ~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~---~---~~~~~~~ 375 (501)
... ...+... ......|...|.+++|+|++ +|++++ ++.|++||+++ ++++..+.. | ...+
T Consensus 168 ~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i--- 236 (397)
T 1sq9_A 168 NWSPTLELQGT------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI--- 236 (397)
T ss_dssp CCCCEEEEEEE------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE---
T ss_pred eccCcceeeee------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc---
Confidence 100 0011100 00002367889999999999 888886 59999999986 788888887 6 5544
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEec-------------ccCcccceeeccCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEA-------------GKNENRKPILQAAP 439 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~ 439 (501)
.+++|+|++++|++++.| |.|++||+.+++ ....+.. |...+.+++++|
T Consensus 237 ------------~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 301 (397)
T 1sq9_A 237 ------------RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-- 301 (397)
T ss_dssp ------------EEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECS--
T ss_pred ------------ceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECC--
Confidence 799999999999999999 999999999884 4477888 999999999998
Q ss_pred ccccCccceeeeecccce-eecccc--CCccccc------cc---------------CCCeEEEEEccCC----------
Q 010801 440 RARRSSLSNLTRGLYRQA-HENSSS--GHHELSY------NL---------------SSKLLHLAWHPTT---------- 485 (501)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~------~~---------------~~~i~~~~~sp~~---------- 485 (501)
++++ |++++.|+. .+|+.. +...... .| ...|++++|+|++
T Consensus 302 ~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 SGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp SSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 6777 999999999 999543 3333444 56 8999999999998
Q ss_pred CEEEEee-CCeEEEEe
Q 010801 486 NLIACAN-GNSLFFHY 500 (501)
Q Consensus 486 ~~la~~~-~~~~~i~~ 500 (501)
++|++++ ++.+++|+
T Consensus 377 ~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CEEEEEETTTEEEEEE
T ss_pred ceEEEecCCCcEEEEE
Confidence 7899888 55599996
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-34 Score=292.27 Aligned_cols=259 Identities=19% Similarity=0.300 Sum_probs=203.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|++++|+|+|++|++|+.||+|+|||+.+++. ...+.+|.
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---------------------------~~~~~~h~------- 472 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS---------------------------TRRFVGHT------- 472 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc---------------------------eeEEeCCC-------
Confidence 46999999999999999999999999999999987643 36788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|++|++||...........
T Consensus 473 -----~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---------------------------------- 511 (694)
T 3dm0_A 473 -----KDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISE---------------------------------- 511 (694)
T ss_dssp -----SCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECS----------------------------------
T ss_pred -----CCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeecc----------------------------------
Confidence 889999998 789999999999999999986543222110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
...+|...|.+++|+|++ ..+++| .|++|++||++ ..+.... +.+
T Consensus 512 ------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~~~ 559 (694)
T 3dm0_A 512 ------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------LAG 559 (694)
T ss_dssp ------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------ECC
T ss_pred ------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------EcC
Confidence 015788999999999987 578888 99999999998 4444443 678
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|++++|+|++ ++|++++.||.|++||+++++.. ..+.. ...+.+++|+|++.+|+++
T Consensus 560 h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 560 HTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEE
T ss_pred CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEE
Confidence 99999999999999 99999999999999999987643 22222 3579999999999999999
Q ss_pred cCCcEEEEEeeCCCCceeEeecccccccccc----ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.++.|++||+++ ++.+..+..+........ ..........+++++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 888899999986 776666654322110000 00001112224789999999999999999999999985
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=257.23 Aligned_cols=280 Identities=12% Similarity=0.167 Sum_probs=220.4
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
..++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------ 67 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 67 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 46889999876 788775 999999999988642 222345666
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|++++|+ +++++|++|+.|++|++|++++++.....
T Consensus 68 ~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---------------------------------------- 105 (318)
T 4ggc_A 68 EYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 105 (318)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CeEEEEEEC--CCCCEEEEEECCCcEEEeecCCceeEEEe----------------------------------------
Confidence 889999998 89999999999999999999988755432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...+.++.+ ++..++++ .++.+++|+.......... +.+|...+..
T Consensus 106 ---------------------~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 155 (318)
T 4ggc_A 106 ---------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 155 (318)
T ss_dssp ---------------------ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEE
Confidence 577777766554 56789998 9999999998855555443 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE---EEc-CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRD-YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~---~~~-~~ 348 (501)
+.+.+++ ++|++++.||.|++||+++++......... ..|...|..+.++|++..++ +++ ++
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE-------------CCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcccccceeee-------------cccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 9999999 999999999999999999875432211211 23567899999999776443 333 49
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecCCCCcceEEEecc
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
.|++||.+. ........ +...+ ..+.|+|+++.+++++ .|+.|+|||+.+++ ...++.+|
T Consensus 222 ~i~lwd~~~-~~~~~~~~-~~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~gH 283 (318)
T 4ggc_A 222 HIRIWNVCS-GACLSAVD-AHSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGH 283 (318)
T ss_dssp EEEEEETTT-CCEEEEEE-CSSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCC
T ss_pred EEEEEeccc-cccccccc-ceeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEcCC
Confidence 999999975 55444443 33322 6899999999887655 79999999999885 45889999
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+.|.+++|+| ++++ |++|+.|+. ++|+..
T Consensus 284 ~~~V~~l~~sp--dg~~-----l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 284 TSRVLSLTMSP--DGAT-----VASAAADETLRLWRCF 314 (318)
T ss_dssp SSCEEEEEECT--TSSC-----EEEEETTTEEEEECCS
T ss_pred CCCEEEEEEcC--CCCE-----EEEEecCCeEEEEECC
Confidence 99999999999 7888 999999999 999654
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=297.64 Aligned_cols=257 Identities=15% Similarity=0.212 Sum_probs=204.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||.|+|||+.++ .......+.+|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~------- 53 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------- 53 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCc-------
Confidence 369999999999999999999999999999998854 234567889998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++|+.||.|++||+.+++....
T Consensus 54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~------------------------------------ 92 (753)
T 3jro_A 54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------ 92 (753)
T ss_dssp -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc------------------------------------
Confidence 899999998544489999999999999999988752221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ ++.+++| .||.|++||++........ .+.+
T Consensus 93 ----------------------~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~ 143 (753)
T 3jro_A 93 ----------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA 143 (753)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEEC
T ss_pred ----------------------ccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Eeec
Confidence 112 688999999999999 9999999 9999999999854322221 2567
Q ss_pred cccceEEEEEec-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 266 ~~~~v~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
|...|.+++|+| ++ .+|++++.||.|++||++++......... +.+|...|.+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------~~~h~~~V~~ 209 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRD 209 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEE
T ss_pred CCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee-------------ecCCCCcEEE
Confidence 889999999999 46 89999999999999999886432111122 3457889999
Q ss_pred EEEeeC---CCEEEEEc-CCcEEEEEeeCCCC----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 333 IKFAND---GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 333 ~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++|+|+ +++|++++ ||.|++||+++... .......|...+ ++++|+|+|++|++|+.
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG 274 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcC
Confidence 999999 89999886 59999999986211 122222233333 68999999999999999
Q ss_pred CCeEEEEecCCC
Q 010801 405 SNLLRIFSHGVG 416 (501)
Q Consensus 405 dg~i~iwd~~~~ 416 (501)
||.|++|++.++
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999864
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-33 Score=266.98 Aligned_cols=249 Identities=14% Similarity=0.245 Sum_probs=198.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|++++|+|+|++||+|+.||.|++||+.+++. ...+.+|.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~--------- 176 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---------------------------LRTMAGHQ--------- 176 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS---------
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE---------------------------EEEecCCC---------
Confidence 788999999999999999999999999999987653 46778898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. +..|++++.|+.|++||+.... ....
T Consensus 177 ---~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------- 212 (401)
T 4aez_A 177 ---ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGT------------------------------------- 212 (401)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------------
T ss_pred ---CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeE-------------------------------------
Confidence 889999995 4699999999999999998432 2211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
+ .+|...|.+++|+|++++|++| .|+.|++||++. ...... +..|..
T Consensus 213 -----------------------~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~-------~~~~~~ 260 (401)
T 4aez_A 213 -----------------------L-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFT-------KTNHNA 260 (401)
T ss_dssp -----------------------E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-SSEEEE-------ECCCSS
T ss_pred -----------------------E-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC-CCccEE-------ecCCcc
Confidence 1 5789999999999999999999 999999999994 333332 567899
Q ss_pred ceEEEEEecCCCcEEEEEe--CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE--
Q 010801 269 VITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-- 344 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~-- 344 (501)
.|.+++|+|++..++++++ .|+.|++||+++++.. ..+.. ...+.+++|+|++++|++
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEe
Confidence 9999999998867788766 7999999999987543 33322 467999999999999998
Q ss_pred E-cCCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 345 R-DYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
| .++.|++||+.+ ++... .+.+|...+ .+++|+|++++|++++.||.|++|++.+++.+..
T Consensus 323 g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 323 GFPDNNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTTCEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCCcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 4 359999999985 44443 355676654 7899999999999999999999999998865543
Q ss_pred EEec
Q 010801 422 TVEA 425 (501)
Q Consensus 422 ~~~~ 425 (501)
.+..
T Consensus 387 ~~~~ 390 (401)
T 4aez_A 387 PIPI 390 (401)
T ss_dssp ----
T ss_pred cccc
Confidence 3333
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=264.16 Aligned_cols=289 Identities=12% Similarity=0.107 Sum_probs=221.1
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEE-EeeC---CCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~-s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
...+++|. ..|.+++|+ |++..++ +++. |+.|++||+.+++.....
T Consensus 11 ~~~~~~h~------------~~v~~~~~~--p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~---------------- 60 (357)
T 3i2n_A 11 AHIQKGFN------------YTVFDCKWV--PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR---------------- 60 (357)
T ss_dssp EEEEEECS------------SCEEEEEEC--TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------
T ss_pred hhhccCCC------------CceEEEEEc--CCCceEEEecCccCCCcEEEEEeCCCCccccee----------------
Confidence 34567898 899999998 7775555 5555 999999999987644321
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEE
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWN 245 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd 245 (501)
..+|...|.+++|+|+ +++|++| .|+.|++||
T Consensus 61 --------------------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 61 --------------------------------------------EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp --------------------------------------------EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred --------------------------------------------eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 0367889999999998 6899998 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEE------ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEF------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
+......... +.+|...|.+++| +|++ ++|++++.||.|++||+++++... ..+..+..
T Consensus 97 ~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~---- 161 (357)
T 3i2n_A 97 LEAPEMPVYS-------VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQG---- 161 (357)
T ss_dssp TTSCSSCSEE-------ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS---EEECCCTT----
T ss_pred CCCCCccEEE-------EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc---eeccccCC----
Confidence 9955524443 6789999999965 6788 899999999999999999875221 33332110
Q ss_pred cceeeecccceeEEE----EeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 320 KSFFTEIIASISDIK----FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 320 ~~~~~~h~~~i~~~~----~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.+...+.+++ |+|++++|++++ ++.|++||+++ ++... ...|...+ .+++|+|
T Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~v---------------~~~~~~~ 219 (357)
T 3i2n_A 162 -----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MALRW-ETNIKNGV---------------CSLEFDR 219 (357)
T ss_dssp -----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEEEE-EEECSSCE---------------EEEEESC
T ss_pred -----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cceee-ecCCCCce---------------EEEEcCC
Confidence 0124788888 788999999986 49999999985 55433 34455443 7999999
Q ss_pred ---CCcEEEEEeCCCeEEEEecCCCCcce----EEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC-
Q 010801 395 ---DGLHFATGSYSNLLRIFSHGVGSAGG----ITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG- 464 (501)
Q Consensus 395 ---~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~- 464 (501)
++.+|++++.||.|++||+.+++... ..+.+|...+.+++++| ++. + +++++.|+. .+|+...
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-----l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP--QNREL-----FLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET--TEEEE-----EEEEETTSEEEEEEEECC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC--CCCcE-----EEEEeCCCcEEEeecCCC
Confidence 99999999999999999998764431 13449999999999999 555 6 899999999 9995441
Q ss_pred --------------------CcccccccCCCeEEEEEccCCCEEE-Eee-CCeEEEEe
Q 010801 465 --------------------HHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHY 500 (501)
Q Consensus 465 --------------------~~~~~~~~~~~i~~~~~sp~~~~la-~~~-~~~~~i~~ 500 (501)
.+.....|...|++++|+|++++|+ +++ ++.+++|+
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 2334557889999999999999998 677 55699997
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2e-33 Score=260.21 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=191.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ +++++|++|+.|++|++||+.++....
T Consensus 7 ~~~~~H~------------~~V~~v~~s--~~g~~lasgs~D~~v~lwd~~~~~~~~----------------------- 49 (316)
T 3bg1_A 7 TVDTSHE------------DMIHDAQMD--YYGTRLATCSSDRSVKIFDVRNGGQIL----------------------- 49 (316)
T ss_dssp -------------------CCEEEEEEC--GGGCEEEEEETTTEEEEEEEETTEEEE-----------------------
T ss_pred eeccccc------------CeEEEeeEc--CCCCEEEEEeCCCeEEEEEecCCCcEE-----------------------
Confidence 3467888 999999998 789999999999999999998764221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+..+ .+|...|++++|++ ++++|++| .|++|++||++...
T Consensus 50 -----------------------------------~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 50 -----------------------------------IADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp -----------------------------------EEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred -----------------------------------EEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 1122 68999999999976 48899998 99999999998432
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.... .+.+|...|.+++|+|+ + .+|++++.|+.|++||++.+... ... ..+.+|..
T Consensus 94 ~~~~-------~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~~----------~~~~~h~~ 151 (316)
T 3bg1_A 94 EKSH-------EHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EVK----------KINNAHTI 151 (316)
T ss_dssp CEEE-------EECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EEC----------CBTTSSSS
T ss_pred eEEE-------EccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----cee----------eeeccccC
Confidence 1222 25789999999999998 6 89999999999999999875311 000 11234677
Q ss_pred ceeEEEEeeC-----------------CCEEEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceee
Q 010801 329 SISDIKFAND-----------------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 329 ~i~~~~~sp~-----------------~~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.+.+++|+|+ +++|++|+ |+.|++||++... +++..+.+|...+ .
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~ 216 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------R 216 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------E
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------E
Confidence 8999999997 46888885 6999999997422 3566777887765 7
Q ss_pred EEEEcCCC----cEEEEEeCCCeEEEEecCCC---CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 389 ECSVSGDG----LHFATGSYSNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 389 ~~~~s~~~----~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+++|+|++ ++|++++.||+|+||++.+. ......+..|...+.+++|+| ++.+ |++++.|+. ++|
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw 289 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLW 289 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEE
Confidence 99999986 89999999999999999763 222345677888888888888 6666 888888888 888
Q ss_pred cc
Q 010801 461 SS 462 (501)
Q Consensus 461 ~~ 462 (501)
+.
T Consensus 290 ~~ 291 (316)
T 3bg1_A 290 KE 291 (316)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-33 Score=266.76 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=203.0
Q ss_pred cccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 31 h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
|...|++++|+|+ |++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~----- 115 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG----- 115 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC-----
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC-----
Confidence 6788999999999 6799999999999999988664 346788898
Q ss_pred ccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ | ++.+|++++.||.|++||+.+++.......
T Consensus 116 -------~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------ 156 (366)
T 3k26_A 116 -------NAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------------------------ 156 (366)
T ss_dssp -------SCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------------------------
T ss_pred -------CcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------------------------
Confidence 899999998 6 789999999999999999988765443210
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec------
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------ 258 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------ 258 (501)
+.+|...|.+++|+|++++|+++ .|+.|++||++.. +....+..
T Consensus 157 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~ 207 (366)
T 3k26_A 157 ----------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNP 207 (366)
T ss_dssp ----------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCG
T ss_pred ----------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEEecC
Confidence 14788999999999999999999 9999999999843 22211100
Q ss_pred ---------------CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 259 ---------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 259 ---------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
.......|...|.+++|+ + ++|++++.||.|++||+++..... ..+..+.........+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRF 281 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEE
T ss_pred CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccc
Confidence 000123488999999999 5 799999999999999998865321 1111111111122345
Q ss_pred eecccceeEEEEeeC--CCEEEEEc-CCcEEEEEeeCCCCce----eEeecc--ccccccccccCCCCCcceeeEEEEcC
Q 010801 324 TEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIRMDSTPV----ATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~--~~~l~~~~-~~~i~lwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.+|...|.+++|+|+ +++|++++ ++.|++||+.. +++. ..+.+| ...+ ++++|+|
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~ 345 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAI---------------RQTSFSR 345 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCE---------------EEEEECT
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCce---------------EEEEeCC
Confidence 678889999999999 99999986 59999999986 5433 356666 3333 7999999
Q ss_pred CCcEEEEEeCCCeEEEEecC
Q 010801 395 DGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++|++++.||.|++||+.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999985
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=266.33 Aligned_cols=273 Identities=12% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|...|.|++| ++++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-------- 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT-------- 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence 45677999887 79999999999999999998765 346788998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++| ++++|++|+.||+|++||+.+++.....
T Consensus 174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------------------------------ 209 (435)
T 1p22_A 174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTL------------------------------------ 209 (435)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEE------------------------------------
T ss_pred ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEE------------------------------------
Confidence 88999998 5779999999999999999987754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|++ ..+++| .|+.|++||+......... ..+.+|..
T Consensus 210 -------------------------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~ 257 (435)
T 1p22_A 210 -------------------------IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRA 257 (435)
T ss_dssp -------------------------CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSS
T ss_pred -------------------------cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCC
Confidence 67889999999974 588888 9999999999854432110 02578999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++| ++ ++|++++.||.|++||+++++.. ..+ .+|...|.++.++ ++++++|+ |
T Consensus 258 ~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~-------------~~~~~~v~~~~~~--~~~l~~g~~d 315 (435)
T 1p22_A 258 AVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RTL-------------NGHKRGIACLQYR--DRLVVSGSSD 315 (435)
T ss_dssp CEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCEEEEEEE--TTEEEEEETT
T ss_pred cEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EEE-------------cCCCCcEEEEEeC--CCEEEEEeCC
Confidence 9999999 55 88999999999999999987543 333 3467889999884 67888875 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc--------c
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------G 419 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------~ 419 (501)
+.|++||+++ ++.+..+.+|...+ .+++| ++++|++|+.||.|++||+.++.. .
T Consensus 316 g~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 316 NTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred CeEEEEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 9999999986 88899999888765 67777 788999999999999999976531 4
Q ss_pred eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
...+.+|...|.++++ ++.. |++|+.|+. .+|+...
T Consensus 378 ~~~~~~h~~~v~~l~~----~~~~-----l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF----DEFQ-----IVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEECCCSSCCCCEEE----CSSC-----EEECCSSSEEEEEC---
T ss_pred eeeccCCCCCeEEEEe----CCCE-----EEEEeCCCEEEEEECCC
Confidence 5788999999999998 4555 899999999 9996553
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=259.73 Aligned_cols=292 Identities=13% Similarity=0.136 Sum_probs=220.7
Q ss_pred ccccceEEEEEccC---CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|.+.|++++|+|+ |++||+|+.||.|+|||+.+... .....+.+|.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~----- 86 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT----- 86 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS-----
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc-----
Confidence 68999999999999 69999999999999999987322 1336678898
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++|+ |++++|++++.||.|++||+.+++....
T Consensus 87 -------~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------------------------- 123 (368)
T 3mmy_A 87 -------GPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQI---------------------------------- 123 (368)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------CCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCceee----------------------------------
Confidence 899999998 7899999999999999999998764432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEe--cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...|.+++| +|++.+|+++ .|+.|++||++.. +.... +
T Consensus 124 ----------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~-------~ 167 (368)
T 3mmy_A 124 ----------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMV-------L 167 (368)
T ss_dssp ----------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEE-------E
T ss_pred ----------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEE-------E
Confidence 468889999999 8999999998 9999999999844 44433 2
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE--
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-- 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-- 341 (501)
..+ ..+.++.+.+ ..+++++.++.+++||++...... ..... .+...+..+.+.++...
T Consensus 168 ~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 168 QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF---RRIES------------PLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE---EECCC------------SCSSCEEEEEEEECTTSCE
T ss_pred ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchh---hhccc------------cccCCCceEEEcccCCCCC
Confidence 223 3556666654 568888999999999998764321 11111 12245666777666554
Q ss_pred --EEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 342 --LLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 342 --l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++++ ++.|++||++... ..+..+.+|...........+. ..+++++|+|++++|++|+.||.|++||+.++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI---YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE---CCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc---cceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 77765 6999999998521 4566777776521100000000 01279999999999999999999999999987
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.....+..|..++.+++|+| ++++ |++++.++. +.|
T Consensus 306 -~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 306 -TKLKTSEQLDQPISACCFNH--NGNI-----FAYASSYDWSKGH 342 (368)
T ss_dssp -EEEEECCCCSSCEEEEEECT--TSSC-----EEEEECCCSTTCG
T ss_pred -cEEEEecCCCCCceEEEECC--CCCe-----EEEEecccccccc
Confidence 44588899999999999999 7787 999988876 444
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-32 Score=264.08 Aligned_cols=248 Identities=19% Similarity=0.285 Sum_probs=204.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++|+|+|+|++||+|+.||+|+|||+.+++ .+..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~-------- 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------- 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence 578899999999999999999999999999998765 347788998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. +..|++++.|+.+++||........
T Consensus 190 ----~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~-------------------------------------- 223 (420)
T 4gga_A 190 ----ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV-------------------------------------- 223 (420)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE--------------------------------------
T ss_pred ----CceEEEeeC----CCEEEEEeCCCceeEeeecccceee--------------------------------------
Confidence 889998874 5799999999999999987643211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+ .+|...+..+.|+|++++++++ .|+.+++|+.......... ......|..
T Consensus 224 ---------------------~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~ 277 (420)
T 4gga_A 224 ---------------------ATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 277 (420)
T ss_dssp ---------------------EEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSS
T ss_pred ---------------------EEe-cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCC
Confidence 111 6889999999999999999999 9999999999854322111 012467889
Q ss_pred ceEEEEEecCCCcEEEEE--eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.|.+++|+|.+..+++++ +.|+.|++||+.++... ..+.. ...+.++.|+|+++.+++++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEE
Confidence 999999999886777765 47999999999988654 33333 35789999999999888653
Q ss_pred ---CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 347 ---~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
|+.|+|||+.+ ++++.++.+|...+ ++++|+|||++|++|+.|++|+|||+.+...
T Consensus 340 g~~d~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 340 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred ecCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 59999999986 89999999998876 8999999999999999999999999976533
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-32 Score=260.81 Aligned_cols=253 Identities=12% Similarity=0.127 Sum_probs=200.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|++++|++|+.||.|++||+.+++. .....+.+|.
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~-------- 96 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN-------- 96 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------eeeEEeecCC--------
Confidence 5899999999999999999999999999999987642 2334456777
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++++|++++.|+.|++||+..+.....
T Consensus 97 ----~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~------------------------------------- 133 (372)
T 1k8k_C 97 ----RAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWV------------------------------------- 133 (372)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------------
T ss_pred ----CceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCccee-------------------------------------
Confidence 889999998 7899999999999999999987652111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC-----------------CCe
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQ 251 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~-----------------~~~ 251 (501)
...+...|...|.+++|+|++++|+++ .|+.|++||++. .+.
T Consensus 134 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 134 --------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp --------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred --------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 111125788999999999999999999 999999999641 223
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.... +..|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. |...|.
T Consensus 194 ~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~ 248 (372)
T 1k8k_C 194 LMFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLAS-------------ETLPLL 248 (372)
T ss_dssp EEEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEEC-------------SSCCEE
T ss_pred heEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EEEcc-------------CCCCeE
Confidence 3332 56789999999999999 99999999999999999887543 33333 567899
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeCC-CC--ce------------------------------------eEe-eccccc
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRMD-ST--PV------------------------------------ATF-KIHEHL 371 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~~-~~--~~------------------------------------~~~-~~~~~~ 371 (501)
+++|+|++++|+++.++.|++|++... ++ .+ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999999998899999999741 11 11 111 133332
Q ss_pred cccccccCCCCCcceeeEEEEc-CCC---cEEEEEeCCCeEEEEecCCCCc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
|++++|. ++| ++|++|+.||.|++|++.+++.
T Consensus 329 ---------------v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 329 ---------------VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ---------------EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ---------------cceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 3789866 676 9999999999999999987643
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=276.04 Aligned_cols=298 Identities=10% Similarity=0.037 Sum_probs=206.2
Q ss_pred ccccceEEEEEccC------CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc
Q 010801 30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~~------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (501)
.|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++... .. . .....+...+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~--~~---~-----------~~~~~p~~~l~~h~-- 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV--HV---F-----------KMCEKPSLTLSLAD-- 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS--SE---E-----------ECCCSCSEEECCTT--
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc--cc---c-----------eeecCceEEEEcCC--
Confidence 35788999999997 5799999999999999998764310 00 0 00011234678888
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..|++++|+ ++ ..|++|+.||+|++||+.++....
T Consensus 267 ----------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~~~-------------------------------- 301 (524)
T 2j04_B 267 ----------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEVPS-------------------------------- 301 (524)
T ss_dssp ----------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSSCS--------------------------------
T ss_pred ----------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCCce--------------------------------
Confidence 889999997 33 589999999999999998653110
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEE--EecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.. +.+|...|.++ +|+|++ .+|++| .|++|+|||++. .+....
T Consensus 302 ---------------------------~~-~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~---- 348 (524)
T 2j04_B 302 ---------------------------FY-DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKT---- 348 (524)
T ss_dssp ---------------------------EE-EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCE----
T ss_pred ---------------------------EE-eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccc----
Confidence 01 15899999999 578887 899998 999999999983 333322
Q ss_pred CCCCCCcc--cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 260 PSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 260 ~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+.+|. ..|.+++|+|++ +.|++++.|++|++||++++... ..+ .+|...|++++|+|
T Consensus 349 ---~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l-------------~gH~~~V~sva~Sp 407 (524)
T 2j04_B 349 ---TVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPL-------------VSRETTITAIGVSR 407 (524)
T ss_dssp ---EEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEE-------------EECSSCEEEEECCS
T ss_pred ---cccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eee-------------ecCCCceEEEEeCC
Confidence 23343 247899999998 89999999999999999886432 222 45788999999999
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|++|++|+ |++|++||+.. +.+.......... ....+++++|+|+++.+. ... .+.+|+....
T Consensus 408 ~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~ 472 (524)
T 2j04_B 408 LHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVN 472 (524)
T ss_dssp SCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC--CCCCCC----
T ss_pred CCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC--CceecccccC
Confidence 999999986 59999999863 3333222111000 000125899999998552 222 2334444311
Q ss_pred CcceEEEecccCcccceeeccCCc-cccCccceeeeecccce-eeccccC
Q 010801 417 SAGGITVEAGKNENRKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.....++.+|..+|.+++|+|..+ +.. +|+|+.++. +||....
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKC-----YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTE-----EEEECTTSEEEEEECSC
T ss_pred CcceeeecCCCceEEEEECCCCCCccHH-----HHhhccCceEEEEEccc
Confidence 234578999999999999999643 456 999999999 9996553
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=262.52 Aligned_cols=311 Identities=15% Similarity=0.217 Sum_probs=217.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+.+|. +.|++++|+ | ++++|++++.||.|++||+.++..........
T Consensus 37 ~~~~~h~------------~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------- 86 (408)
T 4a11_B 37 DVERIHG------------GGINTLDIE--PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------- 86 (408)
T ss_dssp EECCCCS------------SCEEEEEEC--TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------------
T ss_pred eeeeccC------------CcEEEEEEe--cCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------------
Confidence 5677898 999999998 7 89999999999999999998875433211000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCe
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
. .........+|...|.+++|+| ++.+|+++ .|+.|++||+. ..+
T Consensus 87 ------------------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~ 133 (408)
T 4a11_B 87 ------------------------V--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TLQ 133 (408)
T ss_dssp ------------------------E--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-TTE
T ss_pred ------------------------c--------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CCc
Confidence 0 0000000146899999999999 77789998 99999999999 444
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCC--cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
....+ .+...+.++.++|.+. .++++++.||.|++||+++++.. ..+. +|...
T Consensus 134 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~~ 188 (408)
T 4a11_B 134 TADVF--------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQ-------------GHRQE 188 (408)
T ss_dssp EEEEE--------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEEC-------------CCCSC
T ss_pred cceec--------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeec-------------CCCCc
Confidence 44432 2567789999998541 49999999999999999887543 3333 36789
Q ss_pred eeEEEEeeCCCE-EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 330 ISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 330 i~~~~~sp~~~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
|.+++|+|++++ |++++ ++.|++||++.....+..+..+..................+++++|+|++++|++++.||.
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 999999999984 77775 5999999998644456665433221110000000001112379999999999999999999
Q ss_pred EEEEecCCCCcceEEEeccc----CcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEE
Q 010801 408 LRIFSHGVGSAGGITVEAGK----NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLA 480 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~ 480 (501)
|++||+.+++.. ..+..+. ........... .... ++.++.++. .+|+. .+......+|...|++++
T Consensus 269 i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 269 MRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCG-CSSE-----FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCS-SSSC-----EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCccc-eeccccccccccccceeEEecC-CCce-----EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 999999987543 2221111 11111222221 2222 677777888 99943 345556678999999999
Q ss_pred EccCCCEEEEeeCCe-EEEEe
Q 010801 481 WHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 481 ~sp~~~~la~~~~~~-~~i~~ 500 (501)
|+|++++|++++.|+ +++|+
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEe
Confidence 999999999999554 99997
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.2e-32 Score=260.60 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=217.3
Q ss_pred ceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....++++|+...+ ++|+.||.|+||++...... ......+.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~----------- 81 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT----------- 81 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence 45568898877544 45788999999998653210 11234578898
Q ss_pred ccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 113 ~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|++++|+ | ++.+|++++.||+|++||+.++......
T Consensus 82 -~~V~~~~~~--p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-------------------------------------- 120 (402)
T 2aq5_A 82 -APVLDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPL-------------------------------------- 120 (402)
T ss_dssp -SCEEEEEEC--TTCTTEEEEEETTSEEEEEECCTTCCSSCB--------------------------------------
T ss_pred -CCEEEEEeC--CCCCCEEEEEeCCCeEEEEEccCCCCcccc--------------------------------------
Confidence 899999998 6 8899999999999999999876422110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.++...+ .+|...|.+++|+|++ .+|++| .|+.|++||++. ++....+ ....|...
T Consensus 121 ---------------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~ 178 (402)
T 2aq5_A 121 ---------------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTL-----GPDVHPDT 178 (402)
T ss_dssp ---------------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEE-----CTTTCCSC
T ss_pred ---------------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEE-----ecCCCCCc
Confidence 0122223 6899999999999998 688998 999999999994 4444431 01679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc-eeEEEEeeCCCEEEEE---
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSR--- 345 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~sp~~~~l~~~--- 345 (501)
|.+++|+|++ ++|++++.||.|++||+++++.. ..+. .+|... +..+.|+|++++|++|
T Consensus 179 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 179 IYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD------------RPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp EEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE------------CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred eEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec------------cCCCCCcceEEEEcCCCcEEEEeccC
Confidence 9999999998 99999999999999999987543 2331 123343 8999999999999998
Q ss_pred -cCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCCCeEEEEecCCCCcceEE
Q 010801 346 -DYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 -~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
.++.|++||++....++.... .+...+ ..++|+|++++|+ +|+.||.|++||+.+++.....
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred CCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 359999999986333344433 233322 6899999999986 4557999999999988653455
Q ss_pred Eecc--cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 423 VEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 423 ~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+..+ ..++.+++|+| ++.+ ++++ ++. ++|...
T Consensus 307 l~~~~~~~~v~~~~~sp--~~~~-----~~s~--~~~~~~~~l~ 341 (402)
T 2aq5_A 307 LSMFSSKESQRGMGYMP--KRGL-----EVNK--CEIARFYKLH 341 (402)
T ss_dssp EEEECCSSCCSEEEECC--GGGS-----CGGG--TEEEEEEEEE
T ss_pred ecccccCCcccceEEec--cccc-----ceec--ceeEEEEEcC
Confidence 5554 58999999998 6666 5543 345 888443
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-31 Score=260.26 Aligned_cols=294 Identities=12% Similarity=0.188 Sum_probs=231.6
Q ss_pred eEeeeccCCcchhhccccccccc-eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~-V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
....+++|. .. +.++.+ ++++|++|+.||+|++||+.+++.....
T Consensus 113 ~~~~l~~h~------------~~v~~~~~~----~~~~l~sgs~dg~i~vwd~~~~~~~~~~------------------ 158 (464)
T 3v7d_B 113 QRTTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQL------------------ 158 (464)
T ss_dssp EEEEEECCS------------SSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEE------------------
T ss_pred ceEEEcCCC------------CCcEEEEEE----CCCEEEEEcCCCcEEEEECCCCcEEEEE------------------
Confidence 345788898 55 466666 3579999999999999999887754432
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
.+|...|.+++|+|++ .+++| .|++|++||++ .+
T Consensus 159 -------------------------------------------~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~-~~ 193 (464)
T 3v7d_B 159 -------------------------------------------SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KG 193 (464)
T ss_dssp -------------------------------------------CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT-TT
T ss_pred -------------------------------------------eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC-CC
Confidence 6899999999999988 88888 99999999999 44
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEEccCCccccccc------ceeecccccCCCcce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDMRQSALCDHSA------RILRDAAESHGSKSF 322 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~ 322 (501)
+.... +.+|...|.+++|+ +++ ++|++++.||.|++||++++....... ..+......+.....
T Consensus 194 ~~~~~-------~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 194 CCTHV-------FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEEE-------ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred cEEEE-------ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 45443 67899999999999 466 899999999999999998865331100 000000111112234
Q ss_pred eeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
+.+|...+.++ +++++++++++ |+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCIS 327 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEE
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCE---------------EEEEEcCCCCEEEE
Confidence 56777788776 67899999886 59999999986 88888898887765 79999999999999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc-cccccCCCeEEE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-LSYNLSSKLLHL 479 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~-~~~~~~~~i~~~ 479 (501)
|+.||.|++||+.++ .....+.+|...+.++.+++ .+ +++++.|+. .+|+...... ....+...+..+
T Consensus 328 g~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~----~~-----l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 397 (464)
T 3v7d_B 328 ASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD----KF-----LVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397 (464)
T ss_dssp EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEECTTCCCEE
T ss_pred EeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEcC----CE-----EEEEeCCCcEEEEECCCCceeeeecCCCCccEE
Confidence 999999999999988 45588999999999999864 44 899999999 9996654322 223466678889
Q ss_pred EEccCCCEEEEeeCCeEEEEeC
Q 010801 480 AWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~~ 501 (501)
+|+|++++|++++++.+++|+.
T Consensus 398 ~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 398 TFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp EEEECSSEEEEEETTEEEEEET
T ss_pred EEEeCCCEEEEecCCeEEEEEC
Confidence 9999999999999999999973
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-32 Score=259.70 Aligned_cols=290 Identities=9% Similarity=0.067 Sum_probs=210.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCC-------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d-------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
-+|++++|+ |++++|++|+.| +.|++|++..+........
T Consensus 15 ~PV~sv~fs--~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------------------- 61 (365)
T 4h5i_A 15 YPAYGAKFL--NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------------------- 61 (365)
T ss_dssp SCEEEEEEE--ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE-------------------------------
T ss_pred CCEEEEEEe--CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee-------------------------------
Confidence 579999998 789999998754 3599999876532111000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE------------cCCeEEEEECCCCCeeee
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~ 254 (501)
.......+.+|...|.+++++ +..+++| .|+.+++|++........
T Consensus 62 --------------------~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 62 --------------------HILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp --------------------EEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred --------------------eeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 000001125777788777664 4456554 367899999875544333
Q ss_pred eeecC-CCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 255 IVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 255 ~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..... ......+...+.+++|+||| +++++++ .|++|++||+.+++.. ..+ .|...|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~----~~~--------------~~~~~V~ 180 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEK----FEI--------------ETRGEVK 180 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEE----EEE--------------ECSSCCC
T ss_pred EeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEE----EEe--------------CCCCceE
Confidence 22211 11234456678999999999 8876554 6899999999987543 222 2457899
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeE--eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--- 406 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--- 406 (501)
+++|+|||++|++++++.+++|+..+ ++.+.. ...|...+ .+++|+|+++++++++.|+
T Consensus 181 ~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v---------------~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSL---------------SKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEECTTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEE---------------EEEEEEETTEEEEEEEESSSCC
T ss_pred EEEEccCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCE---------------EEEEEcCCCCEEEEEecCCcce
Confidence 99999999999999888888888775 554433 23344433 7899999999999999887
Q ss_pred -eEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc-ccccCCCeEE
Q 010801 407 -LLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL-SYNLSSKLLH 478 (501)
Q Consensus 407 -~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~-~~~~~~~i~~ 478 (501)
.+++|++...... ...+.+|..+|.+++|+| ++++ ||+|+.|+. ++|+.. +.+.. ..+|...|++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp--dg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM--KGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT--TSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECC--CCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 6889998765432 356788999999999999 8888 999999999 999654 33333 4579999999
Q ss_pred EEEccCCCEEEEeeC-CeEEEEe
Q 010801 479 LAWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~~-~~~~i~~ 500 (501)
++|||||++||+++. +.++||.
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999995 5599996
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-31 Score=251.28 Aligned_cols=268 Identities=9% Similarity=0.033 Sum_probs=213.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++++|+ |++.+|++++.|+.|++|++.++....
T Consensus 12 ~~v~~~~~s--~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------------ 47 (342)
T 1yfq_A 12 DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------------ 47 (342)
T ss_dssp SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------------
T ss_pred CcEEEEEEc--CCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------------
Confidence 899999998 688999999999999999998765111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEEC-CCCCeeeeeeecCCCCCCC--ccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTE 268 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~ 268 (501)
..... .+|...|.+++|+|+++ +|++| .|+.|++||+ . .+.... +.+ |..
T Consensus 48 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~--------~~~~~~~~ 102 (342)
T 1yfq_A 48 ---------------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-SPSFQA--------LTNNEANL 102 (342)
T ss_dssp ---------------EEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-SSSEEE--------CBSCCCCS
T ss_pred ---------------cceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-CCceEe--------ccccCCCC
Confidence 01111 47888999999999999 99998 9999999999 7 333322 566 999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccC---------CcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.|.+++|+| + ++|++++.|+.|++||+++ ++.. ..+ . |...+.+++|+|++
T Consensus 103 ~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~-------------~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 103 GICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNT-------------K-VKNKIFTMDTNSSR 162 (342)
T ss_dssp CEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSS-------------S-SCCCEEEEEECSSE
T ss_pred ceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEE-------------e-eCCceEEEEecCCc
Confidence 999999999 7 9999999999999999986 3221 111 1 46789999999988
Q ss_pred CEEEEE-cCCcEEEEEeeC-CCCcee-EeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCC
Q 010801 340 QHLLSR-DYMNLKLWDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++++ .++.|++||++. ...... ....+...+ .+++|+| +++++++++.||.|++|+++.
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i---------------~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI---------------RDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE---------------EEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCce---------------eEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 5555 569999999975 223222 223333333 7899999 999999999999999999987
Q ss_pred C-----CcceEEEecccC---------cccceeeccCCccccCccceeeeecccce-eecccc--CCccccccc-CCCeE
Q 010801 416 G-----SAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNL-SSKLL 477 (501)
Q Consensus 416 ~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~-~~~i~ 477 (501)
. ......+..|.. .+.+++++| ++++ |++++.++. .+|+.. +.......| ...|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 298 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCce
Confidence 6 355688888866 999999998 6777 999999999 999544 445556677 89999
Q ss_pred EEEEccCCCEEEEeeCCeE
Q 010801 478 HLAWHPTTNLIACANGNSL 496 (501)
Q Consensus 478 ~~~~sp~~~~la~~~~~~~ 496 (501)
+++ |++++|++++.|+.
T Consensus 299 ~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 299 KIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEE--ECSSEEEEEEECTH
T ss_pred Eec--CCCCeEEEEecCCc
Confidence 999 99999999996653
No 96
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.2e-32 Score=258.59 Aligned_cols=261 Identities=13% Similarity=0.153 Sum_probs=170.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+++.+|++++.|++|+|||..++......
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------------------------------------------- 127 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQH--------------------------------------------------- 127 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEE---------------------------------------------------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceee---------------------------------------------------
Confidence 45678999999999999999887644321
Q ss_pred eeeeeeEeecCCcccceEEEEecC--------CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE
Q 010801 205 VHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
.+.. +.+|.+.|++++|+| |+++|++| .|++|+|||+........ +..|...|.+++|
T Consensus 128 ----~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~ 194 (393)
T 4gq1_A 128 ----VLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQF 194 (393)
T ss_dssp ----EECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEE
T ss_pred ----eecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEE
Confidence 1111 279999999999998 78999999 999999999985544443 4568889999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceee--------cccccCCCcceeeecccceeEEEEe-eCCCEEEEEc
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--------DAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD 346 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~i~~~~~s-p~~~~l~~~~ 346 (501)
+|++.++|++++.||.|++||+++++.......... .............+|...+.++.|+ ||++.|++++
T Consensus 195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence 999745899999999999999998754321111000 0000011111235788899999997 7999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccc------cCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCC
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD------LYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
|+.+++||+.. ++....+..+...+..... ....... ....|+| ++.++++|+.||.|+|||+.++.
T Consensus 275 ~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 275 KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp TTSEEEEEEC--------------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 59999999986 6555555544433211100 0000111 2344444 45577888899999999998774
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 497 (501)
.. .. ...|..+|++++|||||++||+++++++.
T Consensus 351 ~~-~~----------------------------------------------~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 351 SN-SI----------------------------------------------PIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CC-EE----------------------------------------------EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EE-EE----------------------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 33 11 12344588999999999999999999998
Q ss_pred EEe
Q 010801 498 FHY 500 (501)
Q Consensus 498 i~~ 500 (501)
+|.
T Consensus 384 lvr 386 (393)
T 4gq1_A 384 LTR 386 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-31 Score=251.58 Aligned_cols=299 Identities=16% Similarity=0.125 Sum_probs=203.4
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++++.||.|++||+.++....
T Consensus 5 ~~~~gH~------------~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------- 47 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNW----------------------- 47 (351)
T ss_dssp CEECCCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred ccCcccc------------cceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence 4467898 999999998 789999999999999999998653211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+....+ .+|...|.+++|+| ++++|++| .|+.|++||++...
T Consensus 48 ---------------------------------~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 48 ---------------------------------ELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp ---------------------------------EEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred ---------------------------------eeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 112222 68999999999999 69999999 99999999998542
Q ss_pred -------eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc
Q 010801 251 -------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 251 -------~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
.... .+..|...|.+++|+|+ + ++|++++.||.|++||+++++... .+...........
T Consensus 94 ~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 94 ECSGRRWNKLC-------TLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSI 161 (351)
T ss_dssp TTSSCSEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSC
T ss_pred cccccCcceee-------eecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----ccccccccccccc
Confidence 2222 25679999999999999 8 999999999999999999876542 2221011111111
Q ss_pred eeeecccceeEEEEeeC---CCEEEEEc-CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 322 FFTEIIASISDIKFAND---GQHLLSRD-YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 322 ~~~~h~~~i~~~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
...+|...+.+++|+|+ +.++++++ ++.+.+|+... ++. +..+.+|...+ ++++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~ 225 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPS 225 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCC
Confidence 12356788999999997 88888886 47776666653 443 55666776654 79999999
Q ss_pred C----cEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc----e-eeccc--cC
Q 010801 396 G----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----A-HENSS--SG 464 (501)
Q Consensus 396 ~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~iw~~--~~ 464 (501)
+ ++|++|+.||.|++||+.++... .....+..........+ .... ++.+..++ . .+|.. ..
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------------CCSEEEE
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCc--cccc-----ccccccccccceeeeeccccccc
Confidence 8 89999999999999999876333 22222222222222222 1111 22222222 2 33311 12
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
......+|...|++++|+|++++|++++.|+ +++|+
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3444567889999999999999999999655 99996
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-31 Score=251.71 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=171.6
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
....+++|. +.|++++|+ +++++|++++.||.|++|++..+...
T Consensus 3 ~~~~~~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~---------------------- 46 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHK---------------------- 46 (379)
T ss_dssp --CCEEECC------------CCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEE----------------------
T ss_pred ccEEecCCc------------ccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcce----------------------
Confidence 346788999 999999998 78999999999999999999743311
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~ 249 (501)
....+ .+|...|++++|+++ +++|++| .|+.|++||+...
T Consensus 47 ------------------------------------~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 47 ------------------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp ------------------------------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred ------------------------------------eeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 12222 689999999999977 8999999 9999999999944
Q ss_pred Ce-eeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec
Q 010801 250 DQ-CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 250 ~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
.. ... .+..|...|.+++|+|+ + .+|++++.||.|++||+++.... ... .+.+|
T Consensus 90 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~-----------~~~~~ 146 (379)
T 3jrp_A 90 RWSQIA-------VHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SPI-----------IIDAH 146 (379)
T ss_dssp EEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC----CEE-----------EEECC
T ss_pred ceeEee-------eecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce----eeE-----------EecCC
Confidence 31 222 25678899999999999 8 99999999999999999876432 111 12346
Q ss_pred ccceeEEEEee-------------CCCEEEEEc-CCcEEEEEeeCCCC---ceeEeeccccccccccccCCCCCcceeeE
Q 010801 327 IASISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 327 ~~~i~~~~~sp-------------~~~~l~~~~-~~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
...|.+++|+| ++.+|++++ |+.|++||++.... ....+.+|...+ ++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~ 211 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RD 211 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eE
Confidence 78999999999 689999886 59999999986322 334566676654 79
Q ss_pred EEEcCC---CcEEEEEeCCCeEEEEecCCCC
Q 010801 390 CSVSGD---GLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 390 ~~~s~~---~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
++|+|+ +++|++++.||.|++||+.++.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 999999 8999999999999999998763
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-31 Score=257.06 Aligned_cols=266 Identities=16% Similarity=0.246 Sum_probs=203.6
Q ss_pred ccccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|.+.|++++|+|+ +.+||+|+.||.|+||++.+.... ............+.+|.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-----------------~~~~~~~~~~~~~~~h~----- 181 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-----------------PEPSGECQPDLRLRGHQ----- 181 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-----------------CCTTCCCCCSEEEECCS-----
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-----------------cCccccCCCcEEecCCC-----
Confidence 4569999999999997 789999999999999999863221 00011234556788898
Q ss_pred ccccccccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ +++. +|++++.||.|++|++..+......
T Consensus 182 -------~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------- 220 (430)
T 2xyi_A 182 -------KEGYGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHRV-------------------------------- 220 (430)
T ss_dssp -------SCCCCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGGE--------------------------------
T ss_pred -------CCeEEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCce--------------------------------
Confidence 889999998 6666 9999999999999999874311000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCC--eeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~ 261 (501)
......+ .+|...|.+++|+| ++.+|+++ .|+.|++||++... .....
T Consensus 221 ---------------------~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~------ 272 (430)
T 2xyi_A 221 ---------------------IDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT------ 272 (430)
T ss_dssp ---------------------EECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE------
T ss_pred ---------------------eccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE------
Confidence 0111222 68899999999999 67788888 99999999999542 22222
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ- 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~- 340 (501)
+..|...|++++|+|++..+|++++.||.|++||+++.... ...+ .+|...|.+++|+|+++
T Consensus 273 -~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~-------------~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 273 -VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSF-------------ESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp -EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEE-------------ECCSSCEEEEEECSSCTT
T ss_pred -eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEe-------------ecCCCCEEEEEECCCCCC
Confidence 45788999999999998458999999999999999874321 1333 34678999999999996
Q ss_pred EEEEEc-CCcEEEEEeeCCC-------------CceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCC
Q 010801 341 HLLSRD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS 405 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~d 405 (501)
+|++++ |+.|++||+...+ +.+..+.+|...+ ++++|+|+++ +|++++.|
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETT
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECC
Confidence 567764 6999999997522 4455555666544 7999999999 89999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
|.|+||++...
T Consensus 401 g~i~iw~~~~~ 411 (430)
T 2xyi_A 401 NIMQVWQMAEN 411 (430)
T ss_dssp SEEEEEEECHH
T ss_pred CCEEEeEcccc
Confidence 99999999753
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-32 Score=258.62 Aligned_cols=210 Identities=12% Similarity=0.139 Sum_probs=160.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||+|+|||+.+++. ......+.+|.
T Consensus 52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------~~~~~~~~~~~------- 100 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------WKQTLVLLRLN------- 100 (377)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------CCCEEECCCCS-------
T ss_pred ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------eeeeeEecccC-------
Confidence 36899999999999999999999999999999987751 12345677888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++...
T Consensus 101 -----~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------- 136 (377)
T 3dwl_C 101 -----RAATFVRWS--PNEDKFAVGSGARVISVCYFEQENDWW------------------------------------- 136 (377)
T ss_dssp -----SCEEEEECC--TTSSCCEEEESSSCEEECCC-----CC-------------------------------------
T ss_pred -----CceEEEEEC--CCCCEEEEEecCCeEEEEEECCcccce-------------------------------------
Confidence 889999998 789999999999999999998765210
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCC-cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC----------------
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---------------- 250 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~---------------- 250 (501)
+.+.+ .. |...|.+++|+|++++|+++ .|+.|++||+....
T Consensus 137 --------------------~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T 3dwl_C 137 --------------------VSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195 (377)
T ss_dssp --------------------CCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred --------------------eeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence 11112 34 89999999999999999999 99999999986221
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.... .+ +|...|.+++|+|++ ++|++++.||.|++||+++++........ +.+|...
T Consensus 196 ~~~~~-------~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~ 253 (377)
T 3dwl_C 196 NTVCA-------EY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALIT-------------VKLSQLP 253 (377)
T ss_dssp EEEEE-------CC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCC-------------EECSSSC
T ss_pred hhhhh-------cc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEe-------------ecCCCCc
Confidence 1111 24 789999999999999 99999999999999999987542111122 3446789
Q ss_pred eeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 330 ISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
|.+++|+|++++|++++++.+.+|+..
T Consensus 254 v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 254 LRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 999999999999999988677788775
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.2e-31 Score=253.89 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=191.4
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|.+++|+| ++++|++|+.||.|++||+.+... .......+|.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~------- 163 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD------- 163 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence 5899999999999 789999999999999999885421 1222233445
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++.+|++++.|+.|++||+. ++....
T Consensus 164 -----~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~------------------------------------ 199 (383)
T 3ei3_B 164 -----YWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFK------------------------------------ 199 (383)
T ss_dssp -----CCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEE------------------------------------
T ss_pred -----CCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEE------------------------------------
Confidence 779999998 789999999999999999984 332221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCC---CeeeeeeecCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNM 263 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~ 263 (501)
+ .+|...|.+++|+|+++ ++++| .|+.|++||++.. ......
T Consensus 200 ------------------------~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------- 246 (383)
T 3ei3_B 200 ------------------------E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------- 246 (383)
T ss_dssp ------------------------E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------
T ss_pred ------------------------e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------
Confidence 1 57889999999999999 88998 9999999999852 233332
Q ss_pred CCcccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCC----CcceeeecccceeEEEEeeC
Q 010801 264 DDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 264 ~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~i~~~~~sp~ 338 (501)
.+|...|.+++|+| ++ ++|++++.|+.|++||+++++.. ..+..|..... .....-.....+..++|+|+
T Consensus 247 ~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCC
Confidence 25889999999999 98 99999999999999999987654 33333211100 00000001234555777777
Q ss_pred CCEEEEE-cCCcEEEEEeeCCCCceeEeeccc--cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+++ ++ .|+.|++||+.+ ++.+..+.++. ..+ ..++|+|++++|++|+ ||.|+|||+++
T Consensus 322 g~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 322 DQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 777 44 469999999986 88888888743 322 4679999999999997 99999999874
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-31 Score=255.49 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=172.8
Q ss_pred cceeEEEEeecCCCCEE-EEeeCCCeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|++++|+ |++++| ++++.|+.|++||+. +++......
T Consensus 103 ~~v~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRLT--SDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEEc--CCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 679999998 788886 888899999999998 665433220
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
. ..|...|.+++|+|++++|++| .++.|++|++......... ...+.+|...
T Consensus 145 ---------------------~--~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~ 197 (450)
T 2vdu_B 145 ---------------------R--FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSM 197 (450)
T ss_dssp ---------------------E--EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSC
T ss_pred ---------------------c--ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc----ceeeecccCc
Confidence 0 2567889999999999999999 9999999999844322100 0135678999
Q ss_pred eEEEEEecC---CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 270 ITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 270 v~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
|.+++|+|+ + ++|++++.|+.|++||+++++.. ..+ +.+|...|.+++|+ ++++|++++
T Consensus 198 v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~~------------~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 198 LTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DKW------------LFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp EEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EEE------------CCCCSSCEEEEEEC-STTEEEEEE
T ss_pred eEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----eee------------ecCCCCceEEEEEC-CCCEEEEEe
Confidence 999999999 8 99999999999999999877533 221 13467899999999 999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeecccccccccccc----------CCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEec-
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH- 413 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~- 413 (501)
|+.|++||+++ ++.+..+..+.......... .....-..+.+++|+|++++|++++ .|+.|+||++
T Consensus 260 ~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 260 GDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp SSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred CCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 59999999986 78787776443110000000 0001112347899999999999999 8999999999
Q ss_pred -CCCC--cceEEEecccCcccceeecc
Q 010801 414 -GVGS--AGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 414 -~~~~--~~~~~~~~~~~~v~~~~~~~ 437 (501)
.++. .....+..| ..+.+++++|
T Consensus 339 ~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 339 EKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp SSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred cCCCCceeeccEeccC-CceEEEEecC
Confidence 4332 122334444 4444555544
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=264.80 Aligned_cols=283 Identities=12% Similarity=0.183 Sum_probs=210.3
Q ss_pred eEeee-ccCCcchhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 93 YKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 93 ~~~~~-~~h~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.+..+ ++|. +.|++++|+ | ++.+|++|+.||+|++||+.+......
T Consensus 54 ~~~~~~~~h~------------~~V~~~~~s--~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------ 101 (437)
T 3gre_A 54 LIATLMENEP------------NSITSSAVS--PGETPYLITGSDQGVIKIWNLKEIIVGEV------------------ 101 (437)
T ss_dssp EEEEECTTTT------------SCEEEEEEE--CSSSCEEEEEETTSEEEEEEHHHHHTTCC------------------
T ss_pred EEeeeccCCC------------CceEEEEEC--CCCCCEEEEecCCceEEEeECcccccCcc------------------
Confidence 45667 8898 899999998 7 889999999999999999876321000
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC-
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI- 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~- 248 (501)
.++... ..|...|.+++|+|++++|++| .|+.|++||++.
T Consensus 102 ------------------------------------~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 102 ------------------------------------YSSSLT--YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp ------------------------------------CSCSEE--EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred ------------------------------------cceeee--ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence 001111 2688999999999999999999 999999999951
Q ss_pred -CCeeeeeeecC---CCCCCC--cccceEEEE--EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 249 -SDQCFNIVDMK---PSNMDD--LTEVITSAE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 249 -~~~~~~~~~~~---~~~~~~--~~~~v~~v~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
.++........ ...+.. +...+.++. +++++ .+|++++.||.|++||+++++.. ..+..
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-------- 210 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-------- 210 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC--------
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc--------
Confidence 22222211000 001112 556677777 55788 99999999999999999987543 33333
Q ss_pred ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEc----C
Q 010801 321 SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----G 394 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~ 394 (501)
..|...|.+++|+|++++|++|+ |+.|++||+++ ++++..+. .|...+ ++++|+ |
T Consensus 211 ---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~ 271 (437)
T 3gre_A 211 ---SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGK 271 (437)
T ss_dssp ---CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCT
T ss_pred ---CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCC
Confidence 11568999999999999999986 59999999986 78777775 454443 688555 5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCccccc--cc
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY--NL 472 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~--~~ 472 (501)
++++|++|+.||.|++||+.+++ ....+.+|...+..+.++|. ++. + ...... .|
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~ 328 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRS 328 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCS
T ss_pred CccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCCCCccceeccc--ccc-----c---------------ccceeccccc
Confidence 68899999999999999999884 45889999999998888883 332 1 001122 37
Q ss_pred CCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
...|++++|+ ++++|++++ ++.+++|+.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 7789999999 788899888 566999973
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=248.29 Aligned_cols=247 Identities=15% Similarity=0.120 Sum_probs=185.3
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
..+.+++++||+|+.||+|++||+.+++.. ..+. . ..|.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~ 80 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPR 80 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCce
Confidence 345568899999999999999999987642 2222 2 5688
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|+ |+ +++++.|++|++|+.... +.
T Consensus 81 ~~~~~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~ 107 (343)
T 3lrv_A 81 TGGEH--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------IT 107 (343)
T ss_dssp TTCCC--CS---EEEECSTTEEEEEETTTE------------------------------------------------EE
T ss_pred eeeeC--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eE
Confidence 88887 44 999999999999997653 22
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
+|+.... +.++.+..+|...|.+++|+| +++++++| .|++|++||++.. +..... ...+...+.+++
T Consensus 108 ~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~------~~~~~~~i~~~~ 177 (343)
T 3lrv_A 108 ILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-SQYIVH------SAKSDVEYSSGV 177 (343)
T ss_dssp EEETTTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-CEEEEE------CCCSSCCCCEEE
T ss_pred EeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEE------ecCCCCceEEEE
Confidence 4444432 223333357788999999999 99999998 9999999999944 444331 234566799999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
|+|++ .+|++|+.||.|++||+++++... ..+.. +|...|.+++|+|++.+|++++++.|++||
T Consensus 178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd 241 (343)
T 3lrv_A 178 LHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFD 241 (343)
T ss_dssp ECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred ECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence 99999 999999999999999999875321 11111 267899999999999999999888999999
Q ss_pred eeCCCCceeEeec---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCc
Q 010801 355 IRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA 418 (501)
Q Consensus 355 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~ 418 (501)
+++ .+.+..+.. +...+.. .+++|+|+|++|++++. |+.|+||++.....
T Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 242 LRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp TTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 986 555544443 2222100 25999999999999998 99999999976643
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.9e-32 Score=262.16 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=182.9
Q ss_pred ccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|.+.|++|+|+| ++++|++|+.||+|+|||++++.. ........+.
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~----- 209 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-------------------------RVFASSDTIN----- 209 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-------------------------EEEECCSSCS-----
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-------------------------eEEeccCCCC-----
Confidence 346999999999998 789999999999999999876532 1111122223
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ +++.+|++|+.||.|++||+.+.....
T Consensus 210 -------~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~~~~~~----------------------------------- 245 (435)
T 4e54_B 210 -------IWFCSLDVS--ASSRMVVTGDNVGNVILLNMDGKELWN----------------------------------- 245 (435)
T ss_dssp -------CCCCCEEEE--TTTTEEEEECSSSBEEEEESSSCBCCC-----------------------------------
T ss_pred -------ccEEEEEEC--CCCCEEEEEeCCCcEeeeccCcceeEE-----------------------------------
Confidence 567889998 789999999999999999986533111
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
+.+|...|.+++|+|++. ++++| .|+.|++||++........ ....
T Consensus 246 ---------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~ 293 (435)
T 4e54_B 246 ---------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSL 293 (435)
T ss_dssp ---------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCC
T ss_pred ---------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEee
Confidence 158899999999999886 66777 9999999999854332211 1246
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc----ceeeecccceeEEEEeeCCC
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK----SFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~~~~sp~~~ 340 (501)
+|...|++++|+|++ ++|++++.||.|++||+++++.. ..+..|....... .........+..+.+++++.
T Consensus 294 ~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 368 (435)
T 4e54_B 294 PHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 368 (435)
T ss_dssp BCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT
T ss_pred eccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCC
Confidence 799999999999999 99999999999999999987643 2222211110000 00000112233333444444
Q ss_pred EEEEE-cC-CcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEE-EEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 341 HLLSR-DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 341 ~l~~~-~~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.++++ .+ +.|++||..+ ++.+..+. +|...+ .++ +|+|+|++|++|+ |+.|+||+++++
T Consensus 369 ~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp SCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred eEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 33332 23 6799999986 77776654 444443 455 7999999999876 789999999987
Q ss_pred Cc
Q 010801 417 SA 418 (501)
Q Consensus 417 ~~ 418 (501)
+.
T Consensus 432 k~ 433 (435)
T 4e54_B 432 RT 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 43
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=247.20 Aligned_cols=279 Identities=14% Similarity=0.156 Sum_probs=213.2
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCC---CCEEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~---~~~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (501)
.+....+++|. +.|++++|+ |+ +++|++++.||.|++||+.+ +....
T Consensus 29 ~~~~~~~~~h~------------~~v~~~~~~--~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------- 79 (368)
T 3mmy_A 29 MKDIEVTSSPD------------DSIGCLSFS--PPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--------------- 79 (368)
T ss_dssp TCCEECSSCCS------------SCEEEEEEC--CTTSSSEEEEEEETTSEEEEEEECTTSCEEE---------------
T ss_pred cceeEeccCCC------------CceEEEEEc--CCCCCceEEEEECCCCcEEEEEcCCCCceeE---------------
Confidence 34556788998 999999998 56 68999999999999999987 33221
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd 245 (501)
..+ .+|...|.+++|+|++++|+++ .|+.|++||
T Consensus 80 --------------------------------------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 80 --------------------------------------------KAQ-QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp --------------------------------------------EEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred --------------------------------------------EEe-ccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 111 5789999999999999999999 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
++ .++... +..|...|.+++| +|++ ++|++++.||.|++||+++++.. ..+..
T Consensus 115 ~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~----------- 169 (368)
T 3mmy_A 115 LS-SNQAIQ--------IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQL----------- 169 (368)
T ss_dssp TT-TTEEEE--------EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEEC-----------
T ss_pred cC-CCCcee--------eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEec-----------
Confidence 99 444443 3468899999999 8888 99999999999999999987644 34443
Q ss_pred eecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE----
Q 010801 324 TEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH---- 398 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---- 398 (501)
...+.++.+.+ ..++++ .++.+++|+++................ ...+++.++...
T Consensus 170 ---~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 170 ---PERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQ--------------HRCVAIFKDKQNKPTG 230 (368)
T ss_dssp ---SSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSC--------------EEEEEEEECTTSCEEE
T ss_pred ---CCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCC--------------CceEEEcccCCCCCCe
Confidence 23455665554 455555 569999999985333333222211110 134555554433
Q ss_pred EEEEeCCCeEEEEecCCCC--cceEEEecccC------------cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 399 FATGSYSNLLRIFSHGVGS--AGGITVEAGKN------------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 399 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+++++.||.|++|++.... .....+..|.. ++.+++++| ++++ |++++.|+. .+|+..
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~-----l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGT-----LATVGSDGRFSFWDKD 303 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCC-----EEEEETTSCEEEEETT
T ss_pred EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCE-----EEEEccCCeEEEEECC
Confidence 9999999999999998764 34577788876 799999999 6777 999999999 999554
Q ss_pred --CCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 464 --GHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 464 --~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
+.......|...|.+++|+|++++||+++.+
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 3455666889999999999999999999865
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.6e-30 Score=244.73 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=176.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|||++||+|+.+| ++||++.+++.. ...+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------------~~~~~------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------------MSQEM------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------EEEEC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------------eeeec-------
Confidence 35899999999999999999998775 789998865321 11222
Q ss_pred ccccccceeEEEEeecCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+..+++. ++++.+ ++++.|++|++||..+++.....
T Consensus 59 -----~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~---------------------------------- 97 (355)
T 3vu4_A 59 -----RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVSRI---------------------------------- 97 (355)
T ss_dssp -----SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEEEE----------------------------------
T ss_pred -----CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEEEE----------------------------------
Confidence 347778887 555666 56778899999999988755432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+...|.+++|+++ .++++.++.|++||+....+.+.. +..
T Consensus 98 ----------------------------~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~-------~~~-- 138 (355)
T 3vu4_A 98 ----------------------------KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD-------DIR-- 138 (355)
T ss_dssp ----------------------------ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC-------CEE--
T ss_pred ----------------------------ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE-------ecc--
Confidence 34568999999876 455566889999999954233332 222
Q ss_pred cceEEEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCC-cceeeecccceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....+++++ . .+.++ |+.||.|++||+++++.......... .....+ ...+.+|...|.+++|+|+|++|+++
T Consensus 139 -~~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~--~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 -FGGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ--QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp -EEEEEEEET-T-EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred -CCceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCcccccccccc--ccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 444566777 3 33333 68899999999987642110000000 000011 23456789999999999999999998
Q ss_pred c-CCc-EEEEEeeCCCCceeEee-c-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMN-LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~-i~lwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++ |++||+++ ++.+..+. + |...+ ++++|+|++++|++++.|++|+|||+..+
T Consensus 214 s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQDGTIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCSEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred eCCCCEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 6 598 99999986 88888887 5 76655 79999999999999999999999999865
No 108
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-30 Score=249.69 Aligned_cols=264 Identities=13% Similarity=0.195 Sum_probs=216.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|.+++|+ +++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-------- 199 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE---------------------------CIHTLYGHT-------- 199 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc---------------------------EEEEECCCC--------
Confidence 589999999997 6799999999999999998765 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ ++.+++++.|++|++||+.+++.....
T Consensus 200 ----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~------------------------------------ 235 (445)
T 2ovr_B 200 ----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVL------------------------------------ 235 (445)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEE------------------------------------
T ss_pred ----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999995 468999999999999999887654432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++| +++.+++| .|+.|++||+++ ...+.. +.+|..
T Consensus 236 -------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~-------~~~~~~ 280 (445)
T 2ovr_B 236 -------------------------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHT-------LQGHTN 280 (445)
T ss_dssp -------------------------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEE-------ECCCSS
T ss_pred -------------------------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEE-------ecCCCC
Confidence 578889999999 67889998 999999999984 444443 568899
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++| ++ ..+++++.||.|++||+++++.. ..+. +|...+.++.+ ++++|++++ |
T Consensus 281 ~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~v~~~~~--~~~~l~~~~~d 338 (445)
T 2ovr_B 281 RVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLT-------------GHQSLTSGMEL--KDNILVSGNAD 338 (445)
T ss_dssp CEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCCSCEEEEEE--ETTEEEEEETT
T ss_pred ceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEc-------------CCcccEEEEEE--eCCEEEEEeCC
Confidence 9999999 66 89999999999999999987543 3333 35667777766 467888885 6
Q ss_pred CcEEEEEeeCCCCceeEeec---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE-
Q 010801 348 MNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV- 423 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 423 (501)
+.|++||+++ ++.+..+.+ |...+ ++++|+ +++|++|+.||.|++||+.+++.+ ..+
T Consensus 339 g~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~ 399 (445)
T 2ovr_B 339 STVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RNLV 399 (445)
T ss_dssp SCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EEEE
T ss_pred CeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCcee-eeee
Confidence 9999999986 888888876 33333 678885 679999999999999999998554 555
Q ss_pred ----ecccCcccceeeccCCccccCccceeeeecccce
Q 010801 424 ----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 424 ----~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..|...+.+++++| ++.+ +++|+.|+.
T Consensus 400 ~~~~~~~~~~v~~~~~s~--~~~~-----la~~~~dg~ 430 (445)
T 2ovr_B 400 TLESGGSGGVVWRIRASN--TKLV-----CAVGSRNGT 430 (445)
T ss_dssp ECTTGGGTCEEEEEEECS--SEEE-----EEEECSSSS
T ss_pred ccccCCCCceEEEEEecC--CEEE-----EEEcccCCC
Confidence 47888999999998 7777 899998874
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-30 Score=236.86 Aligned_cols=241 Identities=17% Similarity=0.254 Sum_probs=195.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|++++|++|+.||.|++|++..... .+....+.+|.
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~-------- 104 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ-------- 104 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS--------
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc--------
Confidence 5789999999999999999999999999999876532 22345678888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. ++++++++.|+.|++|| .++....
T Consensus 105 ----~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~------------------------------------- 137 (313)
T 3odt_A 105 ----GNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYN------------------------------------- 137 (313)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEE-------------------------------------
T ss_pred ----cCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEe-------------------------------------
Confidence 889999994 56999999999999999 2222211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ ..|...+.+++|.| +++.++++ .|+.|++||.. .....+ ...|.
T Consensus 138 -----------------------~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~------~~~~~ 184 (313)
T 3odt_A 138 -----------------------L-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF------SGIHN 184 (313)
T ss_dssp -----------------------E-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE------CSSCS
T ss_pred -----------------------c-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE------eccCc
Confidence 1 57888999999988 89999998 99999999944 333321 23388
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..+.+++|+|++ . +++++.||.|++||+++++.. ..+. +|...|.+++|+|++++++++.|
T Consensus 185 ~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~l~~~~~d 245 (313)
T 3odt_A 185 DVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RTYE-------------GHESFVYCIKLLPNGDIVSCGED 245 (313)
T ss_dssp SCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEECTTSCEEEEETT
T ss_pred ccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hhhh-------------cCCceEEEEEEecCCCEEEEecC
Confidence 899999999998 6 999999999999999887543 3333 46789999999999964444457
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+.|++||+++ ++.+..+..|...+ ++++|+|+++ +++++.||.|++|++.+++.
T Consensus 246 g~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 246 RTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999986 88888888887654 7999999998 56799999999999987643
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=5.4e-30 Score=237.62 Aligned_cols=246 Identities=19% Similarity=0.297 Sum_probs=198.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.||+|+||++.+++. +..+.+|.
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---------------------------~~~~~~h~-------- 109 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS-------- 109 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS--------
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---------------------------EEEecCcc--------
Confidence 5788999999999999999999999999999987753 47788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+.++.+ ++..+++++.++.+++|+........
T Consensus 110 ----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-------------------------------------- 143 (318)
T 4ggc_A 110 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-------------------------------------- 143 (318)
T ss_dssp ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE--------------------------------------
T ss_pred ----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeE--------------------------------------
Confidence 66777665 45799999999999999987654221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+ .+|...+..+.+++++++++++ .|+.|++||+++....... ......+..
T Consensus 144 ---------------------~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~ 197 (318)
T 4ggc_A 144 ---------------------ATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 197 (318)
T ss_dssp ---------------------EEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCS
T ss_pred ---------------------EEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCC
Confidence 111 5888999999999999999999 9999999999844322111 012456778
Q ss_pred ceEEEEEecCCCcEEE--EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.|.+++++|++...+. +++.++.|++||.+..... ... .+...+..+.|+|+++.+++++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~--------------~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAV--------------DAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEE--------------ECSSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----ccc--------------cceeeeeeeeecccccceEEEE
Confidence 8999999998755543 5567899999999876432 111 2356799999999999887642
Q ss_pred ---CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ---~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|++||+++ ++++.++.+|...+ ++++|+|++++|++|+.||+|+|||+.+.
T Consensus 260 g~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 260 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 59999999986 89999999998876 89999999999999999999999999754
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=3e-30 Score=247.63 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=201.0
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.|++++|+| ++++||+|+.||.|+|||+.++... ....+....+.+|.
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~------ 131 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT------ 131 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS------
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC------
Confidence 46999999999999 9999999999999999999877431 00112446788898
Q ss_pred cccccccceeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|.+++|+ |++ .+|++++.|+.|++||+.+++......
T Consensus 132 ------~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------- 171 (402)
T 2aq5_A 132 ------KRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------------------- 171 (402)
T ss_dssp ------SCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEEC--------------------------------
T ss_pred ------CeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEe--------------------------------
Confidence 899999998 676 699999999999999999876443220
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-C
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-D 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 264 (501)
...|...|.+++|+|++++|+++ .|+.|++||++. ++.... + .
T Consensus 172 ---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-------~~~ 216 (402)
T 2aq5_A 172 ---------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAE-------KDR 216 (402)
T ss_dssp ---------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEE-------EEC
T ss_pred ---------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-Cceeee-------ecc
Confidence 04688899999999999999999 999999999994 444443 3 4
Q ss_pred Ccccc-eEEEEEecCCCcEEEEE---eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~---~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.|... +.++.|+|++ ++|+++ +.|+.|++||+++.+... ..... .|...+..++|+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTN 280 (402)
T ss_dssp SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTT
T ss_pred CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCC
Confidence 56654 8999999998 999998 789999999998865321 12211 2356799999999999
Q ss_pred EEE-EEc-CCcEEEEEeeCCCCc-eeEeeccc--cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 341 HLL-SRD-YMNLKLWDIRMDSTP-VATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 341 ~l~-~~~-~~~i~lwd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+ +++ |+.|++||+.+ +++ +..+..+. ..+ .+++|+|++.++++ .++.+++|++.+
T Consensus 281 ~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCC
Confidence 986 554 69999999986 543 66666554 332 68999999998875 566999999988
Q ss_pred CCcc
Q 010801 416 GSAG 419 (501)
Q Consensus 416 ~~~~ 419 (501)
+...
T Consensus 343 ~~~~ 346 (402)
T 2aq5_A 343 RKCE 346 (402)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7443
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.2e-29 Score=246.00 Aligned_cols=263 Identities=15% Similarity=0.239 Sum_probs=214.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++| +++++++|+.||.|++||+.+++.....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~---------------------------------------- 169 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRIL---------------------------------------- 169 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEE----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEE----------------------------------------
Confidence 67888886 6889999999999999999887654432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...|.+++| ++++|++| .||.|++||+.++ +.... +.+|...|.+
T Consensus 170 ---------------------~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-~~~~~-------~~~h~~~v~~ 218 (435)
T 1p22_A 170 ---------------------TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-EMLNT-------LIHHCEAVLH 218 (435)
T ss_dssp ---------------------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-CEEEE-------ECCCCSCEEE
T ss_pred ---------------------cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-cEEEE-------EcCCCCcEEE
Confidence 689999999998 78899999 9999999999944 44443 5689999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|++ .++++++.||.|++||++++... ... ..+.+|...|.+++| ++++|++++ |+.|+
T Consensus 219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----~~~----------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 219 LRFNN---GMMVTCSKDRSIAVWDMASPTDI----TLR----------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EECCT---TEEEEEETTSCEEEEECSSSSCC----EEE----------EEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEcC---CEEEEeeCCCcEEEEeCCCCCCc----eee----------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99973 58999999999999999876532 111 113457789999998 688999885 59999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+||+++ ++.+..+.+|...+ .+++| ++++|++|+.||.|++||+.+++ ....+.+|...+.
T Consensus 280 vwd~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~ 340 (435)
T 1p22_A 280 VWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVR 340 (435)
T ss_dssp EEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEE
T ss_pred EEECCc-CcEEEEEcCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEE
Confidence 999986 88888998887765 67777 57899999999999999999884 4588999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eecccc--C---------CcccccccCCCeEEEEEccCCCEEEEeeC-CeEEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 498 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~---------~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i 498 (501)
++.+ ++.+ +++|+.|+. .+|+.. . .......|...|++++| ++++|++++. +.+++
T Consensus 341 ~~~~----~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 341 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred EEEe----cCCE-----EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 9988 4555 899999999 999443 1 33445688999999999 7888999985 55999
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|+
T Consensus 410 wd 411 (435)
T 1p22_A 410 WD 411 (435)
T ss_dssp EC
T ss_pred EE
Confidence 97
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=251.81 Aligned_cols=248 Identities=14% Similarity=0.159 Sum_probs=169.5
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+.|++++|+ |++++|++|+.||.|++|++.+++......
T Consensus 28 ~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------------------------------- 67 (447)
T 3dw8_B 28 ADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHS-------------------------------------- 67 (447)
T ss_dssp GGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCC--------------------------------------
T ss_pred cCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCccc--------------------------------------
Confidence 3889999998 799999999999999999998765211000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcc------------cceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
.+ ..++...+ .+|. ..|.+++|+|++ ..|+++ .|+.|++||+.........+.
T Consensus 68 ~~-----------~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 68 RG-----------EYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp CC-----------CEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCS
T ss_pred cc-----------ceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceec
Confidence 00 01122223 5676 889999999998 788888 999999999873221100000
Q ss_pred cCC--------------------------------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 258 MKP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 258 ~~~--------------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
... ....+|...|.+++|+|++ ++|+++ .|+.|++||+++.....
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~- 212 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF- 212 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE-
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee-
Confidence 000 0136799999999999998 999998 79999999998543221
Q ss_pred ccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEeeCCCCc----eeEeeccccccccccccC
Q 010801 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~ 379 (501)
..+.. ....+.+|...|.+++|+|++ ++|++++ |+.|++||+++ ++. +..+.+|...........
T Consensus 213 --~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
T 3dw8_B 213 --NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSE 283 (447)
T ss_dssp --EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCHHHH
T ss_pred --eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCccccccccc
Confidence 22111 001235678899999999998 8999886 59999999986 554 677777764100000000
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
....+.+++|+|++++|++++. +.|++||+.+.......+.+|..
T Consensus 284 ---~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 284 ---IISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp ---HTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred ---cCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 0001279999999999999999 99999999873344566777754
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.5e-30 Score=246.86 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=198.5
Q ss_pred cceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|++++|+ |+ +.+|++++.||.|++|++.........
T Consensus 129 ~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--------------------------------------- 167 (430)
T 2xyi_A 129 GEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEP--------------------------------------- 167 (430)
T ss_dssp SCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------------------------------------
T ss_pred CcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCc---------------------------------------
Confidence 899999998 54 678999999999999999763210000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+ ...+...+ .+|...|++++|+|++. +|++| .||.|++|++.........+. ....+.+|...|
T Consensus 168 ~~-----------~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v 234 (430)
T 2xyi_A 168 SG-----------ECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHTAVV 234 (430)
T ss_dssp TC-----------CCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECCCSSCE
T ss_pred cc-----------cCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecCCCCCE
Confidence 00 01122222 68899999999999988 99999 999999999985322111100 011256799999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEc-CC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YM 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~-~~ 348 (501)
.+++|+|++..+|++++.||.|++||++++... .....+ ..|...|.+++|+|+++ +|++|+ ++
T Consensus 235 ~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~-------------~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTV-------------DAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEE-------------ECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEe-------------ecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 999999954489999999999999999976311 001222 34678999999999997 577775 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCC----------
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS---------- 417 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------- 417 (501)
.|++||++....++..+..|...+ ++++|+|+++ +|++++.||.|+|||+....
T Consensus 301 ~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 301 TVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp EEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred eEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 999999986567788888887765 7999999985 79999999999999998632
Q ss_pred ---cceEEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC
Q 010801 418 ---AGGITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 418 ---~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+...+.+|...+..++++| ++. + +++++.++. .+|+...
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p--~~~~~-----l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNP--NEPWI-----ICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECS--SSTTE-----EEEEETTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECC--CCCCE-----EEEEECCCCEEEeEccc
Confidence 34567788999999999999 444 5 899999999 9996653
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=247.94 Aligned_cols=259 Identities=10% Similarity=0.073 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+|+|+ |||+++|+++.|++|+ |...++.
T Consensus 16 ~~v~sv~~S--pDG~~iASas~D~TV~--d~~~~~~-------------------------------------------- 47 (588)
T 2j04_A 16 DWKNNLTWA--RDGTLYLTTFPDISIG--QPKYAKD-------------------------------------------- 47 (588)
T ss_dssp SSSCCEEEC--TTSCEEEECSSSEEEE--EECCCSC--------------------------------------------
T ss_pred ccEEEEEEC--CCCCEEEEEcCCceee--cccccce--------------------------------------------
Confidence 789999998 8999999999999999 5333221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+ .+|...|++++|+|+| .++.+.+|+.+ +.... .+ .|...|.++
T Consensus 48 -------------------l-~gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~~~--------~~-~~~~~V~~v 91 (588)
T 2j04_A 48 -------------------I-NCNSKNLFHVKEFPLE------FENKLDFELAQ-QNGLL--------NS-QPVCYPRVC 91 (588)
T ss_dssp -------------------C-SSBGGGTEEEEEECCC------CCCTTTTSCCC-SSCSS--------TT-SCSCCEEEE
T ss_pred -------------------e-cCCCccEEEEEECCCC------CcceEEEEeCC-CceEe--------ec-CCCCcEEEE
Confidence 1 5899999999999999 46666666544 22221 12 457899999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~l 352 (501)
+|+|+| .+|++++.||.|++||... .. ..++ |...- -...+.+++|||||++|++|+ ||+|++
T Consensus 92 awSPdG-~~LAs~s~dg~V~iwd~~~--~l----~~l~-~~~~~--------~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 92 KPSPID-DWMAVLSNNGNVSVFKDNK--ML----TNLD-SKGNL--------SSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp EECSSS-SCEEEEETTSCEEEEETTE--EE----EECC-CSSCS--------TTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EECCCC-CEEEEEeCCCcEEEEeCCc--ee----eecc-CCCcc--------ccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 999999 9999999999999999543 11 2222 11000 013599999999999999987 599999
Q ss_pred EEeeCCCCc-------eeEe----eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc--c
Q 010801 353 WDIRMDSTP-------VATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--G 419 (501)
Q Consensus 353 wd~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~ 419 (501)
||+.. +.. +.++ .+|...+ .+++|+||| +++++.|+.|++|++.++.. .
T Consensus 156 Wd~~~-~~l~~~~~i~l~ti~~~~~gh~~~V---------------~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 156 FSIRK-NSENTPEFYFESSIRLSDAGSKDWV---------------THIVWYEDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp EECCC-CTTTCCCCEEEEEEECSCTTCCCCE---------------EEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred EECCC-CccccccceeeeeeecccccccccE---------------EEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence 99985 442 5666 3444444 799999999 88899999999999988753 2
Q ss_pred eEEE-ecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-c-ccccccCCCeEEEEE--ccCCCEEEEeeC
Q 010801 420 GITV-EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-H-ELSYNLSSKLLHLAW--HPTTNLIACANG 493 (501)
Q Consensus 420 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~-~~~~~~~~~i~~~~~--sp~~~~la~~~~ 493 (501)
..++ .+|...|.+++|+ +.. +++++ ++. ++|+.... . ....+|...|..++| +|++..|+++..
T Consensus 218 ~~tL~~~h~~~V~svaFs----g~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV----DYK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp EEEEECCCSSCCCCEEEE----TTE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred eeeecccccCcEEEEEEE----CCE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence 3567 4888999999998 244 78887 467 99965533 3 333389999999999 999999999998
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
++..+|.
T Consensus 288 dG~klw~ 294 (588)
T 2j04_A 288 TSYKVLL 294 (588)
T ss_dssp CEEEEEE
T ss_pred CCCEEEe
Confidence 8777775
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.5e-30 Score=245.95 Aligned_cols=266 Identities=9% Similarity=-0.017 Sum_probs=174.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...+....+++++.+||+|+.|++|+|||..+++.. .......+.||.
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~--------- 136 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH--------- 136 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS---------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC---------
Confidence 3444455555667789999999999999999987542 233456788999
Q ss_pred ccccceeEEEEeec------CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 111 EIEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 111 ~~~~~V~~v~~~~~------~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|++|+|+|. .++++|++++.|++|+|||+.++......
T Consensus 137 ---~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~------------------------------- 182 (393)
T 4gq1_A 137 ---NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG------------------------------- 182 (393)
T ss_dssp ---SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-------------------------------
T ss_pred ---CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-------------------------------
Confidence 99999999851 27889999999999999999876533221
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeee-----
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD----- 257 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~----- 257 (501)
..|...|.+++|+|++. +|++| .|++|++||+++.........
T Consensus 183 ------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 183 ------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp ------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred ------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 46778999999999875 78888 999999999985433221100
Q ss_pred --------c----CCCCCCCcccceEEEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc----
Q 010801 258 --------M----KPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---- 320 (501)
Q Consensus 258 --------~----~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---- 320 (501)
. ......+|...+.++.|. |++ +.|++++.|+.+++||+..+.... .+..|.......
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~----~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYN----EISDSTMKLGPKNLLP 307 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSC
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCc----eEeeecCccccEEEcc
Confidence 0 001234678889999997 787 999999999999999998765431 111111000000
Q ss_pred --ceeeecccceeEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 321 --SFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 321 --~~~~~h~~~i~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
.....+ .......++| ++.++++|+ |+.|++||+.+ ++....+..|...+ ++++|+||
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspd 370 (393)
T 4gq1_A 308 NVQGISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQD 370 (393)
T ss_dssp SEEEECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTT
T ss_pred cccccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCC
Confidence 001112 2233344554 344566675 59999999986 77777777777655 79999999
Q ss_pred CcEEEEEeCCCeEEEEecC
Q 010801 396 GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 396 ~~~l~s~~~dg~i~iwd~~ 414 (501)
|++||+++.+| +.+|.+.
T Consensus 371 G~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 371 GSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEeCCC-eEEEEEe
Confidence 99999999876 5556543
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.9e-28 Score=237.61 Aligned_cols=280 Identities=8% Similarity=0.049 Sum_probs=210.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~--------- 169 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL--------- 169 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence 4456779999998888888888999999999877542 000011345777
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|.+++|+ +++.++++++.|+.|++||+.+++.....
T Consensus 170 ---~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------------------------- 207 (433)
T 3bws_A 170 ---GFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATV------------------------------------- 207 (433)
T ss_dssp ---CEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred ---CceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEE-------------------------------------
Confidence 889999996 78889999999999999999887644332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...+.+++|+|+++.++ ++ .++.|++||++ .++.... +.. ..
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~~-~~ 254 (433)
T 3bws_A 208 ------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TDK-IG 254 (433)
T ss_dssp ------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CCC-CS
T ss_pred ------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ecC-CC
Confidence 46778899999999999885 56 79999999998 4444443 232 34
Q ss_pred ceEEEEEecCCCcEEEEEe--------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 269 VITSAEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.+.+++|+|++ +.|++++ .||.|++||+++++.. ..+. |...+..++|+|+++
T Consensus 255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTEN 315 (433)
T ss_dssp EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTT
T ss_pred CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCC
Confidence 58999999999 8888887 5889999999887543 2221 245788999999998
Q ss_pred EEE-EEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--------------
Q 010801 341 HLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-------------- 404 (501)
Q Consensus 341 ~l~-~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------------- 404 (501)
+++ ++. ++.|++||+.+ ++.+..+..... + .+++|+|++++|++++.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK-P---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECSSS-E---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred EEEEEecCCCEEEEEECCC-CcEEEEecCCCC-C---------------CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 665 444 59999999985 777666653322 2 68999999999888876
Q ss_pred -CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEcc
Q 010801 405 -SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 405 -dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp 483 (501)
||.|++||+.+++.. ..+.. ...+.+++|+|
T Consensus 379 ~dg~v~~~d~~~~~~~-~~~~~-----------------------------------------------~~~~~~~~~s~ 410 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVK-EFWEA-----------------------------------------------GNQPTGLDVSP 410 (433)
T ss_dssp SCCEEEEEETTTTEEE-EEEEC-----------------------------------------------SSSEEEEEECT
T ss_pred cceEEEEEECCCCcEE-EEecC-----------------------------------------------CCCCceEEEcC
Confidence 579999999876322 11110 12567999999
Q ss_pred CCCEEEEee--CCeEEEEe
Q 010801 484 TTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 484 ~~~~la~~~--~~~~~i~~ 500 (501)
++++|++++ ++.+++|+
T Consensus 411 dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp TSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 999988775 56799986
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-29 Score=256.29 Aligned_cols=251 Identities=15% Similarity=0.133 Sum_probs=199.1
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++|+.||.|++||+.++...
T Consensus 3 ~~l~gH~------------~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~------------------------ 44 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHK------------------------ 44 (753)
T ss_dssp -----CC------------CCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEE------------------------
T ss_pred eecccCc------------ceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCc------------------------
Confidence 4578898 999999998 78999999999999999998744321
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCe
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
+...+ .+|...|++++|+|+ +++|++| .||.|++||+.....
T Consensus 45 ----------------------------------~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 45 ----------------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp ----------------------------------EEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ----------------------------------cceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 22222 689999999999988 9999999 999999999994331
Q ss_pred -eeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 252 -CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
... .+.+|...|.+++|+|+ + +++++++.||.|++||++++..... .. +.+|..
T Consensus 90 ~~~~-------~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--~~-------------~~~~~~ 146 (753)
T 3jro_A 90 SQIA-------VHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDAHAI 146 (753)
T ss_dssp EEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--EE-------------EECCSS
T ss_pred cccc-------cccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--eE-------------eecCCC
Confidence 222 25779999999999999 8 9999999999999999988643210 11 234678
Q ss_pred ceeEEEEee-------------CCCEEEEEc-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEE
Q 010801 329 SISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 329 ~i~~~~~sp-------------~~~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.|.+++|+| ++++|++|+ ||.|++||++... .....+.+|...+ ++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~ 211 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVA 211 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEE
Confidence 999999999 588888885 5999999998632 3445666777655 7999
Q ss_pred EcCC---CcEEEEEeCCCeEEEEecCCCCc----ceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 392 VSGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 392 ~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
|+|+ +++|++|+.||.|++||+.++.. .......|...+.+++++| ++.+ +++|+.|+. .+|+..
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWKEN 284 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCBCC
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEecC
Confidence 9999 99999999999999999988632 2233456889999999999 6777 999999999 999543
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-28 Score=234.72 Aligned_cols=259 Identities=8% Similarity=0.035 Sum_probs=191.4
Q ss_pred ccccceEEEEEccCCCEE-EEEecCCcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCcch
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~ 104 (501)
.|.+.|++++|+|+|++| |+|+.||.|+|||+. +++.. ..+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~---------------------------~~~~~~~~~--- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL---------------------------KLRKRFCFS--- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------------EEEEEEECS---
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------------eeeecccCC---
Confidence 466789999999999996 899999999999998 65432 3343 455
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..|.+++|+ |++.+|++++.|+.|++|++.++.....
T Consensus 150 ---------~~v~~~~~s--p~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------------------------- 186 (450)
T 2vdu_B 150 ---------KRPNAISIA--EDDTTVIIADKFGDVYSIDINSIPEEKF-------------------------------- 186 (450)
T ss_dssp ---------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred ---------CCceEEEEc--CCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence 789999998 7899999999999999999987653210
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
+...+ .+|...|.+++|+|+ +++|++| .|+.|++||+... .....+
T Consensus 187 ------------------------~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~---- 236 (450)
T 2vdu_B 187 ------------------------TQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW---- 236 (450)
T ss_dssp ------------------------CCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE----
T ss_pred ------------------------cceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee----
Confidence 00011 578899999999999 9899999 9999999999844 333321
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccc----------cCCC--cceeeeccc
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----------SHGS--KSFFTEIIA 328 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~h~~ 328 (501)
+.+|...|.+++|+ ++ ++|++++.|+.|++||+++++.. ..+..+.. .+.. .........
T Consensus 237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceE
Confidence 56799999999999 88 99999999999999999988644 22322100 0000 000012346
Q ss_pred ceeEEEEeeCCCEEEEEc--CCcEEEEEe--eCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 329 SISDIKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~~~i~lwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.+..++|+|++++|+++. ++.|++|++ .. + +.+..+..+ ..+ .+++|+|++.++++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTL 371 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEE
Confidence 799999999999999875 499999999 43 4 455666666 332 79999996544444
Q ss_pred EeC------CCeEEEEecCCC
Q 010801 402 GSY------SNLLRIFSHGVG 416 (501)
Q Consensus 402 ~~~------dg~i~iwd~~~~ 416 (501)
++. +..|.+|.+...
T Consensus 372 ~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 372 DNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CCTTCCSSCCCSEEEEEEETT
T ss_pred ecccCCCCCCcceEEEEEEcC
Confidence 443 556889987643
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.2e-27 Score=213.15 Aligned_cols=274 Identities=10% Similarity=0.079 Sum_probs=185.0
Q ss_pred ceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc--
Q 010801 34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK-- 108 (501)
Q Consensus 34 ~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-- 108 (501)
.+.++-|-..|- -++++++ ..|++|+..++. .++...+++.|+....-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~ 95 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW------------------------QWEKLYTWHFAEVPVLQIVPV 95 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc------------------------cceeeEEEeccCceeEEEEEc
Confidence 467777766543 5677775 589999988762 3456666777762111110
Q ss_pred ------------ccccccceeEEEEeecCC----CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 109 ------------SLEIEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 109 ------------~~~~~~~V~~v~~~~~~~----~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.++ ...|..|+++ |+ ++.+++++. .+++|++.+++........
T Consensus 96 ~~~~~~~~~~~~~~~-~~~v~sla~s--pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g---------------- 154 (356)
T 2w18_A 96 PDVYNLVCVALGNLE-IREIRALFCS--SDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTL---------------- 154 (356)
T ss_dssp TTCCSCEEEEECSSS-EEEEEEECC--------CCEEEEEEEE--EEEEEEETTTEEEEEESSS----------------
T ss_pred Ccccceeeeeecccc-ccceEEEEEC--CCccccccEEEeCCC--eEEEEecCCCcEEEecccC----------------
Confidence 011 1468888887 67 888888874 4888999877765542100
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~ 248 (501)
-++.|++|++... ++.+..+ ..|...+..++|++ ++..|++| .|++|+|||+.
T Consensus 155 -------------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~- 211 (356)
T 2w18_A 155 -------------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK- 211 (356)
T ss_dssp -------------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-
T ss_pred -------------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-
Confidence 1678999999553 3344443 57888899999998 78999998 99999999999
Q ss_pred CCeeeeeeecCCCCCCCc---ccceEEEEEecCCCcEE------------EEEeCCCeEEEEEccCCcccccccceeecc
Q 010801 249 SDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l------------~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
.++++++ +.+| ...+.+++|+|+| .++ ++|+.|++|++||..+++.. .++..
T Consensus 212 TGk~l~t-------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~- 278 (356)
T 2w18_A 212 TGQLLKK-------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY- 278 (356)
T ss_dssp TCCEEEE-------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-
T ss_pred CCcEEEE-------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-
Confidence 4555554 3332 3467888999998 776 56788999999999988643 22211
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.. ..+|...+.+. +.++.++++++ |++|+|||+.+ ++.+.++.+|...+. ..++|
T Consensus 279 ~~-------p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vaf 334 (356)
T 2w18_A 279 CL-------PPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKW 334 (356)
T ss_dssp CC-------CTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEE
T ss_pred ec-------cCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEE
Confidence 00 01333444333 33488899886 69999999997 999999998876431 35899
Q ss_pred cCCCcEEEEEeCCCeEEEEec
Q 010801 393 SGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999996
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.3e-27 Score=222.88 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=217.0
Q ss_pred cccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..|
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence 3455679999999999987 6677899999999987653 2334333
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ |++++|++++ .++.|++||+.+++.....
T Consensus 74 ------~~v~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--------------------------------- 112 (391)
T 1l0q_A 74 ------SSPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTV--------------------------------- 112 (391)
T ss_dssp ------SSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------------------
T ss_pred ------CCccceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEE---------------------------------
Confidence 468999998 7888876554 6799999999987754432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+...+.+++|+|+++.+ +++ .++.|++||+. .++.... +.
T Consensus 113 -----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~-------~~ 155 (391)
T 1l0q_A 113 -----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINT-------VS 155 (391)
T ss_dssp -----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EE
T ss_pred -----------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEE-------Ee
Confidence 223467899999999977 567 89999999998 4454443 22
Q ss_pred CcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+ ..+.+++|+|++ +.| ++++.++.|++||+++++.. ..+.. ...+.+++|+|++++|+
T Consensus 156 ~~-~~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 156 VG-RSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp CC-SSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEE
T ss_pred cC-CCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEE
Confidence 22 456899999999 665 67788999999999887543 22222 35789999999999888
Q ss_pred EEc----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE-EEEeCCCeEEEEecCCCCc
Q 010801 344 SRD----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 344 ~~~----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~ 418 (501)
+++ ++.|++||+++ ++.+..+..+... .+++|+|++++| ++++.|+.|++||+.++ .
T Consensus 216 ~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~ 277 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-T 277 (391)
T ss_dssp EEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-E
T ss_pred EEecCcCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-c
Confidence 764 49999999986 7777777766543 589999999877 67788999999999987 4
Q ss_pred ceEEEecccCccc---ceeecc------------CCcccc---Cccceeeeecccce-eeccccCCcccccccCCCeEEE
Q 010801 419 GGITVEAGKNENR---KPILQA------------APRARR---SSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL 479 (501)
Q Consensus 419 ~~~~~~~~~~~v~---~~~~~~------------~~~~~~---~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~ 479 (501)
+...+..+..+.. .+.+.| ...... .....+...+.+.. .+|+.+..... .... ...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~--~~~~--~~~ 353 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS--KKQN--PTH 353 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE--CSSS--CEE
T ss_pred EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc--CcCC--CeE
Confidence 4466766655432 112111 100000 00012555566666 78865432221 1122 236
Q ss_pred EEccCCCEEEEee
Q 010801 480 AWHPTTNLIACAN 492 (501)
Q Consensus 480 ~~sp~~~~la~~~ 492 (501)
.|+|+|.+.+...
T Consensus 354 ~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 354 TYSETGIYTVRLT 366 (391)
T ss_dssp CCSSCEEEEEEEE
T ss_pred EeCCCceEEEEEE
Confidence 7899998877554
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=227.62 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=182.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+++.++++|+.||+|++||+.+++.....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~--------------------------------------------------- 74 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTI--------------------------------------------------- 74 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEE---------------------------------------------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEE---------------------------------------------------
Confidence 46789999999999999999988754432
Q ss_pred eeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC-----CCCcccceEEEEEec-
Q 010801 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVITSAEFHP- 277 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~~p- 277 (501)
. ...|.++.|+|+ ++++ .|++|++|+... . ...++..... ..+|...|.+++|+|
T Consensus 75 ----------~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 75 ----------T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-Q--ITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ----------E--EECCCTTCCCCS---EEEECSTTEEEEEETTT-E--EEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred ----------e--cCCceeeeeCCc---eEEecCCCeEEEEEccC-c--eEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 1 234556677777 7777 999999998762 1 1111111111 235668899999999
Q ss_pred -CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEe
Q 010801 278 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 355 (501)
Q Consensus 278 -~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~ 355 (501)
++ ++|++++.||.|++||+++++.. ..... .|...+.+++|+|+|++|++|+ |+.|++||+
T Consensus 137 ~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 137 VNT-EYFIWADNRGTIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp --C-CEEEEEETTCCEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 98 99999999999999999987542 22222 1345799999999999999985 699999999
Q ss_pred eCCCCce-eEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc--eEEEecccCccc
Q 010801 356 RMDSTPV-ATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR 431 (501)
Q Consensus 356 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~ 431 (501)
++ ++.+ ..+.. |...+ ++++|+|++.+|++++. +.|++||+.+++.. ...+..|...+.
T Consensus 200 ~~-~~~~~~~~~~~h~~~v---------------~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 200 SS-PDQASSRFPVDEEAKI---------------KEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp SC-TTSCCEECCCCTTSCE---------------EEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred CC-CCCCccEEeccCCCCE---------------EEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccccccccc
Confidence 97 6655 77777 77665 79999999999999994 59999999987543 122223444554
Q ss_pred --ceeeccCCccccCccceeeeecc-cce-eeccccCCcccccccCCCeEEEEEcc---CCCEEEEeeCC-eEEE
Q 010801 432 --KPILQAAPRARRSSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGN-SLFF 498 (501)
Q Consensus 432 --~~~~~~~~~~~~~~~~~l~~~~~-~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp---~~~~la~~~~~-~~~i 498 (501)
+++|+| ++++ |++++. ++. .+|+.......... .++..++|+| +.+.|++++.+ .+.+
T Consensus 263 ~~~~~~~~--~g~~-----l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 263 TVTYDIDD--SGKN-----MIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CEEEEECT--TSSE-----EEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ceEEEECC--CCCE-----EEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEE
Confidence 488888 7777 888877 777 99955322111100 4566778887 77777776643 3444
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-26 Score=221.16 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=192.5
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
.++++++.|+.|++||+.+++. ...+.+|. .+.+++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~s-- 40 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVIS-- 40 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEEC--
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEEC--
Confidence 4678889999999999987653 35566664 48999998
Q ss_pred CCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 125 ~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
|+++++ ++++.|+.|++||+.+++.....
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-------------------------------------------------- 70 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTATNNVIATV-------------------------------------------------- 70 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------------------------------------------------
T ss_pred CCCCEEEEECCCCCeEEEEECCCCeEEEEE--------------------------------------------------
Confidence 788876 56668999999999887755432
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
.. ...+.+++|+|+++.+++ + .++.|++||+. .++....+ . +...+.+++|+|++ +
T Consensus 71 -----------~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg-~ 128 (391)
T 1l0q_A 71 -----------PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTV-------K-TGKSPLGLALSPDG-K 128 (391)
T ss_dssp -----------EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-CSSSEEEEEECTTS-S
T ss_pred -----------EC-CCCccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEE-------e-CCCCcceEEECCCC-C
Confidence 22 238899999999998755 5 78999999999 44444432 2 33467999999999 6
Q ss_pred EE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEc-CCcEEEEEeeCC
Q 010801 282 LL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMD 358 (501)
Q Consensus 282 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~-~~~i~lwd~~~~ 358 (501)
.| ++++.++.|++||+.+++.. ..+.. ...+..++|+|++++|+ ++. ++.|++||+++
T Consensus 129 ~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~- 189 (391)
T 1l0q_A 129 KLYVTNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT- 189 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-
T ss_pred EEEEEeCCCCEEEEEECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-
Confidence 55 78888999999999887543 33333 24578999999999884 554 49999999986
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++.+..+..+... .+++|+|++++|++++ .++.|++||+.+++. ...+..+.. +..+++
T Consensus 190 ~~~~~~~~~~~~~----------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~~~~~ 251 (391)
T 1l0q_A 190 NSVIDTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGPD-PAGIAV 251 (391)
T ss_dssp TEEEEEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCSS-EEEEEE
T ss_pred CeEEEEEecCCCc----------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-EEEEecCCC-ccEEEE
Confidence 6666666543322 6899999999999888 689999999998743 355555543 456667
Q ss_pred ccCCccccCccceeeeecccce-eecccc
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+| +++. .+++++.++. .+|+..
T Consensus 252 s~--dg~~----l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 252 TP--DGKK----VYVALSFXNTVSVIDTA 274 (391)
T ss_dssp CT--TSSE----EEEEETTTTEEEEEETT
T ss_pred cc--CCCE----EEEEcCCCCEEEEEECC
Confidence 66 4443 0356666666 777443
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.3e-26 Score=227.40 Aligned_cols=321 Identities=8% Similarity=0.049 Sum_probs=232.1
Q ss_pred EEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeE
Q 010801 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (501)
Q Consensus 39 ~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 118 (501)
+|+|++.++++++.|++|.+||..+++. +..+..+. . +..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~ 183 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI 183 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence 4899999999999999999999987754 35555332 3 788
Q ss_pred EEEeecCCCCEEEEeeCCCeEEEEec--cccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcce
Q 010801 119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (501)
Q Consensus 119 v~~~~~~~~~~l~s~s~d~~i~lw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (501)
++|+ |++++|++++.|++|++||+ .+++.....
T Consensus 184 v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i------------------------------------------- 218 (543)
T 1nir_A 184 SRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI------------------------------------------- 218 (543)
T ss_dssp EEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE-------------------------------------------
T ss_pred EEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE-------------------------------------------
Confidence 9997 89999999999999999999 665543322
Q ss_pred EEEeccCceeeeeeEeecCCcccceEEEEecC----CCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCC---Cc-
Q 010801 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DL- 266 (501)
Q Consensus 197 ~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~- 266 (501)
.+...+..++|+| +|++++++ .+++|.+||.. ..++++.+........ .|
T Consensus 219 -------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 219 -------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp -------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEES
T ss_pred -------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCcccccc
Confidence 1344678999999 99999887 58999999998 4555555432211111 13
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~- 345 (501)
...+.++.++|+++.++++...++.|.+||..+.+... ...+. +...+..+.|+|+|++++++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~--------------~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG--------------AAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE--------------CCSSCCCEEECTTSCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec--------------cCcCccCceECCCCCEEEEEe
Confidence 23789999999885777888889999999998764321 01111 23567889999999987755
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE-EcCC-CcEEEEEe-CCCeEEEEecCCC-----
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG----- 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-~~~l~s~~-~dg~i~iwd~~~~----- 416 (501)
. +++|.+||+.+ ++++..+.....+-+. .... ++|+ +.+++++. .|++|.+||+++.
T Consensus 343 ~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g-------------~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 343 NNSNKVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp GGGTEEEEEETTT-TEEEEEEECSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred cCCCeEEEEECCC-CeEEEeeccCCCCCCC-------------CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 3 49999999986 7888777642211000 1122 4677 66777775 6899999999882
Q ss_pred -CcceEEEecccCcccceeeccCCccccCccceeeeec-------ccce-eeccccCCcc--cc---------cccCCCe
Q 010801 417 -SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-------YRQA-HENSSSGHHE--LS---------YNLSSKL 476 (501)
Q Consensus 417 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-------~~~~-~iw~~~~~~~--~~---------~~~~~~i 476 (501)
-...+++++|...+..+.++| +++. |.+++ .++. .+|+...... .. .++...+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred cCeEEEEEEcCCCCceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence 245689999999999999998 7777 77776 2456 9995542211 11 3557789
Q ss_pred EEEEEccCCCEEEEee------CCeEEEEeC
Q 010801 477 LHLAWHPTTNLIACAN------GNSLFFHYA 501 (501)
Q Consensus 477 ~~~~~sp~~~~la~~~------~~~~~i~~~ 501 (501)
.+++|+|+|+.|.++. ++.|.||++
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 9999999999988763 467999873
No 125
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.2e-26 Score=240.75 Aligned_cols=333 Identities=9% Similarity=0.072 Sum_probs=225.0
Q ss_pred ccceEEEEEccCCCEEEEEec-CC-----cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC--c-
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE--P- 102 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~- 102 (501)
...|++++|||||++||+++. |+ .|++||+.+++.. ..+..+. +
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~ 88 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG 88 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence 457999999999999999998 88 8999999887542 1111111 0
Q ss_pred ---------chhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc---ceeeeeccCCCcccccccccccc
Q 010801 103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 103 ---------~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.......+.....|.+++|+ |||++|++++. +.|++||+.++ ....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------ 147 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQWS--PDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------ 147 (741)
T ss_dssp ------------------CCEESCCCEEC--TTSSEEEEEET-TEEEEEESSSCSTTSCCBC------------------
T ss_pred cccccchhhhhhhhhhhccccCcceeEEC--CCCCEEEEEeC-CcEEEEECCCCCcceEEEc------------------
Confidence 00000000000347899998 89999999886 89999999887 42221
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~ 250 (501)
..|...+.+++|+|||+.|+.+.++.|++||+. .+
T Consensus 148 --------------------------------------------~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g 182 (741)
T 2ecf_A 148 --------------------------------------------THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SG 182 (741)
T ss_dssp --------------------------------------------CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TT
T ss_pred --------------------------------------------ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CC
Confidence 456677999999999999999866799999998 44
Q ss_pred eeeeeeecCCCCCCCccc----------------ceEEEEEecCCCcEEEEEeCCC------------------------
Q 010801 251 QCFNIVDMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------ 290 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~----------------~v~~v~~~p~~~~~l~~~~~dg------------------------ 290 (501)
....+ ...+.. .+.+++|+||| +.|++++.|+
T Consensus 183 ~~~~~-------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 183 RQMQL-------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEEC-------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred CEEEe-------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 44432 111211 14789999999 8888887765
Q ss_pred ---------eEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc------CCcEEEEE
Q 010801 291 ---------FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWD 354 (501)
Q Consensus 291 ---------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~~~i~lwd 354 (501)
.|.+||+.+ ++.. .+... ..|...+..++| |||++|+.+. +..|++||
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 788888877 6432 11100 124567999999 9999998642 26799999
Q ss_pred eeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce-
Q 010801 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP- 433 (501)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~- 433 (501)
+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.++.... ...+..+...+..+
T Consensus 319 ~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~ 385 (741)
T 2ecf_A 319 LAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL 385 (741)
T ss_dssp TTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE
T ss_pred CCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe
Confidence 986 66666555444210 00014789999999999999999888887763223 57777887777776
Q ss_pred eeccCCccccCccceeeeecccc--e-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeCC-----eEEEEe
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQ--A-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY 500 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~--~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-----~~~i~~ 500 (501)
.++| +++. + +++++.++ . .+|... +...........+..++|+|||++|+....+ .+++++
T Consensus 386 ~~s~--dg~~--l--~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 386 AVDE--KAGL--A--YFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEET--TTTE--E--EEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred EEeC--CCCE--E--EEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 4888 5554 0 34555554 5 899432 2222222236678899999999998876532 366654
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.1e-26 Score=223.10 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=213.7
Q ss_pred ccceEEEEEccCCC-EEEEEe----cCC----cEEEEEe--cCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC
Q 010801 32 VDIVSAIEFDKTGD-YLAVGD----RGG----RVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (501)
Q Consensus 32 ~~~v~~v~~s~~g~-~latg~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (501)
...+...+|++.|. ++++|+ .|| +|++||+ .+++.+ ....+.+|
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-------------------------~~~~~~~~ 116 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-------------------------AQNSYKVN 116 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-------------------------EEEEEEEC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-------------------------eeeEEEcC
Confidence 45788888988874 666776 467 8999999 776531 23457778
Q ss_pred CcchhhccccccccceeEEEEee------------cCCCCEEEEeeCC------CeEEEEeccccceeeeeccCCCcccc
Q 010801 101 EPEFDYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVS 162 (501)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~------------~~~~~~l~s~s~d------~~i~lw~~~~~~~~~~~~~~~~~~~~ 162 (501)
. ..+..+++.+ .+.+..++.++.+ +.|++||+.++....+
T Consensus 117 ~------------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l---------- 174 (415)
T 2hqs_A 117 K------------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVV---------- 174 (415)
T ss_dssp G------------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEE----------
T ss_pred h------------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEE----------
Confidence 7 4455554431 0125667766654 7999999875432221
Q ss_pred cccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC--
Q 010801 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-- 239 (501)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-- 239 (501)
.+|...+.+++|+|+|+.|+++ .++
T Consensus 175 ----------------------------------------------------~~~~~~v~~~~~Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 175 ----------------------------------------------------HRSPQPLMSPAWSPDGSKLAYVTFESGR 202 (415)
T ss_dssp ----------------------------------------------------EEESSCEEEEEECTTSSEEEEEECTTSS
T ss_pred ----------------------------------------------------eCCCCcceeeEEcCCCCEEEEEEecCCC
Confidence 4677889999999999999987 664
Q ss_pred -eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCCe--EEEEEccCCcccccccceeecccc
Q 010801 240 -RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGF--VRLVDMRQSALCDHSARILRDAAE 315 (501)
Q Consensus 240 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~ 315 (501)
.|++||+.+ ++... +..|...+.+++|+|+| +.|+ +++.++. |++||+.+++. ..+.
T Consensus 203 ~~i~~~d~~t-g~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~---- 263 (415)
T 2hqs_A 203 SALVIQTLAN-GAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVT---- 263 (415)
T ss_dssp CEEEEEETTT-CCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECC----
T ss_pred cEEEEEECCC-CcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCc----
Confidence 999999994 44333 34566789999999999 7666 6666554 99999987643 1222
Q ss_pred cCCCcceeeecccceeEEEEeeCCCEEEEEcC--C--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE
Q 010801 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 316 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.|...+..++|+|||++|+++++ + .|++||+.+ ++ ...+..+...+ ..++
T Consensus 264 ---------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~---------------~~~~ 317 (415)
T 2hqs_A 264 ---------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDAD 317 (415)
T ss_dssp ---------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEE---------------EEEE
T ss_pred ---------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcc---------------cCeE
Confidence 24567899999999999887653 4 677778764 33 33444343322 6899
Q ss_pred EcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc---e-eecccc-
Q 010801 392 VSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ---A-HENSSS- 463 (501)
Q Consensus 392 ~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~iw~~~- 463 (501)
|+|||++|++++.+ ..|++||+.+++. ..+..+. .+..++|+| +++. |++++.++ . .+|+..
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTS
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCC
Confidence 99999999988764 5899999998744 4455554 788999998 7777 77777766 3 555443
Q ss_pred CCcccccccCCCeEEEEEccCCC
Q 010801 464 GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
+....+..+...|.+++|+|...
T Consensus 388 ~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEECCCSSSEEEEEEECCCCC
T ss_pred CcEEEeeCCCCCCcCCccccccc
Confidence 34556678889999999999754
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.2e-25 Score=218.02 Aligned_cols=239 Identities=9% Similarity=0.075 Sum_probs=187.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|+++++++++.|+.|++||+.+++. ...+..|.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~-------- 211 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG-------- 211 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC--------
Confidence 5778999999999999999999999999999986643 35566777
Q ss_pred cccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..+.+++|+ ++++.++++ +.|+.|++||+.+++.....
T Consensus 212 ----~~~~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------- 250 (433)
T 3bws_A 212 ----KWSKILLYD--PIRDLVYCSNWISEDISVIDRKTKLEIRKT----------------------------------- 250 (433)
T ss_dssp ----SSEEEEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEEC-----------------------------------
T ss_pred ----CCeeEEEEc--CCCCEEEEEecCCCcEEEEECCCCcEEEEe-----------------------------------
Confidence 789999998 788877555 48999999999887654332
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--------CCeEEEEECCCCCeeeeeeecC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.+...+.+++|+|+++.++++ . |+.|++||+. .++....
T Consensus 251 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~---- 298 (433)
T 3bws_A 251 ---------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT---- 298 (433)
T ss_dssp ---------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE----
T ss_pred ---------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEee----
Confidence 223458899999999998886 3 7799999998 4444442
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..|...+.+++|+|++..++++++.|+.|++||+.+++.. ..+. +...+.+++|+|+|
T Consensus 299 ----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~--------------~~~~~~~~~~s~dg 356 (433)
T 3bws_A 299 ----IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP--------------VFDKPNTIALSPDG 356 (433)
T ss_dssp ----EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSSEEEEEECTTS
T ss_pred ----ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec--------------CCCCCCeEEEcCCC
Confidence 2355678999999998345677789999999999977543 2222 24678999999999
Q ss_pred CEEEEEcC----------------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 340 QHLLSRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 340 ~~l~~~~~----------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
++|+++.. |.|++||+.+ ++.+..+..+... .+++|+|+|++|++++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISD 419 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEE
Confidence 98887642 4899999986 7777777654332 6899999999998877
Q ss_pred C-CCeEEEEecCC
Q 010801 404 Y-SNLLRIFSHGV 415 (501)
Q Consensus 404 ~-dg~i~iwd~~~ 415 (501)
. |+.|++|+++.
T Consensus 420 ~~d~~i~v~~~~~ 432 (433)
T 3bws_A 420 FLDHQIRVYRRDG 432 (433)
T ss_dssp TTTTEEEEEEETT
T ss_pred CCCCeEEEEEecC
Confidence 5 99999999863
No 128
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.4e-24 Score=204.22 Aligned_cols=269 Identities=10% Similarity=0.048 Sum_probs=192.0
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++|+.++ +++|++..++.....
T Consensus 13 ~~~~~h~------------~~V~~v~fs--~dg~~la~g~~~~-~~iw~~~~~~~~~~~--------------------- 56 (355)
T 3vu4_A 13 VPENHVS------------NPVTDYEFN--QDQSCLILSTLKS-FEIYNVHPVAHIMSQ--------------------- 56 (355)
T ss_dssp ------C------------CCCCEEEEC--TTSSEEEEECSSE-EEEEEETTEEEEEEE---------------------
T ss_pred cccccCC------------CceEEEEEC--CCCCEEEEEcCCE-EEEEecCCcceeeee---------------------
Confidence 4557787 889999998 8999999888765 789998876533211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~ 252 (501)
+...+..+++.++++.++ +| .|++|++||.. .++.
T Consensus 57 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~-~~~~ 93 (355)
T 3vu4_A 57 ------------------------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV-KKQD 93 (355)
T ss_dssp ------------------------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT-TTEE
T ss_pred ------------------------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC-CCcE
Confidence 112466788888888775 45 78999999998 4444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeeccccee
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
+.. +. +...|.+++++++. ++++ .|+.|++||+.++ +.. ..+.. +..
T Consensus 94 ~~~-------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~~ 141 (355)
T 3vu4_A 94 VSR-------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FGG 141 (355)
T ss_dssp EEE-------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EEE
T ss_pred EEE-------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CCc
Confidence 443 22 55689999999864 4443 4789999999886 332 22211 233
Q ss_pred EEEEeeCCCEEEE--Ec-CCcEEEEEeeCCCC---------------c-eeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 332 DIKFANDGQHLLS--RD-YMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 332 ~~~~sp~~~~l~~--~~-~~~i~lwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.+++++ .+++. |+ +|.|++||+++ ++ + +..+.+|...+ ++++|
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~~ 203 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVRL 203 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEEE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEEE
Confidence 455666 56665 33 59999999985 33 2 67788888765 79999
Q ss_pred cCCCcEEEEEeCCCe-EEEEecCCCCcceEEEe-c-ccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc-
Q 010801 393 SGDGLHFATGSYSNL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE- 467 (501)
Q Consensus 393 s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~- 467 (501)
+|+|++|++|+.||+ |+|||+.+++.+ ..+. + |...|.+++|+| ++++ |++++.|+. ++|+......
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~~ 275 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQDN 275 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSCC
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCCc
Confidence 999999999999998 999999998554 6676 5 999999999999 7777 999999999 9995542210
Q ss_pred ---cc---------------------cccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 468 ---LS---------------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 468 ---~~---------------------~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.. .........++|+|+++.|++++.|+ +++|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 276 KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 00 01112336799999999999998555 66664
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=7.9e-25 Score=234.65 Aligned_cols=366 Identities=9% Similarity=0.044 Sum_probs=245.7
Q ss_pred cccccceEEEEEccCCCEEEEEecC------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
..|...+.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------------~~lt~~~- 99 (1045)
T 1k32_A 49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------------KRITYFS- 99 (1045)
T ss_dssp ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------------EECCCCC-
T ss_pred eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------------EEcccCC-
Confidence 3588899999999999999988643 3799999887643 5567777
Q ss_pred chhhccccccccce-------eEEEEeecCCCCEEEEeeCC------CeEEEEeccccceeeeeccCCCcccccccc---
Q 010801 103 EFDYLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENT--- 166 (501)
Q Consensus 103 ~~~~~~~~~~~~~V-------~~v~~~~~~~~~~l~s~s~d------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~--- 166 (501)
..+ ..++|+ |||+.+++++.+ ..|.+|++.+++...+...... .+ .++.
T Consensus 100 -----------~~~~~~~~~~~~~~~S--pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~-~~spG~l 164 (1045)
T 1k32_A 100 -----------GKSTGRRMFTDVAGFD--PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT-HI-LFADGRR 164 (1045)
T ss_dssp -----------EEEETTEECSEEEEEC--TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS-EE-EEETTEE
T ss_pred -----------CcccccccccccccCC--CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc-ee-eeCCCEE
Confidence 666 899998 788866666644 4688888887765443322110 00 0000
Q ss_pred -----------------------------------cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeE
Q 010801 167 -----------------------------------LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 211 (501)
Q Consensus 167 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 211 (501)
..+...+..+.+.++ .+++.+ ..++...+|.++... ...+
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~--~~dg~~~l~~~~~~g--~~~~ 239 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFIT--DIDGFGQIYSTDLDG--KDLR 239 (1045)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEE--CTTSSCEEEEEETTS--CSCE
T ss_pred EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEE--eccCceEEEEEeCCC--Ccce
Confidence 000011111111122 222222 235678888876421 1222
Q ss_pred eecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCC----CCCCCcccceEEEEEe-cCCCcEEEEE
Q 010801 212 VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLAYS 286 (501)
Q Consensus 212 ~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~-p~~~~~l~~~ 286 (501)
.+ ..|. .+...+|+|+|+.++.+.++.|++|++. ..... .+.... .....|...+.+++|+ |+| +.|+++
T Consensus 240 ~l-~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~ 314 (1045)
T 1k32_A 240 KH-TSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFV 314 (1045)
T ss_dssp EC-CCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEE
T ss_pred Ee-cCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEEEE
Confidence 22 3343 4567799999999998888999999985 33332 210000 0011245578999999 999 888887
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc-ceeEEEEeeCCCEEEEEcC-CcEE-EEEeeCCCCcee
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTPVA 363 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~sp~~~~l~~~~~-~~i~-lwd~~~~~~~~~ 363 (501)
+ ++.|.+|++..+... .+.. |.. .+..++|+ ||+.|+.+++ +.+. +||+.. ++ ..
T Consensus 315 ~-~~~i~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~ 372 (1045)
T 1k32_A 315 S-RGQAFIQDVSGTYVL-----KVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AE 372 (1045)
T ss_dssp E-TTEEEEECTTSSBEE-----ECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EE
T ss_pred E-cCEEEEEcCCCCceE-----EccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ce
Confidence 7 889999998876432 1111 334 78999999 9999998765 6777 888863 33 33
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.+.++...+ ..++|+|||++|++++.++.|++||+.+++ ....+..|...+..++|+| +|++
T Consensus 373 ~l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~Sp--DG~~ 434 (1045)
T 1k32_A 373 KFEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISD--NSRF 434 (1045)
T ss_dssp ECCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECT--TSCE
T ss_pred EecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECC--CCCe
Confidence 444443332 689999999999999999999999999884 3456668999999999999 7887
Q ss_pred Cccceeeeecccc----------e-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 444 SSLSNLTRGLYRQ----------A-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 444 ~~~~~l~~~~~~~----------~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
|++++.++ . .+|+.. ........+...+..++|+|||++|++++.
T Consensus 435 -----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 -----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp -----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred -----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 77776644 5 888544 234455677778899999999999998875
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=6.6e-25 Score=197.08 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=136.2
Q ss_pred CCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec---CCCcEEEEEeCCCeEEEEEccCCc
Q 010801 228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
++++++.++ .|+.|++|++...++.... +..|...++.++|+| ++ .+|++++.|++|++||+.+++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc
Confidence 455555553 3899999998655555443 457888888899998 66 899999999999999999987
Q ss_pred ccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE------------EEc-CCcEEEEEeeCCCCceeEee--
Q 010801 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL------------SRD-YMNLKLWDIRMDSTPVATFK-- 366 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~------------~~~-~~~i~lwd~~~~~~~~~~~~-- 366 (501)
.. +.+..|. .+...+.+++|+|+|++++ +|+ |++|++||..+ ++.+..+.
T Consensus 215 ~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~ 279 (356)
T 2w18_A 215 LL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYC 279 (356)
T ss_dssp EE----EEEECCC-------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEEC
T ss_pred EE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEee
Confidence 55 4454311 0124678889999999874 454 48999999986 77665542
Q ss_pred ---ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc-eeeccCCccc
Q 010801 367 ---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRAR 442 (501)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~ 442 (501)
+|.... .+..+ ++.++++|+.|++|+|||+.+++. ..++++|...+.. ++|+| +++
T Consensus 280 ~p~Gh~~~~---------------lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs~vafSP--DG~ 339 (356)
T 2w18_A 280 LPPGQAGRF---------------LEGDV--KDHCAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWSFVKWSG--TDS 339 (356)
T ss_dssp CCTTCCCCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCSE-EEEECCC--CCCCEEEECS--SSS
T ss_pred ccCCCccee---------------Ecccc--CCCEEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEEEEEECC--CCC
Confidence 333211 23333 488999999999999999999954 4889999887664 89999 788
Q ss_pred cCccceeeeecccce-eecc
Q 010801 443 RSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 443 ~~~~~~l~~~~~~~~-~iw~ 461 (501)
+ |++|+.|+. ++|+
T Consensus 340 ~-----LaSGS~D~TIklWd 354 (356)
T 2w18_A 340 H-----LLAGQKDGNIFVYH 354 (356)
T ss_dssp E-----EEEECTTSCEEEEE
T ss_pred E-----EEEEECCCcEEEec
Confidence 8 999999999 9995
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3.5e-25 Score=229.01 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=210.6
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..+.+++|+|||+++++ +.||+|++||+.+++.. ..+.+|...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------~~~~~~~~~--------- 59 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKKIE--------- 59 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTTTT---------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------------EEecccccc---------
Confidence 34788999999998876 68999999999988642 344555400
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC---------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d---------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
...|.+++|+ |||++|++++.+ +.+.+||+.+++...+..
T Consensus 60 ~~~v~~~~~S--pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~----------------------------- 108 (723)
T 1xfd_A 60 SLRAIRYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP----------------------------- 108 (723)
T ss_dssp TTTCSEEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-----------------------------
T ss_pred ccccceEEEC--CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-----------------------------
Confidence 0148999998 899999999764 678899988876422210
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN- 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 262 (501)
...|...+..++|+|||+.|+.+.++.|++||+.. +....+.......
T Consensus 109 ------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 109 ------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGV 157 (723)
T ss_dssp ------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTT
T ss_pred ------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEEecCCCCCc
Confidence 03455568889999999999998668999999984 4444332110000
Q ss_pred -CCCc---------ccceEEEEEecCCCcEEEEEeCCC----------------------------------eEEEEEcc
Q 010801 263 -MDDL---------TEVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMR 298 (501)
Q Consensus 263 -~~~~---------~~~v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~~wd~~ 298 (501)
+.++ ...+.+++|+||| +.|++++.|+ .|++||+.
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 0000 0133789999999 8888887543 68888887
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C-CcEEEEEeeCCCCceeEeecc-cccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLR 372 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~-~~i~lwd~~~~~~~~~~~~~~-~~~~ 372 (501)
+++.. ..+..+. .+..+...+..++|+|||++|++.. + ..|++||+.+ ++....+..+ ...+
T Consensus 237 ~~~~~----~~l~~~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 237 GPTHD----LEMMPPD-------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWL 304 (723)
T ss_dssp SSCCC----EECCCCC-------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCC
T ss_pred CCcee----EEeeCCc-------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEE
Confidence 76421 1111100 0112346789999999999887652 1 5799999975 6655554433 2211
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEE--EeCCC------eEEEEe-cCCCCc-ceEEEecccCcccc-eeeccCCcc
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENRK-PILQAAPRA 441 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~~-~~~~~~~~~ 441 (501)
... ...++|+|||+.|+. ...++ .|++|| ..++.. ....+..+...+.. +.++| ++
T Consensus 305 ~~~-----------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp--dg 371 (723)
T 1xfd_A 305 HRQ-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE--KG 371 (723)
T ss_dssp CCC-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--TT
T ss_pred ecc-----------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--CC
Confidence 000 026899999997775 45667 567777 344420 02333333333333 57888 67
Q ss_pred ccCccceeeeeccc---ce-eecccc--C--Ccccccc---cCCCeEEEEEccCCCEEEEee
Q 010801 442 RRSSLSNLTRGLYR---QA-HENSSS--G--HHELSYN---LSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 442 ~~~~~~~l~~~~~~---~~-~iw~~~--~--~~~~~~~---~~~~i~~~~~sp~~~~la~~~ 492 (501)
+. |+..+.+ +. .+|..+ + ....+.. +...+..++|+|||++|+...
T Consensus 372 ~~-----l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 372 NK-----IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TE-----EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CE-----EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 66 6655544 55 899443 2 1222222 466788999999999988764
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.4e-24 Score=208.42 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=185.5
Q ss_pred CCEEEEEecC------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 44 g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
+..++.++.+ ++|++||+.++.. ..+.+|. ..|.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~ 182 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM 182 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence 6677776654 7999999875432 5567787 8899
Q ss_pred EEEEeecCCCCEEEEeeCCC---eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~---~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
+++|+ |+|++|++++.|+ .|++||+.+++...+
T Consensus 183 ~~~~S--pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------ 218 (415)
T 2hqs_A 183 SPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------ 218 (415)
T ss_dssp EEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred eeEEc--CCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence 99998 8999999999875 999999998765432
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...+.+++|+|||+.|+ ++ .++ .|++||+.+ ++... +..|...+
T Consensus 219 --------------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~~~--------l~~~~~~~ 269 (415)
T 2hqs_A 219 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQIRQ--------VTDGRSNN 269 (415)
T ss_dssp --------------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEEE--------CCCCSSCE
T ss_pred --------------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCEEe--------CcCCCCcc
Confidence 35567899999999999887 55 554 599999984 43332 56677889
Q ss_pred EEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 271 TSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.+++|+|+| +.|++++. ++ .|.+||+.+++.. .+.. |...+..++|+|||++|++++
T Consensus 270 ~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 270 TEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp EEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEE
T ss_pred cceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EEec-------------CCCcccCeEECCCCCEEEEEEC
Confidence 999999999 88887776 45 6777788776421 1111 235688999999999998764
Q ss_pred C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcce
Q 010801 347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG 420 (501)
Q Consensus 347 ~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~ 420 (501)
+ ..|++||+.+ ++. ..+..+. .+ .+++|+|||++|++++.++ .|++||+..+ ..
T Consensus 331 ~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~ 390 (415)
T 2hqs_A 331 NGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FK 390 (415)
T ss_dssp CSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CE
T ss_pred cCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cE
Confidence 2 5899999975 444 3444443 22 6899999999999988876 7999998744 34
Q ss_pred EEEecccCcccceeeccC
Q 010801 421 ITVEAGKNENRKPILQAA 438 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~ 438 (501)
..+..|...+..++|+|.
T Consensus 391 ~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 391 ARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEeeCCCCCCcCCccccc
Confidence 788999999999999985
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=9.4e-24 Score=226.33 Aligned_cols=363 Identities=10% Similarity=0.055 Sum_probs=246.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...+.++.|+++ .++++++.|+.+.||.+..... ....+..|.
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~-------- 245 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT-------- 245 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC--------
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC--------
Confidence 57889999999988 6677788889999998763211 113344443
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCC-CCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 188 (501)
.+..++|+ |+|++|+++ .++.|.+|++....... ....... .......+...+..+.++ +++..++.+
T Consensus 246 -----~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~~-l~~~~~~--~~~~~~~~~~~v~~~~~S~pdG~~la~~ 314 (1045)
T 1k32_A 246 -----DYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIEK-IEIGDLE--SPEDRIISIPSKFAEDFSPLDGDLIAFV 314 (1045)
T ss_dssp -----SSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEEE-CCCCCCC--BCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred -----CcceeeEc--CCCCEEEEE-eCCEEEEecCCceEeee-eccCccc--ccccccccccccceeeecCCCCCEEEEE
Confidence 35677898 788888887 48999999995544332 1110000 000001122345556666 777766655
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCccc-ceEEEEecCCCCEEEEE-cCCeEE-EEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
. ++.+.+|+..... . ..+ ..|.. .+..++|+ +|+.|+.+ .++.+. +|++. .+.... +.+
T Consensus 315 ~---~~~i~~~~~~~~~---~-~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~--------l~~ 376 (1045)
T 1k32_A 315 S---RGQAFIQDVSGTY---V-LKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK--------FEE 376 (1045)
T ss_dssp E---TTEEEEECTTSSB---E-EEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE--------CCC
T ss_pred E---cCEEEEEcCCCCc---e-EEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE--------ecC
Confidence 5 6788889887532 1 222 46666 89999999 99999988 878888 89988 343332 336
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...+..++|+|+| +.|++++.++.|++||+.+++.. ..... |...+..++|+|||++|+++
T Consensus 377 ~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 377 NLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp CCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEE
T ss_pred CccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEE
Confidence 77889999999999 99999999999999999887543 23222 46778999999999999876
Q ss_pred cC-----------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 DY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+. +.|++||+.+ ++ ...+..+.... ..++|+|||++|+.++.++...+|+..
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchh
Confidence 42 3899999975 44 55565554433 579999999999999988777777643
Q ss_pred CCC------------------------------------------cceEEEecccCcccceeeccCCccccCccceeee-
Q 010801 415 VGS------------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR- 451 (501)
Q Consensus 415 ~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~- 451 (501)
... .....+..+...+..+.+++ ++++ +++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~ 574 (1045)
T 1k32_A 502 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSV 574 (1045)
T ss_dssp SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEEC
T ss_pred ccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEe
Confidence 211 11223334555666777776 5654 443
Q ss_pred ----------ecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 452 ----------GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 452 ----------~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+.+.. .+| +....... .....+..++|||||+.|++++.+.+++|+
T Consensus 575 ~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d 634 (1045)
T 1k32_A 575 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 634 (1045)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTCCEE--EEEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cccCcccccccccCCCceEEEEECCCCcEE--EeecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence 122223 555 33222211 112568899999999999999999999986
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=9.7e-24 Score=217.55 Aligned_cols=280 Identities=10% Similarity=0.028 Sum_probs=189.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+ |+ +.++.+ .++.|++||+.+++.....
T Consensus 82 ~~v~~~~~s--pd-~~~~~~-~~~~i~~~d~~~~~~~~l~---------------------------------------- 117 (706)
T 2z3z_A 82 FPSFRTLDA--GR-GLVVLF-TQGGLVGFDMLARKVTYLF---------------------------------------- 117 (706)
T ss_dssp CCCEEEEET--TT-TEEEEE-ETTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred cCceeEEEC--CC-CeEEEE-ECCEEEEEECCCCceEEcc----------------------------------------
Confidence 458999998 67 566655 4599999999887654332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCC----CeeeeeeecCCCCCCCccc-
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTE- 268 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~- 268 (501)
.+...+.+++|+|||+.|+++.++.|++||+... ++...+ ...+..
T Consensus 118 ----------------------~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~-------~~~~~~~ 168 (706)
T 2z3z_A 118 ----------------------DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV-------TIDGTET 168 (706)
T ss_dssp ----------------------CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES-------CSCCBTT
T ss_pred ----------------------CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe-------ccCCCCC
Confidence 3345577789999999999988899999999841 333332 111112
Q ss_pred -------------ceEEEEEecCCCcEEEEEe---------------------------------CCCeEEEEEccCCcc
Q 010801 269 -------------VITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSAL 302 (501)
Q Consensus 269 -------------~v~~v~~~p~~~~~l~~~~---------------------------------~dg~i~~wd~~~~~~ 302 (501)
.+.++.|+||| +.|++++ .+..|.+||+.+++.
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred eEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 25789999999 9898887 446799999988753
Q ss_pred cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC-----cEEEEEeeCCCCceeEeecccccccccc
Q 010801 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
. ..... ..|...+..++|+|||++|+++. ++ .|++||+.+ ++....+.......
T Consensus 248 ~----~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~---- 307 (706)
T 2z3z_A 248 V----YLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH---- 307 (706)
T ss_dssp E----ECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----
T ss_pred E----eeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----
Confidence 2 11111 12456789999999999888753 33 899999975 53333332211110
Q ss_pred ccCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc-eeeccCCccccCccceee-ee
Q 010801 377 DLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLT-RG 452 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~-~~ 452 (501)
.+..+..++|+| ||++|++++.||.++||.++........+..+...+.. ++++| +++. |+ ++
T Consensus 308 ------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~-----l~~~~ 374 (706)
T 2z3z_A 308 ------YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR-----LYFES 374 (706)
T ss_dssp ------CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE-----EEEEE
T ss_pred ------eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE-----EEEEe
Confidence 000014689999 99999999999999999887322444667777777766 68888 5554 44 44
Q ss_pred cccc--e-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeC-----CeEEEEe
Q 010801 453 LYRQ--A-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-----NSLFFHY 500 (501)
Q Consensus 453 ~~~~--~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-----~~~~i~~ 500 (501)
..++ . .+| +..........+...+..++|+|||++|+.++. ..+++|+
T Consensus 375 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred cCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4443 2 666 332222333446678999999999999887653 2388886
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.5e-23 Score=190.26 Aligned_cols=226 Identities=12% Similarity=0.144 Sum_probs=160.0
Q ss_pred EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCC
Q 010801 49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128 (501)
Q Consensus 49 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~ 128 (501)
.++.|++|++||+.+++. ..+..|. ..|.+++|+ |+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~s--pdg~ 54 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNWS--PDGK 54 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEEC--TTSS
T ss_pred CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEEC--CCCC
Confidence 346789999999987753 3445566 889999998 8999
Q ss_pred EEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceee
Q 010801 129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (501)
Q Consensus 129 ~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 207 (501)
+|++++ ++.|++||+.+ ++.....
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~~------------------------------------------------------ 79 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKVD------------------------------------------------------ 79 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEECC------------------------------------------------------
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEec------------------------------------------------------
Confidence 999886 78999999988 6644322
Q ss_pred eeeEeecCCc-ccceEEEEecCCCCEEEEE-cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE
Q 010801 208 RCQKVYPHAH-DFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (501)
Q Consensus 208 ~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 283 (501)
..+ ...+.+++|+|+++.|+++ .+ +...||.++........ +..+ ..+..++|+|++ +.|
T Consensus 80 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l 143 (297)
T 2ojh_A 80 -------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSF 143 (297)
T ss_dssp -------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEE
T ss_pred -------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEE
Confidence 222 4677889999999999887 33 45555554322222221 2222 248899999999 766
Q ss_pred E-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCC
Q 010801 284 A-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST 360 (501)
Q Consensus 284 ~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~ 360 (501)
+ +++.++.+++|++....... ..+ ..|...+..++|+|+|++|+.+. ++.+++|++...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~---~~~-------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGVE---TRL-------------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCCE---EEC-------------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEECCCCceEEEEEECCCCcc---eEc-------------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 5 78889999999875321110 111 12356789999999999887653 58999999975466
Q ss_pred ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----------CeEEEEecCCCCc
Q 010801 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSA 418 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~ 418 (501)
.+..+..+...+ ..++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 208 ~~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 208 SVERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CEEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CcEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 666666555433 689999999999988775 5699999987743
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=7.4e-22 Score=183.92 Aligned_cols=237 Identities=11% Similarity=0.076 Sum_probs=160.9
Q ss_pred EEEccCCCE-EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 38 v~~s~~g~~-latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
..|.+++++ +++++.++.|.+||..+++.. ..+..+. ..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------------~~~ 43 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------------NQITLGY------------DFV 43 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEECCC------------CEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------------eeEEccC------------Ccc
Confidence 456666665 567778899999999877542 3333334 456
Q ss_pred eEEEEeecCCCCEEEEeeC-CCeEEEEeccccce-eeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.++|+ |+++++++++. ++.|.+||..+++. ....
T Consensus 44 -~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------------------- 79 (331)
T 3u4y_A 44 -DTAIT--SDCSNVVVTSDFCQTLVQIETQLEPPKVVAI----------------------------------------- 79 (331)
T ss_dssp -EEEEC--SSSCEEEEEESTTCEEEEEECSSSSCEEEEE-----------------------------------------
T ss_pred -eEEEc--CCCCEEEEEeCCCCeEEEEECCCCceeEEec-----------------------------------------
Confidence 89997 78887777664 89999999988764 2221
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-C--eEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..+.....+++|+|+|++++++ .+ + .|.+||+. .++....+ . .....
T Consensus 80 --------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~ 130 (331)
T 3u4y_A 80 --------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDA 130 (331)
T ss_dssp --------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTE
T ss_pred --------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCc
Confidence 2333344448999999999966 44 3 99999998 44544432 1 22345
Q ss_pred EEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-
Q 010801 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~- 346 (501)
.+++|+|+|..++++...++. |.+|++......... ...+ ........++|+|+|++++++ .
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--------------SGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--------------CSSSSEEEEEECTTSSEEEEEETT
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--------------cCCCCccceEECCCCCEEEEEeCC
Confidence 899999999335555566688 999999864321100 0111 113457899999999976654 3
Q ss_pred CCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCCC
Q 010801 347 YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 417 (501)
++.|++||+.+ ++. +..+..+... ..++|+|||++|+.++ .++.|.+||+.+++
T Consensus 197 ~~~v~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 197 GNSIGILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp TTEEEEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred CCeEEEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 48999999986 676 6666544332 5799999999776554 57889999998873
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=9.5e-22 Score=184.87 Aligned_cols=254 Identities=9% Similarity=0.020 Sum_probs=179.6
Q ss_pred ccccceEEEEEccCCCEEEEEec-------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~-- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------------QAIHND-- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------------EEEEES--
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------------EEEecC--
Confidence 34677899999999999988774 568999998877532 223222
Q ss_pred chhhccccccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..+..++|+ +++++++.+ ..++.|.+||..+++............
T Consensus 89 -----------~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------------- 134 (353)
T 3vgz_A 89 -----------LKPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--------------------- 134 (353)
T ss_dssp -----------SCCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC---------------------
T ss_pred -----------CCcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc---------------------
Confidence 447788998 788865555 567999999999887655432210000
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeec
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
........+.+++|+|+++.++++ .++.|.+||.. ..+....
T Consensus 135 -------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~--- 179 (353)
T 3vgz_A 135 -------------------------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTA--- 179 (353)
T ss_dssp -------------------------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEE---
T ss_pred -------------------------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEE---
Confidence 000111236789999999987765 37899999998 4444443
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
+..+...+.+++|+|++ +.|++++.++.|.+||+.+++.. ..+.... .++...+..++|+|+
T Consensus 180 ----~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---------~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 180 ----IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---------DGKEHFFINISLDTA 241 (353)
T ss_dssp ----ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC---------SSSCCCEEEEEEETT
T ss_pred ----ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC---------CCCCcccceEEECCC
Confidence 23344457889999999 88999999999999999987643 2222100 112346788999999
Q ss_pred CCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCC
Q 010801 339 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 415 (501)
|+++++++ + +.|.+||+.+ ++.+..+..... ..++|+|++++++.++ .++.|.+||+.+
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 99877653 3 8999999986 777777664332 3699999999665555 689999999987
Q ss_pred CC
Q 010801 416 GS 417 (501)
Q Consensus 416 ~~ 417 (501)
++
T Consensus 304 ~~ 305 (353)
T 3vgz_A 304 YK 305 (353)
T ss_dssp TE
T ss_pred Ce
Confidence 73
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=4.9e-22 Score=196.48 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=204.5
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEe--cCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.+++|+|||++|++++.|++|++||+ .+++ ....+..+
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g----------- 221 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG----------- 221 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence 3889999999999999999999999999 5443 23444432
Q ss_pred cccceeEEEEeecC----CCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 112 ~~~~V~~v~~~~~~----~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+..++|+ | +|+++++++ .+++|.+||..++++..........
T Consensus 222 --~~p~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~--------------------------- 270 (543)
T 1nir_A 222 --IEARSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--------------------------- 270 (543)
T ss_dssp --SEEEEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC---------------------------
T ss_pred --CCcceEEeC--CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc---------------------------
Confidence 557899997 7 899999987 5899999999988766554211000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCc-ccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.. .. .-| ...+.++.++|++..+++ . .++.|.+||+...+. +.... +
T Consensus 271 --------------~~-------~~---~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~~~~-----i 320 (543)
T 1nir_A 271 --------------VD-------TQ---TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTS-----I 320 (543)
T ss_dssp --------------SS-------SC---CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CEEEE-----E
T ss_pred --------------cC-------cc---ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ceeEE-----e
Confidence 00 00 012 337889999998777655 4 899999999984332 22111 1
Q ss_pred CCcccceEEEEEecCCCcEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~ 341 (501)
.+...+.++.|+|+| ++|+++ ..+++|.+||+.++++. ..+.. .. ..|.+....+ ++|+ +.+
T Consensus 321 -~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~-g~--------~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 321 -GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDV-GK--------TPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp -ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEEC-SS--------SBCCTTCEEE-EETTTEEE
T ss_pred -ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----Eeecc-CC--------CCCCCCCccc-CCCCCccE
Confidence 234567889999999 766554 56899999999998654 33332 00 0133323333 5777 666
Q ss_pred EEEEc--CCcEEEEEeeCC------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-------CCC
Q 010801 342 LLSRD--YMNLKLWDIRMD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSN 406 (501)
Q Consensus 342 l~~~~--~~~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg 406 (501)
++++. +++|.+||+.+. .+.++++.++.... ..++++|++++|++++ .++
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEecCCCCCcccCc
Confidence 67764 599999999752 57788888876543 5799999999999987 277
Q ss_pred eEEEEecCCCCcceEEE--------ecccCcccceeeccCCccccCccceeeee-----cccce-eecccc
Q 010801 407 LLRIFSHGVGSAGGITV--------EAGKNENRKPILQAAPRARRSSLSNLTRG-----LYRQA-HENSSS 463 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-~iw~~~ 463 (501)
+|.|||+.+++.....+ ..+...+..+.|++ +|+. +..+ +.++. .+|+..
T Consensus 450 ~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~g~~-----~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 450 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK--RGDE-----VWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp CEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS--SSSE-----EEEEEECCTTSCCEEEEEETT
T ss_pred eEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC--CCCE-----EEEEeecCCCCCCeEEEEECC
Confidence 99999999987654554 35577888999998 5555 3332 23566 888444
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1e-21 Score=203.55 Aligned_cols=305 Identities=10% Similarity=0.018 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeC-CC-----eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~-d~-----~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|..++|+ |||++|++++. |+ .|++||+.+++........... ++...+
T Consensus 37 ~~~~~~~~S--pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~--------------------~~~~~~-- 92 (741)
T 2ecf_A 37 PTLMKPKVA--PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL--------------------PGTETL-- 92 (741)
T ss_dssp CCCEEEEEC--TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred CCCCCceEe--cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc--------------------cccccc--
Confidence 569999998 89999999997 88 9999999998766554221000 000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCC--eeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 265 (501)
..+... .+.... ......+.+++|+|||+.|+++.++.|++||+..+. .... +..
T Consensus 93 ------------~~~~~~-~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~--------l~~ 149 (741)
T 2ecf_A 93 ------------SDEEKA-RRERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ--------LTH 149 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB--------CCC
T ss_pred ------------cchhhh-hhhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE--------ccc
Confidence 000000 000000 011134788999999999999855999999998441 3322 556
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec--------ccceeEEEEee
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI--------IASISDIKFAN 337 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~i~~~~~sp 337 (501)
+...+..++|+|+| +.|++++ ++.|++||+.+++.. ++...+. .....++ ...+..++|+|
T Consensus 150 ~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~-----~~~~~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 150 GEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGS-----TTIGNGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp SSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCC-----SSEEESCCCHHHHHHSCCCCSEEECT
T ss_pred CCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCc-----cceeccccceeeeeccccccceEECC
Confidence 77889999999999 9888887 569999999887532 1111100 0000010 11257899999
Q ss_pred CCCEEEEEc-CC---------------------------------cEEEEEeeCCCCceeEee--ccccccccccccCCC
Q 010801 338 DGQHLLSRD-YM---------------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNN 381 (501)
Q Consensus 338 ~~~~l~~~~-~~---------------------------------~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 381 (501)
||++|++++ ++ .|++||+.+.++...... .+...
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------- 288 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------- 288 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE----------
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE----------
Confidence 999998764 33 778888763033322221 12222
Q ss_pred CCcceeeEEEEcCCCcEEEEEeC-----CCeEEEEecCCCCcceEEEecccC----cccceeeccCCccccCccceeeee
Q 010801 382 DSIFDKFECSVSGDGLHFATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRG 452 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~~ 452 (501)
+..++| |||++|+.++. +..|++||+.+++.. ..+..+.. .+..++|+| ++++ ++++
T Consensus 289 -----~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~ 354 (741)
T 2ecf_A 289 -----LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD--DGSI-----LWSS 354 (741)
T ss_dssp -----EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT--TSCE-----EEEE
T ss_pred -----EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC--CCeE-----EEEe
Confidence 268999 99999987654 578999999988543 44444443 456889988 6667 8888
Q ss_pred cccce-eeccc--cCCcccccccCCCeEEE-EEccCCCEEEEee-CC---eEEEEe
Q 010801 453 LYRQA-HENSS--SGHHELSYNLSSKLLHL-AWHPTTNLIACAN-GN---SLFFHY 500 (501)
Q Consensus 453 ~~~~~-~iw~~--~~~~~~~~~~~~~i~~~-~~sp~~~~la~~~-~~---~~~i~~ 500 (501)
+.++. .+|.. ......+..+...|..+ +|+|+++.|++.+ .+ .+.||.
T Consensus 355 ~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 355 ERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 88887 88832 22245556677788887 5999999876544 44 566774
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=9.3e-21 Score=177.24 Aligned_cols=279 Identities=14% Similarity=0.113 Sum_probs=177.9
Q ss_pred cccccceEEEEEccCCCEEEEEecC-CcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+.|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +....+..+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~----- 83 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP----- 83 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS-----
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC-----
Confidence 4577889999999999999988876 999999997 4421 122333322
Q ss_pred hccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..+..++|+ |+++++++++ .++.|.+||+.++....
T Consensus 84 --------~~~~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~--------------------------------- 120 (343)
T 1ri6_A 84 --------GSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVG--------------------------------- 120 (343)
T ss_dssp --------SCCSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEE---------------------------------
T ss_pred --------CCCcEEEEc--CCCCEEEEEecCCCeEEEEECCCCcccc---------------------------------
Confidence 457899997 7888887776 48899999995332111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeee--ecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~ 260 (501)
....+ .....+.+++|+|+++.++++ .++.|.+||+...+...... ..
T Consensus 121 ------------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 172 (343)
T 1ri6_A 121 ------------------------VVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV-- 172 (343)
T ss_dssp ------------------------EEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--
T ss_pred ------------------------ccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc--
Confidence 11111 122357889999999977765 79999999998534332211 00
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.......+..++|+|++ ++++++ ..++.|.+||+.. ++.. ....... .+.. ......+..++|+|
T Consensus 173 --~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 173 --TTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADIHITP 240 (343)
T ss_dssp --ECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEEEECT
T ss_pred --ccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccceEECC
Confidence 11123467899999999 765544 4789999999964 3211 0011111 0000 00123567899999
Q ss_pred CCCEEEEE-c-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEE
Q 010801 338 DGQHLLSR-D-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIF 411 (501)
Q Consensus 338 ~~~~l~~~-~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iw 411 (501)
+|++|+++ . ++.|++||+.... +.+..+..+... ..++|+|+|++|++++ .++.|.+|
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEE
Confidence 99988754 3 5999999997312 233334333321 5899999999888887 58999999
Q ss_pred ecC--CCCcc-eEEEecccCcccceeecc
Q 010801 412 SHG--VGSAG-GITVEAGKNENRKPILQA 437 (501)
Q Consensus 412 d~~--~~~~~-~~~~~~~~~~v~~~~~~~ 437 (501)
+++ ++... ...+... .....+++.+
T Consensus 305 ~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 305 EIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred EEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 654 44221 2233332 3344555655
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.7e-21 Score=179.23 Aligned_cols=276 Identities=11% Similarity=0.100 Sum_probs=170.7
Q ss_pred cceeEEEEeecCCCCEEEEeeCC-CeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d-~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+.+++|+ |++++|++++.+ +.|++|++. +++.....
T Consensus 38 ~~~~~~~~s--pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------------- 78 (343)
T 1ri6_A 38 GQVQPMVVS--PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------------------------------- 78 (343)
T ss_dssp SCCCCEEEC--TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------------------------------------
T ss_pred CCCceEEEC--CCCCEEEEeecCCCeEEEEEecCCCCceeecc-------------------------------------
Confidence 678999997 889988888876 999999997 44432211
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+ ..+. .+..++|+|+++.++++ .++.|.+||+. .+....... .+. ...
T Consensus 79 ---------------------~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~ 129 (343)
T 1ri6_A 79 ---------------------ES-ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLD 129 (343)
T ss_dssp ---------------------EE-ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCT
T ss_pred ---------------------cc-ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCC
Confidence 11 1222 67889999999987665 58999999995 222211110 022 223
Q ss_pred ceEEEEEecCCCcEEEEEe-CCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.+.+++|+|++ +.+++++ .++.|.+||+.+ ++........... .....+..++|+|+++++++++
T Consensus 130 ~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 130 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEE
T ss_pred CceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEe
Confidence 57889999999 7777776 899999999987 4322100001111 0124678899999999776543
Q ss_pred --CCcEEEEEeeCC-CCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCCCeEEEEecCC--CC-
Q 010801 347 --YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV--GS- 417 (501)
Q Consensus 347 --~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~--~~- 417 (501)
++.|++|++... ++. ...+....... .....+..++|+|+|++|+ ++..++.|++|++.. +.
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 499999999531 222 22222111000 0000125799999998877 455799999999983 32
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeec-ccce-eeccccCC---cc--cccccCCCeEEEEEccCCCE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HENSSSGH---HE--LSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~iw~~~~~---~~--~~~~~~~~i~~~~~sp~~~~ 487 (501)
.....+..+.. +..++++| ++++ |+.++ .++. .+|..+.. .. ..........+++|.|+.+.
T Consensus 268 ~~~~~~~~~~~-~~~~~~s~--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 268 SKEGFQPTETQ-PRGFNVDH--SGKY-----LIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEECSSS-CCCEEECT--TSSE-----EEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred EEeeeecCCCc-cceEEECC--CCCE-----EEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence 22334444444 88899998 6665 55555 5677 99944311 11 11122244567888877654
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=205.14 Aligned_cols=318 Identities=11% Similarity=0.049 Sum_probs=199.5
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
.++|+|||++++++ .|++|++||+.+++.. ..+.+|... ...|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~~ 62 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVNA 62 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTTC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccce
Confidence 78999999766655 6999999999987542 333334300 0148
Q ss_pred eEEEEeecCCCCEEEEeeC---------CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~---------d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+++|+ |||++|++++. ++.|++||+.+++.....
T Consensus 63 ~~~~~S--pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~---------------------------------- 106 (719)
T 1z68_A 63 SNYGLS--PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN---------------------------------- 106 (719)
T ss_dssp SEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS----------------------------------
T ss_pred eeEEEC--CCCCeEEEEecCceeEEeecceEEEEEECCCCccccce----------------------------------
Confidence 899998 89999999876 789999999887642100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.....+..++|+|||+.|+.+.++.|++|++.+ +....+. ..++.
T Consensus 107 ----------------------------~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~-g~~~~l~------~~~~~ 151 (719)
T 1z68_A 107 ----------------------------ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPG-DPPFQIT------FNGRE 151 (719)
T ss_dssp ----------------------------CCCSSBCCEEECSSTTCEEEEETTEEEEESSTT-SCCEECC------CCCBT
T ss_pred ----------------------------ecCcccccceECCCCCEEEEEECCeEEEEeCCC-CCcEEEe------cCCCc
Confidence 001346779999999999998788999999984 3333321 12222
Q ss_pred cc-----------------eEEEEEecCCCcEEEEEeCCC----------------------------------eEEEEE
Q 010801 268 EV-----------------ITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVD 296 (501)
Q Consensus 268 ~~-----------------v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~~wd 296 (501)
.. ..+++|+||| +.|++++.|. .|++||
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 21 2489999999 9999887652 788888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-----CcEEEEE----eeCCCCceeEe--
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF-- 365 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-----~~i~lwd----~~~~~~~~~~~-- 365 (501)
+.+++... .... .....+.+|...+..++|+||++++++..+ ..|.+|| +.+ ++....+
T Consensus 231 ~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~ 300 (719)
T 1z68_A 231 TTYPAYVG----PQEV-----PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEH 300 (719)
T ss_dssp SSCHHHHC----CEEC-----CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEE
T ss_pred CCCCCccc----eeEc-----cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEec
Confidence 88764310 0000 000012345678999999999887776432 3488888 654 4443333
Q ss_pred --eccccccccccccCCCCCcceeeEEEEcCCCcEEEE--EeCCC--eEEEEecCCCCcceEEEecccCcccceeeccCC
Q 010801 366 --KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (501)
Q Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 439 (501)
.++...+.. .. ...+.|+|||+.|+. ...+| .|.+|++.+++ ...+..+...+..+.+. .
T Consensus 301 ~~~~~~~~~~~--------~~--~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d- 366 (719)
T 1z68_A 301 IEESRTGWAGG--------FF--VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-T- 366 (719)
T ss_dssp EEECSSSCSSS--------SS--CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-C-
T ss_pred ccccCCceEcc--------cc--CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-e-
Confidence 234433210 00 016899999996554 44555 56777776654 35555555556666666 2
Q ss_pred ccccCccceeeeecc----cce-eecccc---CC--ccccc----ccCCCeEEEEEccCCCEEEEee
Q 010801 440 RARRSSLSNLTRGLY----RQA-HENSSS---GH--HELSY----NLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 440 ~~~~~~~~~l~~~~~----~~~-~iw~~~---~~--~~~~~----~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+.+ ++++.. ++. .+|... +. ...+. ++...+..++|+|++++|+..+
T Consensus 367 ~~~i-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 367 QDSL-----FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp SSEE-----EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred CCEE-----EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 3333 334433 355 888432 11 11111 2456778899999999888543
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1e-20 Score=177.52 Aligned_cols=267 Identities=11% Similarity=0.123 Sum_probs=170.2
Q ss_pred cccccceEEEEEccCCCEEEEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..+...+..++|+|||+ |++++. ++.|.+|++.+++. +.+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~---- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG---- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES----
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC----
Confidence 34567788999999999 555554 68999999976632 2334444455
Q ss_pred hccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..+..++|+ |++++|++++ .++.|.+|++. ++............
T Consensus 86 --------~~p~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------------------------ 131 (347)
T 3hfq_A 86 --------TPPAYVAVD--EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------------------------ 131 (347)
T ss_dssp --------CCCSEEEEE--TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC------------------------
T ss_pred --------CCCEEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC------------------------
Confidence 678899998 8999888887 78999999995 33322211100000
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+. ...+...+.+++|+|+|+++++. .++.|.+|++...+.........
T Consensus 132 -----------------------~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--- 182 (347)
T 3hfq_A 132 -----------------------HGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT--- 182 (347)
T ss_dssp -----------------------CCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE---
T ss_pred -----------------------CCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE---
Confidence 0000 01234568899999999966666 78999999998433322211000
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
. .....+..++|+|+| +++++ ...++.|.+|++.. ++.. ....+.. .+.. +. ....+..++|+|||
T Consensus 183 ~-~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~---~~~~---~~-~~~~~~~i~~spdG 251 (347)
T 3hfq_A 183 M-EAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKT---IPAD---YT-AHNGAAAIRLSHDG 251 (347)
T ss_dssp C-CTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---SCTT---CC-SCCEEEEEEECTTS
T ss_pred c-CCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--Eeeeeee---cCCC---CC-CCCcceeEEECCCC
Confidence 1 122356789999999 75554 56689999999875 3221 0111111 0000 00 01358889999999
Q ss_pred CEEEEE-c-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 340 QHLLSR-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 340 ~~l~~~-~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
++|+++ . ++.|.+|++...+ +.+..+..+.... ..++|+|||++|++++. ++.|.+|+++
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 988544 3 5999999997322 2333444332222 58999999998888776 4899999554
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.2e-21 Score=197.86 Aligned_cols=280 Identities=8% Similarity=0.051 Sum_probs=187.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+++|||| ++++.+ .++.|++||+.+++. ..+..+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~----------- 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN----------- 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence 56999999999 666665 469999999987643 2344455
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccc-----cceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+.+++|+ |+|++|+++ .|+.|++|++.+ ++............
T Consensus 121 -~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~--------------------------- 169 (706)
T 2z3z_A 121 -EETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL--------------------------- 169 (706)
T ss_dssp -TCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE---------------------------
T ss_pred -ccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe---------------------------
Confidence 668899998 899999985 689999999988 66544321110000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-----------------------------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------------------------- 237 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----------------------------- 237 (501)
.+-. . .+ ..+...+.+++|+|||+.|+++ .
T Consensus 170 ----------~~g~-------~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 170 ----------VYGQ-------A--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp ----------EESS-------C--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ----------Eccc-------c--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 0000 0 00 2333456789999999999886 2
Q ss_pred ----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-----eEEEEEccCCcccccccc
Q 010801 238 ----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 238 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~ 308 (501)
+..|++||+. .+....+. ....|...+.+++|+|+| +.|++++.++ .|.+||+.+++... .
T Consensus 230 ~~~~~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~ 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---T 299 (706)
T ss_dssp SCCCEEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---E
T ss_pred CCCCeeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---E
Confidence 2579999998 44433321 123566789999999999 8888887775 89999998873221 1
Q ss_pred eeecccccCCCcceeeecccceeEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
....... .....+..++|+| ||+++++++ ++.++||+++..++.+..+..+...+
T Consensus 300 ~~~~~~~---------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v------------- 357 (706)
T 2z3z_A 300 LFVETDK---------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV------------- 357 (706)
T ss_dssp EEEEECS---------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE-------------
T ss_pred EEEccCC---------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE-------------
Confidence 2211000 0011346789999 999988875 48899998874466666776554432
Q ss_pred eeeE-EEEcCCCcEEEEEeC-CC----eEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 386 DKFE-CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 386 ~~~~-~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.. ++|+|+++.|+.++. ++ .|+.||+.++. ...+. +...+..++++| +++.
T Consensus 358 --~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~ 414 (706)
T 2z3z_A 358 --TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA 414 (706)
T ss_dssp --EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred --EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence 34 799999988765554 44 67777777653 23333 566788899998 6665
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.6e-21 Score=176.87 Aligned_cols=235 Identities=12% Similarity=0.120 Sum_probs=165.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecC-CcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|...|.+++|+|+|++||+++ ++.|++||+.+ ++.. ....+|.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~---------------------------~~~~~~~----- 83 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE---------------------------KVDTGFA----- 83 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---------------------------ECCCTTC-----
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---------------------------Eeccccc-----
Confidence 456889999999999999999986 78999999987 6531 2333442
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee--CCCeEEEEec--cccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s--~d~~i~lw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
...|.+++|+ |++++|++++ .++..+||.+ .++....+
T Consensus 84 ------~~~~~~~~~s--pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------ 125 (297)
T 2ojh_A 84 ------TICNNDHGIS--PDGALYAISDKVEFGKSAIYLLPSTGGTPRLM------------------------------ 125 (297)
T ss_dssp ------CCBCSCCEEC--TTSSEEEEEECTTTSSCEEEEEETTCCCCEEC------------------------------
T ss_pred ------cccccceEEC--CCCCEEEEEEeCCCCcceEEEEECCCCceEEe------------------------------
Confidence 1668999998 8999999998 4455666654 33331111
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.. ...+..++|+|+++.|+ ++ .++.+++|+++........
T Consensus 126 --------------------------------~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----- 167 (297)
T 2ojh_A 126 --------------------------------TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----- 167 (297)
T ss_dssp --------------------------------CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred --------------------------------ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-----
Confidence 12 22478899999999887 56 8999999986533322222
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+..+...+.+++|+|++ +.|++++ .++.+++|++...... ...+. .|...+..++|+|+|
T Consensus 168 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-------------~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 168 --LTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSS---VERIT-------------DSAYGDWFPHPSPSG 228 (297)
T ss_dssp --CCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC---EEECC-------------CCSEEEEEEEECTTS
T ss_pred --cccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCC---cEEEe-------------cCCcccCCeEECCCC
Confidence 45677789999999999 7776655 5899999988632111 02222 234578899999999
Q ss_pred CEEEEEc-C-----------CcEEEEEeeCCCCce--eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 340 QHLLSRD-Y-----------MNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 340 ~~l~~~~-~-----------~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
++|++++ + +.|++||+.. ++.. ..+.+|...+ ..++|+|++++|++++.+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEec
Confidence 9988763 2 4599999975 5443 3333555443 579999999999888765
Q ss_pred C
Q 010801 406 N 406 (501)
Q Consensus 406 g 406 (501)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.6e-20 Score=173.42 Aligned_cols=253 Identities=10% Similarity=0.093 Sum_probs=168.1
Q ss_pred ccceEEEEEccCCCEEEEEec-CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
...+ +++|+|+|++|++++. ++.|.+||..+++. ....+..+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------~~~~~~~~~--------- 83 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------KVVAIQEGQ--------- 83 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------EEEEEEECS---------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------eEEecccCC---------
Confidence 4456 9999999997777665 88999999987753 123444454
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCC-C--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTND-K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d-~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
....+++|+ |++++++++..+ + .|.+||+.+++.....
T Consensus 84 ---~~~~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~---------------------------------- 124 (331)
T 3u4y_A 84 ---SSMADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI---------------------------------- 124 (331)
T ss_dssp ---SCCCCEEEC--TTSSEEEECCCSSSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred ---CCccceEEC--CCCCEEEEecCCCCcccEEEEECCCCCeEEEE----------------------------------
Confidence 445559997 899998855554 3 8999999887754432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCe-EEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR-INLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~-i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.......+++|+|+|+++++ + .++. |.+|++...+...... . ...
T Consensus 125 ----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~ 172 (331)
T 3u4y_A 125 ----------------------------PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFI 172 (331)
T ss_dssp ----------------------------ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEE
T ss_pred ----------------------------ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccc
Confidence 12234578999999986655 4 6677 9999998544332210 0 011
Q ss_pred CcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.....+..++|+|+| +++ +++..++.|.+||+.+++... ....+.. ...+..++|+|||++|+
T Consensus 173 ~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 173 SGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEE
T ss_pred cCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEE
Confidence 233457899999999 755 555568999999998876410 0122222 25678899999999877
Q ss_pred EEc--CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCC
Q 010801 344 SRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 416 (501)
++. ++.|.+||+.+ ++. +..+...-... .........++|+|||++|++++ .++.|.+||+...
T Consensus 237 v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 653 38899999975 554 33332220000 00111114589999999886555 4679999999864
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.4e-21 Score=200.34 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=186.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.+++|+ |+|+++++ +.||+|++||+.+++.....
T Consensus 17 ~~~~~~~~s--pdg~~~~~-~~dg~i~~~d~~~g~~~~~~---------------------------------------- 53 (723)
T 1xfd_A 17 IHDPEAKWI--SDTEFIYR-EQKGTVRLWNVETNTSTVLI---------------------------------------- 53 (723)
T ss_dssp CCCCCCCBS--SSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred ccccccEEc--CCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence 447788998 78887665 78999999999988755433
Q ss_pred cceEEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
..|.. .|.+++|+|||++|+++ .+ +.+++||+.++ +...+
T Consensus 54 ---------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l----- 106 (723)
T 1xfd_A 54 ---------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSL----- 106 (723)
T ss_dssp ---------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEEC-----
T ss_pred ---------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-ceEec-----
Confidence 23332 48899999999999987 53 78899999844 33221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc---------cee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---------SIS 331 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~ 331 (501)
.....|...+..++|+|+| +.|++++. +.|++||+.+++.. ++...+.. ...+.++.. .+.
T Consensus 107 ~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~----~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKE----GVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBT----TTEEEEECCHHHHHTTSSSSE
T ss_pred cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCC----CceECcccceeEEEEeccCcc
Confidence 1234455568899999999 88988876 79999999887543 22221000 000111211 347
Q ss_pred EEEEeeCCCEEEEEc-C-C---------------------------------cEEEEEeeCCCCceeEeecccccccccc
Q 010801 332 DIKFANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
+++|+|||++|++++ + + .|++||+.+ ++....+..+.....
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~--- 252 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM--- 252 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---
Confidence 899999999998764 2 1 678888764 444444443311000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCCcceEEEe-cccCccc----ceeeccCCccccCccc
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVE-AGKNENR----KPILQAAPRARRSSLS 447 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~-~~~~~v~----~~~~~~~~~~~~~~~~ 447 (501)
....+..++|+|||++|++.+. +..|++||+.+++.. ..+. .+...+. .++|+| +|+.
T Consensus 253 ------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~---- 319 (723)
T 1xfd_A 253 ------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSK--DGRK---- 319 (723)
T ss_dssp ------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECT--TSCS----
T ss_pred ------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-EEEEeccCCEEeccCCCceEcC--CCCe----
Confidence 0011268999999999877653 357999999988544 3333 3444443 788888 6765
Q ss_pred eeee--ecccc----e-eec--c--ccCC---cccccccCCCeEE-EEEccCCCEEEEee-C---CeEEEEe
Q 010801 448 NLTR--GLYRQ----A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACAN-G---NSLFFHY 500 (501)
Q Consensus 448 ~l~~--~~~~~----~-~iw--~--~~~~---~~~~~~~~~~i~~-~~~sp~~~~la~~~-~---~~~~i~~ 500 (501)
|+. +..++ . .+| + .++. ...+......+.. ++|+|||+.|+..+ + ..+.+|.
T Consensus 320 -l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 320 -FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 554 44555 3 555 4 2223 3334434445555 69999999998665 3 3466764
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=2.5e-20 Score=187.43 Aligned_cols=257 Identities=8% Similarity=-0.020 Sum_probs=182.5
Q ss_pred cceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+|++++|+ |||++|++++. ||+++||++.+++...+.
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 669999998 79999999886 999999998666543321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c---CCeEEEEECCC--CCeeeeeeecCCCCCCCc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 266 (501)
..+...+..++|+|| ++++++ . +....+|.++. .+.... +...
T Consensus 61 ----------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~--------l~~~ 109 (582)
T 3o4h_A 61 ----------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR--------LEAV 109 (582)
T ss_dssp ----------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE--------CTTS
T ss_pred ----------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc--------ccCC
Confidence 233357889999999 677766 4 45566665543 232222 1111
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~- 345 (501)
..+...+|+|++...+++.+.++.+.+||+.+++.. ++... .. .+++|+|||++|+++
T Consensus 110 -~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 110 -KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp -CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEE
T ss_pred -CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEE
Confidence 123456888887444444455555669999887542 22222 12 889999999999965
Q ss_pred cC----CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC--eEEEEecCCCCcc
Q 010801 346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG 419 (501)
Q Consensus 346 ~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~ 419 (501)
.+ ..|++||+.+ ++. ..+..+...+ ..++|||||++|+++..++ .|++||+++++..
T Consensus 169 ~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 33 6799999874 443 4566665543 6899999999999888888 8999999987544
Q ss_pred eEEEecccCccccee--------eccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEE
Q 010801 420 GITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIAC 490 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 490 (501)
.+..|...+..++ ++| +|++ +++++.++. .+|.. +.... .....|.+++|+ +++++++
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~-g~~~~--~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 232 --DLELPSKDFSSYRPTAITWLGYLP--DGRL-----AVVARREGRSAVFID-GERVE--APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp --ECCCSCSHHHHHCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEET-TEEEC--CCSSEEEEEEEE-TTEEEEE
T ss_pred --EccCCCcChhhhhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEE-CCeec--cCCCceEEEEec-CCEEEEE
Confidence 7778888888888 998 6677 888999999 99976 22221 344678899999 9999887
Q ss_pred eeC
Q 010801 491 ANG 493 (501)
Q Consensus 491 ~~~ 493 (501)
++.
T Consensus 299 ~s~ 301 (582)
T 3o4h_A 299 HTS 301 (582)
T ss_dssp EEE
T ss_pred EcC
Confidence 764
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=7.2e-21 Score=191.43 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=179.2
Q ss_pred ccceEEEEEccCCCEEEEEec-CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+|++++|+|||++||+++. ||+++||++.+++. ..+..|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~--------- 63 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP--------- 63 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence 567999999999999999886 99999999876643 2333333
Q ss_pred ccccceeEEEEeecCCCCEEEEeeC---CCeEEEEeccc---cceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...+..++|+ || +.+++++. +...++|.+.. +......
T Consensus 64 --~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~------------------------------- 107 (582)
T 3o4h_A 64 --INSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE------------------------------- 107 (582)
T ss_dssp --CSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT-------------------------------
T ss_pred --ccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccccc-------------------------------
Confidence 0468999998 66 66666654 45566665543 1111100
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE--EEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+ .+...+|+|+|+. ++++.++.+.+||+. +++...+.
T Consensus 108 ------------------------------~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~------ 148 (582)
T 3o4h_A 108 ------------------------------AVK--PMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA------ 148 (582)
T ss_dssp ------------------------------TSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE------
T ss_pred ------------------------------CCC--CceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee------
Confidence 111 2234577787753 344555556699998 44444331
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCC----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
.+.. .+++|+||| +.|++++.+ +.|++||+.+++.. .+.. |...+..++|+||
T Consensus 149 --~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~-------------~~~~~~~~~~SpD 205 (582)
T 3o4h_A 149 --RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDS-------------GEGSFSSASISPG 205 (582)
T ss_dssp --EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----EECC-------------SSCEEEEEEECTT
T ss_pred --cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----Eeec-------------CCCccccceECCC
Confidence 1222 789999999 999988777 78999999887532 2222 4567899999999
Q ss_pred CCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|++|++++ ++ .|++||+.+ ++.. .+..+...+.... ..+....+|+|||.++++++.||.++||++
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred CCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 99999664 36 899999975 5555 5555544331000 000012339999999999999999999999
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce--eec
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN 460 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~iw 460 (501)
++.. ......+..++++ ++++ +++++.+.. .+|
T Consensus 275 g~~~----~~~~~~v~~~~~s---dg~~-----l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 275 GERV----EAPQGNHGRVVLW---RGKL-----VTSHTSLSTPPRIV 309 (582)
T ss_dssp TEEE----CCCSSEEEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred CCee----ccCCCceEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence 5222 2344567777777 5566 677666655 565
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.2e-19 Score=168.29 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=136.6
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+..++|+ |+|+ |++++. ++.|++|++.+++.....
T Consensus 40 ~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------------------------------- 79 (347)
T 3hfq_A 40 QNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------------------------------- 79 (347)
T ss_dssp SCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEE-------------------------------------
T ss_pred CCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEee-------------------------------------
Confidence 557889997 7888 555543 689999999766533221
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCC----CC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD 264 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~ 264 (501)
.+ ..+...+..++|+|+|++|+++ .++.|.+|++...+............ ..
T Consensus 80 ---------------------~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 80 ---------------------TV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp ---------------------EE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred ---------------------ee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 10 2345677889999999988775 68999999996443322211111000 01
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.....+.+++|+|+| +++++...++.|.+||+. +++... ...+.. ........++|+|||++|+
T Consensus 138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~------------~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTM------------EAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEE--EEEEEC------------CTTCCEEEEEECTTSSEEE
T ss_pred ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEc------------CCCCCCceEEECCCCCEEE
Confidence 123458899999999 777776778999999998 443211 011111 0023567899999999777
Q ss_pred EE-c-CCcEEEEEeeCC-CCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE-EEEeCCCeEEEEecCC
Q 010801 344 SR-D-YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGV 415 (501)
Q Consensus 344 ~~-~-~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~~ 415 (501)
++ . ++.|++|++... ++. +..+....... . ....+..++|+|||++| ++...++.|.+|++..
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~---~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY------T---AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC------C---SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC------C---CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 65 3 489999999742 222 12222211100 0 00112689999999977 5566789999999973
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=8.9e-20 Score=188.41 Aligned_cols=325 Identities=10% Similarity=0.048 Sum_probs=195.3
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....+++|+|||++|+++ ||+|++||+.+++.. ..+.+|... ..
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------~~~~~~~~~-------~~ 60 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------VFLENSTFD-------EF 60 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------EEECTTTTT-------TC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------EEEechhhh-------hh
Confidence 346689999999999986 899999999988642 445666510 00
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC---------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d---------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
......++|| |||++|+.++.+ +.+.+||+.+++...+
T Consensus 61 ~~~~~~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------- 107 (740)
T 4a5s_A 61 GHSINDYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------- 107 (740)
T ss_dssp CSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------------
T ss_pred cccccceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-------------------------------
Confidence 0123457887 899999999876 4556888887764332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...+...+|||||+.|+.+.++.|++|++.. +...++. .
T Consensus 108 -------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-~~~~~lt------~ 149 (740)
T 4a5s_A 108 -------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRIT------W 149 (740)
T ss_dssp -------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECC------S
T ss_pred -------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCC-CceEEEc------C
Confidence 3556678999999999999998788999999984 4333321 2
Q ss_pred CCcccc-----------------eEEEEEecCCCcEEEEEeCCCe-E---------------------------------
Q 010801 264 DDLTEV-----------------ITSAEFHPIYCNLLAYSSSRGF-V--------------------------------- 292 (501)
Q Consensus 264 ~~~~~~-----------------v~~v~~~p~~~~~l~~~~~dg~-i--------------------------------- 292 (501)
.++... ...+.|+||| +.|+.++.|.. +
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 222222 2358999999 88888764332 4
Q ss_pred --EEEEccC---CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C-CcEEEEEeeCCCC--
Q 010801 293 --RLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST-- 360 (501)
Q Consensus 293 --~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~-~~i~lwd~~~~~~-- 360 (501)
++||+.+ ++... ...+.. ...+.+|...+..++|+|||+.++... + ..|++||+.+ ++
T Consensus 229 ~l~v~d~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~ 298 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNAT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGR 298 (740)
T ss_dssp EEEEEETTSCCSSSCCC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTE
T ss_pred EEEEEECCCCCCCCcce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cccc
Confidence 4444444 31000 000000 000113567799999999999776542 1 4799999986 54
Q ss_pred ----ceeEe--eccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeC-C--CeEEEEecCCCCcceEEEecccCcc
Q 010801 361 ----PVATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNEN 430 (501)
Q Consensus 361 ----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v 430 (501)
.+..+ ..+...+.. .......|+|||+.|+ ..+. + ..|++|++.++.. ..+......+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v 366 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEV 366 (740)
T ss_dssp EEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCE
T ss_pred cceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEE
Confidence 12222 334333210 0003688999999877 6654 3 4588888876533 3333333334
Q ss_pred cceeeccCCccccCccceeeeecc----cce-eecccc--CC-cc-ccc----ccCCCeEEEEEccCCCEEEEeeCC
Q 010801 431 RKPILQAAPRARRSSLSNLTRGLY----RQA-HENSSS--GH-HE-LSY----NLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~-~iw~~~--~~-~~-~~~----~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
..+.. +. .+.+ ..++.. .+. .||..+ +. .. .+. .........+|+|++++++....+
T Consensus 367 ~~~~~-~d-~~~i-----~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 367 IGIEA-LT-SDYL-----YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp EEEEE-EC-SSEE-----EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred EEEEE-Ee-CCEE-----EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 43332 32 2222 233332 334 777322 11 11 111 123567889999999988766533
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3.5e-19 Score=171.30 Aligned_cols=229 Identities=9% Similarity=0.096 Sum_probs=148.8
Q ss_pred cccccceEEEEEccCCCEEE----EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~la----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.++... .............+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~h~--- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE----------------AKQQKRPFAYHKLLKDAG--- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT----------------TCSSCCCSEEEECCCSGG---
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC----------------CcCCcceeeeeeccCCCC---
Confidence 44667899999999999999 7889999999998764110 000000122345677888
Q ss_pred hhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.|.+++|+ |+ +.+|++++.||+|++||++++......
T Consensus 150 ---------~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------------------------------ 188 (434)
T 2oit_A 150 ---------GMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCAT------------------------------ 188 (434)
T ss_dssp ---------GSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEEE------------------------------
T ss_pred ---------CceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceeec------------------------------
Confidence 889999998 55 789999999999999999876432111
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+|...|.+++|+|+|++|++| .|+.|++||.+ ... ...+......
T Consensus 189 -------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~ 235 (434)
T 2oit_A 189 -------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFY 235 (434)
T ss_dssp -------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTC
T ss_pred -------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCccc
Confidence 4678899999999999999999 99999999998 332 2222111111
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCC------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
...|...|.+++|++++ .++++ .+.+| .+++||++..+... ...+..+..... .+.+...+...+.+
T Consensus 236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~---~~~~~r~~~~~~~~ 309 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCY---GSCTERQHHYYLSY 309 (434)
T ss_dssp CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSC---CCCSSSCCCEEEEE
T ss_pred CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCC---CCCCCcCcceeeeh
Confidence 12345589999999987 66544 33443 38999998653210 012222111000 00011122234445
Q ss_pred eeCCCEEEEEc-C-CcEEEEEee
Q 010801 336 ANDGQHLLSRD-Y-MNLKLWDIR 356 (501)
Q Consensus 336 sp~~~~l~~~~-~-~~i~lwd~~ 356 (501)
.++.+++++++ . +.|.|....
T Consensus 310 l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 310 IEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EGGGTEEEEEETTCSBCEEEEEC
T ss_pred hccCCEEEEecCCCCceeEEEec
Confidence 57777777654 2 667777654
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2.3e-19 Score=172.56 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=151.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++.+++++++.+|++|+.|+ ++||+........... .. .... .... ....+.
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---------------~~-~~~~-~~~~-------~~~~~~ 90 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---------------DD-PNKI-VDKV-------QGLLVP 90 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---------------CC-TTCE-EECC-------CCEEEC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---------------cC-cccc-cccC-------cccccc
Confidence 45689999999999999999887 9999865321100000 00 0000 0000 001111
Q ss_pred cccceeEEEEeecCCCCEEE----EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~----s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.+.|.+++|+ +++++|+ +++.|++|++||+.++...... .
T Consensus 91 ~~~~v~~l~~s--pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~---~------------------------------ 135 (434)
T 2oit_A 91 MKFPIHHLALS--CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ---Q------------------------------ 135 (434)
T ss_dssp CSSCEEEEEEC--TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS---S------------------------------
T ss_pred CCCcccEEEEc--CCCCEEEEEEeccCCCceEEEEEccccccCCcC---C------------------------------
Confidence 22779999998 7899999 7889999999999865200000 0
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
... ....+.+ .+|...|.+++|+|+ +.+|+++ .|++|++||++.. ..... ..+
T Consensus 136 -----~~~-----------~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-------~~~ 190 (434)
T 2oit_A 136 -----KRP-----------FAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-------TLP 190 (434)
T ss_dssp -----CCC-----------SEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-------EEC
T ss_pred -----cce-----------eeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-------ccC
Confidence 000 0011112 689999999999998 7889998 9999999999954 33221 345
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+|+| ++|++|+.||.|++||++ ++.. ..+..+.. ....|...+.+++|++++.++++.
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEE
Confidence 88899999999998 999999999999999998 3221 22222100 001234579999999999888653
Q ss_pred c--CC------cEEEEEeeC
Q 010801 346 D--YM------NLKLWDIRM 357 (501)
Q Consensus 346 ~--~~------~i~lwd~~~ 357 (501)
+ +| .+++|+++.
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EETTCCSSSCCEEEEEECCC
T ss_pred ccCCCccCCCCceEEEEecc
Confidence 2 22 389999975
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.4e-20 Score=171.55 Aligned_cols=233 Identities=13% Similarity=0.008 Sum_probs=160.6
Q ss_pred ceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe----------
Q 010801 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---------- 287 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---------- 287 (501)
.+..++|+|+++.+++ + .++.|.+||+.+ ++....+.... ...+...+..++|+|++ +.|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCC--cccccccccceEECCCC-CEEEEEecccccccccc
Confidence 3677999999987654 5 789999999984 44443322110 00023356789999999 8888876
Q ss_pred --CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEe
Q 010801 288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 288 --~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~ 365 (501)
.++.|.+||+.+++.. ..+.. ...+..++|+|+|++|+++ ++.|++||+.+ ++.+..+
T Consensus 111 ~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~ 170 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK 170 (337)
T ss_dssp EECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred cccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence 5799999999876543 22322 2457889999999988887 58999999985 6666666
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-C-----------------------eEEEEecCCCCcceE
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N-----------------------LLRIFSHGVGSAGGI 421 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~ 421 (501)
..+... ..+.|+|+++.|+..+.+ + .|.+||+.+++....
T Consensus 171 ~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 171 PIQSWE----------------AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp CSTTTT----------------TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred eccccC----------------CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 544311 124778888766544432 2 478999998866545
Q ss_pred EEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-cccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 422 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.+..+...+..++++| ++++ ++.+ ++. .+|+.... ..........+.+++|+|+|++|++++ ++.+++
T Consensus 235 ~~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp EEEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred ecCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence 5666666777899998 6666 6666 566 88855422 222233445678999999999888776 566999
Q ss_pred EeC
Q 010801 499 HYA 501 (501)
Q Consensus 499 ~~~ 501 (501)
|++
T Consensus 306 ~d~ 308 (337)
T 1pby_B 306 YDA 308 (337)
T ss_dssp EET
T ss_pred EEC
Confidence 873
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.7e-19 Score=166.76 Aligned_cols=282 Identities=9% Similarity=0.059 Sum_probs=189.0
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhcccccccc-ceeEEEEe
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC 122 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~V~~v~~~ 122 (501)
++|++++.++.|.+||..+++. ...+. ++. . .+..++|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~s 42 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMVA 42 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEEc
Confidence 4789999999999999987653 23332 221 1 47889997
Q ss_pred ecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec----------
Q 010801 123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---------- 191 (501)
Q Consensus 123 ~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 191 (501)
|++++++ ++..++.|.+||+.+++........... .....+..+.++++...++.+...
T Consensus 43 --~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 43 --PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp --TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred --CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccc
Confidence 7887665 4556889999999988766544322100 011134455666777666555311
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.++.+.+||+.... ....+ . ....+.+++|+|+++.++++ ++.|.+||+. .++....+. ...+...
T Consensus 113 ~~~~i~v~d~~~~~---~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~-----~~~~~~~-- 178 (337)
T 1pby_B 113 QPTRVALYDAETLS---RRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKP-----IQSWEAE-- 178 (337)
T ss_dssp CCCEEEEEETTTTE---EEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEEC-----STTTTTT--
T ss_pred cCceEEEEECCCCc---EEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeee-----ccccCCC--
Confidence 36899999998643 33333 1 23457889999999988888 6889999998 444444321 1111122
Q ss_pred EEEEecCCCcEEEEEeC-CC-----------------------eEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 272 SAEFHPIYCNLLAYSSS-RG-----------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~-dg-----------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
+.|+|++ ..++..+. ++ .|.+||+.+++.. .... ..+.
T Consensus 179 -~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~-----------~~~~ 240 (337)
T 1pby_B 179 -TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREV-----------RIMD 240 (337)
T ss_dssp -TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEE-----------EECS
T ss_pred -ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eeec-----------CCCC
Confidence 2678888 54444332 23 4688998877542 1111 1234
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..+..++|+|||++++++ ++.|++||+.+ ++.+..+..+... .+++|+|+|++|++++.++.
T Consensus 241 ~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECTTSCEEEEESBSSE
T ss_pred CceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------eeEEECCCCCEEEEEcCCCc
Confidence 567889999999999988 69999999985 6766666544332 58999999999999999999
Q ss_pred EEEEecCCCCcceEEEecc
Q 010801 408 LRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~ 426 (501)
|++||+.+++.+ ..+..+
T Consensus 303 i~v~d~~~~~~~-~~~~~~ 320 (337)
T 1pby_B 303 LAAYDAETLEKK-GQVDLP 320 (337)
T ss_dssp EEEEETTTCCEE-EEEECG
T ss_pred EEEEECcCCcEE-EEEEcC
Confidence 999999988443 555444
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=1.7e-18 Score=163.21 Aligned_cols=268 Identities=11% Similarity=0.062 Sum_probs=165.2
Q ss_pred cccceEEEEEccCCCEEEEEecC----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
|...+..++|+|||++|++++.+ +.|.+|++....- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~----- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG----- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence 56778889999999999998875 7999999875211 122233333333
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.....+++ ++++|++++ .++.|.+|++...........
T Consensus 100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------------ 138 (361)
T 3scy_A 100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------------ 138 (361)
T ss_dssp -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------------
T ss_pred -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------------
Confidence 44556665 567777766 688999999975332111000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCe----e-eeee-e
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-D 257 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~----~-~~~~-~ 257 (501)
...... .... ....+...+.+++|+|+|++++++ .++.|.+|++..... . +... .
T Consensus 139 ------------~~~~~g----~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 139 ------------VIEFKG----SGPD-KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ------------EEECCC----CCSC-TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ------------eEEccC----CCCC-ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 000000 0000 001234457889999999977654 689999999874332 1 1100 0
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
... ....+...+..++|+|+| +++++++ .++.|.+||+.++.... ...+.. ...+......++|+
T Consensus 202 ~~~-~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~s 267 (361)
T 3scy_A 202 PEA-FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLS 267 (361)
T ss_dssp EEE-EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEEC
T ss_pred ccc-eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEEC
Confidence 000 012234457899999999 8777666 68999999998664321 011111 01122346799999
Q ss_pred eCCCEEEEE-c--CCcEEEEEeeCC-CC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEE
Q 010801 337 NDGQHLLSR-D--YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR 409 (501)
Q Consensus 337 p~~~~l~~~-~--~~~i~lwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~ 409 (501)
|||++|+++ . ++.|.+|++... ++ .+..+.. .... ..++|+|||++|++++ .++.|.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEEECCCCCEE
Confidence 999988654 3 378999999621 33 2333332 1111 5899999999888887 679999
Q ss_pred EEecC
Q 010801 410 IFSHG 414 (501)
Q Consensus 410 iwd~~ 414 (501)
+|+++
T Consensus 332 v~~~d 336 (361)
T 3scy_A 332 IFERD 336 (361)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 97655
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=9.6e-20 Score=170.79 Aligned_cols=260 Identities=9% Similarity=0.050 Sum_probs=172.4
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
.+++++++.++++++.+++|++||+.+++. ...+..+. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~-----------~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPD-----------KFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSS-----------CCSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCC-----------CCCC
Confidence 457888999999999999999999987653 23333221 0257
Q ss_pred eEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..++|+ |++++++ +...++.|.+||+.+++..........+
T Consensus 46 ~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------ 87 (349)
T 1jmx_B 46 GTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------ 87 (349)
T ss_dssp CEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred ceeEEC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence 789997 7887665 4457899999999887755433111000
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------------CeEEEEECCCCCeeeeeeecCCCC
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
......+..++|+|+|++++++ .+ +.|.+||+.+.. ....+ .
T Consensus 88 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~-----~ 142 (349)
T 1jmx_B 88 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPV-----R 142 (349)
T ss_dssp -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCS-----E
T ss_pred -------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-cccee-----e
Confidence 0012346789999999999987 54 999999998422 21110 0
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc-ccC--------------CC--------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESH--------------GS-------- 319 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~--------------~~-------- 319 (501)
...+...+.+++|+|++ + +++++. .|.+||+.+++... .+..+. ..+ ..
T Consensus 143 ~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 143 TFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp EEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeee
Confidence 11123357889999999 7 555443 49999998876432 111100 000 00
Q ss_pred --------------------------------cceeeecccceeEEEEee-CCCEEEEEcCCcEEEEEeeCCCCceeEee
Q 010801 320 --------------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 320 --------------------------------~~~~~~h~~~i~~~~~sp-~~~~l~~~~~~~i~lwd~~~~~~~~~~~~ 366 (501)
...+..+...+..++|+| ++++++++ ++.|++||+.+ ++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEc
Confidence 000011223567888999 99999988 79999999986 77666665
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
..... .+++|+|++++|++++.++.|++||+++++.+ ..++
T Consensus 293 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~-~~~~ 333 (349)
T 1jmx_B 293 LDHTY----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV-KNIK 333 (349)
T ss_dssp CSSCC----------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEE-EEEE
T ss_pred CCCCc----------------cceEECCCCCEEEEecCCCeEEEEecccccee-eeee
Confidence 43322 58999999998888888999999999887433 4443
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=3.7e-18 Score=160.90 Aligned_cols=212 Identities=8% Similarity=0.067 Sum_probs=133.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCC----CeEEEEeccc--cceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+..++|+ |++++|++++.+ +.|.+|++.. ++.....
T Consensus 50 ~~p~~l~~s--pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---------------------------------- 93 (361)
T 3scy_A 50 ANPSYLIPS--ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN---------------------------------- 93 (361)
T ss_dssp SCCCSEEEC--TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCceEEEC--CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee----------------------------------
Confidence 667889997 899999998875 7999998865 3322211
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeee---ecC---
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV---DMK--- 259 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~---~~~--- 259 (501)
.. ..+......+++ ++++++++ .++.|.+|++...+...... ...
T Consensus 94 ------------------------~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 94 ------------------------TQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp ------------------------EE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred ------------------------Ee-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 01 223445667777 77777765 78999999997444322110 000
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcc------cccc--cceeecccccCCCcceeeecccce
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+.....+...+.+++|+|+| +++++++ .++.|.+|++..... .... ...... .+....
T Consensus 147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~ 213 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGP 213 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCE
T ss_pred CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCC
Confidence 00011223456889999999 7555544 589999999876431 1000 001111 113457
Q ss_pred eEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--
Q 010801 331 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-- 404 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-- 404 (501)
..++|+|||++++++. ++.|.+||+.+ ++. +..+....... .....++|+|||++|+++..
T Consensus 214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~------------~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNA------------QGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCC------------CCEEEEEECTTSSEEEEEECSS
T ss_pred eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCC------------CCcccEEECCCCCEEEEECCCC
Confidence 8899999999887664 49999999984 443 22222211100 01158999999998876655
Q ss_pred CCeEEEEecC
Q 010801 405 SNLLRIFSHG 414 (501)
Q Consensus 405 dg~i~iwd~~ 414 (501)
++.|.+|++.
T Consensus 281 ~~~i~v~~~~ 290 (361)
T 3scy_A 281 ADGVAIFKVD 290 (361)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 4899999996
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2e-18 Score=162.04 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=166.7
Q ss_pred cccceEEEEEccCCCEEEEE-ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc-hhhcc
Q 010801 31 DVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~ 108 (501)
....+..++|+|+|++++++ ..++.|.+||..+++.. ..+..+... ....
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~~~~~~- 138 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK---------------------------GRLVLDDRKRTEEV- 138 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------------------EEEESCCCCCCSSC-
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE---------------------------EEEecCCCcccccc-
Confidence 34567889999999966554 45799999999877542 223322200 0000
Q ss_pred ccccccceeEEEEeecCCCCEEEEee--CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s--~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....+.+++|+ ++++++++++ .++.|.+||..+++.....
T Consensus 139 ---~~~~~~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------- 180 (353)
T 3vgz_A 139 ---RPLQPRELVAD--DATNTVYISGIGKESVIWVVDGGNIKLKTAI--------------------------------- 180 (353)
T ss_dssp ---CCCEEEEEEEE--TTTTEEEEEEESSSCEEEEEETTTTEEEEEE---------------------------------
T ss_pred ---CCCCCceEEEC--CCCCEEEEEecCCCceEEEEcCCCCceEEEe---------------------------------
Confidence 00126789998 7888777765 4789999999887755432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+...+.+++|+|+++.++++ .++.|.+||.. .++....+... ..+
T Consensus 181 ----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~ 228 (353)
T 3vgz_A 181 ----------------------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDG 228 (353)
T ss_dssp ----------------------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSS
T ss_pred ----------------------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCC
Confidence 2233456778999999999998 89999999998 44444433221 223
Q ss_pred cccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+...+..++|+|++ +.+++++. ++.|.+||+.+++.. ..+.. .....++|+|+|+++++
T Consensus 229 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v 288 (353)
T 3vgz_A 229 KEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYV 288 (353)
T ss_dssp SCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEE
T ss_pred CCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEE
Confidence 45568899999999 76555554 599999999887643 23332 12256999999997665
Q ss_pred Ec--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 345 RD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 345 ~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
+. ++.|.+||+.+ ++.+..+...... ..++|+|+|++|+.+..++
T Consensus 289 ~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 289 THRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred EECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence 43 49999999986 7777777654432 6899999999777666554
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=2.2e-19 Score=171.03 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=152.8
Q ss_pred EEEccCCCEEEEEec-CCc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 38 v~~s~~g~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
.+|||||++||.++. +|. |.+||+.+++. .....+|. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~ 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence 889999999999887 674 77888877643 23334454 4
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.+..++|+ |+++.|+.++.++.|++||+.+++...+..
T Consensus 82 ~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~---------------------------------------- 119 (388)
T 3pe7_A 82 NTFGGFLS--PDDDALFYVKDGRNLMRVDLATLEENVVYQ---------------------------------------- 119 (388)
T ss_dssp CSSSCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred CccceEEc--CCCCEEEEEeCCCeEEEEECCCCcceeeee----------------------------------------
Confidence 45567897 899999999999999999999887554331
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEE--EecCCCCEEEEE-----------------------cCCeEEEEECCCC
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEIS 249 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~~l~~~-----------------------~d~~i~iwd~~~~ 249 (501)
.+...+... .++|+++.++.. .+..|.+||+.+
T Consensus 120 ---------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~- 177 (388)
T 3pe7_A 120 ---------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT- 177 (388)
T ss_dssp ---------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-
T ss_pred ---------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-
Confidence 122222222 347888877631 346799999984
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEec-CCCcEEEEEeCC------CeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
++... +..+...+..++|+| +| +.|+....+ ..|.++|...+... .+..+.
T Consensus 178 g~~~~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~-------- 235 (388)
T 3pe7_A 178 GESTV--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR-----KVKTHA-------- 235 (388)
T ss_dssp CCEEE--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE-----ESCCCC--------
T ss_pred CceEE--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE-----EeeeCC--------
Confidence 44333 233556789999999 98 888777653 36777887654321 111100
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--C-C---cEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~-~---~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
....+..++|+|||+.|+..+ + + .|++||+.+ ++. +..+.++..... . .....|+|
T Consensus 236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~---~~~~~~sp 299 (388)
T 3pe7_A 236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------N---YDGSLMVG 299 (388)
T ss_dssp ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------C---TTSSEEEE
T ss_pred ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------c---CCCCeEcc
Confidence 012477889999999876532 2 2 399999975 443 222222111000 0 02357999
Q ss_pred CCcEEEEE---------eCCCeEEEEecCCC
Q 010801 395 DGLHFATG---------SYSNLLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~---------~~dg~i~iwd~~~~ 416 (501)
||+.|+.. ..+..|++||+.++
T Consensus 300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EECCC------------CCCCEEEEEETTTT
T ss_pred CCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99988754 45678999999876
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.7e-18 Score=163.27 Aligned_cols=259 Identities=10% Similarity=-0.014 Sum_probs=164.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEec-CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..++|+|+|++|++++.+ .|.+|++. +++.. .......+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~----------- 82 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG----------- 82 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence 468899999999999999887 99999987 55321 11111111
Q ss_pred cccceeEEEEeecCCCCE--EEEee-------------CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccc
Q 010801 112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~--l~s~s-------------~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
+.+..++|+ |+|++ ++++. .++++.+|++.. ++.....
T Consensus 83 --g~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~---------------------- 136 (365)
T 1jof_A 83 --GHPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV---------------------- 136 (365)
T ss_dssp --SSGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----------------------
T ss_pred --CCCccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE----------------------
Confidence 224557786 78884 44543 588899998863 4432211
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECC-CCCee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQC 252 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~-~~~~~ 252 (501)
..+...+...+.+++|+|+|++++++ .++.|++|+++ ++. .
T Consensus 137 -----------------------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-~ 180 (365)
T 1jof_A 137 -----------------------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-V 180 (365)
T ss_dssp -----------------------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-E
T ss_pred -----------------------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-E
Confidence 00001345678899999999988876 57899999997 333 2
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc--CCcccccccceeecccccCCCcceeeeccc-
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIA- 328 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 328 (501)
...... ....|...+..++|+|+| ++|++++. ++.|.+|++. +++.... ...+.. .+. .+.+|..
T Consensus 181 ~~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~---~~~---~~~g~~~~ 249 (365)
T 1jof_A 181 ELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPL---IPP---GIPDRDPE 249 (365)
T ss_dssp EEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEES---SCT---TCCCBCTT
T ss_pred EEeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEc---CCC---CcCCcccc
Confidence 111100 122245568999999999 88877765 7899999875 3432100 001111 000 0112222
Q ss_pred -----ceeEEE-EeeCCCEEEEEc--CC-----cEEEEEeeCCCCceeE---eeccccccccccccCCCCCcceeeEEEE
Q 010801 329 -----SISDIK-FANDGQHLLSRD--YM-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 329 -----~i~~~~-~sp~~~~l~~~~--~~-----~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.+..++ |+|||++|+++. .+ .|.+|++...++.... ...+.... ..++|
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~ 314 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAV 314 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCE
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------cccee
Confidence 578999 999999887653 23 8999999632443321 22222211 47899
Q ss_pred cC---CCcEEEEEeCC-CeEEEEecCCC
Q 010801 393 SG---DGLHFATGSYS-NLLRIFSHGVG 416 (501)
Q Consensus 393 s~---~~~~l~s~~~d-g~i~iwd~~~~ 416 (501)
+| ||++|++++.+ +.|.+|+++..
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 99 89999998864 89999999765
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=179.18 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=172.7
Q ss_pred eEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcce
Q 010801 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (501)
..++|+ |++++ +..+.|++|++||+.+++...+.
T Consensus 19 ~~~~~s--~dg~~-~~~~~d~~i~~~~~~~g~~~~~~------------------------------------------- 52 (719)
T 1z68_A 19 FFPNWI--SGQEY-LHQSADNNIVLYNIETGQSYTIL------------------------------------------- 52 (719)
T ss_dssp CCCEES--SSSEE-EEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred CccEEC--CCCeE-EEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence 367897 78854 44557999999999988755443
Q ss_pred EEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEE-c---------CCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 197 KIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 197 ~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..+.. .+.+++|+|||++|+++ . ++.|++||+. +++..... .+
T Consensus 53 ------------------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~~~~~-----~l 108 (719)
T 1z68_A 53 ------------------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEFVRGN-----EL 108 (719)
T ss_dssp ------------------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECCSS-----CC
T ss_pred ------------------ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCccccce-----ec
Confidence 22222 48899999999999987 5 6899999998 44442100 12
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce---------eEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI---------SDIK 334 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i---------~~~~ 334 (501)
...+..++|+||| +.|+++. ++.|++||+.+++.. ++... ......+.||...+ .+++
T Consensus 109 ---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~----~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 109 ---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF----QITFN----GRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp ---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE----ECCCC----CBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred ---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE----EEecC----CCcCCeEcccccceeeeecccCcccEE
Confidence 2457889999999 8888875 789999999887542 11111 00011222333222 5899
Q ss_pred EeeCCCEEEEEc-C-C---------------------------------cEEEEEeeCCCCce--eE------eeccccc
Q 010801 335 FANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHL 371 (501)
Q Consensus 335 ~sp~~~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~--~~------~~~~~~~ 371 (501)
|+|||++|++++ + + .|++||+.+ ++.. .. +.++...
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce
Confidence 999999999764 2 2 677888864 3321 11 1123222
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEe----cCCCCcceEEE----ecccCccc-----cee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV----EAGKNENR-----KPI 434 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~v~-----~~~ 434 (501)
+..++|+||++++++.... ..|.+|| +.+++.. ..+ ..|...+. .+.
T Consensus 255 ---------------~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 255 ---------------FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp ---------------EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCE
T ss_pred ---------------EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccE
Confidence 2689999999887775432 3488899 7766433 222 46777776 788
Q ss_pred eccCCccccCccceeeeecccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 435 LQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
|+| +|+. ..+++...++. .+| +.. .....+......+..+.++ +++.|+..+.
T Consensus 319 ~sp--dg~~---l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 319 FSY--DAIS---YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp ECT--TSSC---EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred ECC--CCCe---EEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 988 6654 01233445555 666 332 2233344555667788777 8887776653
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=3.1e-17 Score=167.70 Aligned_cols=295 Identities=9% Similarity=0.029 Sum_probs=180.8
Q ss_pred ccccceEEEEEccCCCEEEEE--ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.|...+..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------ 67 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------ 67 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence 478899999999887667766 5688999999643321 13344444
Q ss_pred ccccccccee---------EEEEeecCCCCE-EEEeeC-CCeEEEEecc--c-cceeeeeccCCCcccccccccccccCc
Q 010801 108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 108 ~~~~~~~~V~---------~v~~~~~~~~~~-l~s~s~-d~~i~lw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+. ...|+.+|||+. |+.++. +..|.++++. + +....+....
T Consensus 68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~----------------- 124 (662)
T 3azo_A 68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS----------------- 124 (662)
T ss_dssp ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------------
T ss_pred ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------------
Confidence 2333 556653478888 776653 5566666665 2 4322211000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----------CeEE
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRIN 242 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----------~~i~ 242 (501)
...|...+.+++|+|||+.|+++ .+ ..|+
T Consensus 125 ----------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 125 ----------------------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp ----------------------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred ----------------------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 01256678899999999999887 55 5899
Q ss_pred EEECCCC-----CeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCC--------CeEEEEEcc-CCccccccc
Q 010801 243 LWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSA 307 (501)
Q Consensus 243 iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~ 307 (501)
+||+... +.... +. .+...+..++|+||| +.|+.++.+ ..|.+||+. ++... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~ 234 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTR 234 (662)
T ss_dssp EEETTSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEE
T ss_pred EEECCCCccccCCceeE--------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccE
Confidence 9999841 33322 33 445677889999999 888877755 379999998 45210 000
Q ss_pred ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCc
Q 010801 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (501)
.+.. +|...+..+.|+|||+++++++ ++ .|++||+.. ++.......+.... .....
T Consensus 235 ~l~~-------------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~ 293 (662)
T 3azo_A 235 TLLG-------------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWT 293 (662)
T ss_dssp EEEE-------------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCS
T ss_pred EeCC-------------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------Ccccc
Confidence 2221 2346789999999999766664 36 555566543 44332222222110 00011
Q ss_pred ceeeEEEEcCCCcEEEEEeCCCeEEEE--ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 385 FDKFECSVSGDGLHFATGSYSNLLRIF--SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 385 ~~~~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.++..++|+|+++++++++. +.++|| |+.++ . ...+..+...+..+. ++..+..+ +++++.+.. .+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~ 363 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-E-LVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV 363 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-E-EEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-c-EEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence 11247899999999999999 999999 44444 2 466777766666551 33223223 455555544 677
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=3.7e-16 Score=142.00 Aligned_cols=261 Identities=12% Similarity=0.154 Sum_probs=177.2
Q ss_pred chhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCce
Q 010801 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (501)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (501)
..|.+.-.|+.+.. ...|-..+.+++++++|+++++...++.|.+||.....
T Consensus 11 ~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-------------------------- 62 (286)
T 1q7f_A 11 QRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-------------------------- 62 (286)
T ss_dssp EEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--------------------------
T ss_pred ceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--------------------------
Confidence 34445555665433 33566789999999999988888888999999976321
Q ss_pred eeEeeec------cCCcchhhccccccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccc
Q 010801 92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (501)
Q Consensus 92 ~~~~~~~------~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 164 (501)
...+. +|. ..+..+++. .+++.++++... ++.|++|+. +++......
T Consensus 63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~---------- 116 (286)
T 1q7f_A 63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG---------- 116 (286)
T ss_dssp --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEEC----------
T ss_pred --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEec----------
Confidence 11221 232 457888884 255666655533 789999994 444332210
Q ss_pred cccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEE
Q 010801 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (501)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~i 243 (501)
..+...+.+++++++|+++++. .++.|.+
T Consensus 117 --------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 117 --------------------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp --------------------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred --------------------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 2334567889999999988887 7899999
Q ss_pred EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
||.. +. ....+. ...+...+.+++++|++ +++++...++.|++||.... .. ..+..
T Consensus 147 ~~~~-g~-~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~----------- 202 (286)
T 1q7f_A 147 FDQN-GN-VLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG----------- 202 (286)
T ss_dssp ECTT-SC-EEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC-----------
T ss_pred EcCC-CC-EEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc-----------
Confidence 9976 33 333221 12344568999999998 88887778999999997542 11 22222
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CC-cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YM-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.++...+..++++|+|+++++.. ++ .|++||.. ++.+..+..+..... ..+++++|+|+++++
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------CFDVALMDDGSVVLA 267 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------EEEEEEETTTEEEEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------ceeEEECCCCcEEEE
Confidence 01124678999999999888775 44 99999963 677777765433210 158999999987777
Q ss_pred EeCCCeEEEEecCCC
Q 010801 402 GSYSNLLRIFSHGVG 416 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~ 416 (501)
+.|+.|++|++...
T Consensus 268 -~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 -SKDYRLYIYRYVQL 281 (286)
T ss_dssp -ETTTEEEEEECSCC
T ss_pred -CCCCeEEEEEcccc
Confidence 67999999998654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=1.6e-16 Score=164.12 Aligned_cols=284 Identities=9% Similarity=0.058 Sum_probs=170.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.....++|+ +++++++++ |++|++||+.+++...+......
T Consensus 17 ~~~~~~~w~--~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~----------------------------------- 57 (740)
T 4a5s_A 17 LKLYSLRWI--SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF----------------------------------- 57 (740)
T ss_dssp CCCCCEEEC--SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-----------------------------------
T ss_pred ccccccEEC--CCCcEEEEc--CCcEEEEECCCCceEEEEechhh-----------------------------------
Confidence 346789998 788888876 99999999999886554321100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCCCCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..+......++|||||+.|+.+ .+ +.+.+||+. +++... +
T Consensus 58 ---------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l 107 (740)
T 4a5s_A 58 ---------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------E 107 (740)
T ss_dssp ---------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------S
T ss_pred ---------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------c
Confidence 1112223458899999999987 54 567799999 444433 5
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc---------ceeEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---------SISDIK 334 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~ 334 (501)
..+...+..++|+||| +.|+.+. ++.|++||+.+++... -...+ .....+.++.. ....+.
T Consensus 108 ~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~---lt~~g-----~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 108 ERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYR---ITWTG-----KEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp SCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEE---CCSCC-----BTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEE---EcCCC-----CccceecCcccccccchhcCCCcceE
Confidence 5667789999999999 8888874 6899999998875321 01111 00111222322 234589
Q ss_pred EeeCCCEEEEEc-C-CcEEEEEe-----------------------------------eC---CCC-ceeEeeccccccc
Q 010801 335 FANDGQHLLSRD-Y-MNLKLWDI-----------------------------------RM---DST-PVATFKIHEHLRP 373 (501)
Q Consensus 335 ~sp~~~~l~~~~-~-~~i~lwd~-----------------------------------~~---~~~-~~~~~~~~~~~~~ 373 (501)
|||||++||..+ | ..+.+|++ .+ ... ....+.....
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~--- 254 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS--- 254 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH---
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc---
Confidence 999999999763 3 44555544 31 100 1111111000
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCC----c---ceEEEecccCccc-----ceeecc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS----A---GGITVEAGKNENR-----KPILQA 437 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~----~---~~~~~~~~~~~v~-----~~~~~~ 437 (501)
+. .....+..++|+|||+.++.... +..|++||+.+++ + ....-..|...+. ...|+|
T Consensus 255 ----~~--~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 255 ----ML--IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ----HH--TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ----CC--CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 00 00112368999999997775543 3479999999886 1 1122256666655 678888
Q ss_pred CCccccCccceee-eec-ccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 438 APRARRSSLSNLT-RGL-YRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 438 ~~~~~~~~~~~l~-~~~-~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
+|+. ++ ..+ .++. .|| +.. +....+......+..+. .+|++.|+..+.
T Consensus 329 --DG~~-----l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 329 --DGNS-----FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp --TSSE-----EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred --CCCE-----EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 6665 55 444 4444 666 333 23333444455666654 355776665543
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.2e-16 Score=147.73 Aligned_cols=259 Identities=9% Similarity=-0.018 Sum_probs=153.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+..++|+ |++++|++++.+ .|.+|++. +++.......
T Consensus 40 ~~~~~~a~s--pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------------- 79 (365)
T 1jof_A 40 EPISWMTFD--HERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------------- 79 (365)
T ss_dssp CCCSEEEEC--TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred CCCcEEEEC--CCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence 457889997 889999988887 99999987 6654322100
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE--EEEE--------------cCCeEEEEECCCCCeeeeee
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~ 256 (501)
..+ ..+..++|+|+|+. ++++ .++.+.+|++...+.....+
T Consensus 80 ----------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 80 ----------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp ----------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred ----------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 011 12344788999984 3333 47899999997434333221
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc-CCcccccccceeecccccCCCcceeeecccceeEEE
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 334 (501)
... ...+...+.+++|+|+| ++|+++.. ++.|++||+. +++... ...+.. ..|...+..++
T Consensus 137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~ 199 (365)
T 1jof_A 137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA 199 (365)
T ss_dssp EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence 110 01244578999999999 87777654 6899999998 554321 011110 01234688999
Q ss_pred EeeCCCEEEEEc--CCcEEEEEeeCC-CCce---eEeeccccccccccccCCCC---CcceeeEEE-EcCCCcEEEEEeC
Q 010801 335 FANDGQHLLSRD--YMNLKLWDIRMD-STPV---ATFKIHEHLRPKLCDLYNND---SIFDKFECS-VSGDGLHFATGSY 404 (501)
Q Consensus 335 ~sp~~~~l~~~~--~~~i~lwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~s~~~~~l~s~~~ 404 (501)
|+|||++|+++. ++.|.+|+++.. ++.. ..+......... +.. ....+..++ |+|||++|++++.
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD-----RDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC-----BCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC-----cccccccccccccEEEECCCCCEEEEECC
Confidence 999999988764 389999988631 3332 122211100000 000 000126899 9999998877654
Q ss_pred C-C-----eEEEEecC-CCCcceE---EEecccCcccceeeccCC-ccccCccceeeeeccc-ce-eecccc
Q 010801 405 S-N-----LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQAAP-RARRSSLSNLTRGLYR-QA-HENSSS 463 (501)
Q Consensus 405 d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~-~~-~iw~~~ 463 (501)
+ + .|.+|++. +++ +.. ....+......++++|.. ++++ |++++.+ +. .+|+.+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence 3 2 89999996 443 322 133344455666666610 2444 5555543 44 666443
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=1e-16 Score=150.03 Aligned_cols=292 Identities=9% Similarity=-0.013 Sum_probs=169.0
Q ss_pred EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEE
Q 010801 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (501)
Q Consensus 119 v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (501)
++++ +++.++++++.++.|++||..+++......
T Consensus 5 ~~~~--~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------------------------- 38 (349)
T 1jmx_B 5 PALK--AGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------------------------------------------- 38 (349)
T ss_dssp CCCC--TTCEEEEEEETTTEEEEEETTTTEEEEEEE--------------------------------------------
T ss_pred cccc--CCCEEEEEeCCCCeEEEEECCCCcEEEEEe--------------------------------------------
Confidence 3454 677889999999999999999887554331
Q ss_pred EeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe
Q 010801 199 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 276 (501)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 276 (501)
.+....+..++|+|+++.++ ++ .++.|.+||+.+ ++....+..... -......+..++|+
T Consensus 39 ----------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~~-~~~~~~~~~~~~~s 100 (349)
T 1jmx_B 39 ----------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSSV-PGEVGRSMYSFAIS 100 (349)
T ss_dssp ----------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCCS-TTEEEECSSCEEEC
T ss_pred ----------------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEcccc-cccccccccceEEC
Confidence 11112466899999998665 45 789999999984 444433211100 00002346789999
Q ss_pred cCCCcEEEEEeCC------------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 277 PIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 277 p~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|+| ++|++++.+ +.|.+||+.+++... ....+.. ...+.+++|+|+|+ +++
T Consensus 101 pdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 101 PDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPM--------------PRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp TTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEEC--------------CSSCCCEEECTTSC-EEE
T ss_pred CCC-CEEEEEcccccccccccccCCCeEEEEECCCccccc-eeeeccC--------------CCcccceeECCCCc-EEE
Confidence 999 888888765 899999998764321 1122222 24688999999999 554
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccc--------cccCCCCC-cceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKL--------CDLYNNDS-IFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
++ +.|++||+.+ ++.+..+..+....... ........ ......+++++++....... ....+..++..
T Consensus 164 ~~-~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG-PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES-SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc-CcEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 43 4599999975 66666655332100000 00000000 00113566766542211100 01112225555
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-cccccccCCCeEEEEEccCCCEEEEee
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+++.....+..+...+..++++|. ++++ ++.+ ++. .+|+.... ..........+.+++|+|++++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~-dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPK-DPNQ-----IYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSS-CTTE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred CCcEEecccccCCCcceeeEecCC-CCCE-----EEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec
Confidence 554333334445556677777772 3444 5555 556 88855432 212223345677999999999888766
Q ss_pred -CCeEEEEeC
Q 010801 493 -GNSLFFHYA 501 (501)
Q Consensus 493 -~~~~~i~~~ 501 (501)
++.+++|++
T Consensus 314 ~~~~v~v~d~ 323 (349)
T 1jmx_B 314 TFNDLAVFNP 323 (349)
T ss_dssp BSSEEEEEET
T ss_pred CCCeEEEEec
Confidence 556999873
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=2.8e-16 Score=149.88 Aligned_cols=298 Identities=11% Similarity=0.026 Sum_probs=175.2
Q ss_pred cccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
|...+..++|||||++||.+... ..|.+||+.+++. ..+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~----------------------------~~l~~~~~----- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA----------------------------VQLTEGKG----- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE----------------------------EECCCSSC-----
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE----------------------------EEeecCCC-----
Confidence 34447889999999998877543 3688888877643 22222220
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc-------------
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM------------- 174 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 174 (501)
.....+.|+ |+|++|+.++.++.|++|++.+++...+....... ......+.
T Consensus 81 ------~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-------~~~g~~l~~~~~~~~~~~~~~ 145 (396)
T 3c5m_A 81 ------DNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW-------KGYGTWVANSDCTKLVGIEIL 145 (396)
T ss_dssp ------BCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE-------EEEEEEEECTTSSEEEEEEEE
T ss_pred ------CccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc-------CCCCCEEEeccCCcccccccc
Confidence 223347887 89999999999999999999988766554322110 00000000
Q ss_pred ccCCCCCCccccccee---ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cC------CeEEE
Q 010801 175 NEHNPPSFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINL 243 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~---~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d------~~i~i 243 (501)
...+.++...++.... .....+.+|++.... .... ..+...+..+.|+| +++.|+.. .+ ..|.+
T Consensus 146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE---LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC---EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ccccCCCCcceeeeeeccCCCcceEEEEECCCCc---EEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 0233444444433221 234578888887532 2222 24556788999999 78877664 32 46888
Q ss_pred EECCCCCeeeeeeecCCCCCCCc-ccceEEEEEecCCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccC
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
||+. ++....+ .... ...+..++|+|+| +.|+.++.+ +.|.+||+.+++.. .+...
T Consensus 221 ~d~~-~~~~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~----- 282 (396)
T 3c5m_A 221 VNED-GSNVRKI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM----- 282 (396)
T ss_dssp EETT-SCCCEES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC-----
T ss_pred EECC-CCceeEe-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC-----
Confidence 8887 3332221 1111 2357889999999 766666543 45999999876532 11111
Q ss_pred CCcceeeecccceeEEEEee-CCCEEEEEc-----------------CCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 318 GSKSFFTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-----------------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
.... +.|+| ||++++++. +..|++||+.+ ++. ..+..+...... .
T Consensus 283 ----------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~ 345 (396)
T 3c5m_A 283 ----------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----L 345 (396)
T ss_dssp ----------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----B
T ss_pred ----------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----c
Confidence 1123 88999 999888642 26899999874 443 344443321000 0
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEE--ecCCC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIF--SHGVG 416 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iw--d~~~~ 416 (501)
..+.......++|+|||+.|+..+. ++...|| ++.++
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 0000000146899999998887765 5555555 44444
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=2.5e-15 Score=139.76 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=162.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+++|++++..++..+.++.++.|.-. ....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~----------- 44 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG----------- 44 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC-----------
T ss_pred cccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC-----------
Confidence 457888999998888777778889998321 223445555
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+++|+ +++++++++..++.|.+||..+++.....
T Consensus 45 -~~~~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------- 82 (333)
T 2dg1_A 45 -LQLEGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------------- 82 (333)
T ss_dssp -CCEEEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEE---------------------------------------
T ss_pred -ccccCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEe---------------------------------------
Confidence 567899997 78887778888899999999877644321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----CeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+...+.+++++++|++++++ .+ +.|.+||.+. +.....+. ...+.
T Consensus 83 ----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~-----~~~~~ 134 (333)
T 2dg1_A 83 ----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIE-----DLSTA 134 (333)
T ss_dssp ----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEEC-----SSSSC
T ss_pred ----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEEc-----cCccC
Confidence 1334578999999999988887 55 6899999883 33322210 11234
Q ss_pred cceEEEEEecCCCcEEEEEeC------CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 268 EVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
..+.+++++|+| +++++... .+.|..+|..+++.. ..... ...+..++|+|+|++
T Consensus 135 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--------------~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 135 YCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKV 195 (333)
T ss_dssp CCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSE
T ss_pred CcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----EeecC--------------CCcccceEECCCCCE
Confidence 578999999998 87776653 355666665543321 11111 235788999999986
Q ss_pred EEEE-c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 342 LLSR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~-~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|+.+ . ++.|++||+...+..+..+...... .+... .....++++++|+++++...++.|.+||.+
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~~~---~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFTGH---EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECCSS---SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecCCC---CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 6544 3 4899999996434433322100000 00000 011579999999988888888999999984
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=2.2e-15 Score=139.65 Aligned_cols=259 Identities=11% Similarity=0.069 Sum_probs=170.4
Q ss_pred cceEEEEEccCCCEEEEEecC------------------------CcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
+.+.+|+++|+|+++++...+ ++|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 569999999999999888766 3688888776643
Q ss_pred CceeeEeeec-cCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccc
Q 010801 89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 89 ~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (501)
...+. ++. .....|++. ++|+++++...++.|++|+..... ...........
T Consensus 82 -----~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------- 135 (329)
T 3fvz_A 82 -----LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------- 135 (329)
T ss_dssp -----EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-------
T ss_pred -----EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-------
Confidence 12222 233 567889997 788888888888999999986542 11111000000
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE--cCCeEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINL 243 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~d~~i~i 243 (501)
+ ...++......++++| ++.++++. .++.|++
T Consensus 136 ---------------------g------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 136 ---------------------G------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp ---------------------C------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred ---------------------C------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 0 0023445678999999 78887776 4899999
Q ss_pred EECCCCCeeeeeeecCCCC---CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 244 WNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
|+.+ +..+..+...... ..++-.....++++|++.+++++...++.|++||..+++.. ..+..
T Consensus 171 ~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-------- 236 (329)
T 3fvz_A 171 FSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----REIKH-------- 236 (329)
T ss_dssp ECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECC--------
T ss_pred EcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----EEEec--------
Confidence 9955 3344332111000 01233457999999993288888888999999999866543 33322
Q ss_pred ceeeecccceeEEEEeeCCCEEEE-------Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 321 SFFTEIIASISDIKFANDGQHLLS-------RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~-------~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
..+...+..++++| +..+++ .. ...|++||..+ ++.+..+....... .....+++
T Consensus 237 ---~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~------------~~p~~ia~ 299 (329)
T 3fvz_A 237 ---ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF------------DMPHDIVA 299 (329)
T ss_dssp ---TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC------------SSEEEEEE
T ss_pred ---cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc------------CCeeEEEE
Confidence 11235677888888 433332 22 25899999875 77777764211100 01168999
Q ss_pred cCCCcEEEEEeCCCeEEEEecCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+|.++++...++.|++|+++.
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCc
Confidence 99999899999999999999864
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=8.2e-15 Score=137.44 Aligned_cols=305 Identities=10% Similarity=-0.001 Sum_probs=186.9
Q ss_pred CCCEEEEEe------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 43 ~g~~latg~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
+++++++.. .|+.|.+||..+++. ...+..+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p- 53 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG- 53 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence 556666543 467999999887653 23444443 44
Q ss_pred eEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.++|+ |++++++++. .+++|.+||..+.+...........
T Consensus 54 -~i~~s--pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--------------------------- 103 (361)
T 2oiz_A 54 -HVQVS--NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--------------------------- 103 (361)
T ss_dssp -EEEEC--TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred -ceEEC--CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence 78997 8999999886 3678999999877655433111000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeee-eecCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSN 262 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (501)
..+......++++|+|++|+++ . ++.|.+||+.+ .+.+.. +.
T Consensus 104 ----------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~----- 149 (361)
T 2oiz_A 104 ----------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA----- 149 (361)
T ss_dssp ----------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-----
T ss_pred ----------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-----
Confidence 1123445678999999999887 3 68999999994 444443 21
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-Ccccccc--cceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.. ....+.+.|++...+++.+.||.+.+|++.. ++..... ...+.. ...+ ..+.++|++
T Consensus 150 ---~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g 211 (361)
T 2oiz_A 150 ---AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-------------KDDP-IFIAPALDK 211 (361)
T ss_dssp ---GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-------------TTSC-BCSCCEECS
T ss_pred ---CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-------------CCCc-eEEEecccC
Confidence 11 1233567787656788889999999999865 3221000 001111 1111 233346777
Q ss_pred CEEEEEc-CCcEEEEEeeCCCC-ceeEeecccc-ccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-----------C
Q 010801 340 QHLLSRD-YMNLKLWDIRMDST-PVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------S 405 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-----------d 405 (501)
..++..+ ++.|+++|+..... ....+..... ..... . .......++|+|+++.++.+.. .
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN--W----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT--C----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccc--c----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 7666554 48899999864221 1122211100 00000 0 0000023899999887776543 3
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC----cccccccCCCeEEEE
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HELSYNLSSKLLHLA 480 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~----~~~~~~~~~~i~~~~ 480 (501)
+.|.+||+.+++ ...++..+. ...++++| ++++ |++++. +. .+|+.... +............++
T Consensus 286 ~~v~viD~~t~~-~v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 286 AEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp SEEEEEETTTTE-EEEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ceEEEEECCCCc-EEEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 589999999884 457777777 89999999 6766 666665 66 99954432 223335666778999
Q ss_pred EccCCC
Q 010801 481 WHPTTN 486 (501)
Q Consensus 481 ~sp~~~ 486 (501)
++|+|.
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999986
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=4.3e-16 Score=148.24 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=97.9
Q ss_pred CcccceEEEEecC-CCCEEEEE-c------CCeEEEEECCCCCeeeeeeecCCCCCCCcc--cceEEEEEecCCCcEEEE
Q 010801 216 AHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 216 ~~~~~v~~l~~~~-~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~ 285 (501)
.+...+..++|+| +|+.|+.. . ...|.++|.. ++.... +..+. ..+..++|+|+| +.|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~ 254 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-GTNMRK--------VKTHAEGESCTHEFWVPDG-SALVY 254 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT-SCCCEE--------SCCCCTTEEEEEEEECTTS-SCEEE
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC-CCceEE--------eeeCCCCcccccceECCCC-CEEEE
Confidence 3455688999999 99988875 4 2378888876 333222 22233 357789999999 76654
Q ss_pred EeC-CC----eEEEEEccCCcccccccceeecccccCCCcceeeecc-cceeEEEEeeCCCEEEEE----------cCCc
Q 010801 286 SSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSR----------DYMN 349 (501)
Q Consensus 286 ~~~-dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~----------~~~~ 349 (501)
.+. ++ .|.+||+.+++.. .+... .. ..|. .....+.|+|||+.|+.. .+..
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~----~l~~~-~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENR----QLTSM-PA--------CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEE----EEEEE-CC--------EEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred EecCCCCCcceEEEEecCCCceE----EEEcC-CC--------ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 433 22 3999999887532 11111 00 0000 012234799999988742 2368
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
|++||+.+ + .+..+..+...... ++. +....+..++|+|||+.|+..+ .+|...||.++
T Consensus 322 i~~~d~~~-~-~~~~l~~~~~~~~~---~~~-~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKN-G-TQHRVARHDTSWKV---FEG-DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTT-T-EEEEEEECCCCCCC---BTT-BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccC-C-ceEEeccccCcccc---ccc-ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99999874 4 34455544431000 000 0000015789999999888666 46777777654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=2.7e-15 Score=153.30 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=132.1
Q ss_pred cCCCCE-EEEE--cCCeEEEEECC--CCCeeeeeeecCCCCCCC-----cccceEEEEEecCCCcEEEEEeCC-------
Q 010801 227 NSDCET-FVSA--DDLRINLWNLE--ISDQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR------- 289 (501)
Q Consensus 227 ~~~~~~-l~~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~d------- 289 (501)
||||+. |+.+ .+..|.++++. ..+.... +.. |...+..++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 7766 35666666654 1022222 222 56778999999999 888888876
Q ss_pred ---CeEEEEEccC------Ccccccccceee-cccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C--------CcE
Q 010801 290 ---GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNL 350 (501)
Q Consensus 290 ---g~i~~wd~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~--------~~i 350 (501)
..|.+||+.+ ++. +.+. . +...+..++|+|||++|+..+ + ..|
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 5899999987 432 1121 1 234678899999999998653 3 379
Q ss_pred EEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC--eEEEEecCCCCcceEEEec
Q 010801 351 KLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 351 ~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 425 (501)
++||+...+ +......++...+ ..++|+|||+++++++.++ .|++||+.+++. ..+..
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~ 282 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCR 282 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSC
T ss_pred EEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce--eeccc
Confidence 999997214 3333333333332 6899999999888888888 566666655532 23322
Q ss_pred ccCc---------ccceeeccCCccccCccceeeeecccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEE
Q 010801 426 GKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 426 ~~~~---------v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
+... +..+++++ ++++ ++++.. +. .+| +.. +....+..+...+..+ |+++++.++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEE
T ss_pred ccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEE
Confidence 3222 34556665 5666 777777 77 999 332 2334444555666655 255555444
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=9.3e-15 Score=137.06 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=169.4
Q ss_pred EEEEccCCCEEEEEec----------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 37 AIEFDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 37 ~v~~s~~g~~latg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++|+|||++|++++. ++.|.+||..+++. ...+......
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~--- 103 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR--- 103 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence 8999999999998863 67899999876643 1222211000
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.........++++ |+|++|+++.. +++|.+||+.+++.... ...
T Consensus 104 ---~~~g~~p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---------------------------- 150 (361)
T 2oiz_A 104 ---VQGLNYDGLFRQT--TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---------------------------- 150 (361)
T ss_dssp ---CCBCCCGGGEEEC--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG----------------------------
T ss_pred ---cccCCCcceEEEC--CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC----------------------------
Confidence 0000346778997 89999998863 68999999998875443 211
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.....+.+.|++ ..+++. .||.+.+|+....++....... ..
T Consensus 151 -----------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~ 194 (361)
T 2oiz_A 151 -----------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQ 194 (361)
T ss_dssp -----------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CC
T ss_pred -----------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cc
Confidence 011224455654 445555 7888888887643443311110 00
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.+.....+ ..+.+.|++ ..++..+.++.|.++|+....... ...+........... + .......++|+|+++.
T Consensus 195 ~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~-~--~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 195 MFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDKAKN-W--VPGGYNLVGLHRASGR 267 (361)
T ss_dssp CSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHHHTT-C--EECCSSCEEEETTTTE
T ss_pred eEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCccccccc-c--ccCCeeEEEEecCCCe
Confidence 12222222 233446777 677777889999999987653211 011110000000000 0 0012234789999887
Q ss_pred EEEE-c-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 342 LLSR-D-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 342 l~~~-~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
+.++ . .+.|.+||+.+ .+.+.++..+. . .+++|+|||++|++++. +.|.
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEE
T ss_pred EEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEE
Confidence 7654 2 14799999987 88888888776 3 68999999999998887 9999
Q ss_pred EEecCCC--CcceEEEecccCcccceeecc
Q 010801 410 IFSHGVG--SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 410 iwd~~~~--~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+||..++ +.+ .++.........+++.|
T Consensus 329 v~D~~t~~l~~~-~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 329 VYDISQPEPKLL-RTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEECSSSSCEEE-EEETTSCSSEEEEEECC
T ss_pred EEECCCCcceee-EEeccCCCCcEEEEecC
Confidence 9999987 443 55555566667777777
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=9e-14 Score=126.17 Aligned_cols=243 Identities=9% Similarity=0.104 Sum_probs=161.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.++++. +++.++++...++.|.+||... +..........
T Consensus 30 ~~p~~v~~~--~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~----------------------------------- 71 (286)
T 1q7f_A 30 TEPSGVAVN--AQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK----------------------------------- 71 (286)
T ss_dssp SCEEEEEEC--TTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS-----------------------------------
T ss_pred CCCceEEEC--CCCCEEEEECCCCEEEEECCCC-cEEEEecccCC-----------------------------------
Confidence 568889996 7888888878899999999873 33222110000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEe-cCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..++...+..+++ .+++.++++. . ++.|.+||.. +..+..+ ...+...+
T Consensus 72 --------------------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~------~~~~~~~~ 123 (286)
T 1q7f_A 72 --------------------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKF------GATILQHP 123 (286)
T ss_dssp --------------------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEE------CTTTCSCE
T ss_pred --------------------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEe------cCccCCCc
Confidence 0244566889999 5778777776 4 8999999954 3333332 12234567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.+++++|+| +++++...++.|.+||.... .. ..+.. .++...+..++++|+|+++++.. ++.
T Consensus 124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 124 RGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred eEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence 999999998 88888778899999996532 21 22221 01224578999999999777765 489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-eEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|++||.. ++.+..+..+.... ....++++++|+++++...++ .|.+|+.. ++.+ ..+..+..
T Consensus 187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~-~~~~~~~~ 249 (286)
T 1q7f_A 187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI-SALESKVK 249 (286)
T ss_dssp EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE-EEEEESSC
T ss_pred EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE-EEEcccCC
Confidence 9999974 56666664332110 116899999999998888886 99999954 3222 22221110
Q ss_pred cccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
...+.+++++|+|+++++..++.+++|.
T Consensus 250 --------------------------------------------~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 250 --------------------------------------------HAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp --------------------------------------------CSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred --------------------------------------------CCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 0135678888988877775566788885
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=6e-13 Score=131.16 Aligned_cols=318 Identities=9% Similarity=-0.004 Sum_probs=200.6
Q ss_pred ccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEE
Q 010801 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (501)
Q Consensus 41 s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (501)
+|.+.++++...+++|.++|..+++.. ..+... ..+..+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~---------------------------~~i~~g-------------~~p~~v~ 203 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIK---------------------------TVLDTG-------------YAVHISR 203 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECS-------------SCEEEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEE---------------------------EEEeCC-------------CCccceE
Confidence 355566677778899999999877542 333322 3467889
Q ss_pred EeecCCCCEEEEeeCCCeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEE
Q 010801 121 WCAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~d~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (501)
|+ |+++++++++.|+.|.+||+. +++.....
T Consensus 204 ~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i--------------------------------------------- 236 (567)
T 1qks_A 204 LS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--------------------------------------------- 236 (567)
T ss_dssp EC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------------------------------
T ss_pred EC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------------------------------------------
Confidence 97 899999999999999999995 54433221
Q ss_pred EeccCceeeeeeEeecCCcccceEEEEec----CCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCC---Ccc-c
Q 010801 199 ANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT-E 268 (501)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~-~ 268 (501)
.. ......++|+ |||++++++ .+++|.++|.. ..+.++.+........ .|. .
T Consensus 237 ----------------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 237 ----------------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp ----------------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCC
T ss_pred ----------------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCC
Confidence 11 2235689999 699998886 78999999988 4555555433211111 122 2
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-- 346 (501)
.+..+..+++++.+++....+|.|.++|....+... ...+.. ......+.|+|+|++++++.
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~ 362 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANA 362 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGG
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCC
Confidence 678888899875666666778999999987653210 011111 23466889999999987664
Q ss_pred CCcEEEEEeeCCCCceeEeec-cccccccccccCCCCCcceeeEEE-EcCCCcE-EEEEe-CCCeEEEEecCCCC-----
Q 010801 347 YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGLH-FATGS-YSNLLRIFSHGVGS----- 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~-l~s~~-~dg~i~iwd~~~~~----- 417 (501)
++.|.++|+.+ ++.+..+.. ...+-+. .... ++|++.. ++++. .++.|.++|..+.+
T Consensus 363 sn~V~ViD~~t-~kl~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 363 RNKLVVIDTKE-GKLVAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp GTEEEEEETTT-TEEEEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCeEEEEECCC-CcEEEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 39999999986 776666654 2211100 1233 5787544 44443 46899999998732
Q ss_pred -cceEEEecccCcccceeeccCCccccCccceeeeecc-------cce-eeccccCC-----cc--ccc---------cc
Q 010801 418 -AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY-------RQA-HENSSSGH-----HE--LSY---------NL 472 (501)
Q Consensus 418 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-------~~~-~iw~~~~~-----~~--~~~---------~~ 472 (501)
....++.........+..+| +++. +..... ... .+++.... .. ... +.
T Consensus 429 ~kvv~~i~~~g~g~~~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 429 WKILDSFPALGGGSLFIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp TSEEEEEECSCSCCCCEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred CEEEEEEecCCCCCEEEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 23456665443333455566 5544 322221 123 66643322 10 111 12
Q ss_pred CCCeEEEEEccCCCEEEEee------CCeEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACAN------GNSLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~------~~~~~i~~ 500 (501)
...+.++.|+|+|+.|-++. ++.|.|++
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 45789999999999876652 46687775
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=1.6e-14 Score=131.87 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=164.9
Q ss_pred cccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+.....+++|+|+|+ +++++..++.|.+|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~-------- 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS-------- 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence 456788999999998 7778888999999998765 2 3344444
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+.+++++ ++|.++++...++.|.+||..+++........
T Consensus 69 ----~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--------------------------------- 109 (296)
T 3e5z_A 69 ----HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSF--------------------------------- 109 (296)
T ss_dssp ----SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEE---------------------------------
T ss_pred ----CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeecc---------------------------------
Confidence 668999997 78888777767789999999877654332100
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE----E-c-------------CCeEEEEECCCCCe
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ 251 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~ 251 (501)
.......+..++++|+|+++++ | . .+.|..++.. +.
T Consensus 110 ------------------------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 163 (296)
T 3e5z_A 110 ------------------------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT 163 (296)
T ss_dssp ------------------------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred ------------------------CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence 0111234667999999998887 3 1 2355555544 33
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcc-cccccceeecccccCCCcceeeecccc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
... +..+......++|+|++ +.|++.+.++.|.+||+. ++.. .. .+.+.. +...
T Consensus 164 ~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~-------------~~~~ 219 (296)
T 3e5z_A 164 LSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV-------------EPGK 219 (296)
T ss_dssp EEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC-------------SSSC
T ss_pred EEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC-------------CCCC
Confidence 222 22344566899999999 877777778999999997 3332 10 122211 2345
Q ss_pred eeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE-cCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i 408 (501)
+..++++++|++.++. ++.|.+||.. ++.+..+..+.. + ++++| +|+++.|++++.++ +
T Consensus 220 p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~~-l 279 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVSTE-F 279 (296)
T ss_dssp CCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETTE-E
T ss_pred CCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCCe-E
Confidence 6789999999977777 7899999975 677777766554 3 68899 68999888888764 4
Q ss_pred EEEecCCC
Q 010801 409 RIFSHGVG 416 (501)
Q Consensus 409 ~iwd~~~~ 416 (501)
.-++.++.
T Consensus 280 ~~~~~~~~ 287 (296)
T 3e5z_A 280 WSIETNVR 287 (296)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 44455544
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=1.7e-15 Score=144.48 Aligned_cols=263 Identities=12% Similarity=0.033 Sum_probs=155.9
Q ss_pred eeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 116 INRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+..++|+ |+|++|+.+..+ ..|.+|++.+++...+.
T Consensus 38 ~~~~~~S--pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--------------------------------------- 76 (396)
T 3c5m_A 38 FYQKCFT--QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT--------------------------------------- 76 (396)
T ss_dssp TTSCCBC--TTSCEEEEEECTTSSCEEEEEETTTTEEEECC---------------------------------------
T ss_pred eecCcCC--CCCCEEEEEEecCCCceEEEEECCCCcEEEee---------------------------------------
Confidence 6778897 899998877543 46888888877644321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..+......+.|+|||+.|+.+ .++.|++||+.. ++...+.. .+.....
T Consensus 77 ----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~-------~~~~~~~ 126 (396)
T 3c5m_A 77 ----------------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT-------VDEEWKG 126 (396)
T ss_dssp ----------------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE-------CCTTEEE
T ss_pred ----------------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe-------cccccCC
Confidence 1222222236799999999887 788999999984 44333321 1111111
Q ss_pred E-------------------EEEecCCCcEEEEE-----eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 272 S-------------------AEFHPIYCNLLAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 272 ~-------------------v~~~p~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
. +.|+|++ +.++.. ..+..|.+||+.+++.. .+.. +.
T Consensus 127 ~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~--------------~~ 187 (396)
T 3c5m_A 127 YGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQ--------------DT 187 (396)
T ss_dssp EEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEE--------------ES
T ss_pred CCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEE----eecc--------------CC
Confidence 1 3456776 555443 35668999998876532 2222 24
Q ss_pred cceeEEEEee-CCCEEEEEcC-------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 328 ASISDIKFAN-DGQHLLSRDY-------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp-~~~~l~~~~~-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
..+..+.|+| +++.|+..++ ..|.+||+.. ++ ...+..+... ..+..++|+|||++|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEE
Confidence 5688999999 8887765432 3577888753 33 2333222111 011578999999988
Q ss_pred EEEeCC-----CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecc----------------cce-
Q 010801 400 ATGSYS-----NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY----------------RQA- 457 (501)
Q Consensus 400 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~- 457 (501)
+.++.+ +.|++||+.+++... +..... .. ..++|. ++++ ++.++. +..
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~-~~-~~~s~~-dg~~-----l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEE--VMVMPP-CS-HLMSNF-DGSL-----MVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEE--EEECCS-EE-EEEECS-SSSE-----EEEEECCC----------CCCCCCEE
T ss_pred EEEecCCCCccceEEEEECCCCCeEE--eeeCCC-CC-CCccCC-CCce-----EEEecCCcceeeccccccccCCCCcE
Confidence 777554 459999998874332 221111 22 667662 4555 555331 123
Q ss_pred eeccccC-CcccccccCC-----------CeEEEEEccCCCEEEEeeC
Q 010801 458 HENSSSG-HHELSYNLSS-----------KLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 458 ~iw~~~~-~~~~~~~~~~-----------~i~~~~~sp~~~~la~~~~ 493 (501)
.+|+... ....+..+.. .+..++|+|||+.|+.++.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 323 YVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 5554332 2222333332 2566899999999987773
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=9.7e-14 Score=129.74 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=160.9
Q ss_pred ccccceEEEEEccCCCEEEEEe---------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (501)
.....+..+++ ||++||... .++.|.+|++.+++. ..+
T Consensus 12 ~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l--- 58 (347)
T 2gop_A 12 AKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI--- 58 (347)
T ss_dssp CCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE---
T ss_pred eeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc---
Confidence 34566888888 899988753 256789999887643 112
Q ss_pred CcchhhccccccccceeEEEEeecCCCCEEEEeeCC---C--eEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d---~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
..+..++|+ |+|++|+.++.+ + .|.+|++.+++...+.
T Consensus 59 -------------~~~~~~~~S--pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---------------------- 101 (347)
T 2gop_A 59 -------------ENATMPRIS--PDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---------------------- 101 (347)
T ss_dssp -------------ESCEEEEEC--TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE----------------------
T ss_pred -------------ccCCCeEEC--CCCCEEEEEEeccCCCcceEEEEECCCCceEEEE----------------------
Confidence 226788998 899999987643 3 3677777766543321
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----------------
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------- 238 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------------- 238 (501)
.+.. +..++|+|||+.|+.+ .+
T Consensus 102 ----------------------------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 102 ----------------------------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp ----------------------------------------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred ----------------------------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 1122 8889999999988876 32
Q ss_pred -----------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-------eEEEEEccCC
Q 010801 239 -----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQS 300 (501)
Q Consensus 239 -----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~~wd~~~~ 300 (501)
..|.+||+. .++.... +.. . .+..++|+|+| +++++..++ ...+|.+.++
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~-~~~~~~~-------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTE-SEEVIEE-------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp ---------CEEEEEEEETT-TTEEEEE-------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ecCcccccCccceEEEEECC-CCeEEee-------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC
Confidence 578899998 4444222 112 2 67889999997 566555442 3455544433
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C--------CcEEEEEeeCCCCceeEeeccccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~--------~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
+. +.+.. + ..+..+ +|||++|+..+ + ..|++|| + ++.......+...
T Consensus 209 ~~-----~~l~~-------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~ 264 (347)
T 2gop_A 209 KE-----EKMFE-------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG 264 (347)
T ss_dssp EE-----EEEEE-------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE
T ss_pred ce-----EEecc-------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc
Confidence 21 22222 1 233333 99999887653 2 3577777 3 4443333333332
Q ss_pred cccccccCCCCCcceeeE-EEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceee
Q 010801 372 RPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
+ .. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++ .+ ++
T Consensus 265 ~---------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~----~~-----~~ 315 (347)
T 2gop_A 265 V---------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE----IV-----VY 315 (347)
T ss_dssp E---------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS----SE-----EE
T ss_pred c---------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC----cE-----EE
Confidence 2 44 8899 88 89999999999999 8854 33 44445566777888776 33 44
Q ss_pred eecccce--eeccc
Q 010801 451 RGLYRQA--HENSS 462 (501)
Q Consensus 451 ~~~~~~~--~iw~~ 462 (501)
+++.++. .+|..
T Consensus 316 ~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 316 LKETATRLRELFTW 329 (347)
T ss_dssp EEECSSSCCEEEEE
T ss_pred EEcCCCChHHheEe
Confidence 5544444 67743
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=1.7e-13 Score=126.91 Aligned_cols=242 Identities=10% Similarity=0.048 Sum_probs=144.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.+.+|+++ ++|+++++...++.+.++............ .....+
T Consensus 24 ~~v~~va~d--~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~ 68 (329)
T 3fvz_A 24 GQVSGVALD--SKNNLVIFHRGDHVWDGNSFDSKFVYQQRG---------------------------------LGPIEE 68 (329)
T ss_dssp SCEEEEEEC--TTCCEEEEECTTCCCCTTSBCTTSCBSCGG---------------------------------GCSCCS
T ss_pred CCceEEEEC--CCCCEEEEeCCCCeEEeeccCcceeecccc---------------------------------cccccC
Confidence 679999997 788888888877654443332211100000 000124
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC--CCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v 270 (501)
+.+.+||..... ....+..++......++++|+|+++++. .++.|++||.+.....+..+... +..-..+-...
T Consensus 69 ~~i~~~d~~~g~---~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 69 DTILVIDPNNAE---ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CCEEEECTTTCC---EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred CcEEEEECCCCe---EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 567777765422 2233323455678899999999988888 88999999987322133322110 00012344568
Q ss_pred EEEEEec-CCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-
Q 010801 271 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD- 346 (501)
Q Consensus 271 ~~v~~~p-~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~- 346 (501)
..++++| ++ +++++.+ .++.|++||. +++.. ..+...... .....++-.....++++|+ ++++++..
T Consensus 146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~---~~~~~~~~~~p~gia~d~~~g~l~v~d~~ 216 (329)
T 3fvz_A 146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSG---SSPRPGQFSVPHSLALVPHLDQLCVADRE 216 (329)
T ss_dssp EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCS---SSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCC---CCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence 9999999 66 8888876 6999999994 44332 222210000 0000012235789999998 66555654
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE-------EeCCCeEEEEecCCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-------GSYSNLLRIFSHGVGS 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-------~~~dg~i~iwd~~~~~ 417 (501)
++.|++||..+ ++.+..+....... . +..++|+| +..+++ ...+..|++|+..+++
T Consensus 217 ~~~I~~~~~~~-G~~~~~~~~~~~~~----------~---~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 217 NGRIQCFKTDT-KEFVREIKHASFGR----------N---VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-CCEEEEECCTTTTT----------C---EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-CcEEEEEeccccCC----------C---cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 48999999974 77777775332211 1 15788998 433333 3345589999988774
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=2.2e-14 Score=146.99 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=153.9
Q ss_pred cccceEEEEEccCCCEEEE-----EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~lat-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
|...+..++|||||++||. |+.+.+|++||+.+++.. . ..+.+.
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~-- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG-- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence 4457999999999999994 444568999999988541 0 111100
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCe-------------EEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~-------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.....++|+ |||+.|+.++.|.. |++|++.++.....
T Consensus 168 --------~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-------------------- 217 (695)
T 2bkl_A 168 --------GKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-------------------- 217 (695)
T ss_dssp --------CTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE--------------------
T ss_pred --------ccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce--------------------
Confidence 112678998 89999999988765 78887776542100
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC----eEEEEECC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLE 247 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~----~i~iwd~~ 247 (501)
.+... ..+...+.++.|+|||++|+.+ .++ .|++|+..
T Consensus 218 ------------------------------------lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 218 ------------------------------------VVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp ------------------------------------EEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred ------------------------------------EEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 00000 3455678899999999998876 444 66666654
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
.+.... +..+...+....+ ++| . |+..+. ++.|.+||+.++.... ...++.. .
T Consensus 261 -~~~~~~--------l~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~-~--------- 317 (695)
T 2bkl_A 261 -EKDFRL--------LVKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPE-D--------- 317 (695)
T ss_dssp -CSSCEE--------EEECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECC-C---------
T ss_pred -CCceEE--------eecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecC-C---------
Confidence 233222 2233344555556 777 6 444443 5889999987753210 0012211 0
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
....+..++++ ++.++++.. ++..+||.+...++....+..+ ...+ ..++++|+++.|+.
T Consensus 318 --~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 318 --SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYY 379 (695)
T ss_dssp --SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEE
T ss_pred --CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEE
Confidence 02457778888 666666664 5888888776435555555433 2211 46788899877663
Q ss_pred E----eCCCeEEEEecCCCC
Q 010801 402 G----SYSNLLRIFSHGVGS 417 (501)
Q Consensus 402 ~----~~dg~i~iwd~~~~~ 417 (501)
. ...++|++||+.+++
T Consensus 380 ~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTEEEEEEEEETTTCC
T ss_pred EEcCCCCCCEEEEEECCCCc
Confidence 2 235789999998874
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=4.8e-12 Score=115.32 Aligned_cols=238 Identities=9% Similarity=0.019 Sum_probs=160.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|+++++...++.|.+||.. ++.. . ..+..+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~---------- 56 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD---------- 56 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT----------
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc----------
Confidence 4679999999999987776667899999977 4320 0 0111222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..|+.. ++.....
T Consensus 57 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-------------------------------------- 93 (299)
T 2z2n_A 57 --AKVMCLTIS--SDGEVWFTENAANKIGRITKK-GIIKEYT-------------------------------------- 93 (299)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcEEEEe--------------------------------------
Confidence 568889986 778877777668889999876 3321110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+.++++.++|.++++. .++.|..||.. +.. .... .......+
T Consensus 94 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~------~~~~~~~~ 143 (299)
T 2z2n_A 94 ----------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKI-REYE------LPNKGSYP 143 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE------CSSTTCCE
T ss_pred ----------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCE-EEec------CCCCCCCC
Confidence 01234467889999999888887 78899999984 332 2211 22334568
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..+++++++ +++++...++.|..||. +++.. .+.. ......+..++++++|++.++.. .+.
T Consensus 144 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 144 SFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred ceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCce
Confidence 999999998 88887777889999998 55332 1111 01124578899999999777664 488
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
|.+||. + ++.. .+....... .+.+++++++|+++++...++.|..||.
T Consensus 206 i~~~~~-~-g~~~-~~~~~~~~~-------------~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-S-GEIT-EFKIPTPNA-------------RPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECT-T-CCEE-EEECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEEECC-C-CcEE-EEECCCCCC-------------CceeEEECCCCCEEEeccCCceEEEECC
Confidence 999998 4 4432 232111100 1168999999997777767889999998
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1e-13 Score=142.57 Aligned_cols=249 Identities=10% Similarity=0.082 Sum_probs=158.0
Q ss_pred cccceEEEEEccCCCEEEEEecCC-----cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
|...+..++|||||++||.+..++ .|++||+.+++.. . ..+. .
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------~-~~~~--~---- 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------P-DVLE--R---- 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------E-EEEE--E----
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------c-cccc--C----
Confidence 344689999999999999876543 8999999987541 0 1111 1
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCe----------------EEEEeccccceeeeeccCCCccccccccccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~----------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+..++|+ |||+.|+.++.++. |++|++.+++....
T Consensus 171 --------~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------- 223 (710)
T 2xdw_A 171 --------VKFSCMAWT--HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----------------- 223 (710)
T ss_dssp --------ECSCCEEEC--TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------
T ss_pred --------cccceEEEE--eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-----------------
Confidence 236789998 89999999887765 66677655431100
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-----CCeEEE
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINL 243 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~i 243 (501)
.+... ..|...+..+.|+|||++|+.+ . +..|++
T Consensus 224 ---------------------------------------~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 224 ---------------------------------------LCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp ---------------------------------------EEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred ---------------------------------------EEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 00000 2345567889999999998875 3 578999
Q ss_pred EECCC------CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC----CeEEEEEccCCcccccccceeecc
Q 010801 244 WNLEI------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 244 wd~~~------~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
||+.. +...... +..+...+.. .|+|+| ..|+..+.. +.|.+||+.++... ..+.+..
T Consensus 264 ~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~- 331 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVP- 331 (710)
T ss_dssp EEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEEC-
T ss_pred EECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccC-
Confidence 99984 2212222 2334444444 488888 666655543 36999998775321 0012211
Q ss_pred cccCCCcceeeecc-cceeEEEEeeCCCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeE
Q 010801 314 AESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 314 ~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
.+. ..+..++|++++.++++.. ++ .|++||+.+ ++.+..+..+...+ ..
T Consensus 332 -----------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~ 384 (710)
T 2xdw_A 332 -----------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VG 384 (710)
T ss_dssp -----------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EE
T ss_pred -----------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EE
Confidence 011 2577889987777777664 45 466666643 66666666553332 57
Q ss_pred EEEcCCCcEEEEE-e---CCCeEEEEecCCCC
Q 010801 390 CSVSGDGLHFATG-S---YSNLLRIFSHGVGS 417 (501)
Q Consensus 390 ~~~s~~~~~l~s~-~---~dg~i~iwd~~~~~ 417 (501)
++++|+++.++.. + ..+.|++||+.+++
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8899998766533 3 25789999998875
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1.1e-13 Score=124.43 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=157.7
Q ss_pred ceEEEEEccCCCEEE-EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
...+++++++|++++ +...++.|.+|+..++... .....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~----------- 66 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL----------- 66 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence 789999999999777 4467889999986654320 0011122
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+|++. +++.++++.. ++.|.+||..+.......
T Consensus 67 -~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~~--------------------------------------- 103 (270)
T 1rwi_B 67 -YQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVLP--------------------------------------- 103 (270)
T ss_dssp -CSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEECC---------------------------------------
T ss_pred -CCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeeee---------------------------------------
Confidence 457889996 6777665555 889999998765422110
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
......+..+++.++|+++++. .++.|.+|+......... .......+.
T Consensus 104 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~ 153 (270)
T 1rwi_B 104 ----------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPD 153 (270)
T ss_dssp ----------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCC
T ss_pred ----------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCce
Confidence 1222467889999999988877 788999997652222111 112233568
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++++|+| +++++...++.|.+||........ .... +...+..++++++|.++++.. ++.|
T Consensus 154 ~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~----~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 154 GVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV----LPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQV 215 (270)
T ss_dssp CEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE----CCCS-------------SCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred eEEEeCCC-CEEEEECCCCEEEEEecCCCceEe----eccc-------------CCCCceEEEECCCCCEEEEECCCCcE
Confidence 89999998 877777778899999987653221 0001 114578999999997777664 4899
Q ss_pred EEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 351 KLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.+||... ....... .+... ..+++++++|+++++...++.|+++++...
T Consensus 216 ~~~~~~~--~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 216 VKLLAGS--TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEECTTC--SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEcCCC--CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999853 3222221 11111 168999999998889999999999998765
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.9e-13 Score=140.45 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=157.1
Q ss_pred CcccceEEEEecCCCCEEEEE-c-CC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 289 (501)
+|...+..++|||||++|+.+ + +| .|++||+. +++..... + ....+..++|+||| +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~~------~--~~~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV------L--ERVKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE------E--EEECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCccc------c--cCcccceEEEEeCC-CEEEEEEEC
Confidence 444568899999999999876 3 33 89999999 44444321 1 11225679999999 888888877
Q ss_pred Ce----------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc------C
Q 010801 290 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y 347 (501)
Q Consensus 290 g~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~ 347 (501)
+. |++|++.++.... ..++.. ..|...+..+.|+|||++|+... +
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccc--eEEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 65 9999998764221 012222 11234578899999999988652 3
Q ss_pred CcEEEEEeeC------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEecCCCC
Q 010801 348 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 417 (501)
Q Consensus 348 ~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 417 (501)
..|++||+.. .......+..+.... ...|+|+|+.|+..+.+ +.|.+||+.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 5899999874 222455555554432 23588898887766553 469999998764
Q ss_pred c-ceEEEecccC--cccceeeccCCccccCccceeeeecccce-eec--cc--cCCcccccccCCCeEEEEEccCCCEEE
Q 010801 418 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS--SGHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 418 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~--~~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
. ....+..+.. .+..+.+.+ ++.+ +++...++. .+| +. ++....+..+...+..++++|+++.|+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 2 2345555544 566677764 5556 777888877 676 33 222333344466788899999998777
Q ss_pred Eee-----CCeEEEEe
Q 010801 490 CAN-----GNSLFFHY 500 (501)
Q Consensus 490 ~~~-----~~~~~i~~ 500 (501)
... ...+|.|+
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 553 24577775
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.2e-13 Score=129.03 Aligned_cols=259 Identities=9% Similarity=0.030 Sum_probs=144.2
Q ss_pred cceEEEEEccCCCEEEEEecC---Cc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+..++|||||++||.++.+ +. |.+|++.+++. ..+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------ 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------ 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence 568889999999999987754 33 77777776543 2223333
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
. +..++|+ |+|+.|+.++.+.. ......... ...+..+.....
T Consensus 105 ------~-~~~~~ws--pdg~~l~~~~~~~~------~~~~~~~~~---------------------~~~~~~~g~~~~- 147 (347)
T 2gop_A 105 ------N-IRSLEWN--EDSRKLLIVGFKRR------EDEDFIFED---------------------DVPAWFDDLGFF- 147 (347)
T ss_dssp ------E-EEEEEEC--TTSSEEEEEEECCC------C------------------------------CCCC--------
T ss_pred ------C-ccceeEC--CCCCEEEEEEccCC------CcCCcEEEc---------------------ccceeecCcccc-
Confidence 5 8889997 89999998875420 000000000 000000000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------C-eEEEEECCCCCeeeeeeecC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~ 259 (501)
......+.+|++.... .++.+ .. . .+..++|+|+| +++++ .+ . ...||.++ .++...+
T Consensus 148 --~~~~~~l~~~d~~~~~---~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l---- 213 (347)
T 2gop_A 148 --DGEKTTFWIFDTESEE---VIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM---- 213 (347)
T ss_dssp ----CEEEEEEEETTTTE---EEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE----
T ss_pred --cCccceEEEEECCCCe---EEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe----
Confidence 0002345566665432 11222 12 2 67789999999 77776 43 2 44555555 4443332
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCC--------CeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..+ ..+..+ +|+| +.|+.++.+ ..|.+|| +++.. .+.. +|...+.
T Consensus 214 ----~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~-------------~~~~~~~ 266 (347)
T 2gop_A 214 ----FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILD-------------EVDRGVG 266 (347)
T ss_dssp ----EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESST-------------TCCSEEE
T ss_pred ----ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----eccc-------------cCCcccC
Confidence 223 444444 9999 777776644 3677787 33221 1111 1235677
Q ss_pred E-EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE-
Q 010801 332 D-IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL- 408 (501)
Q Consensus 332 ~-~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i- 408 (501)
. +.|+ |+ +++++. ++.++|| +. .++..... .+...+ .+++|+| .++++++.++..
T Consensus 267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~-~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 267 QAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA-KGRHWI---------------MGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp EEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE-CSSSEE---------------EEEEESS--SEEEEEECSSSCC
T ss_pred CccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe-cCCCeE---------------EeeeeeC--cEEEEEcCCCChH
Confidence 5 8999 88 777664 5899999 87 35543333 333322 6899999 677777777654
Q ss_pred EEEecCCCCcceEEEecccC
Q 010801 409 RIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~ 428 (501)
.||.++ ++ ...+..+..
T Consensus 325 ~l~~~~-g~--~~~lt~~n~ 341 (347)
T 2gop_A 325 ELFTWD-GE--EKQLTDYND 341 (347)
T ss_dssp EEEEES-SS--EEECCCTTS
T ss_pred HheEeC-Cc--EEEeccccH
Confidence 777776 42 234444443
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=6.8e-13 Score=123.21 Aligned_cols=244 Identities=10% Similarity=0.099 Sum_probs=154.4
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
+...+.+++|+|+|++++++..++.|.+||..+++.. .....+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~--------- 86 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK--------- 86 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS---------
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC---------
Confidence 4566799999999998888888999999998876431 1122334
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ ++++++++...+ +.|.+||..++........
T Consensus 87 ---~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------- 130 (333)
T 2dg1_A 87 ---ANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------------- 130 (333)
T ss_dssp ---SSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------------
T ss_pred ---CCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------------
Confidence 669999997 788877776666 6899999887664322100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c------CCeEEEEECCCCCeeeeeeecC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+...+.+++++|+|+++++. . .+.|..+|.. .++....
T Consensus 131 ----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~---- 177 (333)
T 2dg1_A 131 ----------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI---- 177 (333)
T ss_dssp ----------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE----
T ss_pred ----------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe----
Confidence 1234568899999999888876 3 2456666655 2222221
Q ss_pred CCCCCCcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
......+..++|+|++ +.| ++.+.++.|.+||+.+ +... ..+..... ..+.++ ..+..+++++
T Consensus 178 ----~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~-----~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 178 ----IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATIP-----YYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp ----EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEE-----EECCSS-SEEEEEEEBT
T ss_pred ----ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceEE-----EecCCC-CCCCceEECC
Confidence 1122357889999998 755 4555688999999964 2211 11100000 000111 3567899999
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
+|+++++.. ++.|.+||.. ++.+..+..+..... ....+.+++|+||++.|+.++.+
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCc
Confidence 999877764 4899999973 666666654322000 00001689999998777655554
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=6.6e-13 Score=121.09 Aligned_cols=235 Identities=10% Similarity=-0.004 Sum_probs=155.8
Q ss_pred CcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 216 AHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+.....+++|+|+++ +++++ .++.|..|+.... ... +..+...+.+++++|+| +++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~-------~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSP-------EMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEE-------EESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEE-------EECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 3445677899999998 67777 8999999999843 332 23355678999999999 8887777779999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE----Ec-----------C-CcEEEEEeeC
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD-----------Y-MNLKLWDIRM 357 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~----~~-----------~-~~i~lwd~~~ 357 (501)
+||..+++.. ........ .....+..++++|+|+++++ |+ + +.-.||.+..
T Consensus 94 ~~d~~~g~~~----~~~~~~~~---------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFEG---------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EECSTTCCEE----EEECEETT---------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEcCCCCcEE----EEeeccCC---------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 9999776532 11111000 01235778999999998887 32 0 1235555543
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC-CCCc-c-eEEEecccCccccee
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-VGSA-G-GITVEAGKNENRKPI 434 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~~v~~~~ 434 (501)
.+ .+..+..+.... ..++|+|+++.|++.+.++.|++|++. ++.. . ...+..+...+..++
T Consensus 161 ~g-~~~~~~~~~~~~---------------~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 161 DG-TLSAPIRDRVKP---------------NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp TS-CEEEEECCCSSE---------------EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred CC-CEEEeecCCCCC---------------ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 23 333333222221 689999999998778888999999997 4432 1 223333455567788
Q ss_pred eccCCccccCccceeeeecccce-eeccccCCccc-ccccCCCeEEEEE-ccCCCEEEEeeCCeEEEEe
Q 010801 435 LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL-SYNLSSKLLHLAW-HPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~-sp~~~~la~~~~~~~~i~~ 500 (501)
+.+ +|++ .++. ++. .+|+....... ...+.. +++++| .|+++.|.+++.++++-+.
T Consensus 225 ~d~--~G~l-----~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDA--GGLI-----WASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBT--TSCE-----EEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECC--CCCE-----EEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 877 6665 4544 445 88855543332 333444 889999 6899999999988887664
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=1.4e-12 Score=116.95 Aligned_cols=248 Identities=10% Similarity=0.032 Sum_probs=165.2
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
.+++|++++.|+.|.+||.++|+.. -.+..+.. ..+.++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~---------------------------w~~~~~~~-----------~~~~~~~~~ 45 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV---------------------------WEYPLEKG-----------WECNSVAAT 45 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE---------------------------EEEECCTT-----------CCCCEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE---------------------------EEeCCCcc-----------CCCcCeEEC
Confidence 4688999999999999999887642 33433320 247888887
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
|+|++++ +.++.|..||. +++.+... .
T Consensus 46 --pdG~ilv--s~~~~V~~~d~-~G~~~W~~------------------------------------------------~ 72 (276)
T 3no2_A 46 --KAGEILF--SYSKGAKMITR-DGRELWNI------------------------------------------------A 72 (276)
T ss_dssp --TTSCEEE--ECBSEEEEECT-TSCEEEEE------------------------------------------------E
T ss_pred --CCCCEEE--eCCCCEEEECC-CCCEEEEE------------------------------------------------c
Confidence 7888888 45778999998 66644332 2
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
......+.++.+.++|+++++. . ++.|..+|.+ ++.+..+.... ....+......+++.++|
T Consensus 73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G- 136 (276)
T 3no2_A 73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG- 136 (276)
T ss_dssp ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-
T ss_pred ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-
Confidence 1223457788899999999987 5 7778777764 44443333221 122233345667789999
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 359 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~ 359 (501)
+++++...++.|..||.. ++.. ..+.. ......+...++|++++++.+ +.|..+|..+ +
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G 196 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-N 196 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-C
T ss_pred CEEEEecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-C
Confidence 999999999999999987 7643 23332 134566778899999988765 7899999876 8
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC--------CeEEEEecCCCCcceEEEecc
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.+.++........ ....+..++..++|.++++.... +..+++++.....+..++...
T Consensus 197 ~~~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 197 RIVRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp CEEEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cEEEEecCCCCCCc---------cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 88888864432100 11223688899999988887421 244667775443444444433
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=3.8e-13 Score=137.84 Aligned_cols=238 Identities=6% Similarity=-0.038 Sum_probs=148.6
Q ss_pred CCcccceEEEEecCCCCEEEEE------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 215 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
.+|...+.+++|||||++|+.+ ++..|++||+.++. .+.. ..+... ....++|+||| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~-~~~~-----~~~~~~--~~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE-WSKV-----DVIEGG--KYATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC-BCSS-----CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC-CcCC-----cccCcc--cccceEEecCC-CEEEEEEe
Confidence 3566678899999999999853 34689999999443 3200 012111 12678999999 88998888
Q ss_pred CCe-------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC----cE
Q 010801 289 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL 350 (501)
Q Consensus 289 dg~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~----~i 350 (501)
|.. |++|++.++..... .++.. .+|...+..+.|+|||++|+... ++ .|
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 766 99999987653211 22222 12345788999999999988653 23 56
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---CCCeEEEEecCCCCcc-eEEEecc
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~ 426 (501)
++|+.. ......+..+.... ....+ ++|.+++... .++.|.+||+.++... ...+..+
T Consensus 255 ~~~~~~--~~~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 255 YWKRPG--EKDFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp EEECTT--CSSCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred EEEcCC--CCceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 666543 33344554444332 34555 5666444444 2588999999876431 2333333
Q ss_pred --cCcccceeeccCCccccCccceeeeecccce-eecccc--C-Cccccccc-CCCeEEEEEccCCCEEEEeeC-----C
Q 010801 427 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-HHELSYNL-SSKLLHLAWHPTTNLIACANG-----N 494 (501)
Q Consensus 427 --~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~-~~~~~~~~-~~~i~~~~~sp~~~~la~~~~-----~ 494 (501)
...+..+.+. ++.+ +++...++. ++|..+ + .......+ ...|..++++|+++.|+.... .
T Consensus 317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 3445666665 4555 788888888 888322 2 22222222 556778899999988775442 3
Q ss_pred eEEEEe
Q 010801 495 SLFFHY 500 (501)
Q Consensus 495 ~~~i~~ 500 (501)
.+|+|+
T Consensus 389 ~v~~~d 394 (695)
T 2bkl_A 389 QIYKTS 394 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 577775
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=3.9e-11 Score=118.28 Aligned_cols=320 Identities=12% Similarity=0.041 Sum_probs=184.8
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....+..+.|+|||++|++++.|+.|.+||+. +++. ...+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---------------------------v~~i~~G-------- 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------------VAEIKIG-------- 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------------EEEEECC--------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---------------------------eEEEecC--------
Confidence 34467799999999999999999999999985 4332 2333322
Q ss_pred ccccccceeEEEEee--cCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCccccccccccc-ccCccccCCCCCC-c
Q 010801 109 SLEIEEKINRVRWCA--APNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSF-A 183 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~--~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~ 183 (501)
.....++|++ .|+|++++++. .+++|.++|..+.+........... +.. ..++ ...+..+..++.. .
T Consensus 240 -----~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~--~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 240 -----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE--QEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp -----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT--CCEESCCCEEEEEECSSSSE
T ss_pred -----CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc--ccccCCCceEEEEEcCCCCE
Confidence 2356788861 14888888876 5699999999888776654321100 000 0000 0011111111111 1
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeec-CC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KP 260 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~-~~ 260 (501)
+++ .....+.+.++|........ ... .........+.|+|+|++++++ .++.|.++|.. .++....+.+ .
T Consensus 312 ~vv--~~~~~g~v~~vd~~~~~~~~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg- 384 (567)
T 1qks_A 312 FIV--NVKETGKILLVDYTDLNNLK-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG- 384 (567)
T ss_dssp EEE--EETTTTEEEEEETTCSSEEE-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS-
T ss_pred EEE--EecCCCeEEEEecCCCccce-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC-
Confidence 111 12345677777776532211 111 1233456688999999998775 78999999999 4555555433 1
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCccccc---ccceeecccccCCCcceeeecccceeEEEEe
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
...|.+.-..+ ++|++..+++++. .++.|.++|....+.... .++.+.. ....-..+..+
T Consensus 385 --~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g~g~~~i~~~ 448 (567)
T 1qks_A 385 --QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LGGGSLFIKTH 448 (567)
T ss_dssp --SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECC
T ss_pred --cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CCCCCEEEEeC
Confidence 12343221222 6888525555554 468999999987432111 1122222 11233457789
Q ss_pred eCCCEEEEEc--------CCcEEEEEeeCC-----CCceeEeeccc-cccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 337 NDGQHLLSRD--------YMNLKLWDIRMD-----STPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 337 p~~~~l~~~~--------~~~i~lwd~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
|+++++.+.. .++|.++|+.+. .+....+.... ..+ .. .--.+..+.|+|+|+.+...
T Consensus 449 p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 449 PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI------TE--GQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC------CS--SCCEEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc------CC--CCcceEeeeECCCCCEEEEE
Confidence 9999988754 259999999863 22223332100 000 00 00012689999999877655
Q ss_pred e-----CCCeEEEEecCCCCcceEEEec
Q 010801 403 S-----YSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 403 ~-----~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
. .++.|.|+|.++.+ +...++.
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~-~~~~i~~ 547 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLE-LKHVIKD 547 (567)
T ss_dssp EECCTTSCCEEEEEETTTTE-EEEEECC
T ss_pred eecCCCCCCcEEEEECCCce-EEEEeCC
Confidence 3 37999999999873 3344543
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=3.4e-12 Score=118.01 Aligned_cols=223 Identities=12% Similarity=-0.027 Sum_probs=143.2
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
....+.+. ++..+++...++.|.+||..+++.+...
T Consensus 45 ~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------------------- 80 (328)
T 3dsm_A 45 VAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------------------- 80 (328)
T ss_dssp CEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred cceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEc-----------------------------------------
Confidence 35677774 4556666667899999999988765432
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
........++++++++.+++. .++.|.+||.. ..+....+.... ..+.......+
T Consensus 81 ---------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i 136 (328)
T 3dsm_A 81 ---------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQM 136 (328)
T ss_dssp ---------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCE
T ss_pred ---------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceE
Confidence 112456788998898666666 79999999998 444444432211 01111234566
Q ss_pred EEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C----
Q 010801 274 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 347 (501)
Q Consensus 274 ~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---- 347 (501)
++ .++ +++++.. .++.|.++|+.+++.. ..+.. ......++++|+|++++++. +
T Consensus 137 ~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 137 VQ-YGK-YVYVNCWSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp EE-ETT-EEEEEECTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred EE-ECC-EEEEEcCCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCC
Confidence 67 344 5555544 4899999999987654 22322 12456788999999777653 2
Q ss_pred ------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 348 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 348 ------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
+.|.++|..+ ++....+.......+ ..++|+|++++|..+.. .|.+||..+++....
T Consensus 197 ~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p--------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAET-FTVEKQFKFKLGDWP--------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp SSCBCCCEEEEEETTT-TEEEEEEECCTTCCC--------------EEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred ccccCCceEEEEECCC-CeEEEEEecCCCCCc--------------eeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence 5799999875 666656553221111 68999999998887765 899999988753211
Q ss_pred E-EecccCcccceeeccCCcccc
Q 010801 422 T-VEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 422 ~-~~~~~~~v~~~~~~~~~~~~~ 443 (501)
. +.........+++.|. ++++
T Consensus 260 ~~~~~~~~~p~gi~vdp~-~g~l 281 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPN-NGEV 281 (328)
T ss_dssp CSBCCCSSCEEEEEECTT-TCCE
T ss_pred eeecCCCCceEEEEEcCC-CCeE
Confidence 1 1222345667778774 4444
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=1.5e-10 Score=105.40 Aligned_cols=239 Identities=9% Similarity=0.043 Sum_probs=160.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~---------- 61 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD---------- 61 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence 4678999999999988777678899999976 4321 1 1112222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..||.. ++.....
T Consensus 62 --~~~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-------------------------------------- 98 (300)
T 2qc5_A 62 --AKVMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFTEYP-------------------------------------- 98 (300)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CcceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeEEec--------------------------------------
Confidence 557888886 778777776667889999877 5432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+.++++.++|.++++. .++.|..+|.. +. .... . +......+
T Consensus 99 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~ 148 (300)
T 2qc5_A 99 ----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEY-D-----LPNKGSYP 148 (300)
T ss_dssp ----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEE-E-----CSSTTCCE
T ss_pred ----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEc-c-----CCCCCCCc
Confidence 01223567889999999888887 68899999987 33 2221 1 22234567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
.++++.+++ +++++...++.|..+|. +++.. .+.. ..+...+..+++.++|++.++... +.
T Consensus 149 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 149 AFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCE
Confidence 899999998 87776666889999998 44322 1111 011245789999999987777654 78
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|.+||. . ++... +....... .+.+++++++|+++++...++.|..|+..
T Consensus 211 i~~~~~-~-g~~~~-~~~~~~~~-------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 211 IGRITT-T-GEISE-YDIPTPNA-------------RPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEECT-T-CCEEE-EECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEEcC-C-CcEEE-EECCCCCC-------------CceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 999987 2 44332 21111100 11689999999977777677899999973
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=9.6e-12 Score=114.31 Aligned_cols=247 Identities=11% Similarity=0.127 Sum_probs=156.4
Q ss_pred cceEEEEEccCCCEEEE-------EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEee--eccCCcc
Q 010801 33 DIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPE 103 (501)
Q Consensus 33 ~~v~~v~~s~~g~~lat-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~ 103 (501)
....+++|+++|+++++ +..++.|.+||..+++.. .... ..++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~-- 70 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG-- 70 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE--
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC--
Confidence 45689999999998887 677899999998766431 1000 01233
Q ss_pred hhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..+..+++. ++ +.+++ ++..+.|.+||.. ++.... .... .
T Consensus 71 ----------~~~~~i~~~--~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~--~---------------------- 112 (314)
T 1pjx_A 71 ----------GIPAGCQCD--RDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDS--E---------------------- 112 (314)
T ss_dssp ----------CCEEEEEEC--SSSSEEEE-EETTTEEEEEETT-SCEEECCSBCT--T----------------------
T ss_pred ----------CCCceEEEe--cCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccC--C----------------------
Confidence 568889986 66 55444 4444478889987 654332 1100 0
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------------CeEEEEE
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWN 245 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------------~~i~iwd 245 (501)
......+.++++.++|+++++. .+ +.|..|+
T Consensus 113 ---------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 113 ---------------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp ---------------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred ---------------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 1122457789999999888876 54 5677676
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEe----cCCCcEEEEE-eCCCeEEEEEcc-CCcccccccceeecccccCCC
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----p~~~~~l~~~-~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.. +..... ..+......++++ |++ +.|+++ ..++.|.+||+. +++... ...+..
T Consensus 160 ~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~------- 219 (314)
T 1pjx_A 160 TD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH------- 219 (314)
T ss_dssp TT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE-------
T ss_pred CC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE-------
Confidence 55 322221 1123346789999 998 665555 567899999986 332110 011111
Q ss_pred cceeeecc-cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 320 KSFFTEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 320 ~~~~~~h~-~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
+.++. .....++++++|+++++.. ++.|.+||.++ ++.+..+..+...+ .+++|+|+++
T Consensus 220 ---~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg~ 280 (314)
T 1pjx_A 220 ---IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTK 280 (314)
T ss_dssp ---CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSS
T ss_pred ---CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEEECCCCC
Confidence 11122 4567899999998887764 58999999864 55555555443222 6899999999
Q ss_pred EE-EEEeCCCeEEEEecCCC
Q 010801 398 HF-ATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 398 ~l-~s~~~dg~i~iwd~~~~ 416 (501)
.| ++...++.|..|++...
T Consensus 281 ~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 281 TIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEETTTTEEEEEECSSC
T ss_pred EEEEEeCCCCeEEEEeCCCC
Confidence 55 45556789999998753
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1.2e-11 Score=110.87 Aligned_cols=198 Identities=11% Similarity=0.071 Sum_probs=140.4
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
.++.|++++.|+.|.+||.++++.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~---------------------------------------------------- 31 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY---------------------------------------------------- 31 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE----------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe----------------------------------------------------
Confidence 4688999999999999999888865443
Q ss_pred eeeeeEeecCCcc-cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 206 HARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 206 ~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
..+. ..+.++.+.|+|++++ +.++.|..||.. ++...+. . . +....+.++.+.|+| ++++
T Consensus 32 ---------~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~-----~-~~~~~~~~~~~~~dG-~~lv 92 (276)
T 3no2_A 32 ---------PLEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-A-----A-PAGCEMQTARILPDG-NALV 92 (276)
T ss_dssp ---------ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-E-----C-CTTCEEEEEEECTTS-CEEE
T ss_pred ---------CCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-c-----C-CCCccccccEECCCC-CEEE
Confidence 1222 3567889999999888 556789999984 5544332 1 1 122467889999999 9998
Q ss_pred EEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 285 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 285 ~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
+.+. ++.|..+|. +++.. ..+.. . .. ..++......+++.++|+++++.. ++.|..||.. ++.+
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l----~~~~~-~--~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~ 158 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVL----SKTEF-E--TG----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLL 158 (276)
T ss_dssp EEESTTEEEEEECT-TSCEE----EEEEE-C--CS----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred EecCCCCEEEEEeC-CCCEE----EEEec-c--CC----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEE
Confidence 8887 788888886 45433 22221 0 00 001123455667899999999886 4999999985 7888
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.++...... .++...++|+++++++.++.|..+|.++++.+ .++..
T Consensus 159 w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~ 204 (276)
T 3no2_A 159 NSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNA 204 (276)
T ss_dssp EEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEG
T ss_pred EEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecC
Confidence 887765332 46888899999999999999999999988443 55543
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=2.2e-12 Score=133.16 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=147.1
Q ss_pred cceEEEEEccCCCEEEEEecC-----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+..++|||||++||.+..+ ..|++||+.+++.. ....+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------~~~~~~------ 208 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------ADELKW------ 208 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------EEEEEE------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------CccCCC------
Confidence 478899999999999987644 36999999988541 111111
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCe--------------EEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~--------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+..++|+ || +.|+.++.|+. |++|++.++....
T Consensus 209 ------~~~~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~---------------------- 257 (741)
T 1yr2_A 209 ------VKFSGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD---------------------- 257 (741)
T ss_dssp ------EESCCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----------------------
T ss_pred ------ceeccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----------------------
Confidence 224678897 77 88888876653 5555554433100
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-----CeEEEEECC
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLE 247 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-----~~i~iwd~~ 247 (501)
..+... ..+...+..+.|+|||++|+.. .+ ..|++||+.
T Consensus 258 ----------------------------------~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 258 ----------------------------------QPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp ----------------------------------EEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred ----------------------------------EEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 011000 2333457889999999988875 43 389999998
Q ss_pred CCCee-eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCc-ccccccceeecccccCCCcc
Q 010801 248 ISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 248 ~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (501)
.+... ... +..+...+... +.|+| +.|+..+. ++.|.+||+.++. .. ..++..
T Consensus 303 ~~~~~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~--------- 361 (741)
T 1yr2_A 303 NGKIGPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPE--------- 361 (741)
T ss_dssp TTEECCCEE-------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECC---------
T ss_pred CCCCcccEE-------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecC---------
Confidence 43111 222 22233334444 34888 77776665 4559999987642 11 022222
Q ss_pred eeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 322 ~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+...+..+.++ ++.++++.. ++..+||.+...++....+..+ ...+ ..++++|+++.|
T Consensus 362 ----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l 421 (741)
T 1yr2_A 362 ----SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA---------------SGLSGRPGDRHA 421 (741)
T ss_dssp ----CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE---------------EEEECCBTCSCE
T ss_pred ----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE---------------EEeecCCCCCEE
Confidence 23346677777 455556554 5777777665335555555432 2211 578899998755
Q ss_pred E-EEe---CCCeEEEEecCCCC
Q 010801 400 A-TGS---YSNLLRIFSHGVGS 417 (501)
Q Consensus 400 ~-s~~---~dg~i~iwd~~~~~ 417 (501)
+ +.+ ..++|++||+.+++
T Consensus 422 ~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCEEEEEECCCCc
Confidence 5 222 35789999998763
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=1.6e-11 Score=113.55 Aligned_cols=233 Identities=6% Similarity=-0.090 Sum_probs=144.2
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
.....+.+. +++++++. .++.|.+||..+ .+.+..+ . .......+++++++ +++++...++.|.+||.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i-------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRI-------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINP 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEE-------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEET
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEc-------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEEC
Confidence 345667664 34455566 789999999994 4444432 1 23457899999998 76666658999999999
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
.+++.. ..+.. ... .+.......+++ .+++++++.. ++.|.++|+.+ ++.+..+.....+
T Consensus 113 ~t~~~~----~~i~~-g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p---- 174 (328)
T 3dsm_A 113 KTYEIT----GYIEC-PDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP---- 174 (328)
T ss_dssp TTTEEE----EEEEC-TTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB----
T ss_pred CCCeEE----EEEEc-CCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc----
Confidence 987643 22332 000 000113456667 4555555542 58999999986 7777766644333
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCC----------CeEEEEecCCCCcceEEEecc-cCcccceeeccCCccccC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS----------NLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 444 (501)
..++++|+|+++++...+ +.|.++|..+++ +...+... ......++++| +++.
T Consensus 175 ------------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~--d~~~- 238 (328)
T 3dsm_A 175 ------------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNG--TRDT- 238 (328)
T ss_dssp ------------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEEEECT--TSCE-
T ss_pred ------------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeEEEec--CCCE-
Confidence 478999999988777655 789999998874 33444432 23677889988 4444
Q ss_pred ccceeeeecccceeeccccC-Cc-ccc-ccc-CCCeEEEEEccCC-CEEEEe----e-CCeEEEEeC
Q 010801 445 SLSNLTRGLYRQAHENSSSG-HH-ELS-YNL-SSKLLHLAWHPTT-NLIACA----N-GNSLFFHYA 501 (501)
Q Consensus 445 ~~~~l~~~~~~~~~iw~~~~-~~-~~~-~~~-~~~i~~~~~sp~~-~~la~~----~-~~~~~i~~~ 501 (501)
|..... ...+|+... .+ ... ... ......++++|++ .+.++. . .+.+++|++
T Consensus 239 ----lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 239 ----LYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ----EEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred ----EEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 433333 225553332 11 111 111 3567899999954 554554 2 456888863
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=4.3e-11 Score=107.32 Aligned_cols=197 Identities=8% Similarity=0.009 Sum_probs=127.5
Q ss_pred ceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
...++++. +++.+++ +.+.++.|.+|+..+.......
T Consensus 25 ~p~~i~~~--~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---------------------------------------- 62 (270)
T 1rwi_B 25 SPSGVAVD--SAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------------------------------------- 62 (270)
T ss_dssp CEEEEEEC--TTCCEEEEECSSSCEEEEECC-----EECC----------------------------------------
T ss_pred CccceEEC--CCCCEEEEccCCCCcEEEecCCCcccceEe----------------------------------------
Confidence 57788886 7788776 4467889999987654322110
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
..+...+.++++.++|+++++..++.|.+||.. +...... .......+.++
T Consensus 63 ---------------------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~~~-------~~~~~~~p~~i 113 (270)
T 1rwi_B 63 ---------------------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQTVL-------PFDGLNYPEGL 113 (270)
T ss_dssp ---------------------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCEEC-------CCCSCSSEEEE
T ss_pred ---------------------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEeee-------ecCCcCCCcce
Confidence 122345677999999985555578899999987 3332211 11223567899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~l 352 (501)
+++|+| +++++...++.|.+|+..+.... .... .....+..++++|+|+++++.. ++.|.+
T Consensus 114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-----~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT-----VLPF------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp EECTTC-CEEEEEGGGTEEEEECTTCCSCE-----ECCC------------CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEECCCCEEEEEECCCceeE-----eecc------------ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 999998 87777777899999975543211 1000 0123578899999999777664 489999
Q ss_pred EEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
||... ............. ...++++++|.++++...++.|.+|+....
T Consensus 176 ~~~~~-~~~~~~~~~~~~~---------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 176 LEAES-NNQVVLPFTDITA---------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp ECTTT-CCEEECCCSSCCS---------------EEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EecCC-CceEeecccCCCC---------------ceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99863 3322211111111 168999999988888878899999998654
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=8.3e-11 Score=107.98 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=131.0
Q ss_pred cceeEEEEeecCCCCEEEE-------eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s-------~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....+++|. +++.++++ ...++.|.+|+..+++.......
T Consensus 18 ~~~~~~~~~--~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------- 64 (314)
T 1pjx_A 18 PGAEGPVFD--KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------------------- 64 (314)
T ss_dssp TTCEEEEEC--TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-------------------------------
T ss_pred CCccCceEC--CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-------------------------------
Confidence 446788996 77877777 57788999999877764332100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEEcCCeEEEEECCCCCeeeee-eecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 264 (501)
. ..++...+.+++++++ ++++++...+.|.+||.+ +. .... ... ...
T Consensus 65 -------------------------~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~ 113 (314)
T 1pjx_A 65 -------------------------E-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEG 113 (314)
T ss_dssp -------------------------E-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTS
T ss_pred -------------------------c-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCC
Confidence 0 0234456889999999 766666655589999987 33 2221 100 011
Q ss_pred CcccceEEEEEecCCCcEEEEEeCC---------------CeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~d---------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.....+.+++++++| +++++...+ +.|..||.. ++.. ..... ...
T Consensus 114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~ 173 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQF 173 (314)
T ss_dssp CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESS
T ss_pred ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCC
Confidence 123457899999998 877776655 567777654 3221 11111 234
Q ss_pred eeEEEEe----eCCCEEEEE-c-CCcEEEEEeeCCCCc-----eeEeeccc-cccccccccCCCCCcceeeEEEEcCCCc
Q 010801 330 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 330 i~~~~~s----p~~~~l~~~-~-~~~i~lwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
...++++ |+++.|..+ . ++.|.+||....++. ...+..+. .. ...++++++|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~ 238 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence 6788999 999766554 3 489999998632331 11122111 11 15799999999
Q ss_pred EEEEEeCCCeEEEEecCCCC
Q 010801 398 HFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~ 417 (501)
++++...++.|.+||.++++
T Consensus 239 l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS
T ss_pred EEEEEcCCCEEEEEcCCCCc
Confidence 98888888999999987653
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=9.7e-12 Score=128.34 Aligned_cols=236 Identities=9% Similarity=0.012 Sum_probs=142.8
Q ss_pred CcccceEEEEecCCCCEEEEE-c-C----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 289 (501)
+|...+..++|||||+.|+.+ + + ..|++||+.+ ++.+.. ..+...+..++|+|| +.|+.++.+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~--------~~~~~~~~~~~wspD--~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLAD--------ELKWVKFSGLAWLGN--DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-CCEEEE--------EEEEEESCCCEESTT--SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCCc--------cCCCceeccEEEECC--CEEEEEEec
Confidence 344467889999999999886 3 2 3699999994 443321 011122357899999 445555554
Q ss_pred C--------------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-----Cc
Q 010801 290 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN 349 (501)
Q Consensus 290 g--------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-----~~ 349 (501)
+ .|++|++.++.... ..++.. ..+...+..+.|+|||++|+... + ..
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD--QPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred CcccccccccCCCCCEEEEEECCCCchhC--EEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 3 38889987654221 122222 11223578999999999888653 2 48
Q ss_pred EEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCC-cceEE
Q 010801 350 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS-AGGIT 422 (501)
Q Consensus 350 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 422 (501)
|++||+.. + +....+..+.... ... ++|+|+.|+..+. ++.|.+||+.++. .....
T Consensus 296 l~~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 296 VHVARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp EEEEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred EEEEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 99999975 3 2144554443322 233 4588888887775 3559999998752 33333
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eecccc--CC-ccccc-ccCCCeEEEEEccCCCEEEEee-----
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH-HELSY-NLSSKLLHLAWHPTTNLIACAN----- 492 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~-~~~~~-~~~~~i~~~~~sp~~~~la~~~----- 492 (501)
+..+...+..+.+. ++.+ +++...++. .+|..+ +. ..... .....+..++++|+++.|+...
T Consensus 359 ~~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 359 VPESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp ECCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ecCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 44444444444444 4455 777888888 888322 22 22222 2356788899999998776443
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
...+|+|+
T Consensus 431 P~~i~~~d 438 (741)
T 1yr2_A 431 PATVLALD 438 (741)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEE
Confidence 24577775
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=1.2e-10 Score=105.93 Aligned_cols=232 Identities=9% Similarity=0.069 Sum_probs=146.6
Q ss_pred ceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-.-+..|+|++ .++++...++.|..||..+++. ..+ ...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~-~~~----------- 53 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRV-TMD----------- 53 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEE-ECS-----------
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEE-eCC-----------
Confidence 34678899955 4556666788999999886642 111 122
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.++++. ++++++++ . ++.|.+||..+++...+.....
T Consensus 54 -~~~~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~----------------------------------- 93 (297)
T 3g4e_A 54 -APVSSVALR--QSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN----------------------------------- 93 (297)
T ss_dssp -SCEEEEEEB--TTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred -CceEEEEEC--CCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence 568899997 78885444 4 5679999998776543321100
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCCCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
......+..+++.|+|+++++. .. ..-.+|.+...+.....
T Consensus 94 ----------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------- 144 (297)
T 3g4e_A 94 ----------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------- 144 (297)
T ss_dssp ----------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------
Confidence 1123457889999999977765 32 33456655533332221
Q ss_pred CCCcccceEEEEEecCCCcEE-EEEeCCCeEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.........++|+|++ +.| ++.+.++.|.+||+. ++.... .+.+.. +..+......+++.++|
T Consensus 145 -~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 145 -FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEG 210 (297)
T ss_dssp -EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTS
T ss_pred -eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCC
Confidence 1223346889999999 655 555668899999973 443211 011111 01123457889999999
Q ss_pred CEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEEEeC
Q 010801 340 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (501)
Q Consensus 340 ~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 404 (501)
++.++... +.|.+||..+ ++.+..+..+...+ ++++|. |+++.|...+.
T Consensus 211 ~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 211 KLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence 87777644 7899999875 78888877654332 789998 78776655443
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=6.5e-10 Score=104.12 Aligned_cols=256 Identities=10% Similarity=0.068 Sum_probs=150.8
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC-Ccchh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (501)
.++|||||++|+++. .++.|.+||..+.+.. ..+.-- .+.+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence 899999999999875 3678999998866432 111100 0000
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
.....-..++|+ |+|++|+++.. ++.|.++| .+++.... ...
T Consensus 122 -----~~g~~p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--------------------------- 166 (373)
T 2mad_H 122 -----DVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--------------------------- 166 (373)
T ss_pred -----ccCCCccceEEC--CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------
Confidence 000123467887 89999998874 57899999 88775443 210
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.+ ++.+.|+++ .+++. .||.+.++|. ..+.. ......+
T Consensus 167 --------------------------------~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~ 206 (373)
T 2mad_H 167 --------------------------------PT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGA 206 (373)
T ss_pred --------------------------------Cc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccc
Confidence 00 133445543 33444 7888999998 44433 2111100
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
...+.........+.+++ ..++..+..+.+.+.|+....... ...+........ . ..-.......+.++||++
T Consensus 207 -~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~-~--~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 207 -MLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRK-A--DTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred -cccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccc-c--cceecCceEeEEECCCCC
Confidence 011111112334567776 444444578899999987653211 011111000000 0 000112345578999998
Q ss_pred EEEEEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCe
Q 010801 341 HLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNL 407 (501)
Q Consensus 341 ~l~~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~ 407 (501)
.+.++. .+.|.++|+.+ .+.+.++...... ..++|+|||+ +++++. .++.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCe
Confidence 777642 15799999986 7777888654433 5899999999 777776 5899
Q ss_pred EEEEecCCCCcc
Q 010801 408 LRIFSHGVGSAG 419 (501)
Q Consensus 408 i~iwd~~~~~~~ 419 (501)
|.++|+.+++.+
T Consensus 343 V~ViD~~t~~vv 354 (373)
T 2mad_H 343 LHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCCEE
Confidence 999999988554
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=3.7e-10 Score=107.35 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=159.8
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.....|+|+++|+++++...++.|++||..+++.. ..... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~----------- 171 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F----------- 171 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C-----------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C-----------
Confidence 56889999999997777777789999998876431 11222 1
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.... ++|+ ++++.|+++..++ .|.+|+..++.......
T Consensus 172 -~~~~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g------------------------------------ 211 (409)
T 3hrp_A 172 -KGGK-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG------------------------------------ 211 (409)
T ss_dssp -CBCB-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE------------------------------------
T ss_pred -CCCc-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeEEee------------------------------------
Confidence 2233 8886 7888888887655 78888876654221110
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.........+.+++++|++..|+.+ .++.|+.||..... . ..+... ...+....
T Consensus 212 ---------------------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~-~~~~~~--~~~g~~~~ 266 (409)
T 3hrp_A 212 ---------------------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V-TLIKQL--ELSGSLGT 266 (409)
T ss_dssp ---------------------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E-EEEEEC--CCCSCCCC
T ss_pred ---------------------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E-EEEecc--cccCCCCC
Confidence 0001134556788999955555557 88899999998433 2 111000 01112122
Q ss_pred e-E-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce--eeecccceeEEEEeeCCCEEEEE
Q 010801 270 I-T-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF--FTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 270 v-~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
- . .++|+|++..++++-..++.|+.||.... . ..+.++........- ....-.....++++|+|+++++-
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 1 3 89999964277777777899999987643 1 222221100000000 00001347899999999977776
Q ss_pred c-C-CcEEEEEeeCCCCceeEeeccccccccccccC-CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. . +.|+.|++.. +. +..+.++..... ..+.. ..........++++++|.++++-..+++|+.++++
T Consensus 341 ~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g-~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 341 GFKGYCLRKLDILD-GY-VSTVAGQVDVAS-QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TTTTCEEEEEETTT-TE-EEEEEECTTCBS-CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCCEEEEEECCC-CE-EEEEeCCCCCCC-cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 5 4 8999999753 43 455544411000 00000 00011123689999999988888889999888753
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=1.2e-09 Score=99.36 Aligned_cols=239 Identities=8% Similarity=0.012 Sum_probs=156.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|+++++...++.|..|+.. ++. .. ..+....
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------------------------~~-~~~~~~~---------- 98 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-------------------------KE-YTLPNPD---------- 98 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------EE-EECSSTT----------
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-------------------------EE-EeCCCcC----------
Confidence 4678999999999988877667889999865 211 00 1111122
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..||. +++.....
T Consensus 99 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-------------------------------------- 135 (299)
T 2z2n_A 99 --SAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYE-------------------------------------- 135 (299)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEE--------------------------------------
T ss_pred --CCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEec--------------------------------------
Confidence 557888886 67877777767889999988 54432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+..+++.++|.++++. .++.|..||.. +. .... ........+
T Consensus 136 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~ 185 (299)
T 2z2n_A 136 ----------------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITES-GD-ITEF------KIPTPASGP 185 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCE
T ss_pred ----------------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-Cc-EEEe------eCCCCCCcc
Confidence 02234567889999999888887 78899999983 33 2221 022334567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
.++++++++ +++++...++.|.+||. +++.. .+.. ..+...+.+++++++|++.++. .++.
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCce
Confidence 899999998 87777667889999998 55421 1211 0123568899999999977766 3489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|..||.. ++ +..+....... .+.++++ ++++++++.+ .+.|..++.+++
T Consensus 248 i~~~d~~--g~-~~~~~~~~~~~-------------~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 248 IGRLTSN--NI-IEEYPIQIKSA-------------EPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEETT--TE-EEEEECSSSSC-------------CEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEEECCC--Cc-eEEEeCCCCCC-------------ccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9999973 43 33332111100 1168888 8888777665 567777777654
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=3.6e-10 Score=104.46 Aligned_cols=306 Identities=9% Similarity=0.017 Sum_probs=177.7
Q ss_pred EEEccCCCEEEEEec-----CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 38 v~~s~~g~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....|+++.+++... ++.|.+.|..+++. +..+....
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~----------- 79 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF----------- 79 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence 455799999888765 67999999887653 24444322
Q ss_pred ccceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
.+ . ++++ |+|++++++. .++.|.+||..+++...........
T Consensus 80 -~P-~-va~s--pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~----------------------- 131 (386)
T 3sjl_D 80 -LP-N-PVVA--DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----------------------- 131 (386)
T ss_dssp -SC-E-EEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-----------------------
T ss_pred -CC-c-EEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-----------------------
Confidence 33 3 8887 8999888775 3678999999998766544211000
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
+ .........++|+|||++++++ . ++.|.++|+. ..+.+..+.+
T Consensus 132 ----------------------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v- 178 (386)
T 3sjl_D 132 ----------------------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDV- 178 (386)
T ss_dssp ----------------------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEEC-
T ss_pred ----------------------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEEC-
Confidence 0 0012234568999999998876 3 6899999999 5556555422
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccce-eEEEEe-
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFA- 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~s- 336 (501)
.+ +....|.+.+.+++.+.||.+.+.++.. ++........+.. . ..++ ....|.
T Consensus 179 ----~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-----~--------~~~~~~~~~~~~ 235 (386)
T 3sjl_D 179 ----PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----E--------DEFLINHPAYSQ 235 (386)
T ss_dssp ----CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----T--------TSCBCSCCEEET
T ss_pred ----CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc-----c--------cccccccceeEc
Confidence 11 1122344436777888899999999876 4432100011110 0 1112 223564
Q ss_pred eCCCEEEEEcCCcEEEEEeeCCC-CceeEeecc------ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-----
Q 010801 337 NDGQHLLSRDYMNLKLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----- 404 (501)
Q Consensus 337 p~~~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----- 404 (501)
++|+++....++.|++.|+.... +.+..+... ....+. +...++++++++.|.....
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-----------g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-----------GWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-----------SSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCC-----------CcceeeECCCCCeEEEEecccccc
Confidence 68877766656999999986411 122222200 000000 0024888999888777643
Q ss_pred -----CCeEEEEecCCCCcceEEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC-CcccccccCCCe
Q 010801 405 -----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKL 476 (501)
Q Consensus 405 -----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i 476 (501)
.+.|.+.|+.+++.+ ..+..- ..++.+++++ +++ . .+++...++. .+++... ...........-
T Consensus 305 ~hk~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~--D~~~~----ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQ--DEKPL----LYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECS--SSSCE----EEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred ccCCCCCEEEEEECCCCeEE-EEEECC-CCcceEEECC--CCCeE----EEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 257999999998555 444332 2677899998 444 3 0343444555 6663331 222222222333
Q ss_pred EEEEEccC
Q 010801 477 LHLAWHPT 484 (501)
Q Consensus 477 ~~~~~sp~ 484 (501)
+.|.+++|
T Consensus 377 ~~l~~s~d 384 (386)
T 3sjl_D 377 PQVITTAD 384 (386)
T ss_dssp CCEEEECC
T ss_pred ceeEECCc
Confidence 45556655
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=2e-10 Score=104.93 Aligned_cols=235 Identities=9% Similarity=0.000 Sum_probs=149.8
Q ss_pred ccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----------------------------~~~~~~~------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----------------------------DVLLDAT------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----------------------------EEEEESC-------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----------------------------EEEeCCC-------
Confidence 3456678899999998 55666678899999873 321 2233333
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..+..+++. ++|+++++...++.|.+|+.. ++.......
T Consensus 86 -----~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~--------------------------------- 124 (305)
T 3dr2_A 86 -----AFTNGNAVD--AQQRLVHCEHGRRAITRSDAD-GQAHLLVGR--------------------------------- 124 (305)
T ss_dssp -----SCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEECE---------------------------------
T ss_pred -----CccceeeEC--CCCCEEEEECCCCEEEEECCC-CCEEEEEec---------------------------------
Confidence 558889996 788866655566889999876 543322100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE----E-c-------------CCeEEEEECCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISD 250 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~ 250 (501)
........+..+++.++|+++++ | . .+.|..+|.. .+
T Consensus 125 ------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g 179 (305)
T 3dr2_A 125 ------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GS 179 (305)
T ss_dssp ------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SC
T ss_pred ------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CC
Confidence 00111234667899999998886 3 2 2456666665 23
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC------CeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+.... . .......++|+|++ +.|+++... +.|.+||+..+.+. ..+.+..
T Consensus 180 ~~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~------------ 235 (305)
T 3dr2_A 180 PLQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS------------ 235 (305)
T ss_dssp CCEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC------------
T ss_pred cEEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE------------
Confidence 32221 1 22345789999999 877776665 78999998765311 0112211
Q ss_pred ecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
........+++.++|++.++. .+.|.+|+.. ++.+..+..+... .+++|+++++.|..++.
T Consensus 236 ~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEET
T ss_pred CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcC
Confidence 012345678999999965554 4559999874 7777777655432 58999999988888777
Q ss_pred CCeEE
Q 010801 405 SNLLR 409 (501)
Q Consensus 405 dg~i~ 409 (501)
++..+
T Consensus 297 ~~l~~ 301 (305)
T 3dr2_A 297 PCLWM 301 (305)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 65433
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=3.9e-09 Score=98.86 Aligned_cols=253 Identities=9% Similarity=-0.058 Sum_probs=142.8
Q ss_pred EEccCCCEEEEEec--CC---cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 39 ~~s~~g~~latg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
...|+++++.+... .. +|.++|..+++. ...+....
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------ 67 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------ 67 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence 44578888877653 22 789999887653 23333222
Q ss_pred cceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.+ .++++ ||+++++++. .++.|.+||..+.+..........
T Consensus 68 ~p--~i~~s--pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~------------------------- 118 (373)
T 2mad_H 68 LP--NPVAA--HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA------------------------- 118 (373)
T ss_pred CC--CeEEC--CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-------------------------
Confidence 22 78897 8999988885 367899999987765543311100
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeee-eecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~ 259 (501)
.. ..+......++|+|||++|+++ . ++.|.++| . .++.... +.
T Consensus 119 ---------------------------~~--~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~-- 165 (373)
T 2mad_H 119 ---------------------------PR--FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLS-- 165 (373)
T ss_pred ---------------------------cc--cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcC--
Confidence 00 0011234578999999999886 3 58899999 7 4444443 21
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.. .++.+.|++.+.+++.+.||.+.++|. +++... .... . + .+.+.........+.+++
T Consensus 166 ---~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~----~~~~-~--~----~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 166 ---SP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG----AGLV-G--A----MLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---CC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE----EEec-c--c----cccCCcceeecceeEecC
Confidence 11 124566776567778888999999999 765331 1100 0 0 000000112335566765
Q ss_pred CEE-EEEcCCcEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC----------CCe
Q 010801 340 QHL-LSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNL 407 (501)
Q Consensus 340 ~~l-~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----------dg~ 407 (501)
..+ +....+.+.+.|+.... +.+..+......... ..........+.++|+++.|..... ++.
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~-----~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA-----DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc-----cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 543 34444889999986411 122222211100000 0000000134788999887776543 357
Q ss_pred EEEEecCCCCc
Q 010801 408 LRIFSHGVGSA 418 (501)
Q Consensus 408 i~iwd~~~~~~ 418 (501)
|.++|+.+++.
T Consensus 300 V~VID~~t~~v 310 (373)
T 2mad_H 300 VTSVTGLVGQT 310 (373)
T ss_pred EEEEECCCCEE
Confidence 99999987733
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=2.9e-11 Score=112.28 Aligned_cols=192 Identities=8% Similarity=0.046 Sum_probs=125.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..++.+++++...++|+|+.++ ++||+++..+. .+... ..+.... ....+.
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~---------~~~~~-------~~~~~~~-~~~~lp----------- 88 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRD---------HITSD-------STPLTFK-WEKEIP----------- 88 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH---------HHHSS-------SCCCCCS-EEEECT-----------
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh---------hhccc-------cccccce-EEeeCC-----------
Confidence 4799999999999999999874 66799774321 00000 0001110 111233
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
. |+.|+| ++.+|+++ .++.|++||+.+.......
T Consensus 89 -~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~--------------------------------------- 122 (388)
T 1xip_A 89 -D-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV--------------------------------------- 122 (388)
T ss_dssp -T-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------------------------------
T ss_pred -C-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------------------------------
Confidence 6 999999 57788888 8899999999875522211
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..|...+.++.+.+.. ++++ .||.|.+||+... .... +...|+
T Consensus 123 ----------------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~-~~~~-----------~~~~Vs 166 (388)
T 1xip_A 123 ----------------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTK-STKQ-----------LAQNVT 166 (388)
T ss_dssp ----------------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTC-CEEE-----------EEESEE
T ss_pred ----------------------ceeecceeeEEecCCC--EEEEECCCCEEEEEccCC-cccc-----------ccCCce
Confidence 2334456676665442 6666 9999999999833 3222 345799
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+++|+|+| ++.|..||.+++|+........ .+.+.. + +... ...+|...|.++.|.++++++++
T Consensus 167 ~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~-P--p~~~-~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSL-P--SELE-ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECC-C--HHHH-TSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecC-C--cccc-cccCCCeeEEEEEEecCCeEEEE
Confidence 99999998 6789999999999887764210 022211 0 0000 00125678999999999999986
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.32 E-value=3.2e-09 Score=96.54 Aligned_cols=179 Identities=7% Similarity=0.059 Sum_probs=112.2
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---------
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------- 289 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------- 289 (501)
..+.+++++++|+++++. ++.|.+||.+ .++...+.... .......+..++++|+| +++++...+
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 468889999999955544 5689999988 34333221111 11123457899999999 766654322
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEee-CCCCce----
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIR-MDSTPV---- 362 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~-~~~~~~---- 362 (501)
..-.+|.+....... ..... ....+.++|+||++.|..+ + .+.|.+|++. ..+...
T Consensus 128 ~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~ 190 (297)
T 3g4e_A 128 HQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS 190 (297)
T ss_dssp TCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE
T ss_pred CCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE
Confidence 223455443221110 11111 2346789999999977654 3 3899999984 223321
Q ss_pred -eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 363 -ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
..+...... ...++++++|++.++...++.|..||.++++ ....+..+...+.+++|.
T Consensus 191 ~~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 191 VYKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBEEEEEEE
T ss_pred EEECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCceEEEEe
Confidence 111111111 1579999999988888888999999998874 446677666677888887
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=2.2e-10 Score=117.03 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=95.6
Q ss_pred cccceEEEEecCCCCEEEEE--c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC--
Q 010801 217 HDFNINSISNNSDCETFVSA--D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-- 289 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-- 289 (501)
|...+.++.|+|||++|+.. . .+.|+++|+......... +..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 44457789999999988653 2 358999998754322222 22333444444 666663555555443
Q ss_pred -CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeE
Q 010801 290 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 290 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~ 364 (501)
+.|..+|+.++... ..+.+.. |...+. .|++++++|+... + ..|++||+. +.....
T Consensus 304 ~~~l~~~d~~~~~~~--~~~~l~~-------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~ 364 (693)
T 3iuj_A 304 NRRLVTVDAANPGPA--HWRDLIP-------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVRE 364 (693)
T ss_dssp TCEEEEEETTSCCGG--GCEEEEC-------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEE
T ss_pred CCEEEEEeCCCCCcc--ccEEEec-------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEE
Confidence 67899998876421 0112222 223343 8999999887653 3 368888875 444444
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEecCCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 417 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 417 (501)
+...... .+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 365 l~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 365 VALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4322111 01456777887766655444 789999998764
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=1.3e-09 Score=99.48 Aligned_cols=231 Identities=11% Similarity=0.006 Sum_probs=143.6
Q ss_pred ccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 218 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 218 ~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
........|+|+++ +++++ .++.|..|+.. +.. .. +..+...+..++++++| +++++...++.|.+|
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~~-------~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--DV-------LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRS 112 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--EE-------EEESCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--EE-------EeCCCCccceeeECCCC-CEEEEECCCCEEEEE
Confidence 44567889999998 55667 88999999885 332 22 22244568899999998 877666667889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE----Ec--------------CCcEEEEEeeC
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWDIRM 357 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~----~~--------------~~~i~lwd~~~ 357 (501)
|.. ++. ..+..... . .....+..++++|+|++.++ |. .+.|+.||..+
T Consensus 113 ~~~-g~~-----~~~~~~~~--~------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 113 DAD-GQA-----HLLVGRYA--G------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp CTT-SCE-----EEEECEET--T------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred CCC-CCE-----EEEEeccC--C------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 975 432 11111000 0 01135778999999998886 32 13466666543
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC------CeEEEEecCCCCcce--EEE-ecccC
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG--ITV-EAGKN 428 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~-~~~~~ 428 (501)
++... +...... ..++|+||++.|+.+... +.|++|++..+. +. ..+ .....
T Consensus 179 -g~~~~-~~~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 179 -SPLQR-MADLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp -CCCEE-EEEESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred -CcEEE-EecCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 44332 2211111 589999999987776654 789999987653 21 111 11223
Q ss_pred cccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
....+++.+ +|.+ .++. .++..+|+..+...........+..++|+|+++.|.+++.++++.++
T Consensus 240 ~pdgi~~d~--~G~l-----wv~~-~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDR--GGWL-----WSSS-GTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCCSEEECT--TSCE-----EECC-SSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCeEEECC--CCCE-----EEec-CCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 334555555 4544 3333 34446675554433333333468899999999999999989988765
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=1.8e-10 Score=106.97 Aligned_cols=193 Identities=8% Similarity=0.046 Sum_probs=123.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..++.++++ +...++++|+.++ +++|++.+.+-.... . .
T Consensus 38 ~~~nlLais--~~~gll~a~~~~~-l~v~~~~~l~~~~~~--~------------------------------------~ 76 (388)
T 1xip_A 38 ASLQNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITS--D------------------------------------S 76 (388)
T ss_dssp SCCBCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHS--S------------------------------------S
T ss_pred ccccEEEEc--CCCCEEEEeCCCE-EEEEEhhHhhhhhcc--c------------------------------------c
Confidence 468999998 6778899998875 666998765410000 0 0
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+. .+.... ..+.. |+.++| ++..|+++.++.|++||+....+... ...|...+.++
T Consensus 77 ~~-----------~~~~~~--~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i 132 (388)
T 1xip_A 77 TP-----------LTFKWE--KEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQL 132 (388)
T ss_dssp CC-----------CCCSEE--EECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEE
T ss_pred cc-----------ccceEE--eeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeE
Confidence 00 000000 23445 999999 88999999889999999985443222 23455667777
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
.+.+. + +++++.||.|.+||+.++... . +...|++++|+|+| ..+...||.+++|
T Consensus 133 ~~~~p--~-~av~~~dG~L~v~dl~~~~~~----~-----------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~ 187 (388)
T 1xip_A 133 KNVNN--T-LVILNSVNDLSALDLRTKSTK----Q-----------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSF 187 (388)
T ss_dssp EECSS--E-EEEEETTSEEEEEETTTCCEE----E-----------------EEESEEEEEECSSE-EEEEETTSCEEEE
T ss_pred EecCC--C-EEEEECCCCEEEEEccCCccc----c-----------------ccCCceEEEEcCCc-eEEEEcCCcEEEE
Confidence 76653 3 888899999999999876532 1 12479999999999 3334457999999
Q ss_pred EeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 354 DIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 354 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
+... ... ..++........ ++. .-..+.++.|.+++.++++-.
T Consensus 188 ~~~~-~~~~~k~~I~~Pp~~~~---~~~---~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRN-GEMEKQFEFSLPSELEE---LPV---EEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEET-TEEEEEEEECCCHHHHT---SCT---TTSEEEEEEESSSSEEEEEEE
T ss_pred cCCC-ccccccceecCCccccc---ccC---CCeeEEEEEEecCCeEEEEEc
Confidence 8874 332 445521110000 000 012237999999999998744
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.30 E-value=2.3e-09 Score=99.11 Aligned_cols=261 Identities=11% Similarity=0.076 Sum_probs=147.9
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++++|||++|+++. .++.|.+||..+++.. ..+.-...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g---- 130 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA---- 130 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence 399999999988765 3678999999877542 22210000
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.......-..++|+ |||++++++.. ++.|.++|+.+++........
T Consensus 131 -~r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------------------------- 179 (386)
T 3sjl_D 131 -PRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------------------------- 179 (386)
T ss_dssp -CCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------------------------
T ss_pred -cccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------------------------
Confidence 000000234568887 89999888863 689999999998876654211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+. ...+....+.+++. .||.+.+.++...+...... .+ .+
T Consensus 180 -------------------------------g~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~--~~ 220 (386)
T 3sjl_D 180 -------------------------------DC-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE--VF 220 (386)
T ss_dssp -------------------------------SE-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC--CC
T ss_pred -------------------------------Cc-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc--ee
Confidence 00 01111122233332 45555555554222221100 00 01
Q ss_pred CCcccceE-EEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc--ccCCCcceeeecccceeEEEEeeCC
Q 010801 264 DDLTEVIT-SAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 264 ~~~~~~v~-~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..-...+. ...|. ++| ++++ .+.+|.|.+.|+.+...... ..+.... ..... -.......++++|++
T Consensus 221 ~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g-----~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADG-----WRPGGWQQVAYHRAL 291 (386)
T ss_dssp SCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTT-----EEECSSSCEEEETTT
T ss_pred ccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceee--cceecccccccccc-----ccCCCcceeeECCCC
Confidence 11111111 23564 666 5444 66689999999976542110 1111000 00000 012345568889998
Q ss_pred CEEEEEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE-eCCC
Q 010801 340 QHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSN 406 (501)
Q Consensus 340 ~~l~~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg 406 (501)
+.+.... .+.|.++|+.+ .+.+.++...... .++++++|++ +|++. ..++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCC
Confidence 8877642 15799999987 8888887755433 5899999997 66654 5589
Q ss_pred eEEEEecCCCCcceEEEec
Q 010801 407 LLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~ 425 (501)
.|.++|..+++. ..+++.
T Consensus 355 ~VsViD~~t~k~-~~~i~~ 372 (386)
T 3sjl_D 355 TLYIHDAESGEE-LRSVNQ 372 (386)
T ss_dssp EEEEEETTTCCE-EEEECC
T ss_pred eEEEEECCCCcE-EEEecC
Confidence 999999999854 355543
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=8.3e-10 Score=102.63 Aligned_cols=275 Identities=6% Similarity=-0.023 Sum_probs=159.5
Q ss_pred cceEEEEEccCCCEEEEEe--cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+..++++|+|+++++.. .++.++||.+.+++.. ..|... ....+|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~--------- 66 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF--------- 66 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence 5789999999999888864 2343666766544321 000000 0112233
Q ss_pred ccccceeEEEEeecCCCCEEEEeeC-----CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~-----d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..+..|++. ++++++++-.. ++.|.+||+.+++...........
T Consensus 67 ---~~p~gv~~d--~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------------------------- 115 (343)
T 2qe8_A 67 ---DTVLGIKSD--GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------------------------- 115 (343)
T ss_dssp ---SCEEEEEEC--SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------------------------
T ss_pred ---eEeeEEEEc--CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--------------------------
Confidence 678999996 67766655433 578999999888755443221000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c----CCeEEEEECCCCCeeeeeeecCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
..+...+..+++++++..+..+ . ++.|.+||+. .++..+.
T Consensus 116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~----- 160 (343)
T 2qe8_A 116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARV----- 160 (343)
T ss_dssp -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEE-----
T ss_pred -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEE-----
Confidence 1223456788998865555444 3 6899999998 4444443
Q ss_pred CCCCCcccceE-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+.+|..... ...+.++| ..+.+.+.++.++.|. ..+..++|+|||
T Consensus 161 --~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg 206 (343)
T 2qe8_A 161 --LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAEN 206 (343)
T ss_dssp --CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTS
T ss_pred --ecCCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCC
Confidence 222211100 13455677 7777777777765442 135789999999
Q ss_pred CEEEEEcC--CcEEEEEeeC--CCCc-----ee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 340 QHLLSRDY--MNLKLWDIRM--DSTP-----VA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 340 ~~l~~~~~--~~i~lwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+.|+.++. ..++.++... .... .. ...++.... ..++++++|.++++...++.|
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeE
Confidence 98887643 4444444321 0100 00 111111111 479999999999999999999
Q ss_pred EEEecCCCCcceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.+||.++++ ....... +......+++.+ ++++ +++.+..+. .+|
T Consensus 272 ~~~d~~~G~-~~~~~~~~~~~~p~~va~~~--~g~l-----~v~~~~~~~~~~f 317 (343)
T 2qe8_A 272 GVITSADRA-YKLLVTDEKLSWTDSFNFGS--DGYL-----YFDCNQLHHSAPL 317 (343)
T ss_dssp EEEETTTTE-EEEEEECGGGSCEEEEEECT--TSCE-----EEEECCGGGSGGG
T ss_pred EEEECCCCC-EEEEEECCceecCCeeEECC--CCcE-----EEEeCcccccccc
Confidence 999985553 2222221 234566777776 4555 555554433 444
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=4.3e-09 Score=97.01 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=140.9
Q ss_pred ceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-.....|+|++. ++++...++.|.+||..+++. ..+. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~----------- 89 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP----------- 89 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS-----------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC-----------
Confidence 356789999754 555666788999999876632 1111 12
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+++|. ++++++++. .+ .|.+||..+++.........
T Consensus 90 -~~v~~i~~~--~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~----------------------------------- 129 (326)
T 2ghs_A 90 -FMGSALAKI--SDSKQLIAS-DD-GLFLRDTATGVLTLHAELES----------------------------------- 129 (326)
T ss_dssp -SCEEEEEEE--ETTEEEEEE-TT-EEEEEETTTCCEEEEECSST-----------------------------------
T ss_pred -CcceEEEEe--CCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC-----------------------------------
Confidence 558899997 677766654 44 48999988776543321000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------CeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
......+.+++++|+|+++++. .+ +.|..++ .++.... ..
T Consensus 130 ----------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~ 176 (326)
T 2ghs_A 130 ----------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FA 176 (326)
T ss_dssp ----------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EE
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eC
Confidence 0112467889999999877765 32 3455555 3333221 11
Q ss_pred cccceEEEEEecCCCcEEEEE-eCCCeEEEEEcc--CC-cccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.......++|+|++ +.|+.+ +.++.|.+||+. ++ .... .+.+.. +.........+++.++|.+
T Consensus 177 ~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 177 DISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCE
T ss_pred CCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCE
Confidence 22346789999998 765544 557899999986 44 3211 012211 0001234678999999987
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEEEeC
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 404 (501)
.++.. .+.|.+||.. ++.+..+..+...+ ++++|+ ++++.|+.++.
T Consensus 244 wva~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence 77664 4889999973 66666665444322 689998 88776655443
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=4.8e-09 Score=96.66 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=95.5
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC------CCeE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV 292 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~------dg~i 292 (501)
..+.+++++++|+++++..+ .|.+||..+ +......... .......+.+++++|+| +++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~-g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTAT-GVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTT-CCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCC-CcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence 46888999999987776644 499999873 3332221100 01123468899999999 76665432 2455
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEee-CCC-Cce--eEee
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIR-MDS-TPV--ATFK 366 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~-~~~-~~~--~~~~ 366 (501)
..+| +++.. ..... ......++|+||++.|+.+ + .+.|.+||+. ..+ ... ..+.
T Consensus 164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~ 223 (326)
T 2ghs_A 164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI 223 (326)
T ss_dssp EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence 5555 33221 11111 2346789999999877655 3 3899999985 113 211 1121
Q ss_pred c---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 367 I---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 367 ~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. .... ...++++++|.++++...++.|.+|+..
T Consensus 224 ~~~~~~~~---------------p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 224 DSTGIKGG---------------MDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp ECTTSSSE---------------EEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred ECCCCCCC---------------CCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 1 1111 1579999999988877777899999983
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=1.2e-08 Score=92.57 Aligned_cols=237 Identities=8% Similarity=-0.021 Sum_probs=153.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|++.++...++.|.+||.. ++.. . ..+....
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------------------------~-~~~~~~~---------- 103 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------------------------E-YPLPQPD---------- 103 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------E-ecCCCCC----------
Confidence 3678999999999977776667889999876 4220 0 1111122
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..++.. ++.....
T Consensus 104 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-------------------------------------- 140 (300)
T 2qc5_A 104 --SGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYD-------------------------------------- 140 (300)
T ss_dssp --CCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEcc--------------------------------------
Confidence 457888886 678777777667889999876 5433211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+..+++.++++++++. .++.|..+|.. +. .... . .......+
T Consensus 141 ----------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~ 190 (300)
T 2qc5_A 141 ----------------------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY-P-----LPTNAAAP 190 (300)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E-----CSSTTCCE
T ss_pred ----------------------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe-e-----CCCCCCCc
Confidence 02233467889999999977777 68899999984 33 2221 1 23344568
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..+++++++ +++++....+.|.+||. +++.. .+.. ..+...+.+++++++|++.++.. .+.
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCe
Confidence 899999998 87777767788999998 43321 1111 01124578999999998766664 489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|..||.. ++. ..+....... . +.+++++++|+++++.. . .|..++.+
T Consensus 253 i~~~~~~--g~~-~~~~~~~~~~----------~---~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 253 IGRITND--NTI-QEYQLQTENA----------E---PHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECTT--SCE-EEEECCSTTC----------C---CCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEECCC--CcE-EEEECCccCC----------c---cceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9999873 432 2332211100 1 15899999998766655 4 67666653
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=7.8e-09 Score=97.39 Aligned_cols=297 Identities=9% Similarity=0.048 Sum_probs=176.3
Q ss_pred cCCCEEEEEecC-----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 42 KTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 42 ~~g~~latg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
++++++++.... +.|.++|..+++. +..+..-. .+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v---------------------------v~~I~vG~------------~P- 121 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI---------------------------LGMTDGGF------------LP- 121 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE---------------------------EEEEEECS------------SC-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE---------------------------EEEEECCC------------CC-
Confidence 577777666542 6999999987754 23443222 33
Q ss_pred eEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.++++ ||+++++++. .++.|.++|..+++........... .......+..+.++++..+++
T Consensus 122 -gia~S--pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~ly 192 (426)
T 3c75_H 122 -HPVAA--EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLL 192 (426)
T ss_dssp -EEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEE
T ss_pred -ceEEC--CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEE
Confidence 78887 8898888875 4678999999998877654321000 000012345666778888887
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.......+.+.+.|.........+. .+.. ....|++ ..+++. .||.+.+.+.. ..+...... ..+.
T Consensus 193 V~n~~~~~~VsVID~~t~kvv~~I~---v~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~---~~~~ 260 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLEGKTFDRMLD---VPDC-----YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNT---EVFH 260 (426)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEE---CCSE-----EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEEC---CCCS
T ss_pred EEecCCCCeEEEEECCCCeEEEEEE---cCCc-----eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEee---eeec
Confidence 7765556789999988754332222 1111 1223333 333333 66777766764 333321110 0011
Q ss_pred Ccccc-eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
....+ ...+.+.+++ ..++..+..+.|.+.|+........ ..+.. .. ..... ..........++++|+++.+.
T Consensus 261 v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~-~~-~~~i~-~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 261 TEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFR--APIEA-LT-EAERA-DDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp CTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEEC--CCEES-SC-TTTGG-GTEEECSSSCEEEEGGGTEEE
T ss_pred cCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEe--eeeee-cc-ccccc-cccccCCceeeEEcCCCCEEE
Confidence 11111 1235678888 6666667889999999976542110 11110 00 00000 000012234578999988776
Q ss_pred EEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCeEEE
Q 010801 344 SRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRI 410 (501)
Q Consensus 344 ~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~i 410 (501)
+.. .+.|.++|+.+ .+.+.++.....+ ..++|+|||+ ++++.. .++.|.+
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEEEEEcCCCCeEEE
Confidence 542 24799999987 8888888755543 5899999999 888877 5999999
Q ss_pred EecCCCCcceEEE
Q 010801 411 FSHGVGSAGGITV 423 (501)
Q Consensus 411 wd~~~~~~~~~~~ 423 (501)
+|+.+++.+ .++
T Consensus 398 ID~~t~kvv-~tI 409 (426)
T 3c75_H 398 YDAATGEEL-RSV 409 (426)
T ss_dssp EETTTCCEE-EEE
T ss_pred EECCCCCEE-EEe
Confidence 999998544 444
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.3e-08 Score=96.68 Aligned_cols=215 Identities=11% Similarity=0.076 Sum_probs=129.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.....|+|. ++++++++...++.|++||..++......
T Consensus 131 ~~P~~la~d--~~g~lyv~d~~~~~I~~id~~~g~~~~~~---------------------------------------- 168 (409)
T 3hrp_A 131 KYMWGIAAV--GNNTVLAYQRDDPRVRLISVDDNKVTTVH---------------------------------------- 168 (409)
T ss_dssp CCEEEEEEC--STTEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CCceEEEEe--CCCCEEEEecCCCcEEEEECCCCEEEEee----------------------------------------
Confidence 356788886 77777777677789999999877654432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCC-CCcccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNM-DDLTEV 269 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (501)
.. ..... ++|+++++.|+++ .++ .|.+++...... ...+. .+ ......
T Consensus 169 ---------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g----~~~~~~~~~ 220 (409)
T 3hrp_A 169 ---------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIG----QLGSTFSGK 220 (409)
T ss_dssp ---------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEE----ECCTTSCSC
T ss_pred ---------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEee----eccchhcCC
Confidence 11 11223 8899999988887 544 788888873332 22110 01 113456
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc--eeEEEEeeCCCEEE-EEc
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLL-SRD 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~~l~-~~~ 346 (501)
+.+++++|++ ..|+++..++.|+.||..++.. ..+.. ... .++... ...++|+|++..|. +-.
T Consensus 221 p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 221 IGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CCBCEECTTS-SEEEEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred cEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeC
Confidence 6889999954 4455577789999999987642 22211 000 001111 23999999644444 444
Q ss_pred C-CcEEEEEeeCCCCceeEeeccccccccccc-cCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCC
Q 010801 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-LYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 416 (501)
. +.|+.|+.. +. +..+.++..... ..+ ............++++++|+++++-+ .++.|+.|++.++
T Consensus 287 ~~~~I~~~~~~--g~-~~~~~g~~~~~g-~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 287 NLSSVYKITPD--GE-CEWFCGSATQKT-VQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTTEEEEECTT--CC-EEEEEECTTCCS-CBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCCEEEEEecC--CC-EEEEEeCCCCCC-cCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 3 889999875 33 344443320000 000 00000011126899999999888888 8999999998766
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=4e-08 Score=91.46 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=96.0
Q ss_pred EEEecCCCCEEEEEc--------------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCC
Q 010801 223 SISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~ 280 (501)
.+.|+|+++.+++++ +.+|.+||+.+ ++....+.+ .........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~v-----g~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTL-----GEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEES-----CTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEec-----CCCCCccceeEeeECCCC-
Confidence 577899999888873 78999999994 555555432 112233456666 9999
Q ss_pred cEEEEEe------CCCeEEEEEccCCcccccccceeecccccCCCc------ceeeecccceeEEEEeeCCCEEEEEc--
Q 010801 281 NLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIASISDIKFANDGQHLLSRD-- 346 (501)
Q Consensus 281 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~sp~~~~l~~~~-- 346 (501)
+++++++ .+++|.+|....+... ..+++.. ...+... ..+.+-......+.++|||++|.++.
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg 341 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence 6665555 5678888776654321 1122211 0000000 00011124578999999999998774
Q ss_pred CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 347 YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 347 ~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
.+.|.+||+.... +.+..+...... ..............-..++++|||++|+++.
T Consensus 342 ~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 342 IGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 3999999986322 333444322100 0000000000000015799999999999887
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=2.4e-08 Score=92.73 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=132.5
Q ss_pred CcccceEEEEecCCCCEEEEE-c-----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-- 287 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-- 287 (501)
.+...+..+++.++++++++. . +..|.+||+. .++....+.+.. ....+...+..++++|++...+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~-~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPP-PITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCT-TTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECCh-hhcccccccceEEEecCCCEEEEEcCcc
Confidence 456688999999998877665 3 6899999998 455455443321 11223445689999986525555555
Q ss_pred -CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 288 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 288 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
.++.|.+||+.+++.. +.+..|.. .......+.++|+.+.+.+ ++.++.|..
T Consensus 142 ~~~~~i~v~d~~~g~~~----r~~~~~~~------------~~~~~~~~~~~g~~~~~~~~~g~~~~~~~---------- 195 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAA----RVLQGYPG------------IAPEDIDLVIDGVPVQIGQPDGTVIRPHL---------- 195 (343)
T ss_dssp GGGCEEEEEETTTCCEE----EECTTCTT------------TSCCSCCCEETTEECBEECTTSCEECCCC----------
T ss_pred CCCCeEEEEECCCCCEE----EEecCCCc------------ccccccceeECCEEEEeccCCCceeceec----------
Confidence 6789999999877532 22222100 0000133455666655543 355544321
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-eEEEEecC---CCC----cc--eEEEecccCcccceee
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG---VGS----AG--GITVEAGKNENRKPIL 435 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~---~~~----~~--~~~~~~~~~~v~~~~~ 435 (501)
.. ..++|+|||+.|+.+..++ .|..++.. .+. .. .....++......+++
T Consensus 196 ----~~----------------~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 196 ----GV----------------NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ----CE----------------EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ----cc----------------ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 11 5799999999888877765 45444432 110 00 0122234445567788
Q ss_pred ccCCccccCccceeeeecccce-eeccc-cCCcccccc--cCCCeEEEEEccCCCEEEEee
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN--LSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~-~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+ ++.+ .++....+. ..|+. .+....... .......++|.+++.++++.+
T Consensus 256 d~--~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 256 DK--DHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CT--TCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CC--CCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 76 5666 666666666 88866 433222221 234678999999998877766
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.2e-08 Score=94.58 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=57.1
Q ss_pred EEEeeCCCEEEEE-c-C--------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEE
Q 010801 333 IKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT 401 (501)
Q Consensus 333 ~~~sp~~~~l~~~-~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s 401 (501)
++++||++.+..+ . . +.+.++|+.+ .+.+.++.....+ ..++|+|||+ ++++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence 7899999877754 2 2 3566999987 7778887765543 5899999998 5566
Q ss_pred Ee-CCCeEEEEecCCCCcceEEEeccc
Q 010801 402 GS-YSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 402 ~~-~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
.. .++.|.++|+.+++ ...+++...
T Consensus 332 ~~~~~~~VsVID~~t~k-vv~~I~vg~ 357 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQ-DQSSVELDK 357 (368)
T ss_dssp EETTTTEEEEEESSSCE-EEEECCCCS
T ss_pred ccCCCCeEEEEECCCCc-EEEEEECCC
Confidence 66 59999999999884 335555443
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.07 E-value=1.3e-07 Score=89.10 Aligned_cols=234 Identities=10% Similarity=0.011 Sum_probs=130.8
Q ss_pred EEEecCCCCEEEEE-c----------CCeEEEEECCCCCeeeeeeecC-CCCCCCcccceEEEEEecCCCcEEEEEeC--
Q 010801 223 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS-- 288 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-- 288 (501)
.++++|||+.++++ . ++.|.++|..+ .+....+.+. .... ........+.++|+| ++++++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v~g~~r~-~~g~~P~~~~~spDG-k~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIELPDAPRF-LVGTYQWMNALTPDN-KNLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCC-CBSCCGGGSEECTTS-SEEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEECCCcccc-ccCCCcceEEEcCCC-CEEEEEecCC
Confidence 68999999988876 3 57899999994 4455544322 1111 011234578999999 88888764
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CE-EEEEcCCcEEEEEeeCCCCceeEe-
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH-LLSRDYMNLKLWDIRMDSTPVATF- 365 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~-l~~~~~~~i~lwd~~~~~~~~~~~- 365 (501)
++.|.+.|+.+++.. ..+.. ... ....|++ +. ++...+|.+.+.+... ++.....
T Consensus 199 ~~~VsVID~~t~kvv----~~I~v---------------~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~ 256 (426)
T 3c75_H 199 APAVGVVDLEGKTFD----RMLDV---------------PDC--YHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT 256 (426)
T ss_dssp SCEEEEEETTTTEEE----EEEEC---------------CSE--EEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred CCeEEEEECCCCeEE----EEEEc---------------CCc--eeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence 588999999998654 33332 011 2334443 22 2233457777777732 4443221
Q ss_pred ---eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce-EEEec----------ccCccc
Q 010801 366 ---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEA----------GKNENR 431 (501)
Q Consensus 366 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~----------~~~~v~ 431 (501)
...... ++ ..+.+++++..++..+..+.|.+.|+....... ..+.. ......
T Consensus 257 ~~~~v~~~p------------~~--~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 257 EVFHTEDEL------------LI--NHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp CCCSCTTSC------------BC--SCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred eeeccCCCc------------ee--eEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 111111 10 246789998888777888999999987542110 11110 011122
Q ss_pred ceeeccCCccccCccceeeeecc-------cce-eec--cccC-CcccccccCCCeEEEEEccCCC-EEEEee--CCeEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLY-------RQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLF 497 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~-------~~~-~iw--~~~~-~~~~~~~~~~~i~~~~~sp~~~-~la~~~--~~~~~ 497 (501)
.+++++ ++.. .+++... .+. .++ +... ..............++|+|||+ .|+++. ++.+.
T Consensus 323 ~va~s~--dg~r----lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 323 QTAYHR--QSDR----IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp CEEEEG--GGTE----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eeEEcC--CCCE----EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 356666 3332 0232211 012 444 2221 1111222233577899999999 888777 57788
Q ss_pred EEeC
Q 010801 498 FHYA 501 (501)
Q Consensus 498 i~~~ 501 (501)
|+++
T Consensus 397 VID~ 400 (426)
T 3c75_H 397 IYDA 400 (426)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8863
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=1.1e-08 Score=104.42 Aligned_cols=237 Identities=10% Similarity=0.028 Sum_probs=143.2
Q ss_pred CCcccceEEEEecCCCCEEEEE------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 215 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
.++...+..++|||||++|+.+ +...|++||+.++. .+... +. ......++|+ |+ +.|+.++.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~------~~--~~k~~~~~Ws-Dg-~~l~y~~~ 193 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLETP------LK--DVKFSGISWL-GN-EGFFYSSY 193 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEEE------EE--EEESCCCEEE-TT-TEEEEEES
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCccc------cC--CceeccEEEe-CC-CEEEEEEe
Confidence 3455678889999999999854 23579999999544 33210 11 1113567899 98 88888877
Q ss_pred CC-------------eEEEEEccCCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEE-c---C-Cc
Q 010801 289 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN 349 (501)
Q Consensus 289 dg-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~-~---~-~~ 349 (501)
+. .|++|++.+..... ..++.. .. |...+..+.|+|||++|+.. . . +.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 64 38999987754221 123332 11 23457789999999988643 2 2 58
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCC---CeEEEEecCCCCc-ceEEEe
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS---NLLRIFSHGVGSA-GGITVE 424 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~d---g~i~iwd~~~~~~-~~~~~~ 424 (501)
|+++|+.........+..+.... ... |+++|..|+ ....+ +.|..+++.++.. ....+.
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 99999875333455555544432 233 666666554 44433 6899999987643 124566
Q ss_pred cccCcccceeeccCCccccCccceeeeecc-cce---eeccccCCcccc--cccCCCeEEEEEccCCCEEEEeeC-----
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLY-RQA---HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACANG----- 493 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-~~~---~iw~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~----- 493 (501)
.|...+. .+++ ++.. |+.... ++. .+|+........ ......+..++++|+++.|+....
T Consensus 325 ~~~~~~~--~~s~--~g~~-----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP 395 (693)
T 3iuj_A 325 PERQQVL--TVHS--GSGY-----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP 395 (693)
T ss_dssp CCCSSCE--EEEE--ETTE-----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred cCCCCEE--EEEE--ECCE-----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC
Confidence 6666554 6666 4444 554444 443 444443322222 223346777888999887776542
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
..++.|+
T Consensus 396 ~~l~~~d 402 (693)
T 3iuj_A 396 PTLYRFE 402 (693)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 4577765
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=1.3e-06 Score=77.68 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=103.2
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CCeEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVR 293 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~ 293 (501)
.....+++.+++..+..+ ..+.|.+++++ +....... .........++++|++ ..|+.+.. .+.|.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEE
Confidence 356789999876666554 67899999987 32222111 1112346899999975 44444443 46888
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
.+++..... +.+.. ..-.....++++|++..|..++ . +.|.++|... ......+.....+
T Consensus 150 ~~~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P 211 (267)
T 1npe_A 150 TSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP 211 (267)
T ss_dssp EEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred EEecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc
Confidence 888764321 11111 0013568899999887776654 3 8899999863 2222222221111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA 438 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~ 438 (501)
..++.. ++.++++....+.|..+|..+++.+ .++.... .....+++.|.
T Consensus 212 ----------------~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 212 ----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp ----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred ----------------eEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCc
Confidence 456664 4445555556789999999887443 5554433 23566666663
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=1.9e-07 Score=94.59 Aligned_cols=195 Identities=10% Similarity=0.070 Sum_probs=111.6
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCC--CcccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~ 280 (501)
.+++.|++.+++.+ .++ .|..+|.++++..... ...+...- .......-+....+|.
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ecCCCcccccccCCCcEEEecccCCc
Confidence 56778888888776 543 5888999855544432 11111000 0012223333444552
Q ss_pred --cEEEEEeCCCeEEEEEccCCcccccccceeeccccc------CCCc--------------cee---eecccceeEEEE
Q 010801 281 --NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES------HGSK--------------SFF---TEIIASISDIKF 335 (501)
Q Consensus 281 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~------~~~~--------------~~~---~~h~~~i~~~~~ 335 (501)
..++.++.+|.|+++|..+++.+... ...... ...+ ... .|.. .-..+++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~ 400 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAK----NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSF 400 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEE----ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEE
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccc----cccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceE
Confidence 46888899999999999999764211 100000 0000 000 0000 1136788
Q ss_pred eeCCCEEEEEc--------------------------------------------CCcEEEEEeeCCCCceeEeeccccc
Q 010801 336 ANDGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 336 sp~~~~l~~~~--------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
+|++.++++.. .+.|..||+.+ ++.+-++......
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~ 479 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW 479 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC
Confidence 99887776531 16788999986 7766666533221
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-ccCcccceeeccCCcccc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARR 443 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~ 443 (501)
....+..++.+++.++.||.+++||..+++.+ ..+.. +......+.+.. +|+.
T Consensus 480 ----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~--~G~~ 533 (677)
T 1kb0_A 480 ----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMV--DGRQ 533 (677)
T ss_dssp ----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE--TTEE
T ss_pred ----------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEe--CCEE
Confidence 24456667788888999999999999999655 55543 333334444433 4543
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.91 E-value=3.7e-07 Score=92.73 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=113.3
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~ 280 (501)
.+++.|++.+++.+ .++ .|..+|.++++..... ...+...-. ....+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCC-
Confidence 57788888888887 665 3999999966554432 111110000 11222222333455
Q ss_pred c---EEEEEeCCCeEEEEEccCCcccccccc---eeecccc---------------cCCCcc--eeeec--ccceeEEEE
Q 010801 281 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE---------------SHGSKS--FFTEI--IASISDIKF 335 (501)
Q Consensus 281 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~~---------------~~~~~~--~~~~h--~~~i~~~~~ 335 (501)
+ .++.++.+|.++++|.++++.+..... .+..+-. .+.... ..++. ...-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 788999999999999999976521000 0000000 000000 00000 001234788
Q ss_pred eeCCCEEEEEc----------------------------------------------CCcEEEEEeeCCCCceeEeeccc
Q 010801 336 ANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 336 sp~~~~l~~~~----------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+|+..++++.. ++.|+.||+.+ ++.+-.+..+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 88877766531 25688899886 77766665443
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccCCcccc
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARR 443 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 443 (501)
.. ..-.+...+.+++.|+.||.++.||.++|+.+ ..++... .....+.+.. +|+.
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~--~G~q 531 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSV--DGEQ 531 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE--TTEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEE--CCEE
Confidence 22 23355567789999999999999999999655 5555433 2234555544 5654
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.88 E-value=4.1e-06 Score=78.71 Aligned_cols=154 Identities=10% Similarity=0.037 Sum_probs=80.4
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
..++.+ .++.|..+|..++...... .......... ........ + ..+++++.++.|..+|..+++... .
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~--~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w----~ 213 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLR--GESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIW----Q 213 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----C--CCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEE----E
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeec--CCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEE----E
Confidence 366666 8899999999855544332 1110000000 00112222 3 457778889999999999886432 1
Q ss_pred eecccccCCCcceeeecccce-eEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
... . .+.....+... ..+ ..... .++ .+..+ .++.+..+|.++ ++.+........
T Consensus 214 ~~~-~-~~~~~~~~~~~-~~~~~~p~~-~~~-~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~----------------- 270 (376)
T 3q7m_A 214 QRI-S-QATGSTEIDRL-SDVDTTPVV-VNG-VVFALAYNGNLTALDLRS-GQIMWKRELGSV----------------- 270 (376)
T ss_dssp EEC-C-C------------CCCCCCEE-ETT-EEEEECTTSCEEEEETTT-CCEEEEECCCCE-----------------
T ss_pred Eec-c-cCCCCcccccc-cccCCCcEE-ECC-EEEEEecCcEEEEEECCC-CcEEeeccCCCC-----------------
Confidence 111 0 00000000000 001 11111 234 44444 468999999986 666554432111
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+.. ++..|..++.++.|..+|..+++.+
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 23333 3567788888999999999998543
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.86 E-value=7.6e-08 Score=89.14 Aligned_cols=254 Identities=9% Similarity=0.034 Sum_probs=137.9
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC-Ccchh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (501)
.+.|+|||++|+++. .++.|.+||..+++.. .++..+ .+.|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---------------------------~~I~v~~~~~~- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSCSC-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------EEEECCCcccc-
Confidence 799999999998886 3688999999987642 333211 0000
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeC--CCeEEE--EeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~l--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
........++++ |||++++++.. +..+.+ +|..+ . ...... . ++ .....+......
T Consensus 121 -----~~g~~P~~ia~S--pDGk~lyVan~~~~~~v~V~~iD~~t--v-~~i~v~--~---~~-~~~p~g~~~~~~---- 180 (368)
T 1mda_H 121 -----SVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASD--D-QLTKSA--S---CF-HIHPGAAATHYL---- 180 (368)
T ss_dssp -----CBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEE--E-EEEECS--S---CC-CCEEEETTEEEC----
T ss_pred -----ccCCCcceEEEc--CCCCEEEEEccCCCCeEEEEEEchhh--c-eEEECC--C---ce-EEccCCCeEEEE----
Confidence 000124568887 89999998864 467888 99887 2 222110 0 00 000011111111
Q ss_pred CcccccceeccCcceEEEeccCcee--eeeeE---eecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFN 254 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~ 254 (501)
...++.+...+.+.... .+... ....-...+. . .+++..++.. . +.|.+.|..... ....
T Consensus 181 --------~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 181 --------GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA 247 (368)
T ss_dssp --------CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred --------EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence 12244444455443000 00000 0001112222 3 5555565555 7 999999986322 2222
Q ss_pred eeecCCCCC--CC-cccceEEEEEecCCCcEEEEEeC---------CCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 255 IVDMKPSNM--DD-LTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 255 ~~~~~~~~~--~~-~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.+.+..... .+ .......++++|++ +.++++.. ++.+.++|+.+++.. ..+..
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v---------- 312 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN---------- 312 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE----------
T ss_pred EEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC----------
Confidence 211110000 00 01111226899998 65555432 235679999998654 33333
Q ss_pred eeecccceeEEEEeeCCCE-EEEEc--CCcEEEEEeeCCCCceeEeeccccc
Q 010801 323 FTEIIASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~-l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
......++|+|||++ +++.. ++.|.++|+.+ .+.+.++.....+
T Consensus 313 ----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp ----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred ----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 135899999999984 44444 59999999997 8888888766654
No 230
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=5.9e-05 Score=78.40 Aligned_cols=247 Identities=11% Similarity=0.074 Sum_probs=137.4
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCC-CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|.++...++|.+.+...+ -|.+||.. ....... ...+. ...-....|.++...++| .+ -.|+.++-|..|+
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~~-~~~~~~~~~l~~~~i~~i~~D~~g-~l-Wigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFASY-SSNPVENGSLSQRSVRSIFMDSQG-GM-WLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEEE-CCCTTSTTSCSSSCEEEEEECTTS-CE-EEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEEE-ecCCCCCCCCCCCcEEEEEEeCCc-CE-EEEECCCCeEEeC
Confidence 356889988888876665555 58889977 3333221 11110 011234679999999987 64 4567777788998
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccc-cccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~ 375 (501)
..+... ..+.. ...+.. -....|.++...++|.+.+...++-|..||..+ ++ ...+.... .....
T Consensus 337 ~~~~~~-----~~~~~-~~~~~~-----l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~- 402 (795)
T 4a2l_A 337 PIRNRF-----KNIRN-IPYKNS-----LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARG- 402 (795)
T ss_dssp GGGGSS-----EEECC-CTTSSS-----CSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECCC------C-
T ss_pred CCcccc-----eEEcC-CCCCCC-----CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccC-
Confidence 765432 11111 000000 013568999988888866655556899998763 32 33332111 00000
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-----ccCcccceeeccCCccccCccceee
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
+ .... |.+++..++++.|..|+.++-|.+||..+++. ..+.. ....|.++...+ ++.+ .+
T Consensus 403 --l-~~~~---v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~--~g~l-----wi 467 (795)
T 4a2l_A 403 --I-GSNN---IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDG--EGNL-----WL 467 (795)
T ss_dssp --C-SCSC---EEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECS--SSCE-----EE
T ss_pred --C-CCcc---EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECC--CCCE-----EE
Confidence 0 0111 26888888888566677777799999887632 22221 223455554433 4443 22
Q ss_pred eecccceeeccccCCccccc-------c-cCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 451 RGLYRQAHENSSSGHHELSY-------N-LSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 451 ~~~~~~~~iw~~~~~~~~~~-------~-~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
|...|...++......... . ....|.++...++|.+.+... ++++.|+
T Consensus 468 -gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 468 -GTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp -EESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred -EecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 2233434443221111111 1 235789999999998766555 7888875
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=101.41 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=95.3
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
++..|++++.||.|+.||..+|+.. -.+.. . .+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~~ 46 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPTH 46 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------CceecceE
Confidence 5778999999999999999988652 11221 1 12233332
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
.++..+++++.|+.|+.||..+++...........
T Consensus 47 --~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~------------------------------------------- 81 (369)
T 2hz6_A 47 --VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE------------------------------------------- 81 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-------------------------------------------
T ss_pred --cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------------------------------------------
Confidence 45667888889999999999887754322110000
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
.....++ +. ++..++++ .++.|+.||..+++.... +..+. ...++|++ .
T Consensus 82 ------------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~----~~~~~p~~-~ 131 (369)
T 2hz6_A 82 ------------LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF----ADSLSPST-S 131 (369)
T ss_dssp ------------HHTTCSC----C------CCCCEEEEEEEEECCC----------------------------------
T ss_pred ------------ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC----cccccccC-C
Confidence 0000111 11 23355666 889999999985544332 22221 23456677 8
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC----CCEEEEEcCCcEEEEEeeC
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRM 357 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~~~~~~~i~lwd~~~ 357 (501)
.+++++.|+.|+.||.++++... .+.. ......++.++ +.+++...++.|+.||.++
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W----~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRW----NATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCC----EEEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred EEEEEecCCEEEEEECCCCCEEE----eEec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 88899999999999999987542 1111 00122223332 4444444569999999986
Q ss_pred CCCceeEee
Q 010801 358 DSTPVATFK 366 (501)
Q Consensus 358 ~~~~~~~~~ 366 (501)
++.+..+.
T Consensus 193 -G~~~W~~~ 200 (369)
T 2hz6_A 193 -GDVLWIQN 200 (369)
T ss_dssp -CCEEEEEE
T ss_pred -CcEEEEec
Confidence 77666655
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=102.13 Aligned_cols=186 Identities=9% Similarity=0.045 Sum_probs=98.1
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
++..+++++.|+.|+.||..+++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 567899999999999999999886654311
Q ss_pred eeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceE-EEEEecCCCcE
Q 010801 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNL 282 (501)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~v~~~p~~~~~ 282 (501)
..+.+..+..++..++++ .|+.|+.||..+++.... ...+. ..+. +..+. .+ ..
T Consensus 38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~--------~~~~~~~~~~~sp~~~-~~-~~ 94 (369)
T 2hz6_A 38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK--------LPFTIPELVQASPCRS-SD-GI 94 (369)
T ss_dssp -------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE--------CSCCHHHHHTTCSCC-------
T ss_pred -------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee--------eeccCccccccCceEe-cC-CE
Confidence 122222334567777877 999999999974443322 11111 0010 11111 23 56
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
+++++.++.|+.||..+++... .+.. + . ...++|++..+++++ ++.|+.||.++ ++.
T Consensus 95 v~~g~~dg~v~a~D~~tG~~~w----~~~~-------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~ 152 (369)
T 2hz6_A 95 LYMGKKQDIWYVIDLLTGEKQQ----TLSS-------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-REL 152 (369)
T ss_dssp CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSC
T ss_pred EEEEeCCCEEEEEECCCCcEEE----EecC-------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCE
Confidence 7788889999999999987542 2222 0 1 133456777777765 59999999986 776
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCC---cEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+..... ...+++.+. ..+++++.||.|+.||..+++.+ ....
T Consensus 153 ~W~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY-----------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL-WIQN 200 (369)
T ss_dssp CCEEEEEEE-----------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE-EEEE
T ss_pred EEeEecccc-----------------cCccccCCccccceEEEECCCCEEEEEECCCCcEE-EEec
Confidence 655543221 123333332 45677889999999999998543 4443
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.82 E-value=4.9e-06 Score=77.59 Aligned_cols=170 Identities=11% Similarity=0.030 Sum_probs=99.4
Q ss_pred eEEEEecCCCCEEEEE-cC------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe------
Q 010801 221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------ 287 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------ 287 (501)
-..+...|+| +++++ .+ +.|.+.|.. +.+.+..+... .+....-..+-|+|++ +.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~ 212 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPNT 212 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHHH
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCccc
Confidence 3456778999 77775 44 789999998 45555554211 1111223467889999 8887774
Q ss_pred -------------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE--eeCCCEEEEE-c-----
Q 010801 288 -------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR-D----- 346 (501)
Q Consensus 288 -------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~~~-~----- 346 (501)
...+|.+||+.+++.. +.+.. .. .......+.| +|+++++.++ .
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-GE----------ENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-CT----------TEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred cccccchhhhhhccCCEEEEEECCCCcEe----eEEec-CC----------CCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 3789999999986543 33332 00 0122345555 9999987654 3
Q ss_pred C-CcEEEEEeeCCCCc--eeEeecccccc-ccccccC----C-CCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 347 Y-MNLKLWDIRMDSTP--VATFKIHEHLR-PKLCDLY----N-NDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~--~~~~~~~~~~~-~~~~~~~----~-~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
. ++|.+|..+. ++. .+.+......+ ..+.++. . ... ...+.+|+||++|.++.. .+.|.+||+...
T Consensus 278 Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~---pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 278 LSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL---VTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCC---CCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCc---eeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 3 7888877653 321 11111111000 0000000 0 001 168999999999887665 789999998643
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=1.8e-06 Score=83.40 Aligned_cols=184 Identities=8% Similarity=-0.012 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC---------------eEEEEEccCCcc
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSAL 302 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---------------~i~~wd~~~~~~ 302 (501)
++.+.+.|..+ .+....+. ..+ ....++++|+| +++++.+.+. .|.+.|......
T Consensus 174 ~~~vtvID~~t-~~v~~qI~-----Vgg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 174 VNVFTAVDADK-WEVAWQVL-----VSG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp EEEEEEEETTT-TEEEEEEE-----ESS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CceEEEEECCC-CeEEEEEE-----eCC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 45788999884 34443331 112 23567789998 8777777553 355555433210
Q ss_pred c--------ccccceeecccccCC-C-cceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCC----------
Q 010801 303 C--------DHSARILRDAAESHG-S-KSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST---------- 360 (501)
Q Consensus 303 ~--------~~~~~~~~~~~~~~~-~-~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~---------- 360 (501)
. ...+.+++. ..... . ...++ -.....++.++|||+++++++ +.+|.++|+.+ .+
T Consensus 244 ~v~~Gk~~~i~~V~VID~-~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~ 320 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDG-RKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPR 320 (595)
T ss_dssp HHHHTCSEEETTEEEEEC-SGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGG
T ss_pred eccCCCeeEECcEEEEeC-cccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcc
Confidence 0 011222222 11000 0 00111 124568899999999998775 49999999975 21
Q ss_pred --ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC---------CcceEEEecccCc
Q 010801 361 --PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE 429 (501)
Q Consensus 361 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~ 429 (501)
..........+ ..++|+|+|...++.-.|+.|.+||++.. ......+..|..+
T Consensus 321 ~~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 321 SAVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 12222222222 68999999954556667999999999762 2345666665443
Q ss_pred -----ccceeeccCCccccCccceeeeecccce
Q 010801 430 -----NRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 430 -----v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
......++ +|++ |++..+-.+
T Consensus 385 Gh~~~~~g~t~~~--DGk~-----l~~~Nk~sk 410 (595)
T 1fwx_A 385 GHLKTVMGETLDA--TNDW-----LVCLSKFSK 410 (595)
T ss_dssp EEEEETTTTSTTC--CSSE-----EEEEESCCT
T ss_pred ccceeccceEeCC--CCCE-----EEEcCCCCc
Confidence 23334444 7887 666654443
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.7e-05 Score=70.47 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=129.3
Q ss_pred cceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..++|++++..|..+. .++.|.+++..++... ..+....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---------------------------~~~~~~~---------- 78 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL---------- 78 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC----------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------------------------EEEECCC----------
Confidence 4578999999776666554 5678999998754321 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.....+++. +++..++.+ ...+.|.+++..........
T Consensus 79 --~~p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------------------------------------- 117 (267)
T 1npe_A 79 --GSPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLF------------------------------------- 117 (267)
T ss_dssp --CCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------------------------
T ss_pred --CCccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEEE-------------------------------------
Confidence 346788886 555555444 46678888887643321111
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c--CCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.........++++|++..|..+ . .+.|..++++ +.. ...+ ....
T Consensus 118 ------------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~-~~~~------~~~~ 165 (267)
T 1npe_A 118 ------------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN-RRIL------AQDN 165 (267)
T ss_dssp ------------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC-CEEE------ECTT
T ss_pred ------------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCC-cEEE------EECC
Confidence 1112345789999966665554 3 4688888887 322 2211 1112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
......++++|++..++++-...+.|..+|....... ..... ......++. ++..|..++
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~--d~~~lyva~ 225 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTS--YGKNLYYTD 225 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEE--ETTEEEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEE--eCCEEEEEE
Confidence 2356899999987245555556789999998754321 11111 112345554 345555443
Q ss_pred -C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 347 -Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 347 -~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
. +.|..+|..+ ++.+..+.......+ ..+++.|++.
T Consensus 226 ~~~~~v~~~d~~~-g~~~~~i~~g~~~~p--------------~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAI-SKEMDTFHPHKQTRL--------------YGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTT-TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred CCCCeEEEEeCCC-CCceEEEcccccccc--------------ceeeecCccC
Confidence 3 8999999875 777777754332111 5788888764
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.75 E-value=7.7e-07 Score=81.91 Aligned_cols=211 Identities=10% Similarity=0.037 Sum_probs=118.6
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
+..+..+ .++.|..+|.. +...... ......+.++...+++ . +..++.++.|..+|.. ++.. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence 3456666 78999999987 5443332 1122334556667676 5 5667788999999988 5432 1
Q ss_pred eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.+.. ....+.++...+++.+.++. +.|..+| .+ ++.+..+......+ .
T Consensus 171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~ 218 (330)
T 3hxj_A 171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T 218 (330)
T ss_dssp EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence 1111 12346667777788766554 8899999 43 66555554332222 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc-
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH- 466 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~- 466 (501)
++...++|.+ ..++.++.|..++. ++... ..+......+..+.... ++. +..++.++. ..++.....
T Consensus 219 ~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~-~~~~~~~~~~~~~~~~~--~g~------l~v~t~~ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 219 RPAISEDGTI-YVTSLDGHLYAINP-DGTEK-WRFKTGKRIESSPVIGN--TDT------IYFGSYDGHLYAINPDGTEK 287 (330)
T ss_dssp CCEECTTSCE-EEEETTTEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TSC------EEEECTTCEEEEECTTSCEE
T ss_pred ceEECCCCeE-EEEcCCCeEEEECC-CCCEe-EEeeCCCCccccceEcC--CCe------EEEecCCCCEEEECCCCcEE
Confidence 6788888764 45667788888874 34333 44444333333444432 333 455555644 455333222
Q ss_pred ccccccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 467 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 467 ~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
.........+.++...+++.+.+.+.++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 111122345566777777776554444445543
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.71 E-value=0.00018 Score=74.72 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=133.3
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
...|.++...++|.+.+...++-|..|+... .. ...+...+..-.-....|.++...++| ++. .|+.++-|..||.
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g-~lW-iGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR-NR-FKNIRNIPYKNSLSDNVVSCIVEDKDK-NLW-IGTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGG-GS-SEEECCCTTSSSCSCSSEEEEEECTTS-CEE-EEESSSCEEEECT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCc-cc-ceEEcCCCCCCCCCCCeeEEEEECCCC-CEE-EEECCCCeEEEcC
Confidence 4578999999998766655777888888762 22 221111110011134568999988887 644 4777777999998
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
.++... .+......+. . .-....|.++...++|+.|..|+ ++.|.+||..+ ++ ...+.......
T Consensus 385 ~~~~~~-----~~~~~~~~~~--~--~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l---- 449 (795)
T 4a2l_A 385 ITQRFT-----SYTLQEDESA--R--GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQL---- 449 (795)
T ss_dssp TTCCEE-----EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCC----
T ss_pred CCCcEE-----EEecCCCCcc--c--CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCc----
Confidence 765421 1111000000 0 00125688999888898344444 47799999864 33 33333211000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-------ccCcccceeeccCCccccCcccee
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-------GKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.... +.++...++|++.+.. .+ -+.+|+..+++. ..+.. ....+.++...+ ++++ .
T Consensus 450 ---~~~~---v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~--~g~l-----W 512 (795)
T 4a2l_A 450 ---VNEN---VYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF--TTIEKEKDGTPVVSKQITTLFRDS--HKRL-----W 512 (795)
T ss_dssp ---SCSC---EEEEEECSSSCEEEEE-SS-CEEEEETTTTEE--EECCBCTTCCBCCCCCEEEEEECT--TCCE-----E
T ss_pred ---CCCe---eEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE--EEccccccccccCCceEEEEEECC--CCCE-----E
Confidence 0111 2688888888866654 44 478889876522 22211 123455554443 4544 2
Q ss_pred eeecccceeeccccCCcccc-------cccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 450 TRGLYRQAHENSSSGHHELS-------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 450 ~~~~~~~~~iw~~~~~~~~~-------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+ |...|...|+........ .-....|.++...++|++.+... ++++.|+
T Consensus 513 i-gt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d 568 (795)
T 4a2l_A 513 I-GGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFN 568 (795)
T ss_dssp E-EESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEE
T ss_pred E-EeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeEC
Confidence 2 222343444322111110 11245789999999988665444 4888875
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=7.5e-06 Score=79.17 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=94.2
Q ss_pred cCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE-e-cCCCcEEEEEe---------------
Q 010801 227 NSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS--------------- 287 (501)
Q Consensus 227 ~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-p~~~~~l~~~~--------------- 287 (501)
.+||+++... .+++|.+.|+. ..++.+++.+. ....+..+++ . |++ +++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred CcCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence 3588888776 67889999999 55666654322 1234678887 4 898 7777774
Q ss_pred ---CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC----------------
Q 010801 288 ---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM---------------- 348 (501)
Q Consensus 288 ---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~---------------- 348 (501)
.++.+.+.|..+.+.. ..+.. .+....++++|+|+++++.+.+
T Consensus 170 ~~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp GGGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred ccccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 2467889999876543 22211 1234678899999988876421
Q ss_pred -----------------------cEEEEEeeCC-CCc-eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 349 -----------------------NLKLWDIRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 349 -----------------------~i~lwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
.|.+.|.++. ++. +..+.....+ .++.++|||+++++++
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAG 295 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEEC
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeC
Confidence 2344444320 111 2333322222 5799999999877655
Q ss_pred -CCCeEEEEecCCC
Q 010801 404 -YSNLLRIFSHGVG 416 (501)
Q Consensus 404 -~dg~i~iwd~~~~ 416 (501)
.+.+|.++|+.+.
T Consensus 296 ~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 296 KLSPTVTVLDVTRF 309 (595)
T ss_dssp TTSSBEEEEEGGGH
T ss_pred CCCCeEEEEECccc
Confidence 5899999999854
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.68 E-value=5.2e-06 Score=76.13 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=92.0
Q ss_pred ceEEEEecC-CCCEEEEE-c-----------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 220 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 220 ~v~~l~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
....+++.+ +|.+.++. . ++.|..+|.. .+...... . .......++++|++
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~-------~-~~~~p~gia~~~dg- 196 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL-------K-ELHVPGGAEVSADS- 196 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE-------E-EESCCCEEEECTTS-
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec-------c-CCccCcceEECCCC-
Confidence 456788888 88777764 2 2678888876 33322110 0 11234679999998
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-----------C
Q 010801 281 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----------M 348 (501)
Q Consensus 281 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-----------~ 348 (501)
+.|+++ +.++.|..|++...... ....+.. ..+ ...+++.++|++.++... +
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~ 260 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP 260 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence 755554 55789999998753211 0011111 012 677899999987666422 4
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|..+|. .++.+..+........ .. ++.+++ .+++++++...++.|..+++...
T Consensus 261 ~v~~~d~--~G~~~~~~~~~~g~~~--------~~---~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 261 KGIKFDE--FGNILEVIPLPPPFAG--------EH---FEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEECT--TSCEEEEEECCTTTTT--------SC---CCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEECC--CCCEEEEEECCCCCcc--------cc---ceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 5666665 3676766654432100 01 145666 46777777667889999988643
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.66 E-value=1.2e-05 Score=81.72 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=105.6
Q ss_pred EEEEecCCCcEEEEEeCCCe-------------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 272 SAEFHPIYCNLLAYSSSRGF-------------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++++|++ .++++++.++. |..+|..+++... .+.... ..... + .....+.-
T Consensus 239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W----~~~~~~--~d~wd-~-~~~~~~~l 309 (689)
T 1yiq_A 239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW----HYQTTP--GDAWD-Y-TATQHMIL 309 (689)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE----EEESST--TCCSC-C-CCCSCEEE
T ss_pred ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE----eeecCC--ccccc-c-cCCCCcEE
Confidence 57889988 88888888764 9999999987542 111100 00000 0 00112222
Q ss_pred EEEeeCCC---EEEEEc-CCcEEEEEeeCCCCceeEeeccccc-c-------------------------ccccccCCCC
Q 010801 333 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL-R-------------------------PKLCDLYNND 382 (501)
Q Consensus 333 ~~~sp~~~---~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~~~ 382 (501)
.....+|+ .++.++ +|.++++|.++ ++++......... . ...++-....
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence 23334665 666665 49999999986 7776443221100 0 0000000000
Q ss_pred CcceeeEEEEcCCCcEEEEEeC---------------------------------------------CCeEEEEecCCCC
Q 010801 383 SIFDKFECSVSGDGLHFATGSY---------------------------------------------SNLLRIFSHGVGS 417 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~ 417 (501)
... ..++++|+..++++... +|.|+.||+.+++
T Consensus 389 ~~w--~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 389 HDW--QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SCS--SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cCC--CcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 000 24789998877776532 3789999999995
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc--ccCCccccc-ccCCCeEEEEEccCCCE-EEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSY-NLSSKLLHLAWHPTTNL-IACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~-~~~~~i~~~~~sp~~~~-la~~~ 492 (501)
.+ ..++.+. +.....+.. .+.+ ++.|+.|+. +.|+ +++.+.... .....-.-+.|..+|++ +++.+
T Consensus 467 ~~-W~~~~~~-~~~~g~~~t--aggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 467 AA-WEVPYVT-IFNGGTLST--AGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EE-EEEEESS-SCCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eE-eEccCCC-CccCccceE--CCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 43 4444443 223333333 3333 666777777 7773 333332222 21111234667888874 55443
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=1.9e-05 Score=69.02 Aligned_cols=207 Identities=7% Similarity=-0.000 Sum_probs=124.1
Q ss_pred ceEEEEEccCCCEEEEEec--CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee--ccCCcchhhccc
Q 010801 34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS 109 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~ 109 (501)
....++|++++.+.++.+. ++.|.++|+.+++.. ..+ ..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~~-------- 66 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDSY-------- 66 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTTC--------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCCc--------
Confidence 3578999998754444332 579999999988652 222 1221
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
....+++. ++..+++.-.++.+.++|..+.+........
T Consensus 67 -----fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--------------------------------- 105 (266)
T 2iwa_A 67 -----FGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--------------------------------- 105 (266)
T ss_dssp -----CEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEEEEEECC---------------------------------
T ss_pred -----ceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEEEEEECC---------------------------------
Confidence 12345553 2344444457899999999988765543211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.++ ...+++||+.++++ .++.|.++|..+. +....+.+.. -...-.
T Consensus 106 -------------------------~~~-----g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~--~~~p~~ 152 (266)
T 2iwa_A 106 -------------------------MKD-----GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKY--NGHRVI 152 (266)
T ss_dssp -------------------------SSS-----CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEE--TTEECC
T ss_pred -------------------------CCC-----eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECC--CCcccc
Confidence 011 12245678888888 7889999999843 4444432210 011122
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCC--CcceeeecccceeEEEEeeCCCEEEE-E
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG--SKSFFTEIIASISDIKFANDGQHLLS-R 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~~-~ 345 (501)
.++.+.|. ++ .+++....++.|.+.|..+++.. ..+......+. ... ..-....+.++|+|+++.+.+ +
T Consensus 153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~--~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 153 RLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEG--FRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTT--CTTCCCEEEEEEETTTTEEEEEE
T ss_pred cceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE----EEEECCCccccccccc--ccccCceEEEEEcCCCCEEEEEC
Confidence 46788888 66 77766667899999999998765 33332000000 000 000135689999999876654 4
Q ss_pred cC-CcEEEEEeeC
Q 010801 346 DY-MNLKLWDIRM 357 (501)
Q Consensus 346 ~~-~~i~lwd~~~ 357 (501)
.. +.+.+.++..
T Consensus 225 k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWPKLFEIKLHL 237 (266)
T ss_dssp TTCSEEEEEEEEE
T ss_pred CCCCeEEEEEEec
Confidence 43 8898888874
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.62 E-value=2.2e-05 Score=73.67 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=83.8
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC----CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
..++.+ .++.+..+|..++...... ...... +............. + ..++.++.++.+..+|..+++..
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE--T-TEEEEECTTSCEEEEETTTCCEE--
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcEEEEEECCCCcEE--
Confidence 466667 8899999998855443332 111000 00000000011111 3 56777788999999999988643
Q ss_pred ccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCc
Q 010801 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (501)
+.. . ......+.. ++..+..+ .++.|..+|..+ ++.+...........
T Consensus 263 ----w~~-~------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~----------- 311 (376)
T 3q7m_A 263 ----WKR-E------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLL----------- 311 (376)
T ss_dssp ----EEE-C------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCC-----------
T ss_pred ----eec-c------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcc-----------
Confidence 222 0 012233333 24445544 458999999986 666555442111110
Q ss_pred ceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 385 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
..... .+..|+.++.+|.|+++|..+++.+ .....
T Consensus 312 ---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~-~~~~~ 346 (376)
T 3q7m_A 312 ---TSPVL--YNGNLVVGDSEGYLHWINVEDGRFV-AQQKV 346 (376)
T ss_dssp ---CCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred ---cCCEE--ECCEEEEEeCCCeEEEEECCCCcEE-EEEec
Confidence 12222 2457888999999999999998544 44443
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=3.9e-05 Score=67.01 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=101.8
Q ss_pred cceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....++|++++.++++. . ++.|.++|+.+ ++....+.+ ..+ .....+++. +.++.++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l-----~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKM-----DDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEEC-----CTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEec-----CCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 346789999987555554 3 68999999994 455554432 222 122345555 42555666668999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
|..+.+.. ..+.. . .-....+++||+.++++. .+.|.++|..+ .+.+..+.......+
T Consensus 92 D~~t~~v~----~~i~~-g--------------~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p- 150 (266)
T 2iwa_A 92 DRRTLSNI----KNFTH-Q--------------MKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHR- 150 (266)
T ss_dssp ETTTTEEE----EEEEC-C--------------SSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEE-
T ss_pred ECCCCcEE----EEEEC-C--------------CCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcc-
Confidence 99987654 33332 0 011234667888777664 48999999986 677777664332110
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+...+.+.|. +|+..+....++.|.+.|..+++.
T Consensus 151 ---------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 151 ---------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp ---------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred ---------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence 0001577888 776666666688999999998844
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.58 E-value=9.4e-05 Score=67.07 Aligned_cols=238 Identities=11% Similarity=0.126 Sum_probs=128.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.....++|+++|+++++-..++.|..||..+... ..+. -.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~----------- 71 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE----------- 71 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence 4578899999999777666788998888664311 1111 11
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC-C-eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d-~-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.....+++. ++++++++.... + .|..++..+++.......
T Consensus 72 -~~p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~----------------------------------- 113 (306)
T 2p4o_A 72 -GKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----------------------------------- 113 (306)
T ss_dssp -SEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred -CCceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----------------------------------
Confidence 447888886 778765554432 2 466666666664332210
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec--CCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 267 (501)
........++..+++..+++. .++.|..+|.......+..... ........-
T Consensus 114 -------------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 114 -------------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp -------------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred -------------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 001112233334455444444 5788888887632111110000 000011111
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.....+ +|++..++++-...+.|..+|+.. ++.. ....+.. ......+++.++|++.++..
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECB
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeC
Confidence 234555 788723445555678999999875 3211 1122211 12467889999998766654
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc---CCCcEEEEEeCCC
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN 406 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~s~~~dg 406 (501)
.+.|.++|.. ++............ ..++++|. |+++.|+..+..+
T Consensus 231 ~~~~V~~~~~~--G~~~~~~~~~~~~~-------------~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 IYNSVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTCCEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCeEEEECCC--CCEEEEeecccccC-------------CceEEEEecccCCCCEEEEECCCC
Confidence 3889999863 54422111111100 01689998 8877666655433
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=9.2e-05 Score=63.87 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+.++++..........+.|+ ++.++.+. .+| .|+.+|+.+ ++....+.+ ... ..--.++. ++.++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l-----~~~-~FgeGit~--~g~~ly~ 101 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL-----GKR-YFGEGISD--WKDKIVG 101 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC-----CTT-CCEEEEEE--ETTEEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec-----CCc-cceeEEEE--eCCEEEE
Confidence 34455522223344788898 66555554 555 999999994 444444322 111 11123444 3425555
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCcee
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~ 363 (501)
..-.++.+.+||..+.+.. ..+.. .-....+++|++.|+.++ .+.|.++|..+ .+.+.
T Consensus 102 ltw~~~~v~v~D~~t~~~~----~ti~~----------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~ 160 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQV----RSFNY----------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVR 160 (262)
T ss_dssp EESSSSEEEEEETTTCCEE----EEEEC----------------SSCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEE
T ss_pred EEeeCCEEEEEECccCcEE----EEEEC----------------CCCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEE
Confidence 5556899999999987654 33333 112234457788777664 48899999986 77777
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.......+ +...+.+.|. +|+..+..-.++.|.+.|.++++.
T Consensus 161 ~I~V~~~g~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 161 TITVTAHGEE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred EEEeccCCcc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence 7765432110 0001357776 777666666788999999999843
No 246
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=4.4e-05 Score=77.30 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=61.2
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.|..||+.+++.. +.. . +..++....+..++..++.++ ++.+++||.++ ++.+..+...
T Consensus 457 g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAA------WSV-E-----------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cEEEEEeCCCCcEE------eec-C-----------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence 77999999988643 222 0 123345555677787877775 59999999997 8988888755
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eC----------------CCeEEEEecC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SY----------------SNLLRIFSHG 414 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~----------------dg~i~iwd~~ 414 (501)
..... .-+.+..+|+.+++. +. .+.+..|.+.
T Consensus 518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 43321 357777888755432 22 3677777776
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=0.00027 Score=63.96 Aligned_cols=161 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred ceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
....+++.++|+++++. ... .|..+|.. .+........ . .......++..+.+ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 57789999999976665 332 46666766 3333332211 1 11223455555554 5555544688999999
Q ss_pred ccCCcccccccceeecccccC-CCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc--eeEeeccccc
Q 010801 297 MRQSALCDHSARILRDAAESH-GSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHL 371 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~ 371 (501)
...++... ..... .... ... +.-...+.+ +|++++|..++ .+.|..|++...++. ...+.....+
T Consensus 145 ~~~~~~~v---~~~~~-~~~~~~~~----~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P 214 (306)
T 2p4o_A 145 VVQPSGSI---WLEHP-MLARSNSE----SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI 214 (306)
T ss_dssp TTTTEEEE---EEECG-GGSCSSTT----CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC
T ss_pred CCCCcEeE---EEECC-cccccccc----CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC
Confidence 76542110 00000 0000 000 000123444 88888777664 389999998632221 1112111111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
..++++++|+++++....+.|.+++..
T Consensus 215 ----------------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 215 ----------------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ----------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 479999999988877778899999865
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.50 E-value=3.3e-06 Score=77.62 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=113.7
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
.+.++...+++. +..+ .+ |..+|.. +..... ............+. + ..+.+++.++.|..+|..
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~~-g~~~~~--------~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINPD-GTEKWR--------FDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD 125 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECCC-GGGGGG--------SCC-----CCEEEE-T--TEEEEECTTSEEEEECTT
T ss_pred cccceEEecCCc-EEEecCc--EEEECCC-CcEEEE--------EECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC
Confidence 345566666664 4445 44 8888753 332221 11111112223333 3 457778889999999987
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (501)
++.. ..... ....+.++...+++.+++...++.|..+|.. ++.+..+......+
T Consensus 126 -g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~------ 179 (330)
T 3hxj_A 126 -GTEK----WRFKT-------------KKAIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAIT------ 179 (330)
T ss_dssp -SCEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCC------
T ss_pred -CCEE----EEEcC-------------CCceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCce------
Confidence 5432 11111 1234566677778876665555899999975 55555554332222
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA- 457 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~- 457 (501)
.++...+++.+++.. +.|..+| .+++. ..........+.++...+ ++. +..+..++.
T Consensus 180 ---------~~~~~d~~g~l~v~t---~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~~gl 237 (330)
T 3hxj_A 180 ---------SAASIGKDGTIYFGS---DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISE--DGT------IYVTSLDGHL 237 (330)
T ss_dssp ---------SCCEECTTCCEEEES---SSEEEEC-TTSCE-EEEECCSSCCCSCCEECT--TSC------EEEEETTTEE
T ss_pred ---------eeeEEcCCCEEEEEe---CEEEEEC-CCCcE-EEEEccCCcceeceEECC--CCe------EEEEcCCCeE
Confidence 467777788755544 7889999 66533 344444445566666654 333 334444333
Q ss_pred eeccccCCcc-cccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 458 HENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 458 ~iw~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
..++...... ........+..+...+++.+.+...+++++.|+
T Consensus 238 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 238 YAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred EEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence 3333221111 111111222334555566554444455788775
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.49 E-value=0.00046 Score=64.71 Aligned_cols=172 Identities=10% Similarity=0.008 Sum_probs=98.6
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEEc
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd~ 297 (501)
...+++.+.+..|+.+ ..+.|.+.+++ +.....+ +.........++++|.+..++.+-... +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 3567887755555544 67788888887 3322221 122224568999999772444444444 78888887
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
...... .+... .-.....++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 233 dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P-- 291 (386)
T 3v65_B 233 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP-- 291 (386)
T ss_dssp TSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSSE--
T ss_pred CCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCCc--
Confidence 653221 11111 013468999998877777664 3 788888875 333333321111110
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
..+++ ..+.++++-...+.|..++..+++.. ..+.........+++
T Consensus 292 ------------~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 292 ------------FAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp ------------EEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred ------------eEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 46777 34566667777889999986666444 444433333334444
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=4e-05 Score=77.56 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=100.9
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~ 280 (501)
.+++.|+..+++.+ .++ .|..+|.++++...+. ...+...-. ...+.....+..+|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-~~~~~~~wd~~~~~~~~~~d~~~~G- 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-QVTPGDSWDFTATQQITLAELNIDG- 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-ecCCCccccccCCCCcEEEEeccCC-
Confidence 46777777777776 554 4888998855544432 111100000 11223333334466
Q ss_pred c---EEEEEeCCCeEEEEEccCCcccccccc---eeeccc----ccC--------CCcc--eeeecc--cceeEEEEeeC
Q 010801 281 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAA----ESH--------GSKS--FFTEII--ASISDIKFAND 338 (501)
Q Consensus 281 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~----~~~--------~~~~--~~~~h~--~~i~~~~~sp~ 338 (501)
+ .++.++.+|.+.++|..+++.+..... .+...- ..+ .... ...+.. ..-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 4 688899999999999999976521000 000000 000 0000 000000 00123677777
Q ss_pred CCEEEEE------------------------------------cC-CcEEEEEeeCCCCceeEeeccccccccccccCCC
Q 010801 339 GQHLLSR------------------------------------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 381 (501)
Q Consensus 339 ~~~l~~~------------------------------------~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (501)
...+... .. +.|+.||+.+ ++.+-+.......
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~---------- 460 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW---------- 460 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC----------
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC----------
Confidence 6655431 12 6788899886 7766655543321
Q ss_pred CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
....+...+.+++.++.||.++.||.++++.+ ..++..
T Consensus 461 ------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l-~~~~~~ 498 (668)
T 1kv9_A 461 ------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL-WQFEAQ 498 (668)
T ss_dssp ------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECS
T ss_pred ------cCceeEeCCCEEEEECCcccchhhhhhcChhh-eEecCC
Confidence 22344446778899999999999999999554 455443
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.49 E-value=0.00076 Score=62.22 Aligned_cols=173 Identities=10% Similarity=0.013 Sum_probs=99.8
Q ss_pred ceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEE
Q 010801 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd 296 (501)
....+++.+.+..|.. - ..+.|.+.+++ +...... +...-.....++++|.+..++.+-... +.|..++
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 3457888875555544 4 67899999988 3322221 112224568999999762555554445 7888888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
+...... ..... .-.....++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 189 ~dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P- 248 (349)
T 3v64_C 189 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP- 248 (349)
T ss_dssp TTSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSSE-
T ss_pred CCCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCCc-
Confidence 7653221 11111 013568999999887777664 2 788888875 333333221111100
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
..+++. ++.++++-...+.|..++..+++.. ..+.........+++
T Consensus 249 -------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 249 -------------FAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 294 (349)
T ss_dssp -------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred -------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCcc-EEeccCCCCCceEEE
Confidence 467773 5566666667888988886666444 344333333334443
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=5.1e-05 Score=65.47 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=102.6
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 286 (501)
+.++++...-......+.|+. +.++.+. .+|.|+.+|+.+ ++....+ +.+ ...--.+++ ++.++++..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T-gkv~~~~-l~~------~~FgeGit~--~g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLES-AQPVWME-RLG------NIFAEGLAS--DGERLYQLT 112 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSC-SSCSEEE-ECT------TCCEEEEEE--CSSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCC-CcEEeEE-CCC------CcceeEEEE--eCCEEEEEE
Confidence 344555223334456888873 4455555 888999999994 4444432 221 111123444 443566666
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
-.++.+.+||..+.+.. ..+.. ... ...+++|++.|+.++ .+.|+++|..+ .+.+.++
T Consensus 113 w~~~~v~V~D~~Tl~~~----~ti~~--------------~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I 171 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRE----RTTRY--------------SGE--GWGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAV 171 (268)
T ss_dssp SSSCEEEEEETTTTEEE----EEEEC--------------SSC--CCCEEEETTEEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred ccCCEEEEEECCcCcEE----EEEeC--------------CCc--eeEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEE
Confidence 67899999999988655 33333 111 223346788777664 48999999986 7777777
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
.......+ +...+.+.|. +|+..+..-.++.|.+.|.++++.
T Consensus 172 ~V~~~g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 172 QVKLRGQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp ECEETTEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred EeCCCCcc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence 65433211 0011467777 777666665688999999999843
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=6.1e-05 Score=64.98 Aligned_cols=196 Identities=10% Similarity=0.051 Sum_probs=113.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.-...+.|+ ++.++.+.+.+| .|+.+|+.+++........
T Consensus 43 ~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------------------------- 84 (262)
T 3nol_A 43 AFTEGFFYR---NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------------------------- 84 (262)
T ss_dssp CEEEEEEEE---TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------------------------
T ss_pred cccceEEEE---CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------------------------
Confidence 456788885 566677777765 8999999999876644221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.........+++..|.. . .++.+.+||..+ .+.+..+. ..+ .+
T Consensus 85 ---------------------------~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~-----~~~-eG- 129 (262)
T 3nol_A 85 ---------------------------KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFN-----YDG-EG- 129 (262)
T ss_dssp ---------------------------TTCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEE-----CSS-CC-
T ss_pred ---------------------------CccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEE-----CCC-Cc-
Confidence 11111112223445544 4 799999999994 44455432 222 11
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEc-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
..+.+++ ..|+.+..++.|.++|..+.+.. ..+.. ... +. -..++.+.|. +|+..+... .
T Consensus 130 ---~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~----~~I~V-~~~--------g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 130 ---WGLTHND-QYLIMSDGTPVLRFLDPESLTPV----RTITV-TAH--------GEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp ---CCEEECS-SCEEECCSSSEEEEECTTTCSEE----EEEEC-EET--------TEECCCEEEEEEE-TTEEEEEETTS
T ss_pred ---eEEecCC-CEEEEECCCCeEEEEcCCCCeEE----EEEEe-ccC--------CccccccceeEEE-CCEEEEEEccC
Confidence 2333566 55665566788999999887654 22222 000 00 1234567776 776555543 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
+.|.+.|.++ ++.+..+....-.. ........... .+.++|+|+++.|...+.
T Consensus 192 ~~I~vIDp~t-G~V~~~Id~~~L~~-~~~~~~~~~~v--lNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPET-GKVTGIIDLNGILA-EAGPLPSPIDV--LNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTT-CBEEEEEECTTGGG-GSCSCCSSCCC--EEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCC-CcEEEEEECCcCcc-ccccccCcCCc--eEEEEEcCCCCEEEEECC
Confidence 8999999986 88888876532110 00000001111 178999998776665554
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=0.00014 Score=62.09 Aligned_cols=209 Identities=9% Similarity=0.079 Sum_probs=120.0
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCC--CeEEEEeccccceeeeeccCCCccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
.++.+.++ .|.+. +-...+.|+ ++.++.+.+.+ ..|+.+|+.+++........
T Consensus 8 ~~~v~~~~-phd~~----------~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------- 62 (243)
T 3mbr_X 8 GYRVVKRY-PHDTT----------AFTEGLFYL---RGHLYESTGETGRSSVRKVDLETGRILQRAEVP----------- 62 (243)
T ss_dssp CEEEEEEE-ECCTT----------CCEEEEEEE---TTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-----------
T ss_pred ceEEEEEc-CCCCc----------cccccEEEE---CCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-----------
Confidence 45566666 67643 667889996 35666666654 48999999999876654221
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEE
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWN 245 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd 245 (501)
.+ ..-..++. .+..|. .. .++.+.+||
T Consensus 63 ------------------------------------------------~~-~fgeGi~~--~~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 63 ------------------------------------------------PP-YFGAGIVA--WRDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp ------------------------------------------------TT-CCEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred ------------------------------------------------CC-cceeEEEE--eCCEEEEEEeeCCEEEEEE
Confidence 00 00012233 234444 45 899999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
.. ..+.+..+. ..+ .+ ..++ +++ ..|+.+..++.|.++|..+.+.. +.++. ...+..
T Consensus 92 ~~-tl~~~~ti~-----~~~-~G--wglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~~------ 148 (243)
T 3mbr_X 92 LA-TLTPRARFR-----YPG-EG--WALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGRP------ 148 (243)
T ss_dssp TT-TTEEEEEEE-----CSS-CC--CEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTEE------
T ss_pred CC-cCcEEEEEe-----CCC-Cc--eEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCcc------
Confidence 98 455555432 222 11 3443 566 55555567899999999987654 22322 000000
Q ss_pred cccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccc--cCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
-..++.+.+. +|+..+..- .+.|.+.|.++ ++.+..+....-.. .... ....+.. +.++++|+++.|...
T Consensus 149 -~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~-~~~~~~~~~~~vl---NGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 149 -LDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVP-DADALTDSTNDVL---NGIAFDAEHDRLFVT 221 (243)
T ss_dssp -CCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGST-TTTSCCCTTSSCE---EEEEEETTTTEEEEE
T ss_pred -cccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcc-ccccccCCcCCce---EEEEEcCCCCEEEEE
Confidence 0234566655 676555443 48999999987 88888876442110 0000 0011122 799999976655544
Q ss_pred eC
Q 010801 403 SY 404 (501)
Q Consensus 403 ~~ 404 (501)
+.
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 255
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.42 E-value=0.00029 Score=72.42 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=25.6
Q ss_pred ceEEEEEc-cCCCEEEEEec-CC----cEEEEEecCC-c
Q 010801 34 IVSAIEFD-KTGDYLAVGDR-GG----RVILFETVGG-K 65 (501)
Q Consensus 34 ~v~~v~~s-~~g~~latg~~-dg----~i~iw~~~~~-~ 65 (501)
.+...+|| |||++||.+.. +| +|+++|+.++ +
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~ 213 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ 213 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE
Confidence 67889999 99999986543 22 5999999987 5
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=0.00029 Score=60.22 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=101.9
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+.++.+..........+.|++ +.++.+. .+ ..|+.+|+.+ ++....+. +..+. .--.++.. +.+++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~-----l~~~~-fgeGi~~~--~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAE-----VPPPY-FGAGIVAW--RDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEE-----CCTTC-CEEEEEEE--TTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEe-----CCCCc-ceeEEEEe--CCEEEE
Confidence 344555223334566899986 4455554 43 5999999994 45554432 22211 11233443 326666
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCcee
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~ 363 (501)
..-.++.+.+||..+.+.. ..+.. .. ....+.++++.|+.++ .+.|.++|..+ .+.+.
T Consensus 80 ltw~~~~v~v~D~~tl~~~----~ti~~--------------~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~ 138 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPR----ARFRY--------------PG--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVG 138 (243)
T ss_dssp EESSSSEEEEEETTTTEEE----EEEEC--------------SS--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEE
T ss_pred EEeeCCEEEEEECCcCcEE----EEEeC--------------CC--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEE
Confidence 6667999999999987655 33333 11 2233446777666654 48999999986 77777
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.......+ +..++.+.|. +|+..+..-.+..|.+.|.++++.
T Consensus 139 ~I~V~~~g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 139 SIKVTAGGRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred EEEEccCCcc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 7765432211 0011456665 777666665688999999999843
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.001 Score=68.93 Aligned_cols=248 Identities=11% Similarity=0.037 Sum_probs=130.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeee-------cCCCCCCCcccceEEEEEecCCCcEEEEEeCCC
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 290 (501)
...|.++...++|.+.+....+-|.++|... ........ .......-....|.++...++| .+ -.|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~l-Wigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQ-NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NI-WIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTC-C---------CEEECBCSSTTSBSSSCEEEEEECSSC-CE-EEEEBSS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCC-CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CE-EEEecCC
Confidence 3568888888888655544656788888873 32211100 0000011234678999999887 54 4566677
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccc
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
-|..++...... ..+.. ........ ......|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus 334 Gl~~~~~~~~~~-----~~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~ 403 (781)
T 3v9f_A 334 GINFISNAPPTF-----HTWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE 403 (781)
T ss_dssp CEEEECSSCCSC-----EEEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred eEEEeCCCCCcc-----eeecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence 788888765432 11111 00000000 0012468899888888766554456788888653 2 1222211000
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe---cccCcccceeeccCCccccCccc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRSSLS 447 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 447 (501)
. .... |.++...++|.+.+ |+.++-|..++..+++. ..+. .....|.++...+ ++.+
T Consensus 404 ~--------~~~~---v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~--~g~l---- 463 (781)
T 3v9f_A 404 L--------LSNS---VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDK--NKKI---- 463 (781)
T ss_dssp C--------CCSB---EEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECT--TSEE----
T ss_pred C--------CCcc---eEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECC--CCCE----
Confidence 0 0111 26788888887655 66666788888776522 2221 1223455554443 4443
Q ss_pred eeeeecccceeeccccC-Cccccc------ccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 448 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 448 ~l~~~~~~~~~iw~~~~-~~~~~~------~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+ |...|...++... ...... .....|.++...++|.+.+....++++.|+
T Consensus 464 -wi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 464 -WI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp -EE-EETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred -EE-EECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 22 2233334442221 111111 114678999999999877766567888775
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00085 Score=58.19 Aligned_cols=219 Identities=11% Similarity=0.157 Sum_probs=126.0
Q ss_pred cceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.+..++|. |+++ ++++...++.|...|.. ++.......
T Consensus 27 ~~lSGla~~--~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------------------------------------- 66 (255)
T 3qqz_A 27 NNISSLTWS--AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------------------------------------- 66 (255)
T ss_dssp SCEEEEEEE--TTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------------------------------------
T ss_pred cCcceeEEe--CCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------------------------------------
Confidence 669999998 5544 45556678889888887 554443211
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCCcccc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 269 (501)
.+ ......+++.+++.++++. .++.+.++++..... ......... ........
T Consensus 67 ----------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g 122 (255)
T 3qqz_A 67 ----------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCG 122 (255)
T ss_dssp ----------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSC
T ss_pred ----------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCC
Confidence 11 2346678888888877777 888999999875543 222222110 01233556
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEcC-
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY- 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~~- 347 (501)
.-.++|+|.+ +.|.++.+.....+|.+. +........+... ..-.. ..+...+.+++++|....+. ....
T Consensus 123 ~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~~~~l~i~~~-~~~~~-----~~~~~d~S~l~~dp~tg~lliLS~~s 194 (255)
T 3qqz_A 123 FEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLSSNELHISKD-KALQR-----QFTLDDVSGAEFNQQKNTLLVLSHES 194 (255)
T ss_dssp CEEEEEETTT-TEEEEEEESSSEEEEEEE-STTCSSCCEEEEC-HHHHH-----TCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred cceEEEeCCC-CEEEEEECcCCceEEEEc-ccccCCceeeecc-hhhcc-----ccccCCceeEEEcCCCCeEEEEECCC
Confidence 7899999998 666666665555566554 2111001122111 00000 00124579999999755444 4433
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
..+..+|.. ++.+..+.-....-. + ...+.....++|.++|++.++ ++-+.++.+.-
T Consensus 195 ~~L~~~d~~--g~~~~~~~L~~g~~~----l--~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 195 RALQEVTLV--GEVIGEMSLTKGSRG----L--SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TEEEEECTT--CCEEEEEECSTTGGG----C--SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CeEEEEcCC--CCEEEEEEcCCccCC----c--ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 888888875 666665543321100 0 001111258999999985555 77777776654
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=0.00012 Score=63.09 Aligned_cols=196 Identities=11% Similarity=0.045 Sum_probs=113.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.-...+.|+ ++.++.+.+.+|.|+++|+++++..... ..
T Consensus 55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------------------------------- 93 (268)
T 3nok_A 55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-RL------------------------------------- 93 (268)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-------------------------------------
T ss_pred cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-------------------------------------
Confidence 446788885 4667777788899999999998865432 11
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.. ..-..+++.. +++.+.. .++.+.+||.. ..+.+..+.. .+. + ..
T Consensus 94 ----------------------~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~-----~~e-G--wG 140 (268)
T 3nok_A 94 ----------------------GN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRY-----SGE-G--WG 140 (268)
T ss_dssp ----------------------TT-CCEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEEC-----SSC-C--CC
T ss_pred ----------------------CC-cceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeC-----CCc-e--eE
Confidence 10 0111234432 2344445 89999999999 4555554422 221 1 33
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++ +++ +.|+.+..++.|.++|..+.+.. +.+.. ...+. .-..++.+.|. +|+..+... .+.|.
T Consensus 141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRGQ-------PVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence 43 566 66666667999999999887654 22222 00000 01235667776 776555443 48999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG 402 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~ 402 (501)
+.|.++ ++.+..+....-............... +.++++|+++ ++++|
T Consensus 205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred EEeCCC-CcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence 999986 888887764321000000000011111 7899999755 44555
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00023 Score=67.80 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=90.8
Q ss_pred eEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEc
Q 010801 221 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~ 297 (501)
...++++| ++.++++- .++.|..++.. ......... ... ......++|+|++ + ++++-...+.|..++.
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~~-~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQD-SGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CSS-SSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cCC-CCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence 45678999 67666666 78899999988 333322211 111 2346899999999 7 5555556789999887
Q ss_pred cCCcccccccceeecccccCCCcce---eeecccceeEEEEe--------eCCCEEEEEcC-CcEEEEEeeCCCCceeEe
Q 010801 298 RQSALCDHSARILRDAAESHGSKSF---FTEIIASISDIKFA--------NDGQHLLSRDY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~s--------p~~~~l~~~~~-~~i~lwd~~~~~~~~~~~ 365 (501)
............+.+.........- ......+-..++.. ++|.+.++-.. +.|+.++. .+. +..+
T Consensus 300 d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~--~G~-v~~~ 376 (430)
T 3tc9_A 300 DWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP--QGR-VTTF 376 (430)
T ss_dssp ETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT--TSE-EEEE
T ss_pred CcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC--CCc-EEEE
Confidence 6421000001122220000000000 00011111145553 23544444333 78888873 243 3333
Q ss_pred ecccc-ccccccc--cCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEH-LRPKLCD--LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+... ......+ ............++++| ++.++++-..+..|+.++++
T Consensus 377 ~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 377 AGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 33210 0000000 00000111226899999 57777776677889888765
No 261
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.0006 Score=64.88 Aligned_cols=182 Identities=10% Similarity=0.051 Sum_probs=93.9
Q ss_pred ceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCee-eeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEE
Q 010801 220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~w 295 (501)
....+++.| ++.++++- .++.|+.+|... +.. ..... .. ....-..++|+|++ + ++++-...+.|+.+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~-----~~-~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVM-----MD-TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV 300 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEE-----CS-CCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEec-----cC-CCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence 345678888 66666565 788999999873 333 22211 11 11223579999999 7 45555557899998
Q ss_pred EccC--CcccccccceeecccccCCCcce--eeecccceeEEEE---------eeCCCEEEEEcC-CcEEEEEeeCCCCc
Q 010801 296 DMRQ--SALCDHSARILRDAAESHGSKSF--FTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (501)
Q Consensus 296 d~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~---------sp~~~~l~~~~~-~~i~lwd~~~~~~~ 361 (501)
+... +... ....+.+.........- ....-.....+++ .++|.+.++-.. +.|+.++. .+ .
T Consensus 301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~--~G-~ 375 (433)
T 4hw6_A 301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP--EG-R 375 (433)
T ss_dssp EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT--TS-E
T ss_pred eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC--CC-C
Confidence 8753 2111 01122220000000000 0000123567888 566666555443 78888874 24 3
Q ss_pred eeEeeccccc-cccccc--cCCCCCcceeeEEEEc-CCCcEEEEEeCCCeEEEEecC
Q 010801 362 VATFKIHEHL-RPKLCD--LYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 362 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+.++.+.... .....+ +...........++++ ++|.++++-..+++|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4444332110 000000 0000011122689999 677777777778889888765
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.29 E-value=0.00024 Score=70.33 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=38.9
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+.|..||+.+ ++.+-++...... ....+...+..++.++.||.|+.||.++++.+ ..++.
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l-w~~~~ 503 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL-WNFKM 503 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE-EEEeC
Confidence 6788888876 6666555433221 12222234567777999999999999999655 44543
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0063 Score=62.98 Aligned_cols=239 Identities=9% Similarity=0.019 Sum_probs=128.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCC---CCCCcccceEEEEEecCCCcEEEEEeCCCeEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~ 294 (501)
...|.++...++|.+.+...++-|..++... .. ...+...+. ...-....|.++...++| ++ -.|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAP-PT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KL-WIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSC-CS-CEEEC----CCCSSCCSSSCEEEEEECTTS-CE-EEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCC-Cc-ceeeccCccccccCCCCCcceEEEEEcCCC-CE-EEEeCCCcEEE
Confidence 4578899888888766555777888888773 22 222111000 011123568999988887 54 45666666888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
||..++... .+.. .. ......|.++...++|.+.+...++.|..+|..+ ++ ...+... ..
T Consensus 388 ~~~~~~~~~-----~~~~-~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~-~~--- 447 (781)
T 3v9f_A 388 FENGKRVAI-----YNKE-NR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQIIELE-KN--- 447 (781)
T ss_dssp EETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EEECCST-TT---
T ss_pred EECCCCeEE-----EccC-CC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EEEeccC-CC---
Confidence 997654321 1110 00 0113568888888888776654446788888754 32 3333211 00
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc-----cCcccceeeccCCccccCcccee
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.... +.++...++|++.+ |+. +-|..|+..+++.. ...... ...+.++...+ ++.+
T Consensus 448 -----~~~~---v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~--~g~l------ 508 (781)
T 3v9f_A 448 -----ELLD---VRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDS--EGRF------ 508 (781)
T ss_dssp -----CCCC---EEEEEECTTSEEEE-EET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECT--TCCE------
T ss_pred -----CCCe---EEEEEECCCCCEEE-EEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcC--CCCE------
Confidence 0011 26788888887655 444 45888998766432 111111 23444444433 4443
Q ss_pred eeecc-cceeeccccCC-cccc---cc-cCCCeEEEEEccCCCEEEEeeCCeE-EEEe
Q 010801 450 TRGLY-RQAHENSSSGH-HELS---YN-LSSKLLHLAWHPTTNLIACANGNSL-FFHY 500 (501)
Q Consensus 450 ~~~~~-~~~~iw~~~~~-~~~~---~~-~~~~i~~~~~sp~~~~la~~~~~~~-~i~~ 500 (501)
-.|.. .|...++.... .... .+ ....|.++...++|.+.+... +++ +.|+
T Consensus 509 Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 509 WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 22222 33333322211 1110 11 235788999888888665544 777 7764
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.21 E-value=0.0008 Score=58.36 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=119.9
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+++-...+..++|+|++..++++...++.|...|.. ++.. +.+.. .+ ......+++.+++.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~----~~i~l-----------~g-~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI----RTIPL-----------DF-VKDLETIEYIGDNQFV 84 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE----EEEEC-----------SS-CSSEEEEEECSTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE----EEEec-----------CC-CCChHHeEEeCCCEEE
Confidence 455556799999999874567778889999999987 5433 22211 00 1357788899999877
Q ss_pred EEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC--CCcc
Q 010801 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG 419 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~ 419 (501)
++.. ++.+.++++...+. +........... ....+ .+...++|+|+++.|.++.......||.++. ....
T Consensus 85 vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~---~~~~N---~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSE-VKILKKIKIPLQ---ESPTN---CGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp EEETTTTEEEEEEECTTCC-EEEEEEEECCCS---SCCCS---SCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred EEECCCCcEEEEEcCCCCe-eeeeeeeccccc---ccccc---CCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 7654 48899999875332 221111110000 00011 1126899999987777666655555555541 1011
Q ss_pred eEEEe-------cccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccccc----------CCCeEEEEE
Q 010801 420 GITVE-------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNL----------SSKLLHLAW 481 (501)
Q Consensus 420 ~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~----------~~~i~~~~~ 481 (501)
...+. .+......+++.|. .+.+ ++.....+. .+.+..+........ -..-..|+|
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~-tg~l-----liLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQ-KNTL-----LVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETT-TTEE-----EEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred eeeecchhhccccccCCceeEEEcCC-CCeE-----EEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE
Confidence 12221 12334677788775 4554 455444444 444444332221111 125578999
Q ss_pred ccCCCEEEEeeCCeEEEEe
Q 010801 482 HPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 482 sp~~~~la~~~~~~~~i~~ 500 (501)
.|+|+..+++-.|-+|+|.
T Consensus 232 d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 232 DASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CTTCCEEEEETTTEEEEEE
T ss_pred CCCCCEEEEcCCceEEEEE
Confidence 9999866665567677775
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=0.00063 Score=68.84 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=46.6
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-----CeE
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----GFV 292 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-----g~i 292 (501)
..++++..++++++.| .+..+.+||..+. .-... ..+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~-----~~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPG-----PDMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEEC-----CCCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCC-ceeEC-----CCCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3356778899999987 5678999998833 22221 01221111 1344566788 8888888 34 568
Q ss_pred EEEEccCCc
Q 010801 293 RLVDMRQSA 301 (501)
Q Consensus 293 ~~wd~~~~~ 301 (501)
.+||..+++
T Consensus 317 e~yd~~t~~ 325 (656)
T 1k3i_A 317 EVYSPSSKT 325 (656)
T ss_dssp EEEETTTTE
T ss_pred eEeCCCCCc
Confidence 999998753
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.16 E-value=0.00063 Score=62.05 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=95.4
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC-------------CCCcccceEEEEEec-CCCcEE
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-------------MDDLTEVITSAEFHP-IYCNLL 283 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~~p-~~~~~l 283 (501)
....++++.++++++.++ .++.|..|+.. .+... .+...... .......+..+++.+ ++ + |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGP-NSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCT-TTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCC-CCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-c-E
Confidence 345678899999877888 88999999887 33222 11110000 001123578999998 55 5 4
Q ss_pred EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcC---------------
Q 010801 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY--------------- 347 (501)
Q Consensus 284 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~--------------- 347 (501)
+++...+.|..+|..++.. +.+.. ... . ........+++.+ +|++.++...
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-----~~~~~-~~~-~------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-----TQLAT-SVD-G------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-----EEEES-EET-T------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred EEEECCCCEEEEeCCCCEE-----EEecc-cCC-C------CcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 4455555688888765432 11211 000 0 0013467899999 9987776421
Q ss_pred ---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCC
Q 010801 348 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV 415 (501)
Q Consensus 348 ---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 415 (501)
+.|..||..+ ++..........+ ..++++|++++|..+ +..+.|.+|++..
T Consensus 162 ~~~g~v~~~d~~~-~~~~~~~~~~~~p----------------~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 162 DKTGRLIKYDPST-KETTLLLKELHVP----------------GGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CCCEEEEEEETTT-TEEEEEEEEESCC----------------CEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCceEEEEeCCC-CEEEEeccCCccC----------------cceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 4577777643 3322222211111 579999999865544 5678999999875
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00027 Score=72.69 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=71.2
Q ss_pred ceEEEEec-CCCCEEEEE--cCC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---
Q 010801 220 NINSISNN-SDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--- 289 (501)
Q Consensus 220 ~v~~l~~~-~~~~~l~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--- 289 (501)
.+...+|| |||++|+.+ .+| .|+++|+.++.+.+.. .+ ......++|+||| +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------~~---~~~~~~~~WspDg-~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------KV---SGTNGEIVWGPDH-TSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------CE---EEECSCCEECSST-TEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------cc---cCceeeEEEecCC-CEEEEEEECCCC
Confidence 67788999 999998865 232 5999999854032110 01 1123468899999 767666654
Q ss_pred --CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeC
Q 010801 290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM 357 (501)
Q Consensus 290 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~ 357 (501)
..|.++++.++.... ..++.. ........+.|+|||++|+... ...|+++|+..
T Consensus 245 ~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 257777876653211 122222 0113456789999999988542 25788888864
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.10 E-value=0.0015 Score=65.97 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred EEEEecCCCcEEEEEeCCC-------------------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 272 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++++|+. .+++.++.++ .|..+|.++++... .+.. .+.....+ ....+...
T Consensus 234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W----~~~~---~~~~~wd~-~~~~~~~~ 304 (668)
T 1kv9_A 234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW----HYQV---TPGDSWDF-TATQQITL 304 (668)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE----EEES---STTCCSCC-CCCSCEEE
T ss_pred ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee----Eeec---CCCccccc-cCCCCcEE
Confidence 46888887 7888887776 39999999987542 1111 00000000 00122222
Q ss_pred EEEeeCCC---EEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 333 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 333 ~~~sp~~~---~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
..+..+|+ .++.++ +|.++++|..+ ++++...
T Consensus 305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~ 340 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE 340 (668)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence 33334675 566665 59999999986 7776444
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00036 Score=70.60 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=48.2
Q ss_pred EEEEcc-CCCEEEEEecCC-----------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcc
Q 010801 37 AIEFDK-TGDYLAVGDRGG-----------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPE 103 (501)
Q Consensus 37 ~v~~s~-~g~~latg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~ 103 (501)
++++.+ +|++++.|+.+. .+.+||..+++-. .+..+ ..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-------------------------~~~~~~~~~~-- 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-------------------------DRTVTVTKHD-- 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-------------------------CCEEEECSCC--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-------------------------eCcccCCCCC--
Confidence 556667 888888887543 5788888876532 11111 1121
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceee
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK 151 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~ 151 (501)
.....+++. .++.+++.|+ .+..+.+||..+++...
T Consensus 243 ----------~~~~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 243 ----------MFCPGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIP 279 (656)
T ss_dssp ----------CSSCEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred ----------CccccccCC--CCCCEEEeCCCCCCceEEecCcCCceeE
Confidence 223345654 6888999988 45689999998876544
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.09 E-value=0.0013 Score=65.14 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.+.+++.++.||.++.||.++++.+ ..++.
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~l-W~~~l 512 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLL-WKFKI 512 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCCEE-EEeeC
Confidence 4667778999999999999999655 44443
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.06 E-value=0.0035 Score=58.65 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=69.7
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|..++++ +.....+ ....-.....|+++|++.+++++-+..+.|..+
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEE-------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 456788999877666655 44 788888887 3322222 112233568999998763455555557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... .+... .......+++ ..+.++++-. .+.|..++..+ ++.+..+.
T Consensus 274 d~dG~~~~----~~~~~-------------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSHRK----AVISQ-------------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT-GKNQEIIR 326 (386)
T ss_dssp CTTSCSCE----EEECS-------------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred eCCCCeeE----EEEEC-------------CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence 98653211 12211 0124567777 3344444443 37788887543 55555554
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.03 E-value=0.0013 Score=65.04 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=39.3
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.|.-||+.+ ++.+-+....... ..-.....+.+++.|+.||.++.||.++++.+ ..++..
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~~ 526 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQTG 526 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECS
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecCC
Confidence 6788888876 6666555432211 11111224567888999999999999999655 555443
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0086 Score=55.12 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=68.3
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|...+++ +.....+ ....-.....++++|++..++++-...+.|..+
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEES-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEE-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 446789999866666554 44 788888887 3322211 122234568999998773444554557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... ..... .-.....+++ .++.+.++-. .+.|..++..+ ++....+.
T Consensus 231 ~~dG~~~~----~~~~~-------------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 283 (349)
T 3v64_C 231 NLDGSHRK----AVISQ-------------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT-GKNQEIIR 283 (349)
T ss_dssp ETTSCSCE----EEECS-------------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred eCCCCceE----EEEeC-------------CCCCceEEEE-ECCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence 98653211 11211 0124566777 3343333433 37777777443 55444443
No 274
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.02 E-value=0.026 Score=60.49 Aligned_cols=121 Identities=8% Similarity=0.089 Sum_probs=66.3
Q ss_pred cEEEEEe----------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcE
Q 010801 281 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 281 ~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
.+|++|+ ..|.|.+|++..+++. .... ....+++++++-- +| +|++|-..+|
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-----lv~~-----------~~v~g~v~al~~~-~g-~Lla~ig~~l 906 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-----TVAE-----------KEVKGAVYSMVEF-NG-KLLASINSTV 906 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-----EEEE-----------EEESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-----EEEE-----------EEcCCcCEEEeee-CC-EEEEEcCCEE
Confidence 6888886 3588999998744322 1111 1124577777644 35 5666656899
Q ss_pred EEEEeeCCCCcee-EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc--c
Q 010801 351 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K 427 (501)
Q Consensus 351 ~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~ 427 (501)
++|++.. .+.+. ....... + ..+.....+.+++.|..-..|.+...+........+..+ .
T Consensus 907 ~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 907 RLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp EEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred EEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence 9999975 44343 1111111 1 122332356788889887777776554332333334333 3
Q ss_pred Ccccceeec
Q 010801 428 NENRKPILQ 436 (501)
Q Consensus 428 ~~v~~~~~~ 436 (501)
.+++++.+-
T Consensus 970 ~~vta~~~l 978 (1158)
T 3ei3_A 970 NWMSAVEIL 978 (1158)
T ss_dssp BCEEEEEEE
T ss_pred ccEEEEEEE
Confidence 344455554
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.01 E-value=0.008 Score=54.46 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=94.8
Q ss_pred ceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEE
Q 010801 220 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd 296 (501)
....+++.+.+..|. +- ..+.|.+.+++ +.....++ .........++++|.++.++++.... +.|...+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 346788886555554 44 78899999988 33322221 11223568999999762444443333 6888888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecc-ccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH-EHLRP 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~-~~~~~ 373 (501)
+..... +.+.. ..-.....++++|++..|..++ . +.|..+|+. +.....+... ....
T Consensus 150 ~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~- 209 (316)
T 1ijq_A 150 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 209 (316)
T ss_dssp TTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred CCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC-
Confidence 754321 11111 0013578999999888777664 3 789999985 3333333221 1100
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. ...+++. .+.++++-...+.|..++..+++..
T Consensus 210 ---------~---P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 210 ---------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp ---------S---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred ---------C---cEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 0 0467775 4566667777889999998777544
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.99 E-value=0.0091 Score=54.42 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=81.7
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.+..+.+.+++..++++.++.|. .....+.....+ .......+..+.+.|++ .+++++...+..+-.|- .
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~--~S~DgG~tW~~~------~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-g 192 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIY--RTKDSGKNWQAL------VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-G 192 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEE--EESSTTSSEEEE------ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-T
T ss_pred CeEEEEEECCCCEEEEeCCccEE--EEcCCCCCCEEe------ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-C
Confidence 45667766677666666555443 222233333322 12334568899999987 77766544333333332 1
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
+. .+.... ......+..+.+.+++++++++.+|.+++.+.. .++....+......
T Consensus 193 G~-------tW~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~~~~~-------- 247 (327)
T 2xbg_A 193 QT-------AWEPHN---------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLSPLRR-------- 247 (327)
T ss_dssp CS-------SCEEEE---------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBCTTSS--------
T ss_pred CC-------ceeECC---------CCCCCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccCCccc--------
Confidence 11 111100 011346788999999988887777877776421 12222222111000
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
... .+..+.+.+++.+++++. +|.| ++..+.+
T Consensus 248 ~~~---~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 248 NSV---GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp CCS---CEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CCc---ceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 000 125788988887776654 5665 3444444
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.90 E-value=0.016 Score=54.40 Aligned_cols=159 Identities=9% Similarity=0.022 Sum_probs=95.3
Q ss_pred cceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-C-CCeEEE
Q 010801 219 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~-dg~i~~ 294 (501)
.....+++.+.+..|+. - ..+.|.+.+++ +.....++ .........++++|.+ ..|+... . .+.|..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 229 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTT-TEEEEEECSSSCCEEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEeccc-CeEEEEeCCCCCEEEE
Confidence 45677888875555544 4 67899999988 33322221 1122346899999976 4454444 2 477888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecc-ccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIH-EHL 371 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~-~~~ 371 (501)
.++...... .+... .-.....++++|++..|..++ .+.|..+|+. +.....+... ...
T Consensus 230 ~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l 290 (400)
T 3p5b_L 230 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 290 (400)
T ss_dssp EETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTT
T ss_pred EeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCC
Confidence 887654221 11111 013578999999888877764 2788888875 4433333221 111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. . ..++++. .+.++.+-...+.|..++..+++..
T Consensus 291 ~----------~---P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 291 A----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp S----------S---EEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred C----------C---CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 0 0 0467763 3456666677788999997777554
No 278
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.015 Score=55.61 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=69.4
Q ss_pred cceEEEEe-------cCCCCEEEEE-cCC-------eEEEEECCCCCeee-----eeeecCCCCCCCcccceEEEEEecC
Q 010801 219 FNINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 219 ~~v~~l~~-------~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
.....++| ++++..|+++ ..+ .|.+++....+... ..+ ... .....++++|+
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~~p~giavdp~ 257 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-KQCNGATIHPI 257 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-SCCCCEEECTT
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-CCceEEEEcCC
Confidence 45788999 9999966665 332 26666644212221 111 111 23357788996
Q ss_pred CCcEEEEEeCCCeEEEEEcc-------CCccccc--------ccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 279 YCNLLAYSSSRGFVRLVDMR-------QSALCDH--------SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 279 ~~~~l~~~~~dg~i~~wd~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+..++++-..++.|..+|+. ++..... ...++.. +.......++|+|+|++|.
T Consensus 258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~G~~lY 325 (496)
T 3kya_A 258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQIFIHPTGKYAY 325 (496)
T ss_dssp TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEEEECTTSSEEE
T ss_pred CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEEEEcCCCCEEE
Confidence 53666677778899999997 4432000 0011111 0123467899999999666
Q ss_pred EEc--CCcEEEEEee
Q 010801 344 SRD--YMNLKLWDIR 356 (501)
Q Consensus 344 ~~~--~~~i~lwd~~ 356 (501)
.++ ...|+.++..
T Consensus 326 vaD~~~h~I~kid~d 340 (496)
T 3kya_A 326 FGVINNHYFMRSDYD 340 (496)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEeCCCCEEEEEecC
Confidence 553 3888887775
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=0.016 Score=55.32 Aligned_cols=185 Identities=8% Similarity=-0.001 Sum_probs=93.2
Q ss_pred EEEEecCCCCE-EEEE-cCCeEEEEECC-------CCCe------e----e-eeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 222 NSISNNSDCET-FVSA-DDLRINLWNLE-------ISDQ------C----F-NIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 222 ~~l~~~~~~~~-l~~~-~d~~i~iwd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
..++++|++.. +++- .++.|..+|+. .... . . .++ ... .....+.++|+|+| +
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~~-~~~~p~~ia~~p~G-~ 322 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TIA-DPSWEFQIFIHPTG-K 322 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----ECS-SSSCCEEEEECTTS-S
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-----ecC-CCCCceEEEEcCCC-C
Confidence 45788995444 4555 88899999987 2221 0 1 111 011 22345899999999 7
Q ss_pred E-EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc-e-eeeccccee-EEEEe-------eCCCEEEEEcC-Cc
Q 010801 282 L-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-F-FTEIIASIS-DIKFA-------NDGQHLLSRDY-MN 349 (501)
Q Consensus 282 ~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~h~~~i~-~~~~s-------p~~~~l~~~~~-~~ 349 (501)
. +++-+....|+.+|............++.+......... . ....=.... .++.. ++|.+.++-.. ..
T Consensus 323 ~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r 402 (496)
T 3kya_A 323 YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC 402 (496)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE
T ss_pred EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE
Confidence 5 444456788999765432100000012222000000000 0 000001223 44444 44555444333 88
Q ss_pred EEEEEeeCCCCceeEeecccccc---c----cccc--cCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLR---P----KLCD--LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.++. .+ .+.++.+..... + ...+ +...-.......++++++ |.++++=..+.+|+.++++..
T Consensus 403 Ir~i~~--~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 403 VRKVTP--EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEECT--TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEEeC--CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 998883 24 455665432100 0 0000 000111112368999996 877777777899999998765
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.81 E-value=0.042 Score=56.22 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=95.2
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-CeEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~~ 294 (501)
.....|++.+.++.|+.+ ..+.|.+.+++ +.....++ .........|+++|.+ ..|+.+. .. +.|..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 541 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeEEE
Confidence 345678888777666655 78899999998 43322221 1222347899999986 4455444 33 77888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee-ccccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK-IHEHL 371 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~-~~~~~ 371 (501)
.++...... .+... .-.....|++.+.+..|..++. +.|..+++. +.....+. .....
T Consensus 542 ~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l 602 (791)
T 3m0c_C 542 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 602 (791)
T ss_dssp EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT
T ss_pred EecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCcc
Confidence 888654321 11111 0135789999988777776642 778888875 44444432 21111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. ...+|++.. +.++++-...+.|...+..+++.+
T Consensus 603 ~-------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 603 A-------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp S-------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred C-------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 1 004566643 345555566788888887777554
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.79 E-value=0.019 Score=51.89 Aligned_cols=122 Identities=7% Similarity=0.003 Sum_probs=68.0
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|...+++ +.....+ ....-.....++++|++.+++++-+..+.|..+
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~ 191 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE-------EECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence 356788999866655554 33 788888887 3322211 111224568999998872444444557899999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~ 365 (501)
|+..... +.+.... +.-.....+++. .+.++++-.. +.|..++..+ ++.+..+
T Consensus 192 d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i 245 (316)
T 1ijq_A 192 DVNGGNR-----KTILEDE----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLL 245 (316)
T ss_dssp ETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEE
T ss_pred ecCCCce-----EEEeecC----------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEE
Confidence 9875321 2221100 001234566774 3434444333 7888888654 5544444
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.0067 Score=57.61 Aligned_cols=155 Identities=7% Similarity=0.006 Sum_probs=89.9
Q ss_pred cceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CC----e
Q 010801 219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----F 291 (501)
Q Consensus 219 ~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg----~ 291 (501)
.....++++| ++..|..+ ..+.|+.+|+. .+....+. ........++|++++ +.|+++.. ++ .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccce
Confidence 3456789998 45556665 44889999988 44433321 133457899999999 75555554 22 2
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+..++. .+..... ..+.. -.....++++| +|.++++-. .+.|+.++... +..........
T Consensus 207 v~~~~~-~g~~~~~--~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~ 268 (430)
T 3tc9_A 207 NYILTR-ESGFKVI--TELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQD 268 (430)
T ss_dssp EEEEEG-GGTSCSE--EEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSS
T ss_pred EEEEeC-CCceeee--eeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCC
Confidence 333333 3221100 11111 13467888999 666555543 38899998763 32212221111
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcE-EEEEeCCCeEEEEecCC
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGV 415 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~i~iwd~~~ 415 (501)
...+ ..++|+|+|++ +++-...+.|..++.+.
T Consensus 269 ~~~P--------------~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 269 SGWE--------------FHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCC--------------EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCcc--------------eeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 1111 68999999994 45555678999988763
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.74 E-value=0.015 Score=52.51 Aligned_cols=160 Identities=8% Similarity=0.071 Sum_probs=87.7
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCc-EEEEEeCCCeEEEEEccC---Ccccccccceee
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILR 311 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~ 311 (501)
+++|.+|++......+..+.-....+..-...+..+++ +|.... ++++...+|.+..|++.. +....+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222233220000000011145677787 675423 677778899999999843 323333334555
Q ss_pred cccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCC----CCceeEeeccccccccccccCCCCCcce
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
. ...+..|...+....|..+.. ..|..++.+.. .+.+..+. .... ..+
T Consensus 178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l------------~aD 230 (355)
T 3amr_A 178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHL------------TRD 230 (355)
T ss_dssp C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSB------------CSC
T ss_pred C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCcc------------ccC
Confidence 4 356889999988888888754 33555554321 12332221 1111 112
Q ss_pred eeEEEE--cCCCc-EEEEEe-CCCeEEEEecCCCCcceEEEe
Q 010801 387 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 387 ~~~~~~--s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+++ .++++ +|++.+ .+++..+||.+........+.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 256766 45555 666666 578999999973323444443
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.73 E-value=0.019 Score=54.43 Aligned_cols=170 Identities=9% Similarity=-0.032 Sum_probs=89.6
Q ss_pred cceEEEEecCCCCEEEEEcCC-----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec-CCCcEEEEEeCCCeE
Q 010801 219 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFV 292 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i 292 (501)
.....++++++|+++++...+ .+...+.......... +. .-.....++++| ++ .++++-..++.|
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~V 252 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAMI 252 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSEE
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCEE
Confidence 457789999999955544321 2333332211110011 11 123346788999 55 666666667899
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc---eeEeec
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP---VATFKI 367 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~---~~~~~~ 367 (501)
+.+|..++.... ..+.. .. ...-..++|+|+|++|..++ .+.|+.++....... ...+.+
T Consensus 253 ~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 253 SSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp EEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred EEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 999987664311 11211 00 11234699999999666553 378988887521121 122222
Q ss_pred ccccccccccc-CCCCCcceeeEEEE---------cCCCcEEEEEeCCCeEEEEec
Q 010801 368 HEHLRPKLCDL-YNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 368 ~~~~~~~~~~~-~~~~~~~~~~~~~~---------s~~~~~l~s~~~dg~i~iwd~ 413 (501)
..... ...+. ...........+++ .++|.++++-...+.|+.++.
T Consensus 318 ~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 318 QHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred cCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 20000 00000 00000111257899 778888877777888998874
No 285
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.68 E-value=0.053 Score=53.56 Aligned_cols=27 Identities=4% Similarity=0.037 Sum_probs=21.8
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeee
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
+..++.++.|+.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 457788888999999999999866543
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.62 E-value=0.036 Score=50.09 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=93.9
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~w 295 (501)
....+++.+.+..|+.+ ..+.|.+++++ +.....+ ..........++++|.+ ..|+.+. ..+.|...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence 34568888755555444 67899999988 3322221 11223456899999976 4455444 25788888
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
++...... ..... .-...+.++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 151 ~~dG~~~~----~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P 211 (318)
T 3sov_A 151 GMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHP 211 (318)
T ss_dssp ETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSCE
T ss_pred EcCCCCeE----EEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCCc
Confidence 87643211 11111 013468999999887777664 3 888888875 333333321111110
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+++.. +.++.+-...+.|..++..+++..
T Consensus 212 --------------~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 212 --------------FALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred --------------eEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 4677753 455666667789999998777544
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.58 E-value=0.041 Score=49.74 Aligned_cols=121 Identities=5% Similarity=-0.041 Sum_probs=68.4
Q ss_pred cceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ . .+.|...+++ +.....+ ....-.....++++|++.+++++-+..+.|..+
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFII-------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEE-------EECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 345788898866666555 2 5788888877 3322221 111223468999999762444554557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... .+... .-.....+++.. +.++.+-. .+.|..++..+ ++....+.
T Consensus 194 d~dG~~~~----~~~~~-------------~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 194 NLDGTNRQ----AVVKG-------------SLPHPFALTLFE-DILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp ETTSCSCE----EEECS-------------CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred cCCCCceE----EEecC-------------CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 98653221 11111 012345666642 33333433 37888888764 55544443
No 288
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.57 E-value=0.046 Score=49.95 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=93.3
Q ss_pred ceEEEEecCCCCEEEEE-------------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec--CCCcEEE
Q 010801 220 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA 284 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~ 284 (501)
....+...|+|..++++ .+|.|.++|.+........+.+....+.........+.+.+ ++...|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677877666654 58899999987332222222111100222334667788766 3412344
Q ss_pred EE-eC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C----------
Q 010801 285 YS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y---------- 347 (501)
Q Consensus 285 ~~-~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~---------- 347 (501)
++ .. +..|.+|++............+... .-...+.+.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 43 33 5678888876543222112222220 024678999999999888753 1
Q ss_pred --CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCC
Q 010801 348 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV 415 (501)
Q Consensus 348 --~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 415 (501)
..-+||.+.. ++......+-..+ +.++|+||++.|..+ +..+.|..|+++.
T Consensus 199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1234555543 3322222222222 689999999877655 4578999999874
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.56 E-value=0.054 Score=50.78 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=68.5
Q ss_pred cceEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~ 294 (501)
.....|++.|.+..|+.+ . .+.|...+++ +.....+ ....-.....|++++++ ..|+.+ ...+.|..
T Consensus 202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 272 (400)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCC-CEEEEEECCCCEEEE
Confidence 346789999866666554 2 4788888887 3322222 11222456899999887 555554 45788999
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEee
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 366 (501)
+|+...... .+... . +.-....++++. .+.++.+-.. +.|..+|..+ ++.+..+.
T Consensus 273 ~d~dG~~~~----~~~~~-~----------~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 273 IDVNGGNRK----TILED-E----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp EETTSCCCE----EEEEC-S----------STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred EeCCCCccE----EEEeC-C----------CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 998654321 12111 0 001233456653 2333334333 7888888654 55555544
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.55 E-value=0.079 Score=54.24 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=47.5
Q ss_pred cceEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~ 294 (501)
.....|++.|.+..|+.+ . .+.|...+++ +.....+ +...-.....|++++.+ ..|+.+ ...+.|..
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 584 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCC-CeEEEEeCCCCcEEE
Confidence 346789999876666554 3 3788888887 3333222 12223467899999877 555554 45678999
Q ss_pred EEccCC
Q 010801 295 VDMRQS 300 (501)
Q Consensus 295 wd~~~~ 300 (501)
.|+...
T Consensus 585 ~d~dG~ 590 (791)
T 3m0c_C 585 IDVNGG 590 (791)
T ss_dssp EETTSC
T ss_pred EecCCC
Confidence 998654
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.55 E-value=0.033 Score=49.80 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=77.2
Q ss_pred ceEEEEe---cCCCCEEEEEc--------------CCeEEEEECC---CCCeeeeeeecCCCCCCC-------cccceEE
Q 010801 220 NINSISN---NSDCETFVSAD--------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD-------LTEVITS 272 (501)
Q Consensus 220 ~v~~l~~---~~~~~~l~~~~--------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~ 272 (501)
.+..|.| .|+++++++.+ +..|..+|+. +.+.... .++... ..+ -......
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~-~~~~~~~~g~~~~~~nD 141 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEKV-QDEFEKKAGKRPFGVVQ 141 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHHH-HHHHHHHHSSCCEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCccc-cccccccccccccCCce
Confidence 3467888 57877776542 5779999988 4443322 221100 000 1134789
Q ss_pred EEEecCCCcEEEEEeCC-CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 273 AEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
++..++| +..++++.. +.|...+...... ..+.. .... .......+.|+++|+|+.|++.. .+.|
T Consensus 142 vavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~-~~~~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 142 SAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAW-ESGN------GGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp EEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEE-CCCC------SSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred eEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeee-cCCC------cccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 9999999 999988888 8877777654321 22211 1000 00123578999999999888874 5999
Q ss_pred EEEEeeC
Q 010801 351 KLWDIRM 357 (501)
Q Consensus 351 ~lwd~~~ 357 (501)
..+|+..
T Consensus 209 ~~fD~~~ 215 (334)
T 2p9w_A 209 TAFDVSK 215 (334)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9999863
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.53 E-value=0.089 Score=52.47 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=93.1
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~w 295 (501)
....+++.+.+..|..+ ..+.|.+.+++ +.....+ +...-.....++++|.. ..|+... ..+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence 45578887666656554 67899999987 3322221 11222346899999965 4454444 25678877
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeeccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
++...... .+... -.....++++++++.|..++. +.|..+|+.. .....+.......
T Consensus 152 ~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~P- 210 (628)
T 4a0p_A 152 AMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPHP- 210 (628)
T ss_dssp ETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSCE-
T ss_pred eCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCCc-
Confidence 77654321 11111 245789999998887777643 7888888863 2223332211111
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
.++++.. +.++++-...+.|...|..+++.
T Consensus 211 --------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 211 --------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred --------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 4677765 45555666678898888776644
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.49 E-value=0.0012 Score=67.04 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=86.3
Q ss_pred eEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-CeEEEEE
Q 010801 221 INSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLVD 296 (501)
Q Consensus 221 v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~~wd 296 (501)
...|++.+.+..|+ +- ..+.|.++++. +.....+ +.........++++|.+ ..|+.+. .. +.|..++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l-------~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEE-------CCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEE-------EeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEe
Confidence 34577775444444 43 67889999987 3332222 11112335778899876 4444433 22 6777777
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
+..... +.+.. ..-.....|+++|++..|..++ . +.|..+++. +.....+........
T Consensus 526 ~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~- 585 (699)
T 1n7d_A 526 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 585 (699)
T ss_dssp SSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred CCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence 654321 11111 0013467899999877666654 3 789998885 333333321110000
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.. ..+++..+ .++++....+.|..++..+++
T Consensus 586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 00 35666554 455566667899999987763
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.49 E-value=0.039 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.....|+|.|+|++++ +..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence 4578999999998555 46679998886
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.41 E-value=0.076 Score=48.80 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=21.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.....|+|.|+|+++++ ..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 45789999999995554 5679999888
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.019 Score=51.40 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=101.4
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCC-CCcccceEEEEE---ecCCCcEEEEEe-----
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSS----- 287 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~---~p~~~~~l~~~~----- 287 (501)
.--.+++|.+....| ++. ..++|..||.. .+....+ ....... ......+..+.| .|++ +++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 334568897754444 555 89999999987 3333322 1110000 011224589999 6887 8888644
Q ss_pred --------CCCeEEEEEcc---CCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEEc-C-CcEEEE
Q 010801 288 --------SRGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD-Y-MNLKLW 353 (501)
Q Consensus 288 --------~dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~~-~-~~i~lw 353 (501)
.+..|..||+. +++.. ..... ...........+ -......++..++|+..++++ . +.|...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPV----WSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCS----EEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEE----EEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 26789999998 66543 11111 000000000000 012478999999999888765 3 454444
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+. +++.+..+........ .....+.++++|+|+.|++....|.+..+|+..
T Consensus 165 ~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 44 4554443321111100 011126899999999888887799999999884
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.39 E-value=0.075 Score=48.25 Aligned_cols=157 Identities=8% Similarity=0.002 Sum_probs=87.5
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEE-EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...+..+.+.+++.+++.+.++.+.. +|- ++.....+. ......+..+.+.+++ .++ .++.+|.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSD 231 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEec
Confidence 44678899999998888885454443 332 122222211 1234567889999987 655 455678877764
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
...+ +.+.. ...+.. .+...+..+.+.+++.+++++.++.|. +..+ .++.-..+........
T Consensus 232 ~D~G-------~tW~~-~~~~~~-----~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D-gG~tW~~~~~~~~~~~--- 293 (327)
T 2xbg_A 232 PDNS-------ENWGE-LLSPLR-----RNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD-GGQTWQQDVDVKKVPS--- 293 (327)
T ss_dssp TTEE-------EEECC-CBCTTS-----SCCSCEEEEEESSSSCEEEEESTTCEE-EESS-TTSSCEECGGGTTSSS---
T ss_pred CCCC-------CeeEe-ccCCcc-----cCCcceEEEEecCCCEEEEEeCCCeEE-EeCC-CCcccEEcCccCCCCC---
Confidence 2223 22222 000000 011357888999888888888777663 3333 3544444432111000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
. ...+.|.++++ ++.++.+|.|.-++
T Consensus 294 ------~---~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 294 ------N---FYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ------C---CCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ------C---eEEEEEECCCc-eEEEcCCceEEEEc
Confidence 1 15788875555 56667789876665
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.38 E-value=0.0012 Score=66.94 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=63.9
Q ss_pred eEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 221 INSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
...|++.|.+..|+.+ . .+.|..+++. +.....+ +...-.....|+|+|++.+++++-+..+.|..+|+
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 4567888865555554 2 3678777776 2221111 11112345789999987355555566788999998
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC-CcEEEEEeeCCCCceeEe
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~-~~i~lwd~~~~~~~~~~~ 365 (501)
...... .+... . +.-.....+++.. ..|+.. .. +.|..++..+ ++.+..+
T Consensus 570 dG~~~~----~~~~~-~----------~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~-G~~~~~i 621 (699)
T 1n7d_A 570 NGGNRK----TILED-E----------KRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT-GSDVNLL 621 (699)
T ss_dssp SSSCCE----EECCC-S----------SSCSSCCCCEEET--TEEEEECSTTTCEEEEETTT-EEEEECC
T ss_pred CCCceE----EEEec-C----------CcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccC-CCceEEe
Confidence 653221 11111 0 0001234455543 344433 33 8888888754 5555444
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.31 E-value=0.1 Score=47.95 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=62.9
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeCC-----C
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----G 290 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d-----g 290 (501)
...+.++|.|+|+++++-.++.|.+++ . +. ......+. ...........++++|+ +..++++-..+ +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 356789999999866666669999998 3 22 21111111 11222346789999998 41444444332 6
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
.|..++...+... ....++...+.... ..| ....++|.|||.+.++.
T Consensus 106 ~v~r~~~~~~~~~-~~~~l~~~~p~~~~-----~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGV-LDRVVLDGIPARPH-----GLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCCTT-----CCC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcC-ceEEEEEeCCCCCC-----CCc--CCceEEECCCCCEEEEE
Confidence 7888887643211 11112221000000 112 24689999999776663
No 300
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.29 E-value=0.073 Score=52.67 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=23.4
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeecccc
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
.+.+++.++ |+.++.||.++ ++.+-+++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 455565564 69999999997 888887765443
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.28 E-value=0.18 Score=50.24 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=103.8
Q ss_pred ccceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-..+..|+|++.+..|..+. ..+.|..+++++.... ...+..-.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~--------- 83 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL--------- 83 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence 45678999999777777665 4577888887654210 01122111
Q ss_pred ccccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.....|++. ..+. ++.+-...+.|.+.++.+.....+..... ..+..+...+....++-..
T Consensus 84 ---~~P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 84 ---LSPDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCCEEEETTTTEEEEEE
T ss_pred ---CCcCeEEEE--ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-------------CCCceEEEecCCCeEEEec
Confidence 346778886 4344 44454577899999988755433321111 1122222222222222222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+.....|...+++.. ....+..........|++.++++.|..+ ..+.|...|++ +.....+ ..+..
T Consensus 146 ~g~~~~I~r~~~dG~----~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~-------~~~~~ 213 (619)
T 3s94_A 146 WGEVPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAV-------VKGSL 213 (619)
T ss_dssp CSSSCEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC--------------
T ss_pred cCCCCEEEEEECCCC----ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEE-------EeCCC
Confidence 211223333333321 1111212234467889999887777776 67889888887 4332222 11111
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
....++++..+ .++.+-...+.|...|..+++
T Consensus 214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp --CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred CCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 22346666543 455554557889999987764
No 302
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.20 E-value=0.2 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.1
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeee
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
+..++.++.|+.|..+|..+++.....
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 457778888999999999999876654
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.14 Score=46.82 Aligned_cols=153 Identities=10% Similarity=0.120 Sum_probs=85.8
Q ss_pred ceEEEEecC--CCC--EEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeC---
Q 010801 220 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSS--- 288 (501)
Q Consensus 220 ~v~~l~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~--- 288 (501)
....+.+.+ ++. ++++- . +.+|.+|+++..+.....+. .+. ..-...+.+.+.++| .++++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft 187 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI 187 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence 444555544 343 44443 3 67888988775433332221 111 123457899999998 77766541
Q ss_pred --------------CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEE
Q 010801 289 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 352 (501)
Q Consensus 289 --------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~l 352 (501)
.|.|..+|. ++.. ...+. -...+.++|+||++.|..++ .+.|+.
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 234444443 2111 11221 23578999999999888764 389999
Q ss_pred EEeeCCCCce--eEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCC-CeEEEEec
Q 010801 353 WDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH 413 (501)
Q Consensus 353 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d-g~i~iwd~ 413 (501)
|++..+++.. ..+.....+ -.+++.+ +|++.+++..+ +.|..|+-
T Consensus 248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 9997433321 122111111 4789999 59988766644 34444443
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.93 E-value=0.38 Score=47.84 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=91.6
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC--CCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~~ 294 (501)
.....+++.+.++.|+.+ ..+.|.+.+++ +.....+ ....-.....|+++|.+ ..|+.... .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEE-------EeCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence 456789998866666555 78899999998 3322222 11222345789999986 44444443 466777
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeec--ccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH 370 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~--~~~ 370 (501)
.++...... .+... .-.....++++++++.|..++. +.|..+|+. +.....+.. ...
T Consensus 155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~ 215 (619)
T 3s94_A 155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH 215 (619)
T ss_dssp EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------
T ss_pred EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC
Confidence 776543221 11111 0235789999998777776642 788888875 333322211 111
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+ .++++..+ .++.+-...+.|...|..+++.
T Consensus 216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 1 36777665 4555555678888888877643
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.91 E-value=0.4 Score=47.75 Aligned_cols=199 Identities=13% Similarity=0.005 Sum_probs=106.4
Q ss_pred cceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..|+|++.+..|..+. .++.|..+++.+.... ..+....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~---------- 79 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL---------- 79 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC----------
Confidence 4678999999776666554 5688888887654321 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.....|++.+ ..++++.+-...+.|.+.++.+.....+..... ..+..+...+....++-..+.
T Consensus 80 --~~P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 80 --DYPEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-------------DSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-------------CCEEEEEEETTTTEEEEEECS
T ss_pred --CCcceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-------------CCcccEEEccCCCeEEEeCCC
Confidence 2356677752 234444554567889999887654333321111 111222222222222222221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..+.|...+++... ...+ .........|++.++++.|..+ ..+.|...|++.... +++ ......
T Consensus 144 ~~~~I~r~~~dG~~----~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~ 209 (628)
T 4a0p_A 144 GKPKIDRAAMDGSE----RTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPH 209 (628)
T ss_dssp SSCEEEEEETTSCS----CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSC
T ss_pred CCCEEEEEeCCCCc----eEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCC
Confidence 12334334443221 1122 1234567789999987777776 678999999883332 221 111223
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
...+++.. + .++++-...+.|...|..++
T Consensus 210 P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 210 PFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred ceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 46777765 3 55555555788888886554
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.80 E-value=0.28 Score=44.30 Aligned_cols=148 Identities=9% Similarity=0.217 Sum_probs=83.1
Q ss_pred CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC---Cc---EEEEEe-C--CCeEEEEEcc
Q 010801 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CN---LLAYSS-S--RGFVRLVDMR 298 (501)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~---~l~~~~-~--dg~i~~wd~~ 298 (501)
...+++.. ..+.+.+||+. ++.... +.. +.++.+...|.- .+ ++++.. . +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~--------~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKMLHS--------YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCEEEE--------ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcCC-CcEEEE--------ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 34455555 77899999996 554433 221 456667666631 02 233333 3 5789999774
Q ss_pred --CCcccccccceeecccccCCCcceeeecccceeEEEE--eeC-CC-EEEEE-cCCcEEEEEeeCC------CCceeEe
Q 010801 299 --QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--AND-GQ-HLLSR-DYMNLKLWDIRMD------STPVATF 365 (501)
Q Consensus 299 --~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~-~~-~l~~~-~~~~i~lwd~~~~------~~~~~~~ 365 (501)
++.+ ..+.. ...+ +..-...+..+++ +|. ++ ++++. .++.+..|++... .+.++++
T Consensus 108 p~~~~l-----~~i~~-~~~p-----v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 108 GKNGTL-----QSMTD-PDHP-----IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp TTTCCE-----EECSC-TTSC-----EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCce-----eeccc-cccC-----cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 3321 11110 0000 0000135677777 664 54 34444 4599999988421 3445666
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
...... ..+...+....|..+-++.-|..++.+
T Consensus 177 ~lgsq~----------------EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 177 KMNSQT----------------EGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp ECSSCE----------------EEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred cCCCCc----------------ceEEEcCCCCeEEEecccceEEEEeCC
Confidence 544332 578888888899999998666555644
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.69 E-value=0.29 Score=45.28 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=97.1
Q ss_pred ecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 226 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
...+|..++.+.++.||.-++... ..++.+. .+. .-..|..+..+|+| .+|+..+ +..|.+..+..+...
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTC-SSCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSC
T ss_pred EEcCCCEEEEEECCEEEEEECCCC-CcceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCcccc
Confidence 356788888887899999888833 3455432 221 11246789999999 9888875 558999988743211
Q ss_pred cc------c--cceeecccccCCCcceeeecccceeEEEEeeCC---CEEEE-EcCCcEEEEEeeCC-CCceeEeecccc
Q 010801 304 DH------S--ARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS-RDYMNLKLWDIRMD-STPVATFKIHEH 370 (501)
Q Consensus 304 ~~------~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~l~~-~~~~~i~lwd~~~~-~~~~~~~~~~~~ 370 (501)
.. . .+.+.. . +. ......+|..+.|+|-+ ..|++ .+|+.|++||+... .++. .+.....
T Consensus 100 ~~~~~~~~~~q~~ty~l-~--~~----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSI-D--EE----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCHHHHHTTEEEEEEG-G--GC----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred CcccccccccceeEEEc-C--Cc----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 10 0 112222 0 00 01124689999999943 35554 46799999999741 2333 3331111
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEE
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIF 411 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iw 411 (501)
. +.....+.++.+++|.+++-.|...+ ..|-|+-.
T Consensus 172 ---~---fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ---S---FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---E---EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---c---cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 0 01112223457999999887666644 77887643
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.56 E-value=0.45 Score=43.59 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEec
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~ 62 (501)
.....|+|.|+|++|.++...|.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 457899999999934445668999998843
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.55 E-value=0.14 Score=46.94 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=62.1
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeC---C---
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R--- 289 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~---d--- 289 (501)
...+.++|.|+|+++++-.++.|++++.. +...+. .+. ...........|+++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~--~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GKKLVA--SFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CEEEEE--ECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEee--ccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999986666566999999743 321211 111 11122345789999997 4144444332 3
Q ss_pred -CeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 290 -GFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 290 -g~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
+.|..|+........ ....++..-. . -..| ....++|.|||.+.++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~--~-----~~~h--~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIP--G-----AYIH--NGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEE--C-----CSSC--CCCCEEECTTSCEEEEC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCC--C-----CCCc--CCceEEECCCCcEEEEE
Confidence 567777776541100 0001222100 0 0012 34679999999877763
No 310
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.39 E-value=0.49 Score=42.15 Aligned_cols=136 Identities=7% Similarity=-0.065 Sum_probs=72.0
Q ss_pred EecCCCCEEEEEc---CCe--EEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc
Q 010801 225 SNNSDCETFVSAD---DLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR 298 (501)
Q Consensus 225 ~~~~~~~~l~~~~---d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~ 298 (501)
.|+++++.|+-.. ++. |..-+++ +....++ ..+.. ..++|++ +.|+..+. ...|...++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5677888777653 444 4444555 2222222 11211 3467788 66665554 6778888876
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
.+... +++.. ... ..++|++.+|+-.. + ..|..-++. +.....+....
T Consensus 176 g~~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~------ 226 (302)
T 3s25_A 176 SQSEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN------ 226 (302)
T ss_dssp TTEEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC------
T ss_pred CCCEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC------
Confidence 65422 22222 122 23569999888553 2 344444443 44444443211
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeC--CCeEEEEecCCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVG 416 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~ 416 (501)
...|+|++++|.-++. .+.|..-+++..
T Consensus 227 -------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 227 -------------IEHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp -------------EEEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred -------------cceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 2347788888876533 355666666543
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.36 E-value=0.39 Score=45.68 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=62.7
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC--CCcccceEEEEEecC---CCcEEEEEeC----
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPI---YCNLLAYSSS---- 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~---~~~~l~~~~~---- 288 (501)
...+.|+|.|+|+++++- ..+.|++++... +....+..+.. .+ .........|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 456799999999988877 445788887652 32222211111 11 112456789999995 4144444332
Q ss_pred --------CCeEEEEEccCCcc-cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 289 --------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 289 --------dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|.-++...... ......++..-. .+.......++|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---------~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---------SSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---------CCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---------CCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666543211 111112222100 00113478999999998777643
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.19 E-value=1.8 Score=46.52 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=29.7
Q ss_pred cceeEEEEeecCC----CCEEEEeeC-CCeEEEEeccccceeee
Q 010801 114 EKINRVRWCAAPN----GSMFILSTN-DKTIKLWKVRDQKVKKI 152 (501)
Q Consensus 114 ~~V~~v~~~~~~~----~~~l~s~s~-d~~i~lw~~~~~~~~~~ 152 (501)
..|.|+++.+.++ +.+++.|.. |++++|+++.+.+....
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK 597 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence 6699999875333 478889986 99999999987554433
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.17 E-value=0.28 Score=44.92 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=60.0
Q ss_pred cceEEEEecCCCC-EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeC------
Q 010801 219 FNINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS------ 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~------ 288 (501)
...+.|+|.|+|+ ++++-..+.|++++.. + .....+.-.+............++++|+ +..+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-K-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-T-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-C-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3567899999998 6665577999999854 2 2211110000011122345689999995 3144444332
Q ss_pred -CCeEEEEEccCCccc-ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 289 -RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 289 -dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...|..|++...... .....++..-.... ...| ....++|.|||.+.++.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-----~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLS-----TGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCB-----SSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCC-----CCcc--cCccEEECCCCcEEEEE
Confidence 235666666533110 00011222100000 0112 24679999999766654
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.06 E-value=0.73 Score=40.89 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C----
Q 010801 278 IYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 347 (501)
Q Consensus 278 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---- 347 (501)
++ ++++.|+.+ ..+.+||+.+.+- ..-...+..+ .-.+++. -++++++.|. +
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W--------~~~~~~p~~r--------~~~~~~~-~~~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGHW--------TNVTPMATKR--------SGAGVAL-LNDHIYVVGGFDGTAH 220 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTEE--------EEECCCSSCC--------BSCEEEE-ETTEEEEECCBCSSSB
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCcE--------EeCCCCCccc--------ccceEEE-ECCEEEEEeCCCCCcc
Confidence 55 778877764 4588888877532 1101111111 1112222 2566666653 1
Q ss_pred -CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----CeEEEEecCCCC
Q 010801 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 417 (501)
Q Consensus 348 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (501)
..+.+||+.+ .+ ...+....... .- ..++. -++++++.|+.+ ..|.+||.++.+
T Consensus 221 ~~~v~~yd~~~-~~-W~~~~~~p~~r----------~~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 221 LSSVEAYNIRT-DS-WTTVTSMTTPR----------CY---VGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCCEEEEETTT-TE-EEEECCCSSCC----------BS---CEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cceEEEEeCCC-Cc-EEECCCCCCcc----------cc---eeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5688999864 32 22232111111 00 12222 267777887765 357888887663
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.04 E-value=0.93 Score=41.97 Aligned_cols=119 Identities=6% Similarity=0.004 Sum_probs=71.4
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEe
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~ 355 (501)
..+| .-++++ .++.||.-++.... . .+.+.. +..- --..+..+..+|+|++||..++..|.|-.+
T Consensus 29 ~~n~-t~i~~a-~~n~iR~~~i~~~~-~---Yk~L~~-~~~i--------~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~L 93 (452)
T 3pbp_A 29 SQNG-TRIVFI-QDNIIRWYNVLTDS-L---YHSLNF-SRHL--------VLDDTFHVISSTSGDLLCLFNDNEIFVMEV 93 (452)
T ss_dssp ETTT-TEEEEE-ETTEEEEEETTTCS-S---CEEEEC-TTTC--------CCCTTCEEEECTTSSEEEEECSSEEEEEEC
T ss_pred EcCC-CEEEEE-ECCEEEEEECCCCC-c---ceEEec-Cccc--------ccCceeEEEECCCCCEEEEecCCeEEEEEe
Confidence 3444 444443 35788888877432 1 134433 1000 012578899999999999888889999998
Q ss_pred eCCCCc---------e--eEeeccccccccccccCCCCCcceeeEEEEcCC---CcEEEEEeCCCeEEEEecCCCCc
Q 010801 356 RMDSTP---------V--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 356 ~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
...... + +.+...... ...-..|..+.|+|- +..|++-..|+.|++||+.....
T Consensus 94 P~~~~~~~~~~~~~~~q~~ty~l~~~~---------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 94 PWGYSNVEDVSIQDAFQIFHYSIDEEE---------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp CTTCSCCCCHHHHHTTEEEEEEGGGCC-----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred cCccccCcccccccccceeEEEcCCcc---------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 631111 1 122211100 000112378999995 56899999999999999986433
No 316
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.96 E-value=0.82 Score=40.67 Aligned_cols=166 Identities=6% Similarity=0.043 Sum_probs=90.3
Q ss_pred cceEEEEecCCCCEEEE-E---c----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeC
Q 010801 219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSS 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~ 288 (501)
..|..-..+++.++++. | . .|.+.+|..+ .+... . +++|.+.-..+.+. +...++|+.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ-~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ-P-------IEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEE-E-------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccc-e-------eeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45656666788887654 3 2 3678899988 33322 2 57776544333332 111134454443
Q ss_pred C---CeEEEEEccCC--cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 289 R---GFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 289 d---g~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
. +.+++.++... .......+..+. ..++.. -..-..++..++.-..+..-+ .|-|++||+.+ +.++
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi-~fppea------~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i 294 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 294 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEE-CCCTTC------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCccccccee-eCCccc------cCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEE
Confidence 2 58888888543 110000111111 111110 123345677777655555444 59999999997 8888
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..-+.....+ ...+-+....=++.....|.|.--.+++.
T Consensus 295 ~~nrIS~d~i---------------F~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 295 YMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEECCSSCE---------------EEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEeccCCCce---------------EEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 7766555543 22333334344556667888877777655
No 317
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.95 E-value=0.83 Score=40.65 Aligned_cols=151 Identities=9% Similarity=0.116 Sum_probs=97.8
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccC
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
+..|.|.|+.......+. .+ ..-+.-.+|.. +.+|.-. ...+.++|+.+.... +.+..
T Consensus 48 ~~~VvIiDl~n~~~~~Rr------pi-----~AdsAIMnP~~-~ViALra-g~~LQiFnletK~kl----ks~~~----- 105 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRR------PI-----SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM----- 105 (365)
T ss_dssp EEEEEEEETTSTTSCEEE------EC-----CCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC-----
T ss_pred CCEEEEEECCCCCCcccc------cc-----ccceeeeCCCc-cEEEEec-CCeEEEechHHhhhh----cceec-----
Confidence 447888888854443321 01 11244568987 8777765 788999999987543 33222
Q ss_pred CCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
...|.-=.|-. .+.|+--++..|+-|++..+..+.+.+.-|..... ..+.....+++.+
T Consensus 106 ---------~e~VvfWkWis-~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~-----------~QIInY~~d~~~k 164 (365)
T 2xzh_A 106 ---------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQK 164 (365)
T ss_dssp ---------SSCEEEEEECS-SSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTT-----------CEEEEEEECTTSC
T ss_pred ---------CCccEEEEecC-CCeEEEEcCCcEEEEcccCCCCCceeeecchhccc-----------ceEEEEEECCCCC
Confidence 23444444543 34555556689999999765678888887766421 2236778889999
Q ss_pred EEEEEeC-------CCeEEEEecCCCCcceEEEecccCcccce
Q 010801 398 HFATGSY-------SNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (501)
Q Consensus 398 ~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 433 (501)
+++..+- .|.+.+|+.+. ...+.+++|.......
T Consensus 165 W~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa~F~~~ 205 (365)
T 2xzh_A 165 WLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQF 205 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEEEEEEE
T ss_pred EEEEEeEeccCCccceeEEEEeecc--cccceeeeeeeeeEEE
Confidence 8774432 37789999884 4568888887655433
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.61 E-value=0.57 Score=39.07 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=35.9
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC-CCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
..+..|.+.|+|.+.++. |+.++-......... .-.. ....+ ...-..-+.+.|.+++ .++++. +|.
T Consensus 135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~-~wl~-~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~ 202 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQD-NWLA-RATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGK 202 (236)
T ss_dssp GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTC-CHHH-HCEEEESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred CceEEEEECCCceEEEEe-CCcEEecCCCCCCCc-cccc-ccceeccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence 567899999999888888 777544322211100 0000 00001 1222334557788888 666655 663
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.59 E-value=1.3 Score=40.18 Aligned_cols=117 Identities=11% Similarity=0.034 Sum_probs=65.0
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEe--CCCe
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSS--SRGF 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~--~dg~ 291 (501)
-...+.|+|.|+|.++++- ..|.|++++.. .+....+..+ +............|+++|+ +..+.++-+ .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 4567899999999988887 59999999865 2322111111 1112233456789999995 214444322 3456
Q ss_pred EEEEEccCCc----ccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 292 VRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 292 i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|.-|.+..+. .......++..-. . -..| .-..++|.|||.+.++.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p---~----~~~H--~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIP---K----GVIH--NGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEEC---C----CSSC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCC---C----CCCc--cCccccCCCCCCEEEEE
Confidence 6666665421 1111112222200 0 0122 35679999999877763
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.30 E-value=0.19 Score=41.88 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=63.5
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC--CCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
..+..++|+|+|.+.++ .++.+.-.+..+... ..-+. ....+ .+-.. -.++.|.|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-~~W~~-s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-DNWMG-RAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHH-HCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCc-ccccc-cccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36779999999987766 777766655432110 00000 00001 01111 3688999998 76666 569888777
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEE
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 352 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~l 352 (501)
-.+... ..+-. .. . ..-.+-=..+..+.+.|+|.+.+.. ++.++-
T Consensus 114 pP~~~~-----~~Wl~-~a-~---~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 114 PPQSDT-----DNWIA-RA-T---EVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CCCSTT-----CCHHH-HS-E---EEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CCcCCC-----Cceec-cc-c---EeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 533211 11110 00 0 0000001357999999999988888 777543
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.26 E-value=1.9 Score=40.09 Aligned_cols=189 Identities=7% Similarity=0.053 Sum_probs=104.5
Q ss_pred CcceEEEeccCceeeeeeEeecCCc----ccceEEEEecCCCCEEEE-E---c----CCeEEEEECCCCCeeeeeeecCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
+..+..|+++.. ..+.+.| ..| ...|..-..+++.++++. | . .|.+.+|..+ .+... .
T Consensus 124 ~taVyHWsi~~~--s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ-~----- 193 (494)
T 1bpo_A 124 DNAVYHWSMEGE--SQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ-P----- 193 (494)
T ss_dssp SSEEEEEESSSS--CCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEE-E-----
T ss_pred CCeeEEecccCC--CCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccc-h-----
Confidence 445666666542 2344433 222 345666666888887764 3 2 3678899988 33222 2
Q ss_pred CCCCCcccceEEEEEecC--CCcEEEEEeCC---CeEEEEEccCCc--ccccccceeecccccCCCcceeeecccceeEE
Q 010801 261 SNMDDLTEVITSAEFHPI--YCNLLAYSSSR---GFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~--~~~~l~~~~~d---g~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+++|.+.-..+....+ ...+|+.+... +.+++.++.... ......+..+. ..++.. -..-..++
T Consensus 194 --ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe~------~~DFPvam 264 (494)
T 1bpo_A 194 --IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAM 264 (494)
T ss_dssp --ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTTS------TTCCEEEE
T ss_pred --heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee-eCCccc------ccCceeEE
Confidence 6778665544443311 11355555543 789999885431 00000111121 111111 12334567
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
..++.-..+..-+ .|-|++||+.+ +.++..-+.....+ ...+-.....-++.....|.|.--.
T Consensus 265 qvs~kygviyviTK~G~i~lyDleT-gt~i~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEE
T ss_pred EecccCCEEEEEecCceEEEEeccc-ceeeeeecccCCce---------------EEecccCCCCcEEEEccCceEEEEE
Confidence 7787666665544 49999999997 88877766555443 2334444444566666888887777
Q ss_pred cCCC
Q 010801 413 HGVG 416 (501)
Q Consensus 413 ~~~~ 416 (501)
+++.
T Consensus 329 v~e~ 332 (494)
T 1bpo_A 329 VEEE 332 (494)
T ss_dssp ECTT
T ss_pred Eccc
Confidence 7665
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.47 E-value=2.4 Score=37.45 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCcEEEEEeCCC-----eEEEEecCCC
Q 010801 395 DGLHFATGSYSN-----LLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~~~dg-----~i~iwd~~~~ 416 (501)
++++++.|+.++ .+.+||.++.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677888887653 4888888866
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.25 E-value=3.1 Score=37.82 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=18.2
Q ss_pred cCCCcEEEEEeCCC------eEEEEecCCCCcceE
Q 010801 393 SGDGLHFATGSYSN------LLRIFSHGVGSAGGI 421 (501)
Q Consensus 393 s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~ 421 (501)
..++++++.|+.++ .|.++++++++....
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 34778888888643 356668887755533
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.14 E-value=2.9 Score=37.10 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC--------------C
Q 010801 228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G 290 (501)
Q Consensus 228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------------g 290 (501)
.++..+..+ +++.|...+.+ +....++ . .. .+--+++++ ..|+.+... .
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l--------~--~~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKL--------S--ND--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEE--------E--EE--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEc--------c--CC--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence 466666654 35666666665 3333332 1 11 233467888 777666543 3
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---CCcEEEEEeeCCCCceeEeec
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~---~~~i~lwd~~~~~~~~~~~~~ 367 (501)
.|+..++...+. ..+.. -....|++++++|+-.. ++.-.||-+..++.....+..
T Consensus 89 ~Iy~i~~dg~~~-----~~l~~-----------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~ 146 (302)
T 3s25_A 89 SLCRIKRNGHGS-----TVLDP-----------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN 146 (302)
T ss_dssp EEEEEETTSCCC-----EEEEC-----------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred eEEEEeCCCCcc-----eEeec-----------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence 566667665532 11221 12336888999888654 344555555444555555544
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCC
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS 417 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~ 417 (501)
+.. .+++++++.|.-.+. ...|..-++..+.
T Consensus 147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 322 234567777775554 6778888877653
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.10 E-value=4.1 Score=38.63 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=23.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
...+.|+|.|+|+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 45689999999997776543346888775444
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.89 E-value=4.8 Score=43.61 Aligned_cols=136 Identities=7% Similarity=0.100 Sum_probs=69.5
Q ss_pred ccceEEEEecCCCCEEEE-E-------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEe
Q 010801 218 DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS 287 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~ 287 (501)
...|..-..+++.++++. | -.|.+.+|..+ .+.. + .+++|.+....+... +....+++.+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~s-Q-------~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVS-Q-------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccc-h-------hhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 345656666778887654 3 24778888887 2222 1 256776554444432 22113444433
Q ss_pred C---CCeEEEEEccCC-cccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 288 S---RGFVRLVDMRQS-ALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 288 ~---dg~i~~wd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
. .+.+++.++... .... ...+..+. ..+|. .-..-..++..++.-..+..-+ .|-|++||+.+ +.+
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~-~~~~~------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~ 292 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTC 292 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccc-cCCcc------cccCcceEEEeccccCEEEEEecCceEEEEeccc-chh
Confidence 3 268888888543 1000 00011111 00010 0112334566676555554444 49999999997 777
Q ss_pred eeEeecccc
Q 010801 362 VATFKIHEH 370 (501)
Q Consensus 362 ~~~~~~~~~ 370 (501)
+..-+....
T Consensus 293 i~~~ris~~ 301 (1630)
T 1xi4_A 293 IYMNRISGE 301 (1630)
T ss_pred hhhccccCC
Confidence 655444443
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.72 E-value=3.9 Score=37.05 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=25.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
...+.|+|.|||+++++--..|.|++++..++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 46789999999997776544899988875544
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.77 E-value=4.9 Score=35.50 Aligned_cols=24 Identities=0% Similarity=0.131 Sum_probs=17.9
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCCCc
Q 010801 395 DGLHFATGSYS-----NLLRIFSHGVGSA 418 (501)
Q Consensus 395 ~~~~l~s~~~d-----g~i~iwd~~~~~~ 418 (501)
++++++.|+.+ ..+.+||.++.+.
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 67888888854 5688899887644
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.93 E-value=6.3 Score=34.86 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=70.1
Q ss_pred CCCEEEEE-c-----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| . ...+.+||..+. .-.. +. .++........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~-~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERD-EWHL-VA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTT-EEEE-CC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCC-eEeE-CC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 55566664 2 246888888733 2211 11 11111111122222 55 777877764 45888888
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-----CcEEEEEeeCCCCceeEeeccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-----~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
.+.+ +..-...+..+ .-.+++.. ++++++.|+ + ..+.+||+.+ . .-..+......
T Consensus 192 ~~~~--------W~~~~~~p~~r--------~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~ 252 (308)
T 1zgk_A 192 ERNE--------WRMITAMNTIR--------SGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVET-E-TWTFVAPMKHR 252 (308)
T ss_dssp TTTE--------EEECCCCSSCC--------BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTT-T-EEEECCCCSSC
T ss_pred CCCe--------EeeCCCCCCcc--------ccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCC-C-cEEECCCCCCC
Confidence 7653 11101111111 11122222 566666653 1 5688999864 2 22222211111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----CeEEEEecCCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 417 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (501)
.. - .+++.. ++++++.|+.+ ..+.+||+++.+
T Consensus 253 r~----------~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 RS----------A---LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CB----------S---CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cc----------c---eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 10 0 123332 67777877754 457788887663
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.51 E-value=8.9 Score=35.74 Aligned_cols=154 Identities=9% Similarity=0.110 Sum_probs=99.4
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
++..|.|.|+.......+. .-..-+.-.+|.. +.++.-. ...+.++|+.+.... +.+..
T Consensus 46 ~~~~vvIiDl~~~~~~~rr-----------pi~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~kl----ks~~~---- 104 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM---- 104 (494)
T ss_dssp TCCEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEE----EEEEC----
T ss_pred CCCeEEEEECCCCCcceec-----------ccccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhh----cceec----
Confidence 3457888888854443321 0112345578987 7777765 789999999987543 33322
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
...|.-=.|-.+ +.|+--++..|+-|++..+..+...+.-|..... ..+.....+++.
T Consensus 105 ----------~e~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~-----------~QIInY~~d~~~ 162 (494)
T 1bpo_A 105 ----------TDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQ 162 (494)
T ss_dssp ----------SSCCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT-----------CEEEEEEECTTS
T ss_pred ----------CCCceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheecchhccc-----------ceEEEEEECCCC
Confidence 234544445443 4566556789999999755678888887766421 223678889999
Q ss_pred cEEEEEe-------CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 397 LHFATGS-------YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 397 ~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++++..+ -.|.+.+|+.+.+ ..+.+++|.........
T Consensus 163 kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~ 206 (494)
T 1bpo_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (494)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEEC
T ss_pred CeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEec
Confidence 9877443 2477899998844 55888888776544433
No 331
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.61 E-value=12 Score=35.53 Aligned_cols=119 Identities=14% Similarity=0.031 Sum_probs=61.3
Q ss_pred cceEEEEecCCCC--EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCC----CcccceEEEEEecC----CCcEEEEEeC
Q 010801 219 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI----YCNLLAYSSS 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~----~~~~l~~~~~ 288 (501)
...+.|+|.|+|. +|++-..|.|++++.+.......+.++...... ........|+|+|+ + .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567899999995 555558899999975421111111111111111 12456789999996 4 44443332
Q ss_pred --C----------CeEEEEEccCCc--ccc--cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 289 --R----------GFVRLVDMRQSA--LCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 289 --d----------g~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
+ ..|.-|.+..+. ... ....+++. .. + ...| ....|+|.|||.+.++..|
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~-~~-~-----~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEV-AE-L-----HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEE-EE-S-----SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEc-CC-C-----CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 144446554321 110 11122222 10 0 0123 4688999999987776443
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.31 E-value=7.9 Score=34.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.0
Q ss_pred CEEEEEecCCcEEEEEecCCcC
Q 010801 45 DYLAVGDRGGRVILFETVGGKN 66 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~ 66 (501)
..+++++.||.|.-+|..+|+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4677888999999999888865
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.09 E-value=13 Score=32.63 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCCEEEEEecC----CcEEEEEecCC
Q 010801 43 TGDYLAVGDRG----GRVILFETVGG 64 (501)
Q Consensus 43 ~g~~latg~~d----g~i~iw~~~~~ 64 (501)
++.+++.|+.+ ..+.+||..++
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCC
Confidence 56677777754 56777887765
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.06 E-value=13 Score=32.57 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=33.5
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-----eEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~~wd~ 297 (501)
++++++.| .+ ..+.+||..+ .+-.. +. .+.........+. -++ ++++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~-~~----~~~~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTT-NAWRQ-VA----DMNMCRRNAGVCA--VNG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTT-TEEEE-EC----CCSSCCBSCEEEE--ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCC-CCEee-CC----CCCCccccCeEEE--ECC-EEEEECCcCCCcccccEEEEcC
Confidence 45666665 43 4688999883 32222 11 1111111112222 255 7888887653 4888888
Q ss_pred cCC
Q 010801 298 RQS 300 (501)
Q Consensus 298 ~~~ 300 (501)
.+.
T Consensus 275 ~~~ 277 (302)
T 2xn4_A 275 TTD 277 (302)
T ss_dssp TTT
T ss_pred CCC
Confidence 775
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.48 E-value=15 Score=32.52 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=16.0
Q ss_pred cCCCcEEEEEeC-C-----CeEEEEEccCC
Q 010801 277 PIYCNLLAYSSS-R-----GFVRLVDMRQS 300 (501)
Q Consensus 277 p~~~~~l~~~~~-d-----g~i~~wd~~~~ 300 (501)
-++ ++++.|+. + ..+.+||+.+.
T Consensus 147 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 147 HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence 345 77777776 2 46888898775
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.35 E-value=15 Score=40.01 Aligned_cols=154 Identities=9% Similarity=0.114 Sum_probs=92.5
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
....|.|.|+.......+ ..-..-+.-.+|.. +.++.-. ..++.++|+.+.... +.+..
T Consensus 46 ~~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~---- 104 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM---- 104 (1630)
T ss_pred CCceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhh----ccccc----
Confidence 344788888874443321 11112344578886 7766654 789999999876433 22222
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
..+|.-=.|-. .+.|+-.++..|+-|++..+..|...+.-|.... + ..+..-..+++.
T Consensus 105 ----------~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~--------~---~QIinY~~d~~~ 162 (1630)
T 1xi4_A 105 ----------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--------G---CQIINYRTDAKQ 162 (1630)
T ss_pred ----------CCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc--------c---CeeEEeeeCCCC
Confidence 12344334443 3445555568999999974456666666555432 1 122577888888
Q ss_pred cEEEEEe-------CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 397 LHFATGS-------YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 397 ~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++++..| -.|.+.+|+++.+ ..+.+++|.........
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 8877433 3588999998854 44677777665544333
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.35 E-value=31 Score=35.09 Aligned_cols=170 Identities=9% Similarity=0.075 Sum_probs=82.8
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
..|.++...++|.+.+... +-+.+++... ..... +...... ..-....|.++....+| .+.+ |+..| +.++..
T Consensus 232 ~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~-~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g-~lWi-GT~~G-l~~~~~ 305 (758)
T 3ott_A 232 NSIKSLALDGNGDLLAGTD-NGLYVYHNDT-TPLQH-IIHDSRNIQSLTNNIIWNIFADQEH-NIWL-GTDYG-ISLSRY 305 (758)
T ss_dssp EEEEEEEECTTCCEEEEET-TEEEEECCTT-SCCEE-ECCCTTCTTSCSCSCEEEEEECTTC-CEEE-EESSS-EEEECC
T ss_pred CeEEEEEEcCCCCEEEEeC-CceeEEecCC-CcEEE-EEcCCCCcCcCCcCeEEEEEEcCCC-CEEE-EeCCc-cccccc
Confidence 3577888777887666554 4577888763 22221 1111000 01123568999888877 6544 45556 544432
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCC-CceeEeecccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLC 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~ 376 (501)
.... +.+.. ..... ......|.++.-..+|.+-+.. .+-+..++..+.. .....+.......
T Consensus 306 -~~~~-----~~~~~-~~~~~-----~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~---- 368 (758)
T 3ott_A 306 -NSAL-----QFIPI-SQITG-----TGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTY---- 368 (758)
T ss_dssp -CC-C-----EEEEH-HHHSC-----SCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSS----
T ss_pred -CCce-----eEEec-ccCCC-----CCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCC----
Confidence 1110 11111 00000 0012457888877788766554 3446666654211 1122222110000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.+ .... |.++.-..+|++.+ |+ ++-+..|+..+++
T Consensus 369 ~l-~~~~---v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 369 PL-SHNR---IRHIYEDKEQQLWI-AT-DGSINRYDYATRQ 403 (758)
T ss_dssp CC-SCSC---EEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred CC-CCCc---eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence 00 0111 26777777887655 44 3568889987763
No 338
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=84.92 E-value=19 Score=31.42 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| .+ ..+.+||+.+ ..-.. +. .++........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~-~~W~~-~~----~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHT-GHWTN-VT----PMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTT-TEEEE-EC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCC-CcEEe-CC----CCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeC
Confidence 55666665 33 5688899873 32222 11 11111111122222 45 788887764 46889998
Q ss_pred cCCc
Q 010801 298 RQSA 301 (501)
Q Consensus 298 ~~~~ 301 (501)
.+.+
T Consensus 230 ~~~~ 233 (301)
T 2vpj_A 230 RTDS 233 (301)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8753
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=83.27 E-value=23 Score=31.08 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=33.7
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| .+ ..+.+||+.+ .. ...+. .+.........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPER-NE-WRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTT-TE-EEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCC-Ce-EeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 55566665 32 4688889873 32 22111 11111112222332 55 788887764 56889998
Q ss_pred cCC
Q 010801 298 RQS 300 (501)
Q Consensus 298 ~~~ 300 (501)
.+.
T Consensus 239 ~~~ 241 (308)
T 1zgk_A 239 ETE 241 (308)
T ss_dssp TTT
T ss_pred CCC
Confidence 775
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.73 E-value=2.5 Score=40.68 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=52.9
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeee--eeecC---CCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMK---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
....+..+|||++++++ -+.++.++|++.-...+. +++.+ ....+ ..-.....+|.++| +...+...|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 34467889999999885 799999999883111000 00000 00111 23445788999999 877777889999
Q ss_pred EEEEccCC
Q 010801 293 RLVDMRQS 300 (501)
Q Consensus 293 ~~wd~~~~ 300 (501)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99999763
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.91 E-value=11 Score=36.44 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=51.0
Q ss_pred ccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCC-----CCc-------eeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 327 IASISDIKFANDGQHLLSRD--YMNLKLWDIRMD-----STP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
......+.++|||++++++. +.++.++|++.- .+. ....+...++ ...+|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP----------------lHt~F 385 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP----------------LHTTF 385 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE----------------EEEEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc----------------cEEEE
Confidence 34567889999999999875 489999998731 111 1111111111 57999
Q ss_pred cCCCcEEEEEeCCCeEEEEecCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.++|....+---|..|.-|+++.
T Consensus 386 d~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 386 DGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCceEeeeeecceEEEEeccH
Confidence 99996666667899999999865
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=77.86 E-value=36 Score=29.94 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=15.6
Q ss_pred cCCCcEEEEEeC------CCeEEEEEccCC
Q 010801 277 PIYCNLLAYSSS------RGFVRLVDMRQS 300 (501)
Q Consensus 277 p~~~~~l~~~~~------dg~i~~wd~~~~ 300 (501)
.++ ++++.|+. -..+.+||+.+.
T Consensus 157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp ETT-EEEEECCEESSSCBCCCEEEEETTTT
T ss_pred ECC-EEEEEcCCCCCCCccceEEEEcCCCC
Confidence 355 77777764 245888998875
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=76.39 E-value=67 Score=32.27 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCCEEEEE-cC------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC--eEEEEEccC
Q 010801 229 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 299 (501)
Q Consensus 229 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~ 299 (501)
++++++.| .+ +.+.+||..+. . ...+. .++..... .+++.-.++ ++++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~-W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-E-WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-E-EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-c-EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 66666665 32 35788888732 2 22111 11111111 122222366 8888887654 689999887
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEcC--------CcEEEEEeeCCCCc-----eeEe
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDSTP-----VATF 365 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~~--------~~i~lwd~~~~~~~-----~~~~ 365 (501)
..-. ........+..+ ....++.+..+ +++++.|+. +.+.+||+.+ ... ...+
T Consensus 523 ~~W~-----~~~~~g~~p~~r-------~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~ 589 (695)
T 2zwa_A 523 EIFK-----DVTPKDEFFQNS-------LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK 589 (695)
T ss_dssp TEEE-----ECCCSSGGGGSC-------CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred CceE-----EccCCCCCCCcc-------cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence 5311 110000011111 12233555554 556665531 4688999976 431 2222
Q ss_pred ecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC--------CeEEEEecCCCCc
Q 010801 366 KIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSA 418 (501)
Q Consensus 366 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~iwd~~~~~~ 418 (501)
... ...... .+++...++++++.|+.+ ..|.+||+.+...
T Consensus 590 ~~~p~~~R~~-------------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 590 LQHPLFQRYG-------------SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EECGGGCCBS-------------CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCCCCCCccc-------------ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 211 111100 233444347788887743 4588999887643
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.09 E-value=41 Score=29.19 Aligned_cols=216 Identities=8% Similarity=-0.050 Sum_probs=103.0
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.|..++..... .++. .|+.|..|-.+..++.-. -......|..++.... ..++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h-~~~l-~~G~v~~wG~n~~Gqlg~--------p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-KGGKVLGWGANLNGQLTM--------PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSE-EEEE-ETTEEEEEECCSSSTTSC--------CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCe-EEEE-ECCEEEEEeCCCCCCCCC--------CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence 46666654332 2222 388999998774443211 0011235677776654 33444 5 89999997654
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
.........+ ...|..++...+...+++ +|.|+.|-....+++-...... .
T Consensus 91 ~Gqlg~P~~~-----------------~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~-~--------- 141 (282)
T 3qhy_B 91 DGQTTVPAEA-----------------RSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQ-S--------- 141 (282)
T ss_dssp TSTTCCCGGG-----------------SSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGG-S---------
T ss_pred CCCCCCCccc-----------------CCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCC-C---------
Confidence 3222100000 135777776654444444 7899999765433321000000 0
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-e
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H 458 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 458 (501)
.+..++...+. .+.-. ||.|+.|-......+.... .-...+..++.-. . +.++. .++. .
T Consensus 142 ------~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~--~------hs~al--~~G~v~ 201 (282)
T 3qhy_B 142 ------GVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPA-EAQSGVDDVAGGI--F------HSLAL--KDGKVI 201 (282)
T ss_dssp ------SEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECS--S------EEEEE--ETTEEE
T ss_pred ------CeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCce-ecCCCeEEEEecC--C------EEEEE--ECCeEE
Confidence 11445544332 22233 7888888765433331110 0112233333322 1 11333 4666 7
Q ss_pred ecccc--CCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 459 ENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 459 iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.|..+ ..+.........|..++....... |.. ++.+|.|-
T Consensus 202 ~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al~-~g~v~~wG 243 (282)
T 3qhy_B 202 AWGDNRYKQTTVPTEALSGVSAIASGEWYSL-ALK-NGKVIAWG 243 (282)
T ss_dssp EEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EEE-TTEEEEES
T ss_pred EEECCCCCCCCCCcccCCCceEEEcCCCEEE-EEE-CCEEEEec
Confidence 77222 222222223346777776554443 444 77788773
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.79 E-value=57 Score=34.24 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
..+.+++..++. .++++-+.|+++|+|++.+++..
T Consensus 236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence 356777777777 89999999999999999998754
No 346
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=73.13 E-value=48 Score=29.07 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.8
Q ss_pred CCcEEEEEeCCC-----eEEEEecCCCC
Q 010801 395 DGLHFATGSYSN-----LLRIFSHGVGS 417 (501)
Q Consensus 395 ~~~~l~s~~~dg-----~i~iwd~~~~~ 417 (501)
++++++.|+.++ .+.+||+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 677888887654 58888988763
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=72.65 E-value=83 Score=31.59 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCCEEEEeeCCC--eEEEEeccccceee
Q 010801 126 NGSMFILSTNDK--TIKLWKVRDQKVKK 151 (501)
Q Consensus 126 ~~~~l~s~s~d~--~i~lw~~~~~~~~~ 151 (501)
++..++.|+.++ .+.+||..+.....
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 677888887544 68888888776544
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.89 E-value=66 Score=32.21 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~ 155 (501)
..|.++.+ +..++++-+.|+++|+|++.++++......
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665554 467999999999999999999998877654
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.05 E-value=97 Score=31.35 Aligned_cols=172 Identities=10% Similarity=-0.031 Sum_probs=88.5
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
..|.++.-..+|.+.+...+ -+..++..... .....+........-....|.++.-.++| ++.+ |+ ++-|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence 46888887778876665554 46666654211 11111111000001123468888888877 6554 44 457899998
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCC----CCce---eEeecccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD----STPV---ATFKIHEH 370 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~----~~~~---~~~~~~~~ 370 (501)
.+++.. .+.. ...... .....|.++...++|++.+....+-|.++|..+. .... ..+.....
T Consensus 400 ~~~~~~-----~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (758)
T 3ott_A 400 ATRQFI-----HYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG 468 (758)
T ss_dssp TTTEEE-----EEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred CCCcEE-----Eeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence 776432 1111 000000 0124577887777776555443467888886420 1111 11111111
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
. .... +.++...++|++.+.++..+-|..+|..++
T Consensus 469 l--------~~~~---i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 469 L--------SGMF---INQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp C--------SCSC---EEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred c--------ccce---eeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 0 0111 267888888987764444445777888765
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=66.09 E-value=17 Score=32.64 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=59.8
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE---EeeCCCEEEEE--cCCcEEEEEe
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSR--DYMNLKLWDI 355 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~sp~~~~l~~~--~~~~i~lwd~ 355 (501)
.++++++.||.|.-.|..+|+.. |....... .++.... ...++..++.. .+|.|+.++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~------W~~~~~~~----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHII------WSIEPENF----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEE------EEECGGGS----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEE------EEecCCcc----------CCcEEecCCccccCCcEEEEEECCCCEEEEEEC
Confidence 57888999999999999998754 22200000 0010000 00123333332 4688888887
Q ss_pred eCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-----------CCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 356 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-----------GDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.+ +.....+..... +. . ..+... ..+..+++|+.+|.+...|+.+|+.+ ..+.
T Consensus 75 ~~-G~~~~~~~~~~l-v~-~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~-W~~~ 138 (339)
T 2be1_A 75 HQ-GLQKLPLSIRQL-VS-T------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII-SAFG 138 (339)
T ss_dssp TT-EEEEEEEEHHHH-HT-T------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE-EEES
T ss_pred CC-CcEEeeeccccc-ee-c------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE-EEEe
Confidence 64 433322222111 00 0 001111 14567889999999999999999544 4443
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.06 E-value=90 Score=29.44 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.8
Q ss_pred cceEEEEEccCCC-EEEEEecCCcEEEEEec
Q 010801 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETV 62 (501)
Q Consensus 33 ~~v~~v~~s~~g~-~latg~~dg~i~iw~~~ 62 (501)
+..+.|+|.|||. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568999999996 44455678999999744
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=62.49 E-value=77 Score=27.42 Aligned_cols=144 Identities=8% Similarity=-0.046 Sum_probs=72.9
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.|..++...+. .++.. +|.|+.|-.+..++.-. .......|..++..... .++. . ||.|..|-...
T Consensus 103 ~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEEE-E-CCEEEEecCCC
Confidence 45566654443 33334 88999997764443211 01123457777665442 3333 4 79999997654
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
......... ....|..++...+... +. .++.|+.|=....+++-.......
T Consensus 169 ~gqlg~p~~-----------------~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n~~gqlg~p~~~~~---------- 219 (282)
T 3qhy_B 169 FGQTTVPAE-----------------AQSGVDDVAGGIFHSL-AL-KDGKVIAWGDNRYKQTTVPTEALS---------- 219 (282)
T ss_dssp TSTTSCCGG-----------------GGSSEEEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGGGS----------
T ss_pred CCCCCCcee-----------------cCCCeEEEEecCCEEE-EE-ECCeEEEEECCCCCCCCCCcccCC----------
Confidence 322110000 0235666766544333 33 578999997654333210000000
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.+..++...+...+++ ||.|+.|-...
T Consensus 220 ------~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 220 ------GVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp ------SCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred ------CceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 1145665544433333 89999996554
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.49 E-value=1.8e+02 Score=30.57 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=31.0
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+.+++..++..++++- .|+++|+|++. .++++...++.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~-t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETT-TTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECC-CCCeEeeeccc
Confidence 356677777787788775 99999999999 66777776654
No 354
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=58.42 E-value=1e+02 Score=27.47 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=13.3
Q ss_pred CCCEEEEeeC-CCeEEEEeccc
Q 010801 126 NGSMFILSTN-DKTIKLWKVRD 146 (501)
Q Consensus 126 ~~~~l~s~s~-d~~i~lw~~~~ 146 (501)
++..++.|+. ...+.++|...
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 5666677663 34677777763
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=52.04 E-value=1.4e+02 Score=27.21 Aligned_cols=158 Identities=8% Similarity=0.049 Sum_probs=86.9
Q ss_pred eEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEEe---cC---CCcEEEEEe-CCCeEEEEEccCCcccccccceee
Q 010801 240 RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFH---PI---YCNLLAYSS-SRGFVRLVDMRQSALCDHSARILR 311 (501)
Q Consensus 240 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~---p~---~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~ 311 (501)
.|.+||+.+.. +.++.+.+...... ....+..+++. |. +..+.+.+. ..+.|.++|+.+++.. ++..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 56777887431 55666555432232 24567888888 32 113444444 4788999999998653 3322
Q ss_pred cccccCCCccee--eec----ccceeEEEEeeC----CCEEEEEcCCcEEEEEeeC----CCCceeE--eeccccccccc
Q 010801 312 DAAESHGSKSFF--TEI----IASISDIKFAND----GQHLLSRDYMNLKLWDIRM----DSTPVAT--FKIHEHLRPKL 375 (501)
Q Consensus 312 ~~~~~~~~~~~~--~~h----~~~i~~~~~sp~----~~~l~~~~~~~i~lwd~~~----~~~~~~~--~~~~~~~~~~~ 375 (501)
. ...+.....+ .|. ...+..++++|+ ++.|.-..-..-++|.+.+ +...... ..+......
T Consensus 199 ~-~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s-- 275 (381)
T 3q6k_A 199 P-TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYN-- 275 (381)
T ss_dssp G-GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTC--
T ss_pred C-CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCC--
Confidence 1 2222211111 111 357999999998 7777765434445665543 0111111 111111000
Q ss_pred cccCCCCCcceeeEEEEc-CCCcEEEEEeCCCeEEEEecCC
Q 010801 376 CDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+...++.+ .+|.++++--..+.|..|+..+
T Consensus 276 ----------~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 276 ----------DAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ----------CEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ----------CcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 00356775 6788888888889999999875
No 356
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=49.44 E-value=1.3e+02 Score=26.15 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCCEEEEE-c------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEE
Q 010801 229 DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVD 296 (501)
Q Consensus 229 ~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd 296 (501)
++++++.| . -..+.+||..+ .. ...+.. +........++.+ ++ ++++.|+.+ ..+.+||
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~-W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKK-GD-WKDLAP----MKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTT-TE-EEEECC----CSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCC-CE-EEECCC----CCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEE
Confidence 55566665 3 24588999883 32 222111 1111111122222 45 777877653 3467888
Q ss_pred ccCC
Q 010801 297 MRQS 300 (501)
Q Consensus 297 ~~~~ 300 (501)
+.+.
T Consensus 229 ~~~~ 232 (318)
T 2woz_A 229 LKTN 232 (318)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.33 E-value=65 Score=31.25 Aligned_cols=61 Identities=15% Similarity=-0.022 Sum_probs=36.2
Q ss_pred cceeEEEEeeCCCEEEEEcC-------------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 328 ASISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.....|.|.++|.+.++.+. +.+..++..+ ++....+.+..... .+.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~aE--------------pnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCE--------------VTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTCE--------------EEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCcc--------------ccCCEECC
Confidence 35678999999987774321 1344444432 44433333322111 17999999
Q ss_pred CCcEEEEEe
Q 010801 395 DGLHFATGS 403 (501)
Q Consensus 395 ~~~~l~s~~ 403 (501)
|++.|...-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999877653
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=43.90 E-value=2.6e+02 Score=28.03 Aligned_cols=33 Identities=0% Similarity=-0.180 Sum_probs=23.8
Q ss_pred ceEEEE-EccCCCEEEEEe-----cCCcEEEEEecCCcC
Q 010801 34 IVSAIE-FDKTGDYLAVGD-----RGGRVILFETVGGKN 66 (501)
Q Consensus 34 ~v~~v~-~s~~g~~latg~-----~dg~i~iw~~~~~~~ 66 (501)
....+. ++|++++++.+- .-..|+++|+.+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~ 168 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDF 168 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEE
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCc
Confidence 345556 899999887652 224799999998864
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.43 E-value=94 Score=33.44 Aligned_cols=32 Identities=6% Similarity=-0.072 Sum_probs=27.4
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
.+++..++..++++-+.|+++|||++.+++++
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 45677788899999999999999999998554
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.50 E-value=35 Score=34.07 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcC
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~ 66 (501)
...|.++.+. ..+|++-+.|.++|+|++.++++
T Consensus 221 ~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 221 DSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp CCEEEEEEET--TTEEEEEETTCEEEEEETTTTEE
T ss_pred CceEEEeccC--CcEEEEEEcCCeEEEEEcCCCce
Confidence 4567777664 78999999999999999998864
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.80 E-value=88 Score=30.59 Aligned_cols=59 Identities=15% Similarity=-0.003 Sum_probs=35.1
Q ss_pred ceeEEEEeeCCCEEEEEcCC-------------cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 329 SISDIKFANDGQHLLSRDYM-------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~-------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
..-.|+|+|.|.++++-+.+ .+.+.+..+ ++..+.+.++... .++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECCC
Confidence 35789999999977654311 233334332 4444444443322 1279999999
Q ss_pred CcEEEEE
Q 010801 396 GLHFATG 402 (501)
Q Consensus 396 ~~~l~s~ 402 (501)
++.|+..
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9887765
No 362
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=32.58 E-value=29 Score=21.91 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=28.7
Q ss_pred chhhhhhhccCCCCCCccccccceEEEEEccCCCEEEE
Q 010801 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAV 49 (501)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lat 49 (501)
+.+...++|+... .-.+.|.+.++.+.....|++|.+
T Consensus 26 ~~i~S~~Ll~g~~-~v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 26 RRVNSQALLGPDG-KVIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp CEEEGGGSSTTTC-EEEEEETTEEEEEEEETTTEEEEE
T ss_pred ceEcHHHHhCCCC-EEEEEeCCeEEEeEEccCCceeec
Confidence 4566777777543 345789999999999999998875
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.38 E-value=1.1e+02 Score=29.93 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=36.3
Q ss_pred ceEEEEEecCCCcEEEEEeCC------------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 269 VITSAEFHPIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..-.|+|+|.| ++++.-..+ ..+.+.+..++++. +.+.. + -...++.++|+
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~----rf~~~-P-----------~gaE~TG~~fs 539 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVG-P-----------IGCEVTGISFS 539 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE----EEEEC-C-----------TTCEEEEEEEC
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEE----EEEeC-C-----------CCccCcCeeEC
Confidence 35778999999 766654322 23444444444332 22222 0 13679999999
Q ss_pred eCCCEEEEE
Q 010801 337 NDGQHLLSR 345 (501)
Q Consensus 337 p~~~~l~~~ 345 (501)
||++.|...
T Consensus 540 pDg~tlfvn 548 (592)
T 3zwu_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999877664
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.13 E-value=48 Score=35.69 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=30.0
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeec
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE 154 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~ 154 (501)
.+.+++.. ++..++++-+.|+++|+|++.++++.....
T Consensus 239 ~~vs~~~~--~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEE--TTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeecc--CCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455554 677899999999999999999999877654
No 365
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=26.91 E-value=39 Score=21.56 Aligned_cols=36 Identities=6% Similarity=0.065 Sum_probs=27.6
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEE
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAV 49 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lat 49 (501)
.+...++|+... .-.+.|.+.++.+.....|++|.+
T Consensus 31 ~i~S~~Ll~g~~-ev~I~H~G~~Y~LR~Tr~GKLILT 66 (67)
T 2jra_A 31 QIDSRELFTVDR-EIVIAHGDDRYRLRLTSQNKLILT 66 (67)
T ss_dssp EEEHHHHTTSSS-EEEEEETTEEEEEEECTTSCEEEE
T ss_pred eecHHHHhCCCC-EEEEEeCCeEEEeEEccCCceeec
Confidence 355666777533 345789999999999999999875
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.25 E-value=3.4e+02 Score=26.38 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=36.1
Q ss_pred cceEEEEecCCCCEEEEEcC-------------CeEEEEECCCCCeeeeeeecCCCCCCC-cccceEEEEEecCCCcEEE
Q 010801 219 FNINSISNNSDCETFVSADD-------------LRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~ 284 (501)
.....|.|.++|.+.++.+. +.|..++.. .++...+ +.. ....++.++|+||+ +.|+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-tGel~~f-------l~~P~~aEpnGiafSPD~-ktLf 546 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRF-------MVGPIGCEVTGISFSPDQ-KTLF 546 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT-TCCEEEE-------EECCTTCEEEEEEECTTS-SEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC-CCeEEEE-------EeCCCCccccCCEECCCC-CEEE
Confidence 44568999999988774321 145555554 3333332 111 23568999999999 6665
Q ss_pred EE
Q 010801 285 YS 286 (501)
Q Consensus 285 ~~ 286 (501)
++
T Consensus 547 V~ 548 (592)
T 4a9v_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=20.70 E-value=4.6e+02 Score=23.50 Aligned_cols=70 Identities=10% Similarity=0.000 Sum_probs=34.2
Q ss_pred cceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCC--CCCCC----cccceEEEEEecCCCcEEEEEeCCC
Q 010801 219 FNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDD----LTEVITSAEFHPIYCNLLAYSSSRG 290 (501)
Q Consensus 219 ~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~----~~~~v~~v~~~p~~~~~l~~~~~dg 290 (501)
..+.+|.+.|. ...+..+ .++.|... ...++....+.... ..++. ....+.++.++|..+..|..+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 45778888873 3444444 55544433 22333333221100 00110 0135889999987435666666544
Done!