BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010805
         (500 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QSW|A Chain A, Crystal Structure Analysis Of A Human Lysozyme Mutant W64c
           C65a
 pdb|1QSW|B Chain B, Crystal Structure Analysis Of A Human Lysozyme Mutant W64c
           C65a
 pdb|1QSW|C Chain C, Crystal Structure Analysis Of A Human Lysozyme Mutant W64c
           C65a
 pdb|1QSW|D Chain D, Crystal Structure Analysis Of A Human Lysozyme Mutant W64c
           C65a
          Length = 130

 Score = 29.3 bits (64), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 123 STEHCAKKGKTP------LLSLEALHQLHIFIFVLAVTHVIFCATTMVLAGAKIRQWKHW 176
           ++ +CA  GKTP       LS  AL Q +I          + CA  +V     IR W  W
Sbjct: 60  NSRYCANDGKTPGAVNACHLSCSALLQDNI-------ADAVACAKRVVRDPQGIRAWVAW 112

Query: 177 EDSVRNQ 183
            +  +N+
Sbjct: 113 RNRCQNR 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,976,462
Number of Sequences: 62578
Number of extensions: 480242
Number of successful extensions: 1433
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 1
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)