Query 010805
Match_columns 500
No_of_seqs 142 out of 247
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 23.7 17 0.0013 25.6 1.8 18 351-368 29-46 (51)
2 d1zkea1 a.30.6.1 (A:1-79) Hypo 10.0 44 0.0032 25.5 1.1 15 50-64 63-77 (79)
3 d1xrda1 f.3.1.1 (A:1-52) Light 9.5 68 0.0049 22.8 1.9 15 140-154 13-27 (52)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 7.8 2.4E+02 0.017 23.0 5.2 26 16-41 155-180 (319)
5 d1ug0a_ a.217.1.1 (A:) Splicin 7.7 41 0.003 25.8 0.0 54 312-378 25-80 (88)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 6.4 1.4E+02 0.01 19.5 2.2 13 146-158 22-34 (37)
7 d1j1va_ a.4.12.2 (A:) Chromoso 6.3 1.8E+02 0.013 21.7 3.4 30 34-63 46-75 (94)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 6.0 3.1E+02 0.023 20.2 4.7 35 24-58 8-42 (158)
9 d1unda_ a.14.1.1 (A:) Advillin 5.9 32 0.0023 22.8 -1.3 12 265-276 4-15 (36)
10 d1yu8x1 a.14.1.1 (X:42-76) Vil 5.9 32 0.0023 22.6 -1.3 12 265-276 3-14 (35)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.69 E-value=17 Score=25.62 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 010805 351 AIVLNLIHFILFQNSFEI 368 (500)
Q Consensus 351 ~llL~LIhfiLFQNAFel 368 (500)
.++|.|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 2
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=10.01 E-value=44 Score=25.49 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHH
Q 010805 50 DALFEALQKLKEELM 64 (500)
Q Consensus 50 kaL~eALeKiK~ELM 64 (500)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678999999999974
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.47 E-value=68 Score=22.82 Aligned_cols=15 Identities=53% Similarity=0.735 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHH
Q 010805 140 ALHQLHIFIFVLAVT 154 (500)
Q Consensus 140 ~lhQLHIFIFvLAv~ 154 (500)
.+--+|.|+|+||+.
T Consensus 13 ~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 13 ALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344578999999975
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.78 E-value=2.4e+02 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh
Q 010805 16 TWVVAVVCFVIVLISFCAERGLHGLG 41 (500)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lg 41 (500)
.|.++.++.+.+.+.+++-....+-.
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHHhhhhHH
Confidence 36677777777777766655444433
No 5
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.71 E-value=41 Score=25.80 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhhCccccCCccCcc-cCCCCCccccccchHHHHHHHHHHh-hhhhHHHHHHHHhhcc
Q 010805 312 AKLEHIITRLAQDVDPKRRQGQDAGR-VKPSDEYFWFQRPAIVLNLIHFILF-QNSFEIAFVVWIWCTY 378 (500)
Q Consensus 312 tKLq~II~~la~ei~e~~~~v~g~p~-v~p~D~lFWF~rP~llL~LIhfiLF-QNAFelAfF~W~~~~f 378 (500)
.++..||.++|.=+++.+...+-... =+.+|..||| |+ ++.=.-.|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~F-------------L~d~~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTF-------------LHDKNSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHH-------------HHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCcee-------------eCCCCCCCcHHHHHHHHHH
Confidence 37889999999988876555443321 1357888999 34 3444456777777665
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.41 E-value=1.4e+02 Score=19.54 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 010805 146 IFIFVLAVTHVIF 158 (500)
Q Consensus 146 IFIFvLAv~HV~y 158 (500)
.+||||||..-.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999876655
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=6.31 E-value=1.8e+02 Score=21.72 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhcCchHHHHHHHHHHHHH
Q 010805 34 ERGLHGLGKFLKKNKQDALFEALQKLKEEL 63 (500)
Q Consensus 34 Er~lH~lgk~lkk~~kkaL~eALeKiK~EL 63 (500)
...+-.+|+.|..+.-.+..+|..|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 345778899997666688999999988764
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.03 E-value=3.1e+02 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHH
Q 010805 24 FVIVLISFCAERGLHGLGKFLKKNKQDALFEALQK 58 (500)
Q Consensus 24 ~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeK 58 (500)
.|+++|+++.==++=.+..+.++.+++.....+.-
T Consensus 8 VViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~ 42 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTARAQVSEAILLAEG 42 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666667666555444443333
No 9
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.87 E-value=32 Score=22.78 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=9.4
Q ss_pred hhcccceeeech
Q 010805 265 EWDFRKVVGIRW 276 (500)
Q Consensus 265 E~DFk~VVGIS~ 276 (500)
++||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 10
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.86 E-value=32 Score=22.64 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.0
Q ss_pred hhcccceeeech
Q 010805 265 EWDFRKVVGIRW 276 (500)
Q Consensus 265 E~DFk~VVGIS~ 276 (500)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888775
Done!