BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010807
(500 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/434 (73%), Positives = 363/434 (83%), Gaps = 1/434 (0%)
Query: 52 RTRPRTGICCVWTRPRSKRG-RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSE 110
R RT I C R K R+S E E++ LVR LM SD+EPLV+TL+KYVKVVR +
Sbjct: 39 RRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCD 98
Query: 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSE
Sbjct: 99 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSE 158
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
M+NSGCRPD SVYNALITAHLHTRDKAKAL K GY KMKG+ERC+PN+VTYNILLRA
Sbjct: 159 MKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAF 218
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
AQ+ VDQVNALFK+L S ++PD+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDI
Sbjct: 219 AQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDI 278
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
ITFN+LIDSYGK+Q F+KMEQ FKSLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+K
Sbjct: 279 ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKK 338
Query: 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
M M Y PSFITYEC+I MYGYC +VSRAREIF+E+ + + +K STLNAMLE YC NGL
Sbjct: 339 MNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470
EAD LF N+ V PD+STYK LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLE
Sbjct: 399 YIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 471 ALETFSSSLAGSQS 484
ALE F S L GS S
Sbjct: 459 ALEVFGSRLPGSGS 472
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 5/353 (1%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+WLQ LEVF +++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y
Sbjct: 103 QWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELY 162
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
AL+ A+ ++ + A KMK +C+P++ TY+ LL+AC A D V++L+
Sbjct: 163 TALLAAYT----RSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLY 218
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGK 302
KE+ E ++ P+ T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G
Sbjct: 219 KEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGN 278
Query: 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362
D ME ++ + +P TFN +I +YGK R+ K V + M +++ + T
Sbjct: 279 MGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTST 338
Query: 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422
Y II + + FD++ G T ++ Y GL + + +
Sbjct: 339 YNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAA 398
Query: 423 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+ +++ Y + A KA+ ++++ RM++ V + R F +E +
Sbjct: 399 KFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 120/296 (40%), Gaps = 37/296 (12%)
Query: 187 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 246
+T L K +AL F ++ +P TY LL ++ ++ LF E+
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 247 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF------------ 293
E L P + Y ++ AY ++ +I + S+L +MKS QC+PD+ T+
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQ 210
Query: 294 -----------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 329
N+++ YG+ FD+ME+V ++ S KP + T N
Sbjct: 211 FDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMN 270
Query: 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389
++ +G E ++K P T+ +I YG + + + + KL
Sbjct: 271 IILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKL 330
Query: 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
ST N ++EA+ G +L F+ + G+ D+ T+ L Y A +
Sbjct: 331 EFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGL 386
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 47/218 (21%)
Query: 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 210
+++V G G+ + + + RN G P+ +N LI ++ R K ++ + Y +K+
Sbjct: 272 ILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDK-MSSVMEYMRKL 330
Query: 211 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT------------- 257
+ TYN ++ A A + + F ++ + D T
Sbjct: 331 E----FPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGL 386
Query: 258 ----------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 295
YN V+ A K + EME V RMK QC D TF +
Sbjct: 387 FHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEI 446
Query: 296 LIDSYGKRQAFDK---MEQVFKSLMH----SKEKPTLP 326
++++Y K DK +EQ + LM +KE LP
Sbjct: 447 MVEAYEKEGMNDKIYYLEQERQKLMDRTVATKEMENLP 484
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 179/363 (49%), Gaps = 5/363 (1%)
Query: 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG 175
+E K ++W L++F ++KQ WY Y+KL V+G Q A LF M + G
Sbjct: 65 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124
Query: 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 235
+P VY +LI+ + K++ L KA + MK + CKP++ T+ +L+ C +
Sbjct: 125 LKPTIDVYTSLISVY----GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGR 180
Query: 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFN 294
D V ++ E+ + TYN ++D YGK GM +EMESVL+ M + PD+ T N
Sbjct: 181 FDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLN 240
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+I SYG + KME + +P + TFN +I+++GKA + K V M
Sbjct: 241 SIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKR 300
Query: 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
++ + +TY +I +G + + ++F ++ G T +++ AY GL +
Sbjct: 301 FFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKI 360
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 474
D + N V D+ + + AY +A +++L +ME+ P+K F ++T
Sbjct: 361 DSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKT 420
Query: 475 FSS 477
+++
Sbjct: 421 YTA 423
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 2/278 (0%)
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
AL F ++ +P TY L + + DQ + LF+ + L P I Y ++
Sbjct: 77 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLI 136
Query: 263 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
YGK+ ++ + S L MKS + CKPD+ TF +LI K FD ++ + + +
Sbjct: 137 SVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 196
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAR 380
+ T+N++I YGKA + + E V M + P T II YG N+ +
Sbjct: 197 GCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKME 256
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+ +G ++T N ++ ++ G+ + + + + + TY ++ + +
Sbjct: 257 SWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETF 316
Query: 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
KA E + + ++M+ G+ PN + + +S +
Sbjct: 317 GKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKA 354
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 13/250 (5%)
Query: 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKA 203
T Y+ +I GK G + ++M G PD N++I ++ + R+ K +
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRK-MESW 258
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
FQ M +P+I T+NIL+ + +A ++ ++ + + + TYN V++
Sbjct: 259 YSRFQLMG----VQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIE 314
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+GK G I++M+ V +MK KP+ IT+ L+++Y K K++ V + +++S
Sbjct: 315 TFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVL 374
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
P FN +I YG+A + ++ +M K P IT+ +I Y A IF
Sbjct: 375 DTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY-------TAHGIF 427
Query: 384 DELSKLGKDM 393
D + +L K M
Sbjct: 428 DAVQELEKQM 437
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D ++ LI GK G + + M YN +I T KA + K
Sbjct: 270 DITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVI----ETFGKAGRIEKM 325
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
F+KMK + KPN +TY L+ A ++A V +++++ +++ S + D +N +++
Sbjct: 326 DDVFRKMK-YQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIIN 384
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
AYG+ G + M+ + +M+ +CKPD ITF +I +Y FD ++++ K ++ S E
Sbjct: 385 AYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGE 442
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L GK+ + + V +M+K R++ T Y+ +I GK G+ +F +M+
Sbjct: 276 ILILSFGKAGMYKKMCSVMDFMEK-RFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKY 334
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G +P+ Y +L+ A+ KA + K +++ + + +N ++ A QA
Sbjct: 335 QGVKPNSITYCSLVNAY----SKAGLVVKIDSVLRQIVNSDVV-LDTPFFNCIINAYGQA 389
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291
++ + L+ ++ E PD T+ ++ Y +G+ ++ + +M S+ DI+
Sbjct: 390 GDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGENLDIL 447
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 200/411 (48%), Gaps = 9/411 (2%)
Query: 69 KRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQC 128
++G+ S ++ES L+ L S + + R L+ + + L+F+E W +
Sbjct: 68 EKGKYSYDVES--LINKL-SSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRS 124
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L +F++MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI
Sbjct: 125 LRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALIN 184
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELH 247
A+ + +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+
Sbjct: 185 AY----GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239
Query: 248 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 307
+ PDI TYN ++ A G+ E E V M PD+ T++ L++++GK + +
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299
Query: 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367
K+ + + P + ++N ++ Y K+ +A VF +M A TP+ TY ++
Sbjct: 300 KVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLL 359
Query: 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427
++G R++F E+ D +T N ++E + G E LF + +
Sbjct: 360 NLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIE 419
Query: 428 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
PD TY+ + A K + E +K+L+ M N IVP+ + + +E F +
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 162/352 (46%), Gaps = 6/352 (1%)
Query: 125 WLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184
W L +F M + D Y+ L++ +G A +F M + G PD + Y+
Sbjct: 228 WEGLLGLFAEM-RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 244
L+ T K + L K +M P+I +YN+LL A A++ ++ + +F
Sbjct: 287 HLV----ETFGKLRRLEKVCDLLGEMASGGSL-PDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 245 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 304
++ + P+ TY+ +++ +G++G ++ + MKS+ PD T+N+LI+ +G+
Sbjct: 342 QMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGG 401
Query: 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 364
F ++ +F ++ +P + T+ +I GK L A + Q MTA PS Y
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461
Query: 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424
+I +G A F+ + ++G + + T +++L ++ GL E++ + +
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521
Query: 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 476
G+ + T+ +AY + E K ME++ P++R L +S
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 6/333 (1%)
Query: 131 VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190
VFR M + D YS L+ GK + L EM + G PD + YN L+ A+
Sbjct: 269 VFRTMNDGG-IVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAY 327
Query: 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250
K+ ++ +A+G F +M+ C PN TY++LL Q+ D V LF E+ S
Sbjct: 328 A----KSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 251 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310
PD TYN +++ +G+ G KE+ ++ M +PD+ T+ +I + GK +
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 370
++ + + + P+ + +I +G+A L +A F M + PS T+ ++ +
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSF 502
Query: 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430
V + I L G T NA +EAY G EA + + PD
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562
Query: 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
T + + Y+ A + + ++ + M+ + I+P
Sbjct: 563 RTLEAVLSVYSFARLVDECREQFEEMKASDILP 595
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 162/376 (43%), Gaps = 11/376 (2%)
Query: 87 MRSFSDKEPLV-RTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADT 145
+R D+ +V RT+N V L E GK + + ++ M + D
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGG-SLPDI 317
Query: 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKA 203
Y+ L+ K G + AM +F +M+ +GC P+ + Y+ L+ + D + L
Sbjct: 318 TSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL--- 374
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
F +MK P+ TYNIL+ + +V LF ++ E + PD+ TY G++
Sbjct: 375 ---FLEMKS-SNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
A GK G+ ++ +L M +N P + +I+++G+ +++ F ++ P
Sbjct: 431 ACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
++ TF+S++ ++ + L ++E + ++ + T+ I Y A + +
Sbjct: 491 SIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTY 550
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
++ K D TL A+L Y L E FE + P Y ++ Y K
Sbjct: 551 VDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKT 610
Query: 444 NMKELVQKLLKRMEQN 459
+ V +LL+ M N
Sbjct: 611 ERWDDVNELLEEMLSN 626
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 143/352 (40%), Gaps = 42/352 (11%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L G+S ++ ++F M+ D Y+ LI V G+ G + + LF +M
Sbjct: 357 VLLNLFGQSGRYDDVRQLFLEMKSSN-TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
PD Y +I A K A Q M + P+ Y ++ A QA
Sbjct: 416 ENIEPDMETYEGIIFAC----GKGGLHEDARKILQYMTAND-IVPSSKAYTGVIEAFGQA 470
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
++ F +HE P I T++ ++ ++ + G++KE E++LSR+ + + TF
Sbjct: 471 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N I++Y + F++ + + + S+ P T +++ Y ARL + F++M A
Sbjct: 531 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 590
Query: 354 MKYTPSFITYECIITMYGYC---DNVSRARE----------------------------- 381
PS + Y ++ +YG D+V+ E
Sbjct: 591 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 650
Query: 382 ----IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429
+ D+L+ G + + NA+L+A G A + + G+ P+
Sbjct: 651 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE 702
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 173/373 (46%), Gaps = 40/373 (10%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+W ++VF +++Q WY + GIY KLI ++GK Q A LF EM N GC + VY
Sbjct: 129 RWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVY 188
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
AL++A+ ++ A ++MK C+P++ TY+IL+++ Q D+V L
Sbjct: 189 TALVSAY----SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLL 244
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------- 289
++ + P+ TYN ++DAYGK M EMES L +M + CKPD
Sbjct: 245 SDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGG 304
Query: 290 ----------------------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
I TFN+L+DSYGK + KM V + + T+ T
Sbjct: 305 NGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVT 364
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+N +I +G+A + EY+F+ M + + PS +T ++ YG + + +
Sbjct: 365 YNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIE 424
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
+ + N +++AY E + E G PD TY+ + KAY + M
Sbjct: 425 NSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTT 484
Query: 448 LVQKLLKRMEQNG 460
V++L +E G
Sbjct: 485 HVKELHGVVESVG 497
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 31/256 (12%)
Query: 167 LFSEMRNSGCRPDPSVYNALITAH---------------LHTRDKAK-------ALAKAL 204
L S+MR G RP+ YN LI A+ + D K + +A
Sbjct: 243 LLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAF 302
Query: 205 GYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 255
G +++ ME C +PNI T+NILL + ++ N +++A+ + + + + I
Sbjct: 303 GGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTI 362
Query: 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315
TYN V+DA+G+ G +K+ME + M+S + P +T L+ +YG+ DK+ V +
Sbjct: 363 VTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRF 422
Query: 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375
+ +S + L FN ++ YG+ + + V + M + P ITY ++ Y
Sbjct: 423 IENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGM 482
Query: 376 VSRAREIFDELSKLGK 391
+ +E+ + +G+
Sbjct: 483 TTHVKELHGVVESVGE 498
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346
KP++ + LI GK + +K ++F+ +++ + +++ Y ++ G+ +
Sbjct: 147 KPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRS---GRFDA 203
Query: 347 VFQKMTAMKYT----PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402
F + MK + P TY +I + + +++ ++ + G T N ++
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 263
Query: 403 EAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
+AY + E + L + PDS T +A+ E+++ ++ + +GI
Sbjct: 264 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 323
Query: 462 VPNKRFFLEALETFSSS 478
PN R F L+++ S
Sbjct: 324 EPNIRTFNILLDSYGKS 340
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 223/507 (43%), Gaps = 36/507 (7%)
Query: 3 LTNLSPYSLRLSTLSSSSASSSSSSSSSSFNQ--SSSQNYNFTHRHIPLSLRTRPRTGIC 60
+ ++ + L SS + ++ +S +F + S S NY+ + +++ + I
Sbjct: 1 MATVTNFKLVTPPESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADIP 60
Query: 61 CVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELG 120
+ R R + R ++ E+V LM + + E + LN +V ++ +L EL
Sbjct: 61 RRY-RIRVENDRFQKDWSVSEVVDRLM-ALNRWEEVDGVLNSWVGRFARKNFPVLIRELS 118
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
+ C+ VF+WM+ Q+ Y A IY+ +I + + A LF EM+ C+PD
Sbjct: 119 RRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDA 178
Query: 181 SVYNALITAH---------------------LHTRDKAKALAKALGYFQKMK-GMERCK- 217
Y+ALI AH +R L A G + +E CK
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKK 238
Query: 218 -------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270
P++VT+NI+L A R + + F+ + + + PD T+N ++ K G
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQ 298
Query: 271 IKEMESVLSRM--KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
+ + + M K +C+PD++TF ++ Y + + VF++++ KP + ++
Sbjct: 299 SSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 358
Query: 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388
N+++ Y + G A V + P ++Y C++ YG +A+E+F + K
Sbjct: 359 NALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRK 418
Query: 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448
+ V T NA+++AY NG EA +F G+ P+ + L A +++ K
Sbjct: 419 ERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVN 478
Query: 449 VQKLLKRMEQNGIVPNKRFFLEALETF 475
V +L + GI N + A+ ++
Sbjct: 479 VDTVLSAAQSRGINLNTAAYNSAIGSY 505
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 50/362 (13%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 201
DT ++ +I + K GQ+ A+ LF+ MR + CRPD + +++ HL++
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 339
Query: 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261
+A+ F+ M E KPNIV+YN L+ A A ++ ++ ++ + PD+ +Y +
Sbjct: 340 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396
Query: 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 311
+++YG++ + + V M+ + KP+++T+N LID+YG + F +MEQ
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 456
Query: 312 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 346
+ + SK+K + T +NS I +Y A KA
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516
Query: 347 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402
++Q M K +T+ +I+ M Y + +S +E+ D L K++ S L
Sbjct: 517 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 573
Query: 403 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 462
AY G TEA+ +F G PD Y + AY + +L ME NGI
Sbjct: 574 -AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632
Query: 463 PN 464
P+
Sbjct: 633 PD 634
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 5/283 (1%)
Query: 137 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196
KQ I D Y+ L+ G+ Q A +F MR +P+ YNALI A+
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GS 437
Query: 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256
LA+A+ F++M+ + KPN+V+ LL AC++++ V+ + + +
Sbjct: 438 NGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
YN + +Y +++ ++ M+ + K D +TF +LI + + + K +
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEM 556
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376
T ++S++ Y K +AE +F +M P I Y ++ Y +
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKW 616
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419
+A E+F E+ G + +A++ A+ G P+ +L +
Sbjct: 617 GKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 168/373 (45%), Gaps = 12/373 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
++ LGK + +F +Q+ + + D Y+ LI+ G+ R A+ +F +M
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSL-DVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
GC+P YN ++ K +KMK + P+ TYN L+ C +
Sbjct: 237 DGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRG 292
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ +F+E+ + + D TYN ++D YGK+ KE VL+ M N P I+T+
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N LI +Y + D+ ++ + KP + T+ +++ + +A A +F++M
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
P+ T+ I MYG + +IFDE++ G + T N +L + NG+ +E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
+F+ G P+ T+ L AY++ E + +RM G+ P+ L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD-------LS 525
Query: 474 TFSSSLAGSQSGS 486
T+++ LA G
Sbjct: 526 TYNTVLAALARGG 538
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 69/389 (17%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y+ L++ + G+ AM +F EMRN+GC+P+ +NA I + R K + K
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY-GNRGKFTEMMKI 441
Query: 204 L--------------------------------GYFQKMKGMERCKPNIVTYNILLRACA 231
G F++MK P T+N L+ A +
Sbjct: 442 FDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYS 500
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291
+ + +Q +++ + ++ + PD+ TYN V+ A + GM ++ E VL+ M+ +CKP+ +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 292 TFNLLIDSYGKRQAFDKM-----------------------------------EQVFKSL 316
T+ L+ +Y + M E+ F L
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376
P + T NSM+ YG+ ++ KA V M +TPS TY ++ M+ +
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436
++ EI E+ G + + N ++ AYC N +A +F N G+ PD TY
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740
Query: 437 YKAYTKANMKELVQKLLKRMEQNGIVPNK 465
+Y +M E +++ M ++G PN+
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 154/329 (46%), Gaps = 6/329 (1%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y+ LI + + A +F EM+ +G D YNAL+ + K+ +A
Sbjct: 278 DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY----GKSHRPKEA 333
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ +M + P+IVTYN L+ A A+ +D+ L ++ E PD++TY ++
Sbjct: 334 MKVLNEMV-LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+ + G ++ S+ M++ CKP+I TFN I YG R F +M ++F + P
Sbjct: 393 GFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 452
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
+ T+N+++ +G+ + + VF++M + P T+ +I+ Y C + +A ++
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
+ G +ST N +L A G+ +++ + + P+ TY L AY
Sbjct: 513 RRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG 572
Query: 444 NMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
L+ L + + +G++ + L+ L
Sbjct: 573 KEIGLMHSLAEEV-YSGVIEPRAVLLKTL 600
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 20/324 (6%)
Query: 131 VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190
VF+ M K+ ++ + ++ LI+ + G AM ++ M ++G PD S YN ++ A
Sbjct: 476 VFKEM-KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA- 533
Query: 191 LHTRDKAKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKE 245
LA+ + Q K + RCKPN +TY LL A A + + +++L +E
Sbjct: 534 ---------LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEE 584
Query: 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
++ ++ P ++ K ++ E E S +K PDI T N ++ YG+RQ
Sbjct: 585 VYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
K V + P++ T+NS++ + ++ GK+E + +++ A P I+Y
Sbjct: 645 VAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNT 704
Query: 366 IITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
+I Y YC N + A IF E+ G V T N + +Y + + EA +
Sbjct: 705 VI--YAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 424 MGVTPDSSTYKLLYKAYTKANMKE 447
G P+ +TY + Y K N K+
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKD 786
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 78/406 (19%)
Query: 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAVMGKKGQTRLAMW 166
S + LG K+ L F W KQ+ Y + D + + +I+++GK+G+ A
Sbjct: 135 SSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAAN 194
Query: 167 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226
+F+ ++ G D Y +LI+A ++
Sbjct: 195 MFNGLQEDGFSLDVYSYTSLISAFANS--------------------------------- 221
Query: 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQ 285
R + VN +FK++ E P + TYN +++ +GK G ++ S++ +MKS+
Sbjct: 222 ------GRYREAVN-VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDG 274
Query: 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345
PD T+N LI + + QVF+ + + T+N+++ YGK+ +A
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 346 YVFQKMTAMKYTPSFITYECIITMY---GYCDN--------------------------- 375
V +M ++PS +TY +I+ Y G D
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 376 -----VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430
V A IF+E+ G + T NA ++ Y G TE +F+ + G++PD
Sbjct: 395 ERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDI 454
Query: 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 476
T+ L + + M V + K M++ G VP + F + +S
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 182/405 (44%), Gaps = 46/405 (11%)
Query: 102 KYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQT 161
+ V++ +++CF++ + +G+ + W + LEVF W+ + W+ + + + ++ V+G+ Q
Sbjct: 150 RLVQMTPTDYCFVV-KSVGQ-ESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQE 207
Query: 162 RLAMWLFSE----------------------------------MRNSGCRPDPSVYNALI 187
LA+ +F+ MR GC PD +N LI
Sbjct: 208 SLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI 267
Query: 188 TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 247
A L + LA L + G+ +P+ +TYN LL AC++ N+D +F+++
Sbjct: 268 NARLKSGGLTPNLAVELLDMVRNSGL---RPDAITYNTLLSACSRDSNLDGAVKVFEDME 324
Query: 248 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 307
PD++TYN ++ YG+ G+ E E + ++ PD +T+N L+ ++ + + +
Sbjct: 325 AHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTE 384
Query: 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITY 363
K+++V++ + T+N++I YGK QG+ + Q MK P ITY
Sbjct: 385 KVKEVYQQMQKMGFGKDEMTYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITY 441
Query: 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
+I G + A + E+ +G + T +A++ Y G EA+ F
Sbjct: 442 TVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLR 501
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
G PD+ Y ++ + N L + M +G P+ +
Sbjct: 502 SGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLY 546
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 163/348 (46%), Gaps = 8/348 (2%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+ E GK W + V + +Q D ++ L++ + G A +F+ M
Sbjct: 758 IIEAYGKQKLWQKAESVVGNL-RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD 816
Query: 175 GCRPDPSVYNALITAH-LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G P P+V + I H L + + L + Q M G + K +I+ ++L A A+A
Sbjct: 817 G--PSPTVESINILLHALCVDGRLEELYVVVEELQDM-GFKISKSSIL---LMLDAFARA 870
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
N+ +V ++ + + P I Y +++ K +++ E ++S M+ K ++ +
Sbjct: 871 GNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N ++ Y + + K QV++ + + +P T+N++II Y + R + + Q+M
Sbjct: 931 NSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRN 990
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
+ P TY+ +I+ +G + +A ++F+EL G + S + M++ +G ++
Sbjct: 991 LGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSK 1050
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
A+ L + N G+ P +T LL +Y+ + + +K+L ++ +
Sbjct: 1051 AEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEV 1098
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 146/334 (43%), Gaps = 5/334 (1%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
+V + + ++ A + +Y+ +I GK+ + A + +R SG PD +N+L++A
Sbjct: 737 QVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSA 796
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
+ + +A F M + P + + NILL A ++++ + +EL +
Sbjct: 797 YA----QCGCYERARAIFNTMM-RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDM 851
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309
+ ++DA+ + G I E++ + S MK+ P I + ++I+ K +
Sbjct: 852 GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDA 911
Query: 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369
E + + + K L +NSM+ Y K V+Q++ P TY +I M
Sbjct: 912 EIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429
Y + ++ LG D K+ T +++ A+ +A+ LFE + G+ D
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
S Y + K + +KLL+ M+ GI P
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEP 1065
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/361 (19%), Positives = 151/361 (41%), Gaps = 33/361 (9%)
Query: 140 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TA 189
W + +Y L+ A +FS++R SGC SV +++ TA
Sbjct: 676 WCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETA 735
Query: 190 H----------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 227
H + K K KA ++ R P++ T+N L+
Sbjct: 736 HQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLM 794
Query: 228 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 287
A AQ ++ A+F + +P + + N ++ A +G ++E+ V+ ++ K
Sbjct: 795 SAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFK 854
Query: 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347
+ L++D++ + ++++++ S+ + PT+ + MI K + AE +
Sbjct: 855 ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIM 914
Query: 348 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407
+M + + ++ MY ++ + +++ + + G + +T N ++ YC
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974
Query: 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 467
+ P E LL + N+G+ P TYK L A+ K E ++L + + G+ ++ F
Sbjct: 975 DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSF 1034
Query: 468 F 468
+
Sbjct: 1035 Y 1035
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 139/323 (43%), Gaps = 38/323 (11%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
++VF M+ R D Y+ +I+V G+ G A LF E+ G PD YN+L+
Sbjct: 317 VKVFEDMEAHRCQ-PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLY 375
Query: 189 AH-------------------------------LHTRDKAKALAKALGYFQKMKGMERCK 217
A +H K L AL ++ MKG+
Sbjct: 376 AFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRN 435
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+ +TY +L+ + +A + AL E+ + + P + TY+ ++ Y K G +E E
Sbjct: 436 PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDT 495
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
S M + KPD + +++++D + K +++ ++ P+ + MI+ K
Sbjct: 496 FSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMK 555
Query: 338 ARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 396
+ + M + P I+ + + G C +++ AR++ ++ G +++
Sbjct: 556 ENRSDDIQKTIRDMEELCGMNPLEISS---VLVKGECFDLA-ARQLKVAITN-GYELEND 610
Query: 397 TLNAMLEAYCMNGLPTEADLLFE 419
TL ++L +Y +G +EA L E
Sbjct: 611 TLLSILGSYSSSGRHSEAFELLE 633
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 134/316 (42%), Gaps = 7/316 (2%)
Query: 167 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226
++S M+ +G P +Y +I K K + A +M+ K + +N +
Sbjct: 879 IYSSMKAAGYLPTIRLYRMMIELLC----KGKRVRDAEIMVSEMEEA-NFKVELAIWNSM 933
Query: 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 286
L+ + + +++ + E+ L PD TYN ++ Y ++ +E ++ +M++
Sbjct: 934 LKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993
Query: 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346
P + T+ LI ++GK++ ++ EQ+F+ L+ K +++M+ + KAE
Sbjct: 994 DPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEK 1053
Query: 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406
+ Q M P+ T ++ Y N A ++ L ++ +++++AY
Sbjct: 1054 LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYL 1113
Query: 407 MN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465
+ + + L E G+ PD + +A + + K V LLK +E G
Sbjct: 1114 RSKDYNSGIERLLEMKKE-GLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPI 1172
Query: 466 RFFLEALETFSSSLAG 481
R E S + G
Sbjct: 1173 RLLAGRPELLVSEVDG 1188
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/405 (20%), Positives = 157/405 (38%), Gaps = 76/405 (18%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALIT 188
EV++ MQK + D Y+ +I + GK+GQ LA+ L+ +M+ SG PD Y LI
Sbjct: 388 EVYQQMQKMG-FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLI- 445
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
+ KA +A +M + KP + TY+ L+ A+A ++ F +
Sbjct: 446 ---DSLGKANRTVEAAALMSEMLDV-GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLR 501
Query: 249 SILAPDIYTYNGVMDAYGKN-------GMIKEMES-------------VLSRMKSNQCKP 288
S PD Y+ ++D + G+ ++M S +L MK N+
Sbjct: 502 SGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDD 561
Query: 289 DIITFNLLIDSYG-----------KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
T + + G K + FD + K + + + T S++ +Y
Sbjct: 562 IQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSS 621
Query: 338 ARLQGKA----EYVFQKMTAMK--YTPSFITYECIIT--------------MYGYC---- 373
+ +A E++ + + K T + I C + ++G+C
Sbjct: 622 SGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSS 681
Query: 374 -------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420
++ + A ++F +L G + S +M+ YC G P A +
Sbjct: 682 TMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQ 741
Query: 421 SHNMGVT-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ G S Y + +AY K + + + ++ + Q+G P+
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPD 786
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 163/341 (47%), Gaps = 16/341 (4%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L++ R M+ +R AD YS +I + + G A+ LF EM G + YN+L+
Sbjct: 213 LDLLRKME-ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
KA + M E PN++T+N+LL + + + N L+KE+
Sbjct: 272 GLC----KAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326
Query: 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308
++P+I TYN +MD Y + E ++L M N+C PDI+TF LI Y + D
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386
Query: 309 MEQVFKSLMHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
+VF+++ T++ ++ + GK +L AE +FQ+M + P +TY
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG- 442
Query: 366 IITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
I + G CDN + +A EIF++L K D+ + ++E C G +A LF +
Sbjct: 443 -ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
GV P+ TY ++ K LL++ME++G PN
Sbjct: 502 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)
Query: 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 219
+T A + ++ G PD + +N LI L K +++A+ +M C+P+
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKG-LFLEGK---VSEAVVLVDRMVE-NGCQPD 192
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+VTYN ++ ++ + L +++ E + D++TY+ ++D+ ++G I S+
Sbjct: 193 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
M++ K ++T+N L+ K ++ + K ++ + P + TFN ++ + K
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 397
+A ++++M +P+ ITY + M GYC + +S A + D + + + T
Sbjct: 313 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
++++ YCM + +F N G+ ++ TY +L + + ++ +L ++L + M
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 458 QNGIVPN 464
+G++P+
Sbjct: 431 SHGVLPD 437
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 143/331 (43%), Gaps = 5/331 (1%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
+S+ + + + Q L + ++ +G + N +I A + LG
Sbjct: 91 FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS-VLGKV 149
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
K+ G E P+ T+N L++ V + L + E+ PD+ TYN +++ +
Sbjct: 150 MKL-GYE---PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
+G +L +M+ K D+ T++ +IDS + D +FK + K ++ T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+NS++ KA + + M + + P+ IT+ ++ ++ + A E++ E+
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
G + T N +++ YCM +EA+ + + +PD T+ L K Y +
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385
Query: 448 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
K+ + + + G+V N + ++ F S
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 149/325 (45%), Gaps = 12/325 (3%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L L K+ KW + + M R + + ++ L+ V K+G+ + A L+ EM
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMV-SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327
Query: 175 GCRPDPSVYNALITAH-LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G P+ YN L+ + + R L++A M +C P+IVT+ L++
Sbjct: 328 GISPNIITYNTLMDGYCMQNR-----LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMV 381
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ VD +F+ + + L + TY+ ++ + ++G IK E + M S+ PD++T+
Sbjct: 382 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 441
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
+L+D +K ++F+ L SK + + ++I K A +F +
Sbjct: 442 GILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501
Query: 354 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411
P+ +TY +I+ G C ++S A + ++ + G T N ++ A+ +G
Sbjct: 502 KGVKPNVMTYTVMIS--GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559
Query: 412 TEADLLFENSHNMGVTPDSSTYKLL 436
T + L E + G + D+S+ K++
Sbjct: 560 TASAKLIEEMKSCGFSADASSIKMV 584
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI--YSKLIAVMGKKGQTRLAMWLFSEM 171
+L + L + K + LE+F +QK + D GI Y+ +I M K G+ A LF +
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKM---DLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499
Query: 172 RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231
G +P+ Y +I+ K +L++A +KM+ + PN TYN L+RA
Sbjct: 500 PCKGVKPNVMTYTVMISGLC----KKGSLSEANILLRKMEE-DGNAPNDCTYNTLIRAHL 554
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ ++ L +E+ + D + V+D
Sbjct: 555 RDGDLTASAKLIEEMKSCGFSADASSIKMVID 586
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 172/355 (48%), Gaps = 16/355 (4%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+ L KS L++FR M+ +R A YS +I + K G A+ LF+EM
Sbjct: 216 VLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 175 GCRPDPSVYNALITAHLHT---RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231
G + D Y++LI + D AK L + +G P++VT++ L+
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG--------RNIIPDVVTFSALIDVFV 326
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291
+ + + L+ E+ +APD TYN ++D + K + E + M S C+PDI+
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351
T+++LI+SY K + D ++F+ + P T+N++++ + ++ A+ +FQ+M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 352 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
+ PS +TY I + G CDN +++A EIF+++ K + + N ++ C
Sbjct: 447 VSRGVPPSVVTYG--ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+A LF + + GV PD TY ++ K L ++M+++G P+
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 141/330 (42%), Gaps = 49/330 (14%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L L KW ++ R M R I D +S LI V K+G+ A L++EM
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 344
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQ 232
G PD YN+LI K L +A F M KG C+P+IVTY+IL+ + +
Sbjct: 345 GIAPDTITYNSLIDGFC----KENCLHEANQMFDLMVSKG---CEPDIVTYSILINSYCK 397
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
A+ VD LF+E+ L P+ TYN ++ + ++G + + + M S P ++T
Sbjct: 398 AKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
+ +L+D +K ++F+ + S+ + +N
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN----------------------- 494
Query: 353 AMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
I ++G C+ V A +F LS G V T N M+ C G
Sbjct: 495 --------------IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+EAD+LF G TPD TY +L +A+
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 10/291 (3%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K K L+ E++ M R DT Y+ LI K+ A +F M +
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQ 232
GC PD Y+ LI ++ KAK + + F+++ KG+ PN +TYN L+ Q
Sbjct: 380 GCEPDIVTYSILINSYC----KAKRVDDGMRLFREISSKGL---IPNTITYNTLVLGFCQ 432
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
+ ++ LF+E+ + P + TY ++D NG + + + +M+ ++ I
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
+N++I D +F SL KP + T+N MI K +A+ +F+KM
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552
Query: 353 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403
TP TY +I + + + E+ +E+ G ST+ +++
Sbjct: 553 EDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 148/329 (44%), Gaps = 15/329 (4%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKA 199
Y DT +S L+ +G+ A+ L M RPD + LI L R
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----- 190
Query: 200 LAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 257
+++AL +M G + P+ VTY +L ++ N LF+++ E + +
Sbjct: 191 VSEALVLIDRMVEYGFQ---PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247
Query: 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317
Y+ V+D+ K+G + S+ + M+ K D++T++ LI +D ++ + ++
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 318 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 375
P + TF+++I + K +A+ ++ +M P ITY +I G+C +
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENC 365
Query: 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 435
+ A ++FD + G + + T + ++ +YC + LF + G+ P++ TY
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 436 LYKAYTKANMKELVQKLLKRMEQNGIVPN 464
L + ++ ++L + M G+ P+
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPS 454
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 1/273 (0%)
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
A+ F+ M R P + +N L A A+ + D V K + + + D+YT ++
Sbjct: 54 AIDLFESMI-QSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
+ Y + + SVL R +PD ITF+ L++ + + + ++ K++
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382
P L T +++I +A + +M + P +TY ++ N + A ++
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 383 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442
F ++ + V + ++++ C +G +A LF G+ D TY L
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292
Query: 443 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+ K+L+ M I+P+ F ++ F
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + + + LE+F MQK R + GIY+ +I M + A LF + +
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G +PD YN +I K +L++A F+KMK + C P+ TYNIL+RA
Sbjct: 519 KGVKPDVVTYNVMIGGLC----KKGSLSEADMLFRKMKE-DGCTPDDFTYNILIRAHLGG 573
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ L +E+ + D T V+D
Sbjct: 574 SGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 5/312 (1%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223
A+ LF M S P P +N L +A T+ L G ++ G+E ++ T
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEH---DMYTM 108
Query: 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283
I++ + + + ++ + PD T++ +++ + G + E +++ RM
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343
+ +PD++T + LI+ + + + ++ +P T+ ++ K+
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403
A +F+KM S + Y +I + A +F+E+ G V T ++++
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
C +G + + + PD T+ L + K ++L M GI P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 464 NKRFFLEALETF 475
+ + ++ F
Sbjct: 349 DTITYNSLIDGF 360
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 61/250 (24%)
Query: 94 EPLVRT----LNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYS 149
EP + T +N Y K R + LF E+ + I +T Y+
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREI-----------------SSKGLIPNTITYN 424
Query: 150 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 209
L+ + G+ A LF EM + G P Y L+ + L KAL F+K
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE----LNKALEIFEK 480
Query: 210 MK----------------GM------------------ERCKPNIVTYNILLRACAQARN 235
M+ GM + KP++VTYN+++ + +
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 236 VDQVNALFKELHESILAPDIYTYNGVMDAY-GKNGMIKEMESVLSRMKSNQCKPDIITFN 294
+ + + LF+++ E PD +TYN ++ A+ G +G+I +E ++ MK D T
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE-LIEEMKVCGFSADSSTIK 599
Query: 295 LLIDSYGKRQ 304
++ID R+
Sbjct: 600 MVIDMLSDRR 609
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
NG++D N I ES M ++ P I FN L + + + +D + K +
Sbjct: 44 NGIVDIK-VNDAIDLFES----MIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMEL 98
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 376
+ + + T MI Y + + A V + + Y P IT+ ++ G+C V
Sbjct: 99 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN--GFCLEGRV 156
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436
S A + D + ++ + + T++ ++ C+ G +EA +L + G PD TY +
Sbjct: 157 SEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV 216
Query: 437 YKAYTKANMKELVQKLLKRMEQNGI 461
K+ L L ++ME+ I
Sbjct: 217 LNRLCKSGNSALALDLFRKMEERNI 241
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 160/325 (49%), Gaps = 5/325 (1%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L + D + L F W+++Q + D Y+ ++ +G+ Q L EM GC+P
Sbjct: 333 LKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKP 392
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238
+ YN LI H+ +A L +A+ F +M+ C+P+ VTY L+ A+A +D
Sbjct: 393 NTVTYNRLI----HSYGRANYLKEAMNVFNQMQ-EAGCEPDRVTYCTLIDIHAKAGFLDI 447
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298
+++ + E+ L+PD +TY+ +++ GK G + + M C P+++TFN++I
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 507
Query: 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358
+ K + ++ ++++ + ++ +P T++ ++ G +AE VF +M + P
Sbjct: 508 LHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVP 567
Query: 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
Y ++ ++G NV +A + + + + G V T N++L + +EA L
Sbjct: 568 DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLL 627
Query: 419 ENSHNMGVTPDSSTYKLLYKAYTKA 443
++ +G+ P TY LL T A
Sbjct: 628 QSMLALGLHPSLQTYTLLLSCCTDA 652
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 160/351 (45%), Gaps = 41/351 (11%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L G+++ + + VF MQ+ D Y LI + K G +AM ++ M+ +
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCE-PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA 458
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G PD Y+ +I KA L A F +M G + C PN+VT+NI++ A+AR
Sbjct: 459 GLSPDTFTYSVIINC----LGKAGHLPAAHRLFCEMVG-QGCTPNLVTFNIMIALHAKAR 513
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
N + L++++ + PD TY+ VM+ G G ++E E V + M+ PD +
Sbjct: 514 NYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYG 573
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
LL+D +GK DK Q +++++ + +P +PT NS++ + + +A + Q M A+
Sbjct: 574 LLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 633
Query: 355 KYTPSFITYECIITM---------YGYCDNV-------------------SRAREIFDEL 386
PS TY +++ G+C + +++ D +
Sbjct: 634 GLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHV 693
Query: 387 SKL-------GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430
S ++ K ++A+++ +GL EA ++E + V PD+
Sbjct: 694 SNFLDFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDA 744
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 124/275 (45%)
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
A ALG+F +K K + TY ++ +A+ ++N L E+ P+ TYN
Sbjct: 340 ANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNR 399
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ +YG+ +KE +V ++M+ C+PD +T+ LID + K D +++ + +
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG 459
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P T++ +I GKA A +F +M TP+ +T+ +I ++ N A
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+++ ++ G T + ++E G EA+ +F PD Y LL +
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579
Query: 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
KA + + + M Q G+ PN L TF
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 45/321 (14%)
Query: 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250
+H+ D ++ G+ + + M + P T + C V+ V+++ +
Sbjct: 254 VHSSDDRTIISSVEGFGKPSREMMKVTPR--TAPTPRQHCNPGYVVENVSSILRRFKWGH 311
Query: 251 LAPD-IYTYNGVMDAYGKNGMIKEMES--------------------------------- 276
A + ++ + MDAY N ++K+M++
Sbjct: 312 AAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGR 371
Query: 277 ---------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
+L M + CKP+ +T+N LI SYG+ + VF + + +P T
Sbjct: 372 AKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVT 431
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+ ++I + KA A ++Q+M +P TY II G ++ A +F E+
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMV 491
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
G + T N M+ + A L+ + N G PD TY ++ + E
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551
Query: 448 LVQKLLKRMEQNGIVPNKRFF 468
+ + M++ VP++ +
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVY 572
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 156/328 (47%), Gaps = 5/328 (1%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L + + + L F W+++Q + D Y+ ++ +G+ Q L EM GC+P
Sbjct: 338 LKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQP 397
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238
+ YN LI H+ +A L +A+ F +M+ CKP+ VTY L+ A+A +D
Sbjct: 398 NTVTYNRLI----HSYGRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDI 452
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298
+++ + L+PD +TY+ +++ GK G + + M C P+++T+N+++D
Sbjct: 453 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512
Query: 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358
+ K + + ++++ + ++ +P T++ ++ G +AE VF +M + P
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP 572
Query: 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
Y ++ ++G NV +A + + + G V T N++L + EA L
Sbjct: 573 DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
Query: 419 ENSHNMGVTPDSSTYKLLYKAYTKANMK 446
+N +G+ P TY LL T K
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRSK 660
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 120/275 (43%)
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
ALG+F +K K + TY ++ +A+ +N L E+ P+ TYN
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ +YG+ + E +V ++M+ CKPD +T+ LID + K D +++ +
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P T++ +I GKA A +F +M TP+ +TY ++ ++ N A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 524
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+++ ++ G + T + ++E G EA+ +F PD Y LL +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584
Query: 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
KA E + + M G+ PN L TF
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 619
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/420 (23%), Positives = 183/420 (43%), Gaps = 52/420 (12%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
KW + V W+ ++ + D ++ LI G+K Q + A L+ ++ S P Y
Sbjct: 134 KWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTY 193
Query: 184 NALITAHL------------------HTRDKAKALA-----------------KALGYFQ 208
LI A+ H K + +A+ FQ
Sbjct: 194 ALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQ 253
Query: 209 KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 268
+MK +RCKP TYN+++ +A L+ E+ P+I TY +++A+ +
Sbjct: 254 RMK-RDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFARE 312
Query: 269 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
G+ ++ E + +++ + +PD+ +N L++SY + ++F + H +P ++
Sbjct: 313 GLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASY 372
Query: 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388
N M+ YG+A L AE VF++M + P+ ++ +++ Y +V++ I E+S+
Sbjct: 373 NIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSE 432
Query: 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448
G + LN+ML Y G T+ + + N T D STY +L Y KA E
Sbjct: 433 NGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLER 492
Query: 449 VQKLLKRMEQNGIVPN-------------KRFFLEALETFS---SSLAGSQSGSAKTDLT 492
+++L +++ P+ K+ +++ LE F S G+AK L+
Sbjct: 493 IEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLS 552
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202
AD Y+ LI + GK G LF E++ RPD + + I A+ + K K
Sbjct: 472 ADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAY----SRKKLYVK 527
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250
L F++M C P+ T +LL AC+ V+QV ++ + +H+ +
Sbjct: 528 CLEVFEEMID-SGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGV 574
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 172/341 (50%), Gaps = 16/341 (4%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L + + M+K + AD IY+ +I + K A+ LF+EM N G RPD Y++LI+
Sbjct: 243 LSLLKKMEKGKIE-ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301
Query: 189 A---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245
+ D ++ L+ + + PN+VT++ L+ A + + + L+ E
Sbjct: 302 CLCNYGRWSDASRLLSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353
Query: 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
+ + + PDI+TY+ +++ + + + E + + M S C P+++T++ LI + K +
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
++ ++F+ + T+ ++I + +AR A+ VF++M ++ P+ +TY
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN- 472
Query: 366 IITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
I + G C N +++A +F+ L + + + T N M+E C G + LF N
Sbjct: 473 -ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL 531
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
GV+P+ Y + + + KE LLK+M+++G +PN
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 11/335 (3%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D YS I ++ Q LA+ + ++M G PD ++L+ + H+ K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ +M M KP+ T+ L+ + AL ++ + PD+ TY V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
K G I S+L +M+ + + D++ +N +ID K + D +F + + +P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291
Query: 324 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
+ T++S+I NYG+ A + M K P+ +T+ +I + + A
Sbjct: 292 DVFTYSSLISCLCNYGR---WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+++DE+ K D + T ++++ +CM+ EA +FE + P+ TY L K +
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Query: 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
KA E +L + M Q G+V N + + F
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 159/363 (43%), Gaps = 48/363 (13%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT ++ LI + + A+ L +M GC+PD Y ++ D +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239
Query: 201 AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
AL +KM KG + + ++V YN ++ + +++D LF E+ + PD++TY+
Sbjct: 240 DLALSLLKKMEKG--KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
++ G + +LS M + P+++TF+ LID++ K + E+++ ++
Sbjct: 298 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 357
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII------------ 367
P + T++S+I + +A+++F+ M + P+ +TY +I
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEG 417
Query: 368 ---------------------TMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAM 401
++G+ CDN A+ +F ++ +G + T N +
Sbjct: 418 MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN---AQMVFKQMVSVGVHPNILTYNIL 474
Query: 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
L+ C NG +A ++FE + PD TY ++ + KA E +L + G+
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534
Query: 462 VPN 464
PN
Sbjct: 535 SPN 537
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 44/315 (13%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 205
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 385
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
F+ M + C PN+VTY+ L++ +A+ V++ LF+E+ + L + TY ++ +
Sbjct: 386 -FELMISKD-CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+ + V +M S P+I+T+N+L+D K K VF+ L S +P +
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
T+N MI KA GK E E+F
Sbjct: 504 YTYNIMIEGMCKA---GKVE--------------------------------DGWELFCN 528
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
LS G V N M+ +C G EAD L + G P+S TY L +A +
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
Query: 446 KELVQKLLKRMEQNG 460
+E +L+K M G
Sbjct: 589 REASAELIKEMRSCG 603
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 4/260 (1%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+IV +N LL A A+ + V +L +++ ++ D+YTY+ ++ + + + +V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L++M +PDI+T + L++ Y + + ++ KP TF ++I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 395
+A + +M P +TY ++ G C ++ A + ++ K + V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADV 258
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
N +++ C +A LF N G+ PD TY L +LL
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 318
Query: 456 MEQNGIVPNKRFFLEALETF 475
M + I PN F ++ F
Sbjct: 319 MIERKINPNVVTFSALIDAF 338
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L K+ K + + VF ++Q+ D Y+ +I M K G+ LF +
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTME-PDIYTYNIMIEGMCKAGKVEDGWELFCNLSL 531
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G P+ YN +I+ R +K A +L +KMK + PN TYN L+RA +
Sbjct: 532 KGVSPNVIAYNTMISGF--CRKGSKEEADSL--LKKMKE-DGPLPNSGTYNTLIRARLRD 586
Query: 234 RNVDQVNALFKELHESILAPDIYT 257
+ + L KE+ A D T
Sbjct: 587 GDREASAELIKEMRSCGFAGDAST 610
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 162/328 (49%), Gaps = 17/328 (5%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKA 199
AD IYS +I + K A+ LF+EM N G RPD Y++LI+ + D ++
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L+ L + PN+VT+N L+ A A+ + + LF E+ + + P+I TYN
Sbjct: 298 LSDMLE--------RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMH 318
+++ + + + E + + + M S C PD++T+N LI+ + K ++ D ME +F+ +
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSR 408
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 376
T+ ++I + +A A+ VF++M + P+ +TY ++ G C N +
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKL 466
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436
+A +F+ L K + + T N M E C G + LF + GV PD Y +
Sbjct: 467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526
Query: 437 YKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ K +KE L +M+++G +P+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 157/366 (42%), Gaps = 48/366 (13%)
Query: 138 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197
+ Y DT ++ L+ + + + A+ L M GC+PD Y A+I L R +
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING-LCKRGEP 221
Query: 198 KALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256
AL KM KG + + ++V Y+ ++ + + R+VD LF E+ + PD++
Sbjct: 222 DL---ALNLLNKMEKG--KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVF 276
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
TY+ ++ G + +LS M + P+++TFN LID++ K + E++F +
Sbjct: 277 TYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 336
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT-------- 368
+ P + T+NS+I + +A+ +F M + P +TY +I
Sbjct: 337 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKV 396
Query: 369 -------------------------MYGY-----CDNVSRAREIFDELSKLGKDMKVSTL 398
++G+ CDN A+ +F ++ G + T
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN---AQMVFKQMVSDGVHPNIMTY 453
Query: 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458
N +L+ C NG +A ++FE + PD TY ++ + KA E L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 459 NGIVPN 464
G+ P+
Sbjct: 514 KGVKPD 519
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 128/310 (41%), Gaps = 42/310 (13%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKAKALAKALGY 206
++ LI K+G+ A LF EM P+ YN+LI +H R L +A
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR-----LDEAQQI 367
Query: 207 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266
F M + C P++VTYN L+ +A+ V LF+++ L + TY ++ +
Sbjct: 368 FTLMVSKD-CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 326
+ + V +M S+ P+I+T+N L+D K +K VF+ L SK +P +
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486
Query: 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386
T+N M KA GK E ++F L
Sbjct: 487 TYNIMSEGMCKA---GKVE--------------------------------DGWDLFCSL 511
Query: 387 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446
S G V N M+ +C GL EA LF G PDS TY L +A+ + K
Sbjct: 512 SLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDK 571
Query: 447 ELVQKLLKRM 456
+L+K M
Sbjct: 572 AASAELIKEM 581
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 158/390 (40%), Gaps = 47/390 (12%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
K + +++F M K R + + +SKL++ + K + L + +M G + Y
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTY 103
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
N +I + ALA LG K+ P+IVT N LL + + AL
Sbjct: 104 NIMINCLCRRSQLSFALA-ILGKMMKLG----YGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF---------- 293
++ E PD T+ ++ ++ E +++ RM C+PD++T+
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
Query: 294 -------NLL------------------IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
NLL IDS K + D +F + + +P + T+
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 329 NSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
+S+I NYG+ A + M K P+ +T+ +I + + A ++FDE
Sbjct: 279 SSLISCLCNYGR---WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
+ + D + T N+++ +CM+ EA +F + PD TY L + KA
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 446 KELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+L + M + G+V N + + F
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 6/247 (2%)
Query: 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV 182
D+ + ++F M + + D Y+ LI K + M LF +M G +
Sbjct: 359 DRLDEAQQIFTLMVSKDC-LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 242
Y LI D A F++M + PNI+TYN LL + +++ +
Sbjct: 418 YTTLIHGFFQASDCDNAQM----VFKQMVS-DGVHPNIMTYNTLLDGLCKNGKLEKAMVV 472
Query: 243 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302
F+ L +S + PDIYTYN + + K G +++ + + KPD+I +N +I + K
Sbjct: 473 FEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCK 532
Query: 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362
+ ++ +F + P T+N++I + + + + + ++M + ++ T
Sbjct: 533 KGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDAST 592
Query: 363 YECIITM 369
Y + M
Sbjct: 593 YGLVTDM 599
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
K+ K + +E+FR M + R + +T Y+ LI + A +F +M + G P+
Sbjct: 392 KAKKVVDGMELFRDMSR-RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450
Query: 181 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVN 240
YN L+ KA+ Y QK K ME P+I TYNI+ +A V+
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMV-VFEYLQKSK-ME---PDIYTYNIMSEGMCKAGKVEDGW 505
Query: 241 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300
LF L + PD+ YN ++ + K G+ +E ++ +MK + PD T+N LI ++
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 118/279 (42%), Gaps = 5/279 (1%)
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L +A+ F +M R P+IV ++ LL A A+ + D V + +++ ++ ++YTYN
Sbjct: 46 LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + ++L +M P I+T N L++ + + + ++
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 377
+P TF +++ + +A + ++M P +TY +I G C
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN--GLCKRGEPD 222
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
A + +++ K + V + ++++ C +A LF N G+ PD TY L
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 476
+LL M + I PN F ++ F+
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 166/377 (44%), Gaps = 38/377 (10%)
Query: 98 RTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK 157
+ LN + E FLLFEE+ K+ +AD Y+ ++ K
Sbjct: 488 KVLNYLCNASKMELAFLLFEEM-----------------KRGGLVADVYTYTIMVDSFCK 530
Query: 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 217
G A F+EMR GC P+ Y ALI A+L KAK ++ A F+ M E C
Sbjct: 531 AGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----KAKKVSYANELFETMLS-EGCL 585
Query: 218 PNIVTYNILL----------RAC------AQARNVDQVNALFKELHESILAPDIYTYNGV 261
PNIVTY+ L+ +AC +++V V+ FK+ ++ P++ TY +
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645
Query: 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
+D + K+ ++E +L M C+P+ I ++ LID K D+ ++V +
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGF 705
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381
TL T++S+I Y K + Q A V KM P+ + Y +I A +
Sbjct: 706 PATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYK 765
Query: 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441
+ + + G V T AM++ + M G L E + GV P+ TY++L
Sbjct: 766 LMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCC 825
Query: 442 KANMKELVQKLLKRMEQ 458
K ++ LL+ M+Q
Sbjct: 826 KNGALDVAHNLLEEMKQ 842
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 161/402 (40%), Gaps = 59/402 (14%)
Query: 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL 186
+C V M + Y I++ L+ G A L +M G P VYN L
Sbjct: 355 RCKRVLNMMMMEGCY-PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNIL 413
Query: 187 ITAHLHTRDK-------------------------------------AKALAKALGYFQK 209
I + +D A KA ++
Sbjct: 414 IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473
Query: 210 MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269
M G + P+ TY+ +L A ++ LF+E+ L D+YTY ++D++ K G
Sbjct: 474 MIG-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Query: 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329
+I++ + M+ C P+++T+ LI +Y K + ++F++++ P + T++
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592
Query: 330 SMIINYGKARLQGKAEYVFQKMTAMKYT----------------PSFITYECIITMYGYC 373
++I + KA KA +F++M K P+ +TY ++ G+C
Sbjct: 593 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLD--GFC 650
Query: 374 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431
+ V AR++ D +S G + +A+++ C G EA + G
Sbjct: 651 KSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 710
Query: 432 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
TY L Y K ++L K+L +M +N PN + E ++
Sbjct: 711 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/388 (18%), Positives = 157/388 (40%), Gaps = 43/388 (11%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
+ F W +Q Y +Y+ L+ ++ + ++ ++R+ D V+ +
Sbjct: 149 ISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLN 204
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
+ + + + AL ++K R +P+ TYN L++A +A +D + + +E+
Sbjct: 205 VLVRKHCRNGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 249 SIL--------------------------------APDIYTYNGVMDAYGKNGMIKEMES 276
+ L PD Y ++ + + +E
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336
L+RM++ C P+++T++ L+ ++ + ++V +M P+ FNS++ Y
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 337 KARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYG-----YCDNVSRAREIFDELSKLG 390
+ A + +KM + P ++ Y +I ++ G CD + A + + E+ G
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAG 443
Query: 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 450
+ +++ C G +A + G PD+STY + A+ EL
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 451 KLLKRMEQNGIVPNKRFFLEALETFSSS 478
L + M++ G+V + + +++F +
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKA 531
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 152/359 (42%), Gaps = 29/359 (8%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L K KW + L + + ++ DT Y+KLI+ + + AM + MR + C P
Sbjct: 280 LCKVGKWREALT----LVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQK---MKGMERCKPNIVTYNILLRACAQARN 235
+ Y+ L+ L+ K LG ++ M ME C P+ +N L+ A + +
Sbjct: 336 NVVTYSTLLCGCLNK--------KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGD 387
Query: 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKN------GMIKEMESVLSRMKSNQC--- 286
L K++ + P YN ++ + + ++ E S M +
Sbjct: 388 HSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLN 447
Query: 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAE 345
K ++ +F + S GK ++K V + ++ P T+ S ++NY A A
Sbjct: 448 KINVSSFTRCLCSAGK---YEKAFSVIREMIGQGFIPDTSTY-SKVLNYLCNASKMELAF 503
Query: 346 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405
+F++M TY ++ + + +AR+ F+E+ ++G V T A++ AY
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ A+ LFE + G P+ TY L + KA E ++ +RM + VP+
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 53/323 (16%)
Query: 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 203
+Y LI + K G+ A + +EM G Y++LI + + + +K L+K
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
L C PN+V Y ++ + D+ L + + E P++ TY ++D
Sbjct: 736 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 311
+G G I+ +L RM S P+ +T+ +LID K A D +M+Q
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847
Query: 312 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
+ + P L + +I N KA+ A + ++
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907
Query: 351 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405
+ T + Y+ TY +I + V A ++F E++K G ++ + ++++
Sbjct: 908 VATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Query: 406 CMNGLPTEADLLFENSHNMGVTP 428
N +EA LL + +M V P
Sbjct: 965 FRNSKISEALLLLDFISHM-VCP 986
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/449 (24%), Positives = 199/449 (44%), Gaps = 32/449 (7%)
Query: 25 SSSSSSSFNQSSSQNYNFTHRHIPLSLRTRPRTGICCVWTRPRSKRGRKSE-------EL 77
SS + N + ++ F H + +LR R +P + G S+ E
Sbjct: 55 SSVCIDNVNDHAERSSEFHHYGVGTNLRAR---------VKPMKQFGLSSDGPITENDEE 105
Query: 78 ESKELVRVLMRS--FSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWM 135
+ E++ L + +D LV + ++ +V C L L + D+ + + + R M
Sbjct: 106 TNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVM 165
Query: 136 QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195
+ DT Y+ +I + KKG R A+ L +M SG PD YN +I +
Sbjct: 166 VMSGG-VPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGN 224
Query: 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILL----RACAQARNVDQVNALFKELHESIL 251
+A+ F K + C P ++TY +L+ R C AR ++ + +++
Sbjct: 225 AEQAIR-----FWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIE----VLEDMAVEGC 275
Query: 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311
PDI TYN +++ + G ++E+ SV+ + S+ + + +T+N L+ S + +D++E+
Sbjct: 276 YPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEE 335
Query: 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371
+ + + PT+ T+N +I KARL +A F +M K P +TY ++
Sbjct: 336 ILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMS 395
Query: 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431
V A E+ L + T N++++ GL +A L+ + G+ PD
Sbjct: 396 KEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDI 455
Query: 432 TYKLLYKAYTKANMKELVQKLLKRMEQNG 460
T + L + +AN+ E ++LK G
Sbjct: 456 TRRSLIYGFCRANLVEEAGQVLKETSNRG 484
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 97/247 (39%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+ + + L+R A+ +D+ + + + S PD TYN ++ K G I+ +
Sbjct: 137 PHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVL 196
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L M + PD+IT+N +I ++ + +K + + P + T+ ++ +
Sbjct: 197 LEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCR 256
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 397
+A V + M P +TY ++ N+ + + G ++ T
Sbjct: 257 YCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVT 316
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
N +L + C + E + + + P TY +L KA + +M
Sbjct: 317 YNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQML 376
Query: 458 QNGIVPN 464
+ +P+
Sbjct: 377 EQKCLPD 383
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L L K+ + ++ F M +Q+ + D Y+ ++ M K+G A+ L ++N
Sbjct: 354 ILINGLCKARLLSRAIDFFYQMLEQKC-LPDIVTYNTVLGAMSKEGMVDDAIELLGLLKN 412
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACA 231
+ C P YN++I K + KAL + +M G+ P+ +T L+
Sbjct: 413 TCCPPGLITYNSVIDG----LAKKGLMKKALELYHQMLDAGI---FPDDITRRSLIYGFC 465
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291
+A V++ + KE TY V+ K I+ V+ M + CKPD
Sbjct: 466 RANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDET 525
Query: 292 TFNLLI 297
+ ++
Sbjct: 526 IYTAIV 531
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 2/225 (0%)
Query: 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 313
D T N ++ NG + + ++ M + P + + L+ + DK +
Sbjct: 103 DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL 162
Query: 314 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGY 372
+ ++ S P T+N +I N K A + + M+ P ITY +I M+ Y
Sbjct: 163 RVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222
Query: 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432
N +A + + + G + T ++E C A + E+ G PD T
Sbjct: 223 -GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVT 281
Query: 433 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477
Y L + E V +++ + +G+ N + L + S
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCS 326
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 162/327 (49%), Gaps = 15/327 (4%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR---DKAKA 199
A+ IYS +I + K A+ LF+EM N G RP+ Y++LI+ + D ++
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L+ + + PN+VT+N L+ A + + + L+ E+ + + PDI+TY+
Sbjct: 318 LSDMIE--------RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + + E + + M S C P+++T+N LI+ + K + D+ ++F+ +
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 377
T+ ++I + +AR A+ VF++M + P+ +TY ++ G C N +
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLE 487
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
+A +F+ L + + + T N M+E C G + LF + GV PD Y +
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPN 464
+ + +KE L ++M ++G +P+
Sbjct: 548 SGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 143/304 (47%), Gaps = 11/304 (3%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 222
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227
Query: 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 282
Y +++ + ++D L ++ + + ++ Y+ V+D+ K + ++ + M+
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287
Query: 283 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 342
+ +P++IT++ LI + + ++ ++ K P + TFN++I + K
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLV 347
Query: 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNA 400
+AE ++ +M P TY +I + D + A+ +F+ + + KD V T N
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNT 405
Query: 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
++ +C E LF G+ ++ TY L + +A + Q + K+M +G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465
Query: 461 IVPN 464
+ PN
Sbjct: 466 VHPN 469
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 5/323 (1%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT ++ LI + + A+ L M GC+P+ Y ++ D +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----I 241
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
A KM+ + + N+V Y+ ++ + + R+ D LF E+ + P++ TY+
Sbjct: 242 DLAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ + +LS M + P+++TFN LID++ K + E+++ ++
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P + T++S+I + +A+++F+ M + P+ +TY +I + +
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
E+F E+S+ G T ++ + A ++F+ + GV P+ TY L
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480
Query: 441 TKANMKELVQKLLKRMEQNGIVP 463
K E + + ++++ + P
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEP 503
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 40/363 (11%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++KL++ + K + L + L +M+ G + YN LI + ALA LG
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 146
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KME---------- 310
+ E +++ RM C+P+++T+ ++++ KR D KME
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 311 ------------------QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
+F + + +P + T++S+I A + M
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 353 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
EA +FE + P+ TY L + KA + +L + M Q G+V N + +
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Query: 473 ETF 475
F
Sbjct: 443 HGF 445
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L A+G F M R P+I +N LL A A+ + D V +L +++ ++ ++YTYN
Sbjct: 66 LDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + I ++L +M +P I+T + L++ Y + + ++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 377
+P TF ++I +A + +M P+ +TY ++ G C ++
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDID 242
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
A + +++ + V + ++++ C +A LF N GV P+ TY L
Sbjct: 243 LAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 302
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+LL M + I PN F ++ F
Sbjct: 303 SCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L L KS + +EV+R M + + YS L+ +GK+ M L EM
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETL 252
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G +P+ VY I + R A + +A ++M E C P++VTY +L+ A AR
Sbjct: 253 GLKPN--VYTFTICIRVLGR--AGKINEAYEILKRMDD-EGCGPDVVTYTVLIDALCTAR 307
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
+D +F+++ PD TY ++D + N + ++ S M+ + PD++TF
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+L+D+ K F + + P L T+N++I + A +F M ++
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL 427
Query: 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
P+ TY I YG + A E F+++ G + NA L + G EA
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREA 487
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+F ++G+ PDS TY ++ K Y+K + KLL M +NG P+
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 180/399 (45%), Gaps = 12/399 (3%)
Query: 72 RKSE--ELESKELVRVLMRSFSDKEP---LVRTLNKYVKVVRS-EHCFLLFEELGKSDKW 125
RKS +L S E V ++SF D + +++ + +V + E C + E L K
Sbjct: 75 RKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKL 134
Query: 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA 185
+ VF MQK R DT Y + + KG + A + +MR G + YN
Sbjct: 135 EEMAYVFDLMQK-RIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNG 193
Query: 186 LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245
LI L K++ +A+ +++M +E +P++ TY+ L+ + R++D V L KE
Sbjct: 194 LIHLLL----KSRFCTEAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE 248
Query: 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
+ L P++YT+ + G+ G I E +L RM C PD++T+ +LID+ +
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARK 308
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
D ++VF+ + + KP T+ +++ + R + + +M + P +T+
Sbjct: 309 LDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTI 368
Query: 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425
++ N A + D + G + T N ++ +A LF N ++G
Sbjct: 369 LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
V P + TY + Y K+ + ++M+ GI PN
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPN 467
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 153/326 (46%), Gaps = 42/326 (12%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y+ LI + + +A +F +++++GC PD + YN L+ A+ K+ + + +
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY----GKSGKIDELFELY 843
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 266
++M E C+ N +T+NI++ +A NVD L+ +L + +P TY ++D
Sbjct: 844 KEMSTHE-CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 326
K+G + E + + M C+P+ +N+LI+ +GK D +FK ++ +P L
Sbjct: 903 KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962
Query: 327 TFN----------------------------------SMIIN-YGKARLQGKAEYVFQKM 351
T++ ++IIN GK+ +A +F +M
Sbjct: 963 TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022
Query: 352 -TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
T+ TP TY +I G V A +I++E+ + G + V T NA++ Y ++G
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLL 436
P A +++ G +P++ TY+ L
Sbjct: 1083 PEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 157/359 (43%), Gaps = 7/359 (1%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L K+ + + + M+ Q + + Y+ LI + + + A+ LF M +
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALELFGNMES 426
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G +P Y I + + D AL F+KMK + PNIV N L + A+A
Sbjct: 427 LGVKPTAYTYIVFIDYYGKSGDSVSALET----FEKMK-TKGIAPNIVACNASLYSLAKA 481
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ +F L + L PD TYN +M Y K G I E +LS M N C+PD+I
Sbjct: 482 GRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 541
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N LI++ K D+ ++F + K KPT+ T+N+++ GK +A +F+ M
Sbjct: 542 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ 601
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
P+ IT+ + D V+ A ++ ++ +G V T N ++ NG E
Sbjct: 602 KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKE 661
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
A F + V PD T L KA++ E K++ N F E L
Sbjct: 662 AMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDL 719
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 169/402 (42%), Gaps = 66/402 (16%)
Query: 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV------MGKKGQTRLAMWLFSEMRN 173
GKS + LE F M+ + GI ++A + K G+ R A +F +++
Sbjct: 444 GKSGDSVSALETFEKMKTK-------GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQ 232
G PD YN ++ + K + +A+ +M ME C+P+++ N L+ +
Sbjct: 497 IGLVPDSVTYNMMMKCY----SKVGEIDEAIKLLSEM--MENGCEPDVIVVNSLINTLYK 550
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
A VD+ +F + E L P + TYN ++ GKNG I+E + M C P+ IT
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
FN L D K ++ +M P + T+N++I K +A F +M
Sbjct: 611 FNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670
Query: 353 AMKYTPSFITYEC-----------------IITMYGYCDNVSRAREIFDE------LSKL 389
+ Y P F+T C IIT + Y + + +F E L++
Sbjct: 671 KLVY-PDFVTL-CTLLPGVVKASLIEDAYKIITNFLY-NCADQPANLFWEDLIGSILAEA 727
Query: 390 GKDMKVS----------------TLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSST 432
G D VS L ++ C + + A LFE + ++GV P T
Sbjct: 728 GIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPT 787
Query: 433 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEA 471
Y LL +A+M E+ Q + +++ G +P+ F L+A
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 8/301 (2%)
Query: 168 FSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225
FSE + N CR S+ +I K ++ A F+K +P + TYN+
Sbjct: 735 FSERLVANGICRDGDSILVPIIRYSC----KHNNVSGARTLFEKFTKDLGVQPKLPTYNL 790
Query: 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285
L+ +A ++ +F ++ + PD+ TYN ++DAYGK+G I E+ + M +++
Sbjct: 791 LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE 850
Query: 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKA 344
C+ + IT N++I K D ++ LM ++ PT T+ +I K+ +A
Sbjct: 851 CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 910
Query: 345 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404
+ +F+ M P+ Y +I +G A +F + K G + T + +++
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDC 970
Query: 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVP 463
CM G E F+ G+ PD Y L+ K++ E L M+ + GI P
Sbjct: 971 LCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Query: 464 N 464
+
Sbjct: 1031 D 1031
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 131/335 (39%), Gaps = 6/335 (1%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
EVF M+ R + D Y L+ +SEM G PD + L+ A
Sbjct: 314 EVFEKMKTGR-HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
KA +A M+ + PN+ TYN L+ + +D LF +
Sbjct: 373 LC----KAGNFGEAFDTLDVMRD-QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL 427
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309
+ P YTY +D YGK+G +MK+ P+I+ N + S K +
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREA 487
Query: 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369
+Q+F L P T+N M+ Y K +A + +M P I +I
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547
Query: 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429
D V A ++F + ++ V T N +L NG EA LFE G P+
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Query: 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ T+ L+ K + L K+L +M G VP+
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 168/397 (42%), Gaps = 62/397 (15%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L LGK+ K + +E+F M Q+ +T ++ L + K + LA+ + +M +
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMV-QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM 637
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
GC PD YN +I + K + +A+ +F +MK + P+ VT LL +A
Sbjct: 638 GCVPDVFTYNTIIFGLV----KNGQVKEAMCFFHQMKKL--VYPDFVTLCTLLPGVVKAS 691
Query: 235 NVDQV----------------NALFKELHESILAPDIYTYNGVMDAYG------KNGMIK 272
++ N +++L SILA G+ +A NG+ +
Sbjct: 692 LIEDAYKIITNFLYNCADQPANLFWEDLIGSILAE-----AGIDNAVSFSERLVANGICR 746
Query: 273 EMESVLSRMKSNQCK---------------------PDIITFNLLIDSYGKRQAFDKMEQ 311
+ +S+L + CK P + T+NLLI + + +
Sbjct: 747 DGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQD 806
Query: 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIIT 368
VF + + P + T+N ++ YGK+ GK + +F+ +M+ + + IT+ +I+
Sbjct: 807 VFLQVKSTGCIPDVATYNFLLDAYGKS---GKIDELFELYKEMSTHECEANTITHNIVIS 863
Query: 369 MYGYCDNVSRAREIF-DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427
NV A +++ D +S T +++ +G EA LFE + G
Sbjct: 864 GLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR 923
Query: 428 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
P+ + Y +L + KA + L KRM + G+ P+
Sbjct: 924 PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 960
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 5/327 (1%)
Query: 138 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197
R + D Y+ +IA + K AM + + M +G PD YN++ LH +
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 279
Query: 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 257
+A+G+ +KM+ + +P++VTY++L+ + + +F + + L P+I T
Sbjct: 280 GQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317
Y ++ Y G + EM +L M N PD F++LI +Y K+ D+ VF +
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398
Query: 318 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 377
P T+ ++I K+ A F++M +P I Y +I C+
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
RA E+ E+ G + N++++++C G E++ LFE +GV P+ TY L
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPN 464
Y A + KLL M G+ PN
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 5/321 (1%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D ++S LI K+G+ AM +FS+MR G P+ Y A+I K+ + A
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC----KSGRVEDA 425
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ YF++M E P + YN L+ ++ L E+ + + + +N ++D
Sbjct: 426 MLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
++ K G + E E + M KP++IT+N LI+ Y D+ ++ ++ KP
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
T++++I Y K A +F++M + +P ITY I+ + A+E++
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
+++ G +++ST N +L C N L +A +F+N M + ++ T+ ++ A K
Sbjct: 605 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664
Query: 444 NMKELVQKLLKRMEQNGIVPN 464
+ + L NG+VPN
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPN 685
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 7/324 (2%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y LI + G+ L + G R D + L+ + + A+
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNG 260
L ++ C PN+ +YNILL+ C + R+ + + L + PD+ +Y
Sbjct: 146 LRRMTELG----CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
V++ + K G + S M PD++T+N +I + K QA DK +V +++ +
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P T+NS++ Y + +A +KM + P +TY ++ AR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+IFD ++K G +++T +L+ Y G E L + G+ PD + +L AY
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 441 TKANMKELVQKLLKRMEQNGIVPN 464
K + + +M Q G+ PN
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPN 405
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 17/299 (5%)
Query: 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNV 236
PD Y LI A ALG K KG + + + + LL+ CA R
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFA-ALGNVIK-KGF---RVDAIAFTPLLKGLCADKRTS 139
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITF 293
D ++ + + + E P++++YN ++ +E +L M ++ PD++++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
+I+ + K DK + ++ P + T+NS+I KA+ KA V M
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGL 410
P +TY I ++GYC + + +E L K+ G + V T + +++ C NG
Sbjct: 260 NGVMPDCMTYNSI--LHGYCSS-GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 468
EA +F++ G+ P+ +TY L + Y TK + E+ LL M +NGI P+ F
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPDHYVF 374
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 154/387 (39%), Gaps = 49/387 (12%)
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
K K Q + VF M++Q + Y +I ++ K G+ AM F +M + G P
Sbjct: 383 KQGKVDQAMLVFSKMRQQGLN-PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 181 SVYNALITAH-------------LHTRDKAKAL---------------AKALGYFQKMKG 212
VYN+LI L D+ L + + + +
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501
Query: 213 MER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270
M R KPN++TYN L+ A +D+ L + L P+ TY+ +++ Y K
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561
Query: 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330
+++ + M+S+ PDIIT+N+++ + + ++++ + S + L T+N
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 621
Query: 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390
++ K +L A +FQ + M T+ +I A+++F S G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681
Query: 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 450
T M E GL E D LF + + G T DS +V+
Sbjct: 682 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF------------IVR 729
Query: 451 KLLKRMEQN------GIVPNKRFFLEA 471
+LL+R E ++ K F LEA
Sbjct: 730 ELLQRGEITRAGTYLSMIDEKHFSLEA 756
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 22/198 (11%)
Query: 100 LNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG 159
+N Y K+ R E +LF+E+ S D Y+ ++ + +
Sbjct: 553 INGYCKISRMEDALVLFKEMESS-----------------GVSPDIITYNIILQGLFQTR 595
Query: 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 219
+T A L+ + SG + + S YN + LH K K AL FQ + M+ K
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNII----LHGLCKNKLTDDALQMFQNLCLMD-LKLE 650
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
T+NI++ A + D+ LF + L P+ +TY + + G+++E++ +
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710
Query: 280 RMKSNQCKPDIITFNLLI 297
M+ N C D N ++
Sbjct: 711 SMEDNGCTVDSGMLNFIV 728
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 336
++R +++ PD+ T+ +LI + D +++ + F ++
Sbjct: 75 MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134
Query: 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 393
R + V ++MT + P+ +Y I + G CD +R++E + L + D
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYN--ILLKGLCDE-NRSQEALELLHMMADDRGGG 191
Query: 394 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 447
V + ++ + G ++D + H M G+ PD TY + A KA +
Sbjct: 192 SPPDVVSYTTVINGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248
Query: 448 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
++L M +NG++P+ + L + SS
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 163/343 (47%), Gaps = 9/343 (2%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
++ + IY+ +I + K A+ +F M G R D YN LI+ L +
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG-LSNSGRWTDA 238
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
A+ L K K PN++ + L+ + N+ + L+KE+ + P+++TYN
Sbjct: 239 ARLLRDMVKRK----IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
+++ + +G + + + + M S C PD++T+N LI + K + + ++F + +
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 378
T+N++I Y +A A+ VF +M +P +TY I + C+N + +
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN--ILLDCLCNNGKIEK 412
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A + ++L K D+ + T N +++ C EA LF + GV PD+ Y +
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
Query: 439 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481
+ ++ KL +RM+++G +P++R + E L +SL+
Sbjct: 473 GLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSA 515
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 136/320 (42%), Gaps = 11/320 (3%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-DKAKALAKALGY 206
+++++ V+ K + + ++L+ +M N G D +Y+ I H R + LG
Sbjct: 82 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHD--LYSFTILIHCFCRCSRLSLALALLGK 139
Query: 207 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266
K+ +P+IVT LL Q + +L + P++ YN V++
Sbjct: 140 MMKLGF----RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLC 195
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 326
KN + V M+ + D +T+N LI + ++ + ++ K P +
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 255
Query: 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 384
F ++I + K +A ++++M P+ TY +I G+C + + A+ +FD
Sbjct: 256 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN--GFCIHGCLGDAKYMFD 313
Query: 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444
+ G V T N ++ +C + + LF G+ D+ TY L Y +A
Sbjct: 314 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAG 373
Query: 445 MKELVQKLLKRMEQNGIVPN 464
+ QK+ RM G+ P+
Sbjct: 374 KLNVAQKVFNRMVDCGVSPD 393
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 112/282 (39%), Gaps = 35/282 (12%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+IV + +L A+ D V L+ ++ ++ D+Y++ ++ + + + ++
Sbjct: 77 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L +M +P I+T L++ + + F + + S+ P + +N++I K
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 196
Query: 338 ARLQGKAEYVF-----------------------------------QKMTAMKYTPSFIT 362
R A VF + M K P+ I
Sbjct: 197 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256
Query: 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422
+ +I + N+ AR ++ E+ + V T N+++ +C++G +A +F+
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 423 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ G PD TY L + K+ E KL M G+V +
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 6/231 (2%)
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296
D +LF E+ +S P I + V+ K + + +M++ D+ +F +L
Sbjct: 61 DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 120
Query: 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356
I + + + +M +P++ T S++ + + +A + M +
Sbjct: 121 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 180
Query: 357 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
P+ + Y +I G C N ++ A E+F + K G T N ++ +G T+A
Sbjct: 181 VPNVVIYNTVIN--GLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPN 464
L + + P+ + L + K N+ E + L K M + +VPN
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLE-ARNLYKEMIRRSVVPN 288
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 78/200 (39%)
Query: 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335
S+ M ++ P I+ F ++ K FD + ++ + + L +F +I +
Sbjct: 65 SLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCF 124
Query: 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395
+ A + KM + + PS +T ++ + + A + D + G V
Sbjct: 125 CRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNV 184
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
N ++ C N A +F G+ D+ TY L + + +LL+
Sbjct: 185 VIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 244
Query: 456 MEQNGIVPNKRFFLEALETF 475
M + I PN FF ++TF
Sbjct: 245 MVKRKIDPNVIFFTALIDTF 264
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 14/326 (4%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y +I + K+G+ LA+ L ++M D +YN +I K K + A
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC----KYKHMDDA 269
Query: 204 LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261
F KM KG+ KP++ TYN L+ + L ++ E + PD+ +N +
Sbjct: 270 FDLFNKMETKGI---KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326
Query: 262 MDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
+DA+ K G + E E + M KS C PD++ +N LI + K + ++ +VF+ +
Sbjct: 327 IDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 378
T+ ++I + +AR A+ VF++M + P +TY I + G C+ NV
Sbjct: 387 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN--ILLDGLCNNGNVET 444
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A +F+ + K + + T M+EA C G + LF + GV P+ TY +
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504
Query: 439 AYTKANMKELVQKLLKRMEQNGIVPN 464
+ + +KE L M+++G +PN
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPN 530
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 39/325 (12%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y+ LI+ + G+ A L S+M PD +NALI A + K L +A
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV----KEGKLVEA 339
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ +M + C P++V YN L++ + + V++ +F+E+ + L + TY ++
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+ + + V +M S+ PDI+T+N+L+D + VF+ + K
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
+ T+ +MI KA GK E ++F
Sbjct: 460 DIVTYTTMIEALCKA---GKVE--------------------------------DGWDLF 484
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
LS G V T M+ +C GL EAD LF G P+S TY L +A +
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 444 NMKELVQKLLKRMEQNGIVPNKRFF 468
+ +L+K M G + F
Sbjct: 545 GDEAASAELIKEMRSCGFAGDASTF 569
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/433 (22%), Positives = 175/433 (40%), Gaps = 46/433 (10%)
Query: 44 HRHIPLSLRTRPRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKY 103
HRH L L+ PRT +C W RS G S++ +E L R K
Sbjct: 14 HRHTVL-LKGNPRTTLC--W--ERSFAGASSDDC---------------RENLSR---KV 50
Query: 104 VKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRL 163
++ ++ + LF ++ KS + +E +SKL++ + K + L
Sbjct: 51 LQDLKLDDAIGLFGDMVKSRPFPSIVE-----------------FSKLLSAIAKMNKFDL 93
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223
+ L +M+N G + Y+ I + ALA LG K+ P+IVT
Sbjct: 94 VISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALA-ILGKMMKLG----YGPSIVTL 148
Query: 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283
N LL + + AL ++ E PD T+ ++ ++ E +++ RM
Sbjct: 149 NSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVV 208
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343
C+PD++T+ +I+ KR D + + K + + +N++I K +
Sbjct: 209 KGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDD 268
Query: 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403
A +F KM P TY +I+ S A + ++ + + + NA+++
Sbjct: 269 AFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALID 328
Query: 404 AYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 462
A+ G EA+ L+ E + PD Y L K + K E ++ + M Q G+V
Sbjct: 329 AFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 388
Query: 463 PNKRFFLEALETF 475
N + + F
Sbjct: 389 GNTVTYTTLIHGF 401
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 162/355 (45%), Gaps = 10/355 (2%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + D+ L +F M Y + IY+ +I + K Q A+ L + M
Sbjct: 157 LLNGFCRGDRVYDALYMFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD 215
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G PD YN+LI+ L + + + + K P++ T+N L+ AC +
Sbjct: 216 GIGPDVVTYNSLISG-LCSSGRWSDATRMVSCMTK----REIYPDVFTFNALIDACVKEG 270
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
V + ++E+ L PDI TY+ ++ + E E + M S C PD++T++
Sbjct: 271 RVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYS 330
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+LI+ Y K + + ++F + T+ +I Y +A AE +F++M
Sbjct: 331 ILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFC 390
Query: 355 KYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
P+ ITY + ++G CDN + +A I ++ K G D + T N ++ C G
Sbjct: 391 GVHPNIITYN--VLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVA 448
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 467
+A ++ + + G+ PD TY + K ++ L ++M+++GI+PN+ +
Sbjct: 449 DAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNECY 503
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 145/334 (43%), Gaps = 10/334 (2%)
Query: 131 VFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
++ W Q Q I + + L+ + Q LA+ +M G P + +L+
Sbjct: 101 IYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNG 160
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
+ + AL F +M GM KPN+V YN ++ +++ VD L + +
Sbjct: 161 FC----RGDRVYDALYMFDQMVGMGY-KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD 215
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309
+ PD+ TYN ++ +G + ++S M + PD+ TFN LID+ K +
Sbjct: 216 GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEA 275
Query: 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369
E+ ++ ++ P + T++ +I +AE +F M + P +TY +I
Sbjct: 276 EEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILIN- 334
Query: 370 YGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427
GYC + V ++F E+S+ G T +++ YC G A+ +F GV
Sbjct: 335 -GYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH 393
Query: 428 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
P+ TY +L E +L M++NG+
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKNGM 427
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 146/325 (44%), Gaps = 12/325 (3%)
Query: 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201
IAD +S+L++ + K + + ++L+ +M+ G + N L+ + L+
Sbjct: 81 IAD---FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC----RCSQLS 133
Query: 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261
AL + KM + +P+IVT+ LL + V +F ++ P++ YN +
Sbjct: 134 LALSFLGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTI 192
Query: 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
+D K+ + +L+RM+ + PD++T+N LI + ++ + +
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 379
P + TFN++I K +AE +++M P +TY +I YG C + A
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEA 310
Query: 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439
E+F + G V T + ++ YC + LF GV ++ TY +L +
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 370
Query: 440 YTKANMKELVQKLLKRMEQNGIVPN 464
Y +A + +++ +RM G+ PN
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPN 395
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 41/291 (14%)
Query: 213 MERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270
M +C+P +I ++ LL A ++ + D V L++++ + ++ T N +++ + +
Sbjct: 72 MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131
Query: 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330
+ S L +M +P I+TF L++ + + +F ++ KP + +N+
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191
Query: 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--------------- 375
+I K++ A + +M P +TY +I+ G C +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS--GLCSSGRWSDATRMVSCMTK 249
Query: 376 ----------------------VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
VS A E ++E+ + D + T + ++ CM E
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDE 309
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
A+ +F + G PD TY +L Y K+ E KL M Q G+V N
Sbjct: 310 AEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
D +F ++ + P++ F+ ++ K + Y++++M + + T
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425
++ + C +S A ++ KLG + + T ++L +C +A +F+ MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 485
P+ Y + K+ + LL RME++GI P+ + T++S ++G S
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPD-------VVTYNSLISGLCSS 234
Query: 486 SAKTDLTRSLST 497
+D TR +S
Sbjct: 235 GRWSDATRMVSC 246
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 31/369 (8%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
E F M +Q + DT +Y+ LI K+G R A F EM + PD Y A+I+
Sbjct: 337 EAFSEMIRQG-ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395
Query: 190 HLHTRDKAKA-------LAKAL------------GYFQ--KMKGMER---------CKPN 219
D +A K L GY + MK R C PN
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+VTY L+ + ++D N L E+ + L P+I+TYN +++ K+G I+E ++
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
++ D +T+ L+D+Y K DK +++ K ++ +PT+ TFN ++ +
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399
+ E + M A P+ T+ ++ Y +N+ A I+ ++ G T
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYE 635
Query: 400 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459
+++ +C EA LF+ G + STY +L K + K +++ +M +
Sbjct: 636 NLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
Query: 460 GIVPNKRFF 468
G+ +K F
Sbjct: 696 GLAADKEIF 704
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 157/348 (45%), Gaps = 9/348 (2%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
G+ DK + +EV K++ ++ IY +I ++ + + A FSEM G P
Sbjct: 294 FGELDKVWKLIEV----MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238
D VY LI R +A +K +F +M + P+++TY ++ Q ++ +
Sbjct: 350 DTVVYTTLIDGFCK-RGDIRAASK---FFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVE 404
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298
LF E+ L PD T+ +++ Y K G +K+ V + M C P+++T+ LID
Sbjct: 405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464
Query: 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358
K D ++ + +P + T+NS++ K+ +A + + A
Sbjct: 465 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 524
Query: 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
+TY ++ Y + +A+EI E+ G + T N ++ +C++G+ + + L
Sbjct: 525 DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 419 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 466
G+ P+++T+ L K Y N + + K M G+ P+ +
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 46/342 (13%)
Query: 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 219
+T A+ +F E G + + YN +I H + A L ++KG P+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVI--HFVCQLGRIKEAHHLLLLMELKGY---TPD 280
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+++Y+ ++ + +D+V L + + L P+ Y Y ++ + + E E S
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 340
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 321
M PD + + LID + KR + F MHS++
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQI 399
Query: 322 ------------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 363
+P TF +I Y KA A V M +P+ +TY
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Query: 364 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421
+I G C ++ A E+ E+ K+G + T N+++ C +G EA L
Sbjct: 460 TTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 422 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
G+ D+ TY L AY K+ + Q++LK M G+ P
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 147/347 (42%), Gaps = 6/347 (1%)
Query: 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR 177
+L +D ++Q ++ + K + +D ++ V+ G R A +F +M N G
Sbjct: 150 KLNVTDSFVQFFDLLVYTYKD--WGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLV 207
Query: 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237
N +T ++D K A A+ F++ + C N+ +YNI++ Q +
Sbjct: 208 LSVDSCNVYLTRL--SKDCYKT-ATAIIVFREFPEVGVCW-NVASYNIVIHFVCQLGRIK 263
Query: 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
+ + L + PD+ +Y+ V++ Y + G + ++ ++ MK KP+ + +I
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Query: 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357
+ + E+ F ++ P + ++I + K A F +M + T
Sbjct: 324 GLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT 383
Query: 358 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 417
P +TY II+ + ++ A ++F E+ G + T ++ YC G +A +
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 418 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ G +P+ TY L K + +LL M + G+ PN
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 296 LIDSYGKRQAF---DKMEQVFKSLMHS-----KEKPTLPTFNSMIINYGKARLQGKAEYV 347
LI S+ +R D Q F L+++ + F +++++G R +A V
Sbjct: 141 LISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR---EARRV 197
Query: 348 FQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406
F+KM S + +T + C + A +F E ++G V++ N ++ C
Sbjct: 198 FEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVC 257
Query: 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
G EA L G TPD +Y + Y + + V KL++ M++ G+ PN
Sbjct: 258 QLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 166/360 (46%), Gaps = 21/360 (5%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
LF G DK L K+ I D IY+ LI +KG +AM L +EM
Sbjct: 384 LFTRSGNLDKALMYFNSV----KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQA 233
GC D YN + LH K K L +A F +M ER P+ T IL+ +
Sbjct: 440 GCAMDVVTYNTI----LHGLCKRKMLGEADKLFNEMT--ERALFPDSYTLTILIDGHCKL 493
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
N+ LF+++ E + D+ TYN ++D +GK G I + + + M S + P I++
Sbjct: 494 GNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
++L+++ + + +V+ ++ KPT+ NSMI Y ++ E +KM +
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS 613
Query: 354 MKYTPSFITYECIITMYGYC--DNVSRA----REIFDELSKLGKDMKVSTLNAMLEAYCM 407
+ P I+Y +I YG+ +N+S+A +++ +E L D V T N++L +C
Sbjct: 614 EGFVPDCISYNTLI--YGFVREENMSKAFGLVKKMEEEQGGLVPD--VFTYNSILHGFCR 669
Query: 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 467
EA+++ GV PD STY + + + ++ M Q G P+ +F
Sbjct: 670 QNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 166/352 (47%), Gaps = 16/352 (4%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L K K+ + EVF M + D+ Y L+ KKG +FS+MR+ P
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLS-PDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP 373
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNV 236
D ++++++ L TR + L KAL YF +K G+ P+ V Y IL++ + +
Sbjct: 374 DLVCFSSMMS--LFTR--SGNLDKALMYFNSVKEAGL---IPDNVIYTILIQGYCRKGMI 426
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296
L E+ + A D+ TYN ++ K M+ E + + + M PD T +L
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTIL 486
Query: 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356
ID + K ++F+ + + + + T+N+++ +GK A+ ++ M + +
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
Query: 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEA 414
P+ I+Y ++ +++ A ++DE+ + K++K V N+M++ YC +G ++
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEM--ISKNIKPTVMICNSMIKGYCRSGNASDG 604
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM--EQNGIVPN 464
+ E + G PD +Y L + + L+K+M EQ G+VP+
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 181/404 (44%), Gaps = 19/404 (4%)
Query: 82 LVRVLMRSFSDKEPLVRTLNK-YVKVVRSEHCF-LLFEELGKSDKWLQCLEVFRWMQKQR 139
L+R++ RS + +V +L+ + ++ F LL ++ K + E F ++ +
Sbjct: 136 LLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKG 195
Query: 140 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 199
+ ++ + LI + + G LA ++ E+ SG + N ++ A L K +
Sbjct: 196 FTVSIDAC-NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA-LCKDGKMEK 253
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
+ L Q+ KG+ P+IVTYN L+ A + +++ L + +P +YTYN
Sbjct: 254 VGTFLSQVQE-KGV---YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYN 309
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
V++ K+G + + V + M + PD T+ L+ K+ + E+VF +
Sbjct: 310 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSR 369
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 377
P L F+SM+ + ++ KA F + P + Y +I GYC +S
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCRKGMIS 427
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
A + +E+ + G M V T N +L C + EAD LF + PDS T +L
Sbjct: 428 VAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILI 487
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481
+ K + +L ++M++ KR L+ + T+++ L G
Sbjct: 488 DGHCKLGNLQNAMELFQKMKE------KRIRLDVV-TYNTLLDG 524
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 156/323 (48%), Gaps = 15/323 (4%)
Query: 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKA 203
IY+ +I + A+ LF+EM N G RP+ YN+LI + D ++ L+
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ + PN+VT++ L+ A + + + L+ E+ + + PDI+TY+ +++
Sbjct: 318 IE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+ + + E + + M S C P+++T+N LI + K + D+ ++F+ +
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 381
T+ ++I + +AR A+ VF++M + P +TY I + G C+N V A
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS--ILLDGLCNNGKVETALV 487
Query: 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441
+F+ L + + + T N M+E C G + LF + GV P+ TY + +
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547
Query: 442 KANMKELVQKLLKRMEQNGIVPN 464
+ +KE L + M++ G +P+
Sbjct: 548 RKGLKEEADALFREMKEEGPLPD 570
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 136/311 (43%), Gaps = 44/311 (14%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 205
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 383
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
F+ M + C PN+VTYN L++ +A+ VD+ LF+E+ + L + TY ++ +
Sbjct: 384 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+ + V +M S+ PDI+T+++L+D + VF+ L SK +P +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
T+N MI KA GK E ++F
Sbjct: 502 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 526
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
LS G V T M+ +C GL EAD LF G PDS TY L +A+ +
Sbjct: 527 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586
Query: 446 KELVQKLLKRM 456
K +L++ M
Sbjct: 587 KAASAELIREM 597
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 147/324 (45%), Gaps = 5/324 (1%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y D+ ++ LI + + + A+ L M GC+PD Y ++ D +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD----I 237
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
AL +KM+ + +P +V YN ++ A +NV+ LF E+ + P++ TYN
Sbjct: 238 DLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ G + +LS M + P+++TF+ LID++ K + E+++ ++
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P + T++S+I + +A+++F+ M + P+ +TY +I + V
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
E+F E+S+ G T ++ + A ++F+ + GV PD TY +L
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 441 TKANMKELVQKLLKRMEQNGIVPN 464
E + + ++++ + P+
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPD 500
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 157/366 (42%), Gaps = 46/366 (12%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
+SKL++ + K + L + L +M+N G + Y+ LI + L+ AL
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC----RRSQLSLALAVL 139
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
KM + +P+IVT N LL + +L ++ E PD +T+N ++ +
Sbjct: 140 AKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 311
+ E +++ RM C+PD++T+ ++++ KR D KMEQ
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 312 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 349
+F + + +P + T+NS+I NYG+ A +
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 315
Query: 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
M K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 469
EA +FE + P+ TY L K + KA + +L + M Q G+V N +
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 470 EALETF 475
+ F
Sbjct: 436 TLIHGF 441
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 9/303 (2%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223
A+ L +M G +PD +N LI H R + A AL +KG C+P++VTY
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLI--HGLFRHNRASEAVALVDRMVVKG---CQPDLVTY 224
Query: 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283
I++ + ++D +L K++ + + P + YN ++DA + + ++ + M +
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343
+P+++T+N LI + ++ ++ K P + TF+++I + K +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344
Query: 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAM 401
AE ++ +M P TY +I + D + A+ +F+ + + KD V T N +
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTL 402
Query: 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
++ +C E LF G+ ++ TY L + +A + Q + K+M +G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 462 VPN 464
+P+
Sbjct: 463 LPD 465
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 4/260 (1%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+IV ++ LL A A+ D V +L +++ ++ ++YTY+ +++ + + + +V
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L++M +PDI+T N L++ + + ++ +P TFN++I +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 395
+A + +M P +TY ++ G C ++ A + ++ + + V
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVN--GLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
N +++A C +A LF N G+ P+ TY L + +LL
Sbjct: 257 VIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 316
Query: 456 MEQNGIVPNKRFFLEALETF 475
M + I PN F ++ F
Sbjct: 317 MIERKINPNVVTFSALIDAF 336
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 131 VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190
VF+ M + D YS L+ + G+ A+ +F ++ S PD YN +I
Sbjct: 453 VFKQMVSD-GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511
Query: 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250
KA + F + ++ KPN+VTY ++ + ++ +ALF+E+ E
Sbjct: 512 C----KAGKVEDGWDLFCSLS-LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 251 LAPDIYTYNGVMDAYGKNG-------MIKEMES 276
PD TYN ++ A+ ++G +I+EM S
Sbjct: 567 PLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 1/228 (0%)
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296
D VN LF ++ +S P I ++ ++ A K + S+ +M++ ++ T+++L
Sbjct: 64 DAVN-LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356
I+ + +R V +M +P + T NS++ + A + +M M Y
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416
P T+ +I + S A + D + G + T ++ C G A
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 417 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
L + + P Y + A L M+ GI PN
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 167/350 (47%), Gaps = 8/350 (2%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+F ++G+S W + L V M+ + D S +++ ++G R A F+E+++
Sbjct: 254 VFGKMGRS--WRKILGVLDEMRSKGLKF-DEFTCSTVLSACAREGLLREAKEFFAELKSC 310
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G P YNAL L KA +AL ++M+ C + VTYN L+ A +A
Sbjct: 311 GYEPGTVTYNAL----LQVFGKAGVYTEALSVLKEME-ENSCPADSVTYNELVAAYVRAG 365
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
+ + + + + + P+ TY V+DAYGK G E + MK C P+ T+N
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 425
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
++ GK+ ++M ++ + + P T+N+M+ G + VF++M +
Sbjct: 426 AVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSC 485
Query: 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
+ P T+ +I+ YG C + A +++ E+++ G + V+T NA+L A G
Sbjct: 486 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ + + + G P ++Y L+ + Y K ++++ R+++ I P+
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPS 595
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 162/404 (40%), Gaps = 75/404 (18%)
Query: 135 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 194
M ++ + + Y+ +I GK G+ A+ LF M+ +GC P+ YNA+++ L +
Sbjct: 376 MMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL-LGKK 434
Query: 195 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 254
++ + K L MK C PN T+N +L C VN +F+E+ PD
Sbjct: 435 SRSNEMIKMLC---DMKS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPD 490
Query: 255 IYTYNGVMDAYGKNG-------MIKEM----------------------------ESVLS 279
T+N ++ AYG+ G M EM E+V+S
Sbjct: 491 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 550
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKME---------QVFKSLMHSKE--------- 321
MKS KP +++L++ Y K + +E Q+F S M +
Sbjct: 551 DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCR 610
Query: 322 -----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 364
KP + FNSM+ + + + +AE + + + +P +TY
Sbjct: 611 ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYN 670
Query: 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424
++ MY +A EI L K + + N +++ +C GL EA +
Sbjct: 671 SLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730
Query: 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
G+ P TY YT M ++ +++ M +N PN+ F
Sbjct: 731 GIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 170/392 (43%), Gaps = 15/392 (3%)
Query: 85 VLMRSFSDKEPLVRTLNKYVKVVRSE----HCFLLFEELGKSDKWLQCLEVFRWMQKQRW 140
VL+ S + +PL L+++ V+SE L + L S W + + +F W+
Sbjct: 110 VLVNSIVE-QPLT-GLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSN 167
Query: 141 YIA---DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197
A D + + ++G++ Q +A L ++ D Y T LH +
Sbjct: 168 SGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAY----TTILHAYSRT 223
Query: 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIY 256
KA+ F++MK M P +VTYN++L + R+ ++ + E+ L D +
Sbjct: 224 GKYEKAIDLFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEF 282
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
T + V+ A + G+++E + + +KS +P +T+N L+ +GK + + V K +
Sbjct: 283 TCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEM 342
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376
+ T+N ++ Y +A +A V + MT P+ ITY +I YG
Sbjct: 343 EENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKE 402
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436
A ++F + + G T NA+L E + + + G +P+ +T+ +
Sbjct: 403 DEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTM 462
Query: 437 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
M + V ++ + M+ G P++ F
Sbjct: 463 LALCGNKGMDKFVNRVFREMKSCGFEPDRDTF 494
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 44/334 (13%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++ ++A+ G KG + +F EM++ G PD +N LI+A+ + A +K G
Sbjct: 459 WNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA-SKMYGEM 517
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
+ G C + TYN LL A A+ + + ++ P +Y+ ++ Y K
Sbjct: 518 TR-AGFNAC---VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 573
Query: 268 NGMIKEMESVLSRMKSNQC-----------------------------------KPDIIT 292
G +E + +R+K Q KPD++
Sbjct: 574 GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVI 633
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
FN ++ + + +D+ E + +S+ P L T+NS++ Y + KAE + + +
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Query: 353 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
+ P ++Y +I G+C + A + E+++ G + T N + Y G+
Sbjct: 694 KSQLKPDLVSYNTVIK--GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444
E + + E P+ T+K++ Y +A
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 23/276 (8%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y+ L+ + +KG R + S+M++ G +P + Y+ ++ + AK Y
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCY----------AKGGNYL 578
Query: 208 QKMKGMERCK---------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 258
G+ER + P+ + LL A + R + F + PD+ +
Sbjct: 579 ----GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIF 634
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
N ++ + +N M + E +L ++ + PD++T+N L+D Y +R K E++ K+L
Sbjct: 635 NSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK 694
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378
S+ KP L ++N++I + + L +A + +MT P TY ++ Y +
Sbjct: 695 SQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAE 754
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
++ + ++K T +++ YC G +EA
Sbjct: 755 IEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEA 790
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 163/341 (47%), Gaps = 16/341 (4%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L + + M+K + AD IY+ +I + A+ LF+EM N G RP+ YN+LI
Sbjct: 240 LSLLKKMEKGKIE-ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Query: 189 AHLHT---RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245
+ D ++ L+ + + PN+VT++ L+ A + + + L+ E
Sbjct: 299 CLCNYGRWSDASRLLSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
+ + + PDI+TY+ +++ + + + E + + M S C P+++T+N LI + K +
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
++ ++F+ + T+N++I +A A+ +F+KM + P ITY
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS- 469
Query: 366 IITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
I + G C + +A +F+ L K + + T N M+E C G + LF +
Sbjct: 470 -ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
GV P+ Y + + + +KE L + M+++G +PN
Sbjct: 529 KGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 140/319 (43%), Gaps = 44/319 (13%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 205
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 382
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
F+ M + C PN+VTYN L++ +A+ V++ LF+E+ + L + TYN ++
Sbjct: 383 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+ G + + +M S+ PDIIT+++L+D K +K VF+ L SK +P +
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
T+N MI KA GK E ++F
Sbjct: 501 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 525
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
LS G V M+ +C GL EAD LF G P+S TY L +A +
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585
Query: 446 KELVQKLLKRMEQNGIVPN 464
K +L+K M G V +
Sbjct: 586 KAASAELIKEMRSCGFVGD 604
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 46/355 (12%)
Query: 148 YSKLIAVMGK-----------------------------------KGQTRLAMWLFSEMR 172
++KL++ + K + Q LA+ + +M
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 173 NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232
G PD ++L+ + H K +++A+ +M ME +PN VT+N L+
Sbjct: 143 KLGYEPDIVTLSSLLNGYCH----GKRISEAVALVDQMFVMEY-QPNTVTFNTLIHGLFL 197
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
+ AL + PD++TY V++ K G I S+L +M+ + + D++
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 349
+ +ID+ + + +F + + +P + T+NS+I NYG+ A +
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 314
Query: 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
M K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
EA +FE + P+ TY L K + KA E +L + M Q G+V N
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 164/384 (42%), Gaps = 39/384 (10%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K +K+ + + MQ R D Y+ LI ++ Q LA+ + +M
Sbjct: 86 LLSAIAKMNKFDLVISLGERMQNLRISY-DLYSYNILINCFCRRSQLPLALAVLGKMMKL 144
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKA-------------------LGYFQKMKGMER 215
G PD ++L+ + H + ++A+A G F K E
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 216 -----------CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264
C+P++ TY ++ + ++D +L K++ + + D+ Y ++DA
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Query: 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324
+ + ++ + M + +P+++T+N LI + ++ ++ K P
Sbjct: 265 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 324
Query: 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 382
+ TF+++I + K +AE ++ +M P TY +I G+C D + A+ +
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHM 382
Query: 383 FDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
F+ + + KD V T N +++ +C E LF G+ ++ TY L +
Sbjct: 383 FELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 441 TKANMKELVQKLLKRMEQNGIVPN 464
+A ++ QK+ K+M +G+ P+
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPD 464
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 10/255 (3%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K K ++ +++ M K R D YS LI + A +F M +
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQ 232
C P+ YN LI KAK + + + F++M +G+ N VTYN L++ Q
Sbjct: 390 DCFPNVVTYNTLIKGFC----KAKRVEEGMELFREMSQRGL---VGNTVTYNTLIQGLFQ 442
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
A + D +FK++ + PDI TY+ ++D K G +++ V ++ ++ +PDI T
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352
+N++I+ K + +F SL KP + + +MI + + L+ +A+ +F++M
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562
Query: 353 AMKYTPSFITYECII 367
P+ TY +I
Sbjct: 563 EDGTLPNSGTYNTLI 577
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 13/282 (4%)
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L A+ F +M R P+IV +N LL A A+ D V +L + + ++ D+Y+YN
Sbjct: 61 LDDAVDLFGEMV-QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR--QAFDKMEQVFKS 315
+++ + + + +VL +M +PDI+T + L++ Y GKR +A ++Q+F
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV- 178
Query: 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 373
+ +P TFN++I +A + +M A P TY ++ G C
Sbjct: 179 ---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN--GLCKR 233
Query: 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433
++ A + ++ K + V +++A C +A LF N G+ P+ TY
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 434 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
L + +LL M + I PN F ++ F
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 40/200 (20%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K+ + + +E+FR M QR + +T Y+ LI + + G +A +F +M +
Sbjct: 401 LIKGFCKAKRVEEGMELFREMS-QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 459
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK-------------MKGM-------- 213
G PD Y+ L+ KAL Y QK ++GM
Sbjct: 460 GVPPDIITYSILLDGLCKYGKLEKALV-VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518
Query: 214 ----------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ KPN++ Y ++ + ++ +ALF+E+ E P+ TYN ++
Sbjct: 519 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 264 AYGKNG-------MIKEMES 276
A ++G +IKEM S
Sbjct: 579 ARLRDGDKAASAELIKEMRS 598
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 44/354 (12%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y ++ VM K GQT LAM L +M + D Y+ +I K +L A F
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC----KHGSLDNAFNLF 286
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
+M+ M+ NI+TYNIL+ A D L +++ + + P++ T++ ++D++ K
Sbjct: 287 NEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
G ++E E + M PD IT+ LID + K DK Q+ ++ P + T
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 328 FNSMIINYGKAR---------------------------LQGKAEY--------VFQKMT 352
FN +I Y KA +QG E +FQ+M
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 353 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
+ K P+ +TY+ I + G CDN +A EIF+++ K ++ + N ++ C
Sbjct: 466 SRKVPPNIVTYK--ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 523
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+A LF + GV P TY ++ K + L ++ME++G P+
Sbjct: 524 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 9/326 (2%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y +T +S LI + +G+ A+ L M G +PD N L+ + +A+A+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
KM C+PN VTY +L ++ L +++ E + D Y+
Sbjct: 214 L----LIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++D K+G + ++ + M+ +IIT+N+LI + +D ++ + ++ K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 378
P + TF+ +I ++ K +AE + ++M P ITY +I G+C +++ +
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID--GFCKENHLDK 386
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A ++ D + G D + T N ++ YC + LF GV D+ TY L +
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 439 AYTKANMKELVQKLLKRMEQNGIVPN 464
+ + + ++L + M + PN
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPN 472
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 6/290 (2%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + K K + E+ + M R DT Y+ LI K+ A + M +
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMI-HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
GC P+ +N LI + KA + L F+KM + + VTYN L++ +
Sbjct: 397 KGCDPNIRTFNILINGYC----KANRIDDGLELFRKMS-LRGVVADTVTYNTLIQGFCEL 451
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
++ LF+E+ + P+I TY ++D NG ++ + +++ ++ + DI +
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N++I D +F SL KP + T+N MI K +AE +F+KM
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403
+ P TY +I + + +++ ++ +EL + G + ST+ +++
Sbjct: 572 DGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347
P +I F+ L + K + +D + + K + L T + MI + + R A
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 348 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405
K+ + Y P+ IT+ +I G C VS A E+ D + ++G + T+N ++
Sbjct: 146 MGKIIKLGYEPNTITFSTLIN--GLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Query: 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
C++G EA LL + G P++ TY + K+ L +LL++ME+ I
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 115/258 (44%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P ++ ++ L A A+ + D V AL K++ +A ++YT + +++ + + + S
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
+ ++ +P+ ITF+ LI+ + ++ ++ KP L T N+++
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 397
+ + +A + KM P+ +TY ++ + + A E+ ++ + +
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
+ +++ C +G A LF G+T + TY +L + A + KLL+ M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 458 QNGIVPNKRFFLEALETF 475
+ I PN F +++F
Sbjct: 326 KRKINPNVVTFSVLIDSF 343
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 17/318 (5%)
Query: 164 AMWLFSEMRNSGCRPDPSV--YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPN 219
A+ LF +M +S RP P+V ++ L +A T+ D AL K + ++KG+ N
Sbjct: 72 AIDLFRDMIHS--RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM----ELKGIAH---N 122
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+ T +I++ + R + + ++ + P+ T++ +++ G + E ++
Sbjct: 123 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
RM KPD+IT N L++ + + ++ +P T+ ++ K+
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 397
A + +KM + Y II G C + + A +F+E+ G + T
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIID--GLCKHGSLDNAFNLFNEMEMKGITTNIIT 300
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
N ++ +C G + L + + P+ T+ +L ++ K ++L K M
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 458 QNGIVPNKRFFLEALETF 475
GI P+ + ++ F
Sbjct: 361 HRGIAPDTITYTSLIDGF 378
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + + + LE+F ++K + + D GIY+ +I M + A LF +
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSKMEL-DIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G +P YN +I K L++A F+KM+ + P+ TYNIL+RA
Sbjct: 537 KGVKPGVKTYNIMIGGLC----KKGPLSEAELLFRKMEE-DGHAPDGWTYNILIRAHLGD 591
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+ + L +EL + D T V+D + K +LS
Sbjct: 592 GDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDMLS 637
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 150/321 (46%), Gaps = 9/321 (2%)
Query: 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALAKA 203
G++ L +V+ G A+ FS+M+ P N L+ A L D K
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR---- 248
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+F+ M G +P + TYNI++ + +V+ LF+E+ L PD TYN ++D
Sbjct: 249 --FFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+GK G + + MK C+PD+IT+N LI+ + K + ++ + + KP
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
+ ++++++ + K + +A + M + P+ TY +I N+S A +
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
+E+ ++G + V T A+++ C EA+ LF GV P+ ++Y L + KA
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485
Query: 444 NMKELVQKLLKRMEQNGIVPN 464
+ +LL ++ GI P+
Sbjct: 486 KNMDRALELLNELKGRGIKPD 506
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 158/367 (43%), Gaps = 45/367 (12%)
Query: 137 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196
K R + DT Y+ +I GK G+ + F EM++ C PD YNALI K
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC----K 344
Query: 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256
L L ++++MKG KPN+V+Y+ L+ A + + Q + ++ L P+ Y
Sbjct: 345 FGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 403
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
TY ++DA K G + + + + M + +++T+ LID + + E++F +
Sbjct: 404 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 463
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 374
+ P L ++N++I + KA+ +A + ++ P + Y I +G C
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI--WGLCSLE 521
Query: 375 -----------------------------------NVSRAREIFDELSKLGKDMKVSTLN 399
N + + DE+ +L ++ V T
Sbjct: 522 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581
Query: 400 AMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458
+++ C N L ++A D S++ G+ +++ + + K N E L ++M Q
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641
Query: 459 NGIVPNK 465
G+VP++
Sbjct: 642 KGLVPDR 648
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 5/314 (1%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y+ +I M K+G A LF EM+ G PD YN++I K L + +F
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF----GKVGRLDDTVCFF 320
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
++MK M C+P+++TYN L+ + + ++E+ + L P++ +Y+ ++DA+ K
Sbjct: 321 EEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 379
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
GM+++ M+ P+ T+ LID+ K ++ ++ + + T
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+ ++I A +AE +F KM P+ +Y +I + N+ RA E+ +EL
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
G + + C A ++ G+ +S Y L AY K+
Sbjct: 500 GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPT 559
Query: 448 LVQKLLKRMEQNGI 461
LL M++ I
Sbjct: 560 EGLHLLDEMKELDI 573
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 2/218 (0%)
Query: 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308
++ P ++ + GM++E S+MK + P + N L+ + K D
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245
Query: 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368
+++ FK ++ + +PT+ T+N MI K A +F++M P +TY +I
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305
Query: 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVT 427
+G + F+E+ + + V T NA++ +C G LP + E N G+
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLK 364
Query: 428 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465
P+ +Y L A+ K M + K M + G+VPN+
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 100/246 (40%)
Query: 216 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275
C P ++ L +++ F ++ + P + NG++ + K G +++
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 247
Query: 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335
M +P + T+N++ID K + +F+ + P T+NSMI +
Sbjct: 248 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307
Query: 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395
GK F++M M P ITY +I + + E + E+ G V
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
+ + +++A+C G+ +A + + +G+ P+ TY L A K +L
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427
Query: 456 MEQNGI 461
M Q G+
Sbjct: 428 MLQVGV 433
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 115/301 (38%), Gaps = 45/301 (14%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y+ LI + + + A LF +M +G P+ + YNALI H KAK + +AL
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI----HGFVKAKNMDRALELL 495
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
++KG KP+++ Y + ++ + E+ E + + Y +MDAY K
Sbjct: 496 NELKG-RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLP 326
+G E +L MK + ++TF +LID K + K F + + +
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614
Query: 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------------------- 359
F +MI K A +F++M P
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674
Query: 360 --------FITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCM 407
+ Y ++ +C+ + +AR +E+ G + + +S L E C+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 734
Query: 408 N 408
+
Sbjct: 735 D 735
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 12/239 (5%)
Query: 265 YGKNGMIKEMESVLSRMKS----------NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 314
Y N ++KEM VLS+ N C P F+ L ++ Q F
Sbjct: 159 YDANSVLKEM--VLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFS 216
Query: 315 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 374
+ + P + N ++ + K + F+ M P+ TY +I
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276
Query: 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434
+V AR +F+E+ G T N+M++ + G + FE +M PD TY
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 336
Query: 435 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 493
L + K + + + M+ NG+ PN + ++ F Q+ D+ R
Sbjct: 337 ALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRR 395
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202
A++ IY+ L+ K G + L EM+ + LI K K ++K
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC----KNKLVSK 595
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
A+ YF ++ + N + ++ + V+ LF+++ + L PD Y +M
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
D K G + E ++ +M K D++ + L+
Sbjct: 656 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202
A+ I++ +I + K Q A LF +M G PD + Y +L+ + K + +
Sbjct: 611 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNF----KQGNVLE 666
Query: 203 ALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
AL KM GM K +++ Y L+ + + + + +E+ + PD
Sbjct: 667 ALALRDKMAEIGM---KLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCIS 723
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQ 285
V+ + + G I E + S + +Q
Sbjct: 724 VLKKHYELGCIDEAVELQSYLMKHQ 748
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 170/403 (42%), Gaps = 76/403 (18%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
EV+ M + DT YS LI+ K G+ A+ LF EM+++ +P +Y L+
Sbjct: 218 EVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGI 277
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
+ K + KAL F++MK C P + TY L++ +A VD+ +K++
Sbjct: 278 YF----KVGKVEKALDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD 332
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA---- 305
L PD+ N +M+ GK G ++E+ +V S M +C P ++++N +I + + +A
Sbjct: 333 GLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSE 392
Query: 306 ----FDKME----------------------QVFKSL-----MHSKEKPTLPT-FNSMII 333
FDKM+ +V K+L M K P P + S+I
Sbjct: 393 VSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452
Query: 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 393
GKA+ A +F+++ S Y +I +G C +S A ++F+E+ G
Sbjct: 453 ALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512
Query: 394 KVSTLNAMLEAYCMNGLPTEADLLFE-----------NSHNM------------------ 424
V NA++ G+ EA+ L NSHN+
Sbjct: 513 DVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMF 572
Query: 425 ------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
G+ PD TY L + A M E ++++ M+ G
Sbjct: 573 ETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGF 615
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 142/334 (42%), Gaps = 8/334 (2%)
Query: 130 EVFRWMQ---KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL 186
E++R +Q + + + S+L+ +G+ A+ +F + + C+P S YN++
Sbjct: 144 EMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203
Query: 187 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 246
I + K + +M C P+ +TY+ L+ + + D LF E+
Sbjct: 204 ILMLMQEGQHEKVHE----VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 247 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306
++ + P Y ++ Y K G +++ + MK C P + T+ LI GK
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366
D+ +K ++ P + N+++ GK + VF +M + TP+ ++Y +
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTV 379
Query: 367 I-TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425
I ++ +VS FD++ T + +++ YC +A LL E G
Sbjct: 380 IKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKG 439
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459
P + Y L A KA E +L K +++N
Sbjct: 440 FPPCPAAYCSLINALGKAKRYEAANELFKELKEN 473
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 14/341 (4%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM----RNSGCRPDPSVYN 184
++ F+W K+R + D Y LI + + RL ++ + RN+ P+V +
Sbjct: 110 IQFFKWAGKRRNFQHDCSTYMTLIRCL---EEARLYGEMYRTIQEVVRNTYVSVSPAVLS 166
Query: 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 244
L+ A +AK ++KAL F + KG +CKP TYN ++ Q ++V+ ++
Sbjct: 167 ELVKA----LGRAKMVSKALSVFYQAKG-RKCKPTSSTYNSVILMLMQEGQHEKVHEVYT 221
Query: 245 EL-HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 303
E+ +E PD TY+ ++ +Y K G + MK N +P + L+ Y K
Sbjct: 222 EMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281
Query: 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 363
+K +F+ + + PT+ T+ +I GKA +A ++ M TP +
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL 341
Query: 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEADLLFENSH 422
++ + G V +F E+ V + N +++A + +E F+
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK 401
Query: 423 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
V+P TY +L Y K N E LL+ M++ G P
Sbjct: 402 ADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 17/253 (6%)
Query: 130 EVFRWMQKQRWYIADTG-----IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184
EV W K + AD+ YS LI K + A+ L EM G P P+ Y
Sbjct: 392 EVSSWFDKMK---ADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYC 448
Query: 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT--YNILLRACAQARNVDQVNAL 242
+LI A KAK A F+++K N+ + Y ++++ + + + L
Sbjct: 449 SLINA----LGKAKRYEAANELFKELK---ENFGNVSSRVYAVMIKHFGKCGKLSEAVDL 501
Query: 243 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302
F E+ PD+Y YN +M K GMI E S+L +M+ N C+ DI + N++++ + +
Sbjct: 502 FNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFAR 561
Query: 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362
+ ++F+++ HS KP T+N+++ + A + +A + ++M + IT
Sbjct: 562 TGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAIT 621
Query: 363 YECIITMYGYCDN 375
Y I+ G D+
Sbjct: 622 YSSILDAVGNVDH 634
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 7/177 (3%)
Query: 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 354
L+ + G+ + K VF K KPT T+NS+I+ + +G+ E V + T M
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQ---EGQHEKVHEVYTEMC 224
Query: 355 ---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411
P ITY +I+ Y A +FDE+ +L Y G
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
+A LFE G +P TY L K KA + K M ++G+ P+ F
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL 341
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 167/381 (43%), Gaps = 38/381 (9%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L + + W + L + W+ ++ Y Y+ ++ + + Q +A LF EMR P
Sbjct: 129 LSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAP 188
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKG-------------------------- 212
D Y+ LIT+ K AL + QKM+
Sbjct: 189 DRYTYSTLITSF----GKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKA 244
Query: 213 ---MERCK-----PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264
R K P++V YN ++ +A+ + L KE++E+ + P+ +Y+ ++
Sbjct: 245 ISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSV 304
Query: 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324
Y +N E SV + MK C D+ T N++ID YG+ + +++F SL +P
Sbjct: 305 YVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPN 364
Query: 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 384
+ ++N+++ YG+A L G+A ++F+ M + +TY +I +YG +A +
Sbjct: 365 VVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQ 424
Query: 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444
E+ G + T + ++ + G A LF+ + GV D Y+ + AY +
Sbjct: 425 EMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVG 484
Query: 445 MKELVQKLLKRMEQNGIVPNK 465
+ ++LL ++ +P +
Sbjct: 485 LMGHAKRLLHELKLPDNIPRE 505
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 7/308 (2%)
Query: 134 WMQK--QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191
W+QK Q D +YS LI + + A+ +FS ++ SG PD YN++I +
Sbjct: 212 WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY- 270
Query: 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 251
KAK +A ++M PN V+Y+ LL + + ++F E+ E
Sbjct: 271 ---GKAKLFREARLLIKEMNEAG-VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNC 326
Query: 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311
A D+ T N ++D YG+ M+KE + + ++ +P+++++N ++ YG+ + F +
Sbjct: 327 ALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIH 386
Query: 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371
+F+ + + + T+N+MI YGK KA + Q+M + P+ ITY II+++G
Sbjct: 387 LFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWG 446
Query: 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431
+ RA +F +L G ++ M+ AY GL A L P +
Sbjct: 447 KAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRET 506
Query: 432 TYKLLYKA 439
+L KA
Sbjct: 507 AITILAKA 514
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 9/336 (2%)
Query: 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201
+ +T YS L++V + + A+ +F+EM+ C D + N +I + + +
Sbjct: 292 LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY----GQLDMVK 347
Query: 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261
+A F ++ M+ +PN+V+YN +LR +A + LF+ + + ++ TYN +
Sbjct: 348 EADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTM 406
Query: 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
+ YGK ++ +++ M+S +P+ IT++ +I +GK D+ +F+ L S
Sbjct: 407 IKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGV 466
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381
+ + +MI+ Y + L G A+ + ++ P I E IT+ A
Sbjct: 467 EIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEATW 522
Query: 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441
+F + + G+ +S M+ Y N +FE G PDS+ ++ AY
Sbjct: 523 VFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYG 582
Query: 442 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477
K E + + M++ G V + L +SS
Sbjct: 583 KQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSS 618
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 173/380 (45%), Gaps = 51/380 (13%)
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
KS + +E+ R M+++ + D YS +I + K G A LF+EM G + D
Sbjct: 240 KSGQTALAMELLRKMEERNIKL-DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 298
Query: 181 SVYNALITAHLHT---RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237
YN LI + D AK L + + PN+VT+++L+ + + +
Sbjct: 299 ITYNTLIGGFCNAGRWDDGAKLLRDMIK--------RKISPNVVTFSVLIDSFVKEGKLR 350
Query: 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
+ + L KE+ + +AP+ TYN ++D + K ++E ++ M S C PDI+TFN+LI
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410
Query: 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357
+ Y K D ++F+ + T+N+++ + ++ A+ +FQ+M + +
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 358 PSFITYECIITMYGYCDN--VSRAREIFDEL--SKLGKDMKVSTL--------------- 398
P ++Y+ I + G CDN + +A EIF ++ SK+ D+ + +
Sbjct: 471 PDIVSYK--ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528
Query: 399 ------------------NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
N M+ C ++AD+LF G PD TY +L +A+
Sbjct: 529 DLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAH 588
Query: 441 TKANMKELVQKLLKRMEQNG 460
+ +L++ M+ +G
Sbjct: 589 LGDDDATTAAELIEEMKSSG 608
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 7/302 (2%)
Query: 159 GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CK 217
G+ A+ L M +G +P+ Y + L+ K+ A A+ +KM+ ER K
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPV----LNVMCKSGQTALAMELLRKME--ERNIK 260
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
+ V Y+I++ + ++D LF E+ DI TYN ++ + G + +
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L M + P+++TF++LIDS+ K + +Q+ K +M P T+NS+I + K
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 397
+A + M + P +T+ +I Y + + E+F E+S G T
Sbjct: 381 ENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVT 440
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
N +++ +C +G A LF+ + V PD +YK+L E ++ ++E
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500
Query: 458 QN 459
++
Sbjct: 501 KS 502
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 6/289 (2%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + K K + ++ + M QR +T Y+ LI K+ + A+ + M +
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMM-QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
GC PD +N LI + KA + L F++M + N VTYN L++ Q+
Sbjct: 397 KGCDPDIMTFNILINGYC----KANRIDDGLELFREMS-LRGVIANTVTYNTLVQGFCQS 451
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
++ LF+E+ + PDI +Y ++D NG +++ + +++ ++ + DI +
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
++I D +F SL K +N MI + KA+ +F+KMT
Sbjct: 512 MIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402
+ P +TY +I + D+ + A E+ +E+ G VST+ ++
Sbjct: 572 EGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVI 620
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 7/305 (2%)
Query: 175 GCRPDPSVYNALITAH-LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G PD ++N L+ L R +++AL +M M KP ++T N L+
Sbjct: 153 GYEPDTVIFNTLLNGLCLECR-----VSEALELVDRMVEMGH-KPTLITLNTLVNGLCLN 206
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
V L + E+ P+ TY V++ K+G +L +M+ K D + +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
+++ID K + D +F + K + T+N++I + A + + M
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
K +P+ +T+ +I + + A ++ E+ + G T N++++ +C E
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
A + + + G PD T+ +L Y KAN + +L + M G++ N + ++
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446
Query: 474 TFSSS 478
F S
Sbjct: 447 GFCQS 451
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 146/328 (44%), Gaps = 13/328 (3%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT I++ L+ + + + A+ L M G +P N L+ L K +
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNG-LCLNGK---V 209
Query: 201 AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 258
+ A+ +M G + PN VTY +L ++ L +++ E + D Y
Sbjct: 210 SDAVVLIDRMVETGFQ---PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
+ ++D K+G + ++ + M+ K DIIT+N LI + +D ++ + ++
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 376
K P + TF+ +I ++ K +A+ + ++M P+ ITY +I G+C + +
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID--GFCKENRL 384
Query: 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436
A ++ D + G D + T N ++ YC + LF GV ++ TY L
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 437 YKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ + ++ E+ +KL + M + P+
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 41/285 (14%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P ++ +N L A A+ + + V AL K++ +A IYT + +++ + + + S
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
+ ++ +PD + FN L++ + ++ ++ KPTL T N+++
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV---NG 202
Query: 338 ARLQGK---AEYVFQKMTAMKYTPSFITYECI---------------------------- 366
L GK A + +M + P+ +TY +
Sbjct: 203 LCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262
Query: 367 -----ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419
I + G C + + A +F+E+ G + T N ++ +C G + L
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 420 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+ ++P+ T+ +L ++ K +LLK M Q GI PN
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 307 DKMEQVFKSLMHSKEKPTLPTFN----------------------------------SMI 332
D +F+ ++ S+ PT+ FN S++
Sbjct: 70 DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129
Query: 333 IN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 389
IN + + R A K+ + Y P + + ++ G C VS A E+ D + ++
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLN--GLCLECRVSEALELVDRMVEM 187
Query: 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 449
G + TLN ++ C+NG ++A +L + G P+ TY + K+ L
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
Query: 450 QKLLKRMEQNGI 461
+LL++ME+ I
Sbjct: 248 MELLRKMEERNI 259
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
K+++ LE+FR M R IA+T Y+ L+ + G+ +A LF EM + RPD
Sbjct: 415 KANRIDDGLELFREMS-LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473
Query: 181 SVYNALITAHLHTRDKAKALAKALGYFQKMK-------------GM-------------- 213
Y L+ + KAL + G +K K GM
Sbjct: 474 VSYKILLDGLCDNGELEKAL-EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532
Query: 214 ----ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269
+ K + YNI++ + ++ + + LF+++ E APD TYN ++ A+ +
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDD 592
Query: 270 MIKEMESVLSRMKSNQCKPDIITFNLLID 298
++ MKS+ D+ T ++I+
Sbjct: 593 DATTAAELIEEMKSSGFPADVSTVKMVIN 621
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + + + LE+F ++K + + D GIY +I M + A LF +
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMEL-DIGIYMIIIHGMCNASKVDDAWDLFCSLPL 536
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G + D YN +I+ L +D +L+KA F+KM E P+ +TYNIL+RA
Sbjct: 537 KGVKLDARAYNIMIS-ELCRKD---SLSKADILFRKMTE-EGHAPDELTYNILIRAHLGD 591
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284
+ L +E+ S D+ T V++ + K +LS +++
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRAS 642
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 23/347 (6%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKA 197
Y + +Y+ LI + K G+ +A+ L +EM G D YN L+T ++ D A
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAA 231
Query: 198 KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256
+ L M+R P++VT+ L+ + N+D+ L+KE+ +S + P+
Sbjct: 232 RMLRDM---------MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
TYN +++ +G + + + M S C P+++T+N LI + K + D+ ++F+ +
Sbjct: 283 TYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342
Query: 317 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373
+ T+N++I Y GK R+ A +F M + + TP IT+ CI+ ++G C
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRV---ALDIFCWMVSRRVTPDIITH-CIL-LHGLC 397
Query: 374 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431
N + A FD++ + K + + N M+ C +A LF GV PD+
Sbjct: 398 VNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDAR 457
Query: 432 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
TY ++ K + +L++RM++ GI+ + LE SSS
Sbjct: 458 TYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSS 504
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 149/377 (39%), Gaps = 24/377 (6%)
Query: 88 RSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI 147
R+FSD +RT ++ +R E F LF E+ S ++
Sbjct: 33 RAFSDYREKLRT--GFLHSIRFEDAFALFFEMVHSQPLPSIVD----------------- 73
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
+++L+ + ++ +M G D + LI H + L+ AL
Sbjct: 74 FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILI----HCFCRCSRLSFALSVL 129
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
KM + +P+IVT+ LL + +L + +S P++ YN ++D K
Sbjct: 130 GKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK 188
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
NG + +L+ M+ D++T+N L+ + ++ + +M P + T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
F ++I + K +A+ ++++M P+ +TY II + A++ FD ++
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
G V T N ++ +C + E LF+ G D TY L Y +
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Query: 448 LVQKLLKRMEQNGIVPN 464
+ + M + P+
Sbjct: 369 VALDIFCWMVSRRVTPD 385
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 4/202 (1%)
Query: 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335
++ M +Q P I+ F L+ + + ++ + + + L +F +I +
Sbjct: 57 ALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCF 116
Query: 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 393
+ A V KM + Y PS +T+ + ++G+C + + A + + K G +
Sbjct: 117 CRCSRLSFALSVLGKMMKLGYEPSIVTFGSL--LHGFCLVNRIGDAFSLVILMVKSGYEP 174
Query: 394 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453
V N +++ C NG A L G+ D TY L + ++L
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234
Query: 454 KRMEQNGIVPNKRFFLEALETF 475
+ M + I P+ F ++ F
Sbjct: 235 RDMMKRSINPDVVTFTALIDVF 256
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 12/365 (3%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+ L S K Q +EV M ++ Y D Y+ LI + AM L EMR+
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQA 233
GC PD YN L+ K L +A+ + M C+PN++T+NI+LR+ C+
Sbjct: 269 GCTPDVVTYNVLVNGIC----KEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTG 323
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
R +D L ++ +P + T+N +++ + G++ +L +M + C+P+ +++
Sbjct: 324 RWMD-AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N L+ + K + D+ + + ++ P + T+N+M+ K A + ++++
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLP 411
+P ITY +I +A ++ DE+ KD+K T+ ++++ G
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR--AKDLKPDTITYSSLVGGLSREGKV 500
Query: 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 471
EA F MG+ P++ T+ + K+ + L M G PN+ +
Sbjct: 501 DEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTIL 560
Query: 472 LETFS 476
+E +
Sbjct: 561 IEGLA 565
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 167/378 (44%), Gaps = 26/378 (6%)
Query: 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG 175
F LGK+ K + LE+ + D Y+ +I+ K G+ A+ + M S
Sbjct: 147 FCRLGKTRKAAKILEILEG----SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS- 201
Query: 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQAR 234
PD YN ++ + D K L +A+ +M ++R C P+++TY IL+ A +
Sbjct: 202 --PDVVTYNTILRSLC---DSGK-LKQAMEVLDRM--LQRDCYPDVITYTILIEATCRDS 253
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
V L E+ + PD+ TYN +++ K G + E L+ M S+ C+P++IT N
Sbjct: 254 GVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHN 313
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+++ S + E++ ++ P++ TFN +I + L G+A + +KM
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH 373
Query: 355 KYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
P+ ++Y + ++G+C + RA E + + G + T N ML A C +G
Sbjct: 374 GCQPNSLSYNPL--LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
+A + + G +P TY + KA KLL M + P+ +
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY---- 487
Query: 473 ETFSSSLAGSQSGSAKTD 490
SSL G S K D
Sbjct: 488 ----SSLVGGLSREGKVD 501
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 5/325 (1%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y+ ++ + G+ + AM + M C PD Y LI A RD + A
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT--CRDSG--VGHA 258
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ +M+ C P++VTYN+L+ + +D+ ++ S P++ T+N ++
Sbjct: 259 MKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+ G + E +L+ M P ++TFN+LI+ ++ + + + + +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
++N ++ + K + +A ++M + P +TY ++T V A EI
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
++LS G + T N +++ G +A L + + PD+ TY L ++
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 444 NMKELVQKLLKRMEQNGIVPNKRFF 468
+ K E+ GI PN F
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTF 522
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 140/335 (41%), Gaps = 36/335 (10%)
Query: 137 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 193
+ R D Y+ L+ + K+G+ A+ ++M +SGC+P+ +N ++ + T
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325
Query: 194 RDKAKALA----------------------------KALGYFQKMKGMERCKPNIVTYNI 225
D K LA +A+ +KM C+PN ++YN
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMP-QHGCQPNSLSYNP 384
Query: 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285
LL + + +D+ + + PDI TYN ++ A K+G +++ +L+++ S
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345
C P +IT+N +ID K K ++ + KP T++S++ + +A
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504
Query: 346 YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLE 403
F + M P+ +T+ I M G C + RA + + G ++ ++E
Sbjct: 505 KFFHEFERMGIRPNAVTFNSI--MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Query: 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
G+ EA L N G+ SS ++ K
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGK 597
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 7/260 (2%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+I+ L+R + + + + L S PD+ TYN ++ Y K G I SV
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L RM + PD++T+N ++ S + +V ++ P + T+ +I +
Sbjct: 195 LDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 395
G A + +M TP +TY ++ G C + A + +++ G V
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSSGCQPNV 309
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
T N +L + C G +A+ L + G +P T+ +L + + +L++
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 456 MEQNGIVPNKRFFLEALETF 475
M Q+G PN + L F
Sbjct: 370 MPQHGCQPNSLSYNPLLHGF 389
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 16/349 (4%)
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
KS + +E+ R M++++ + D YS +I + K G A LF+EM G + D
Sbjct: 224 KSGQTALAMELLRKMEERKIKL-DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282
Query: 181 SVYNALITAHLHT---RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237
+Y LI + D AK L + + P++V ++ L+ + +
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMI--------KRKITPDVVAFSALIDCFVKEGKLR 334
Query: 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
+ L KE+ + ++PD TY ++D + K + + +L M S C P+I TFN+LI
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394
Query: 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357
+ Y K D ++F+ + T+N++I + + A+ +FQ+M + +
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 358 PSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415
P ++Y+ I + G CDN +A EIF+++ K ++ + N ++ C +A
Sbjct: 455 PDIVSYK--ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512
Query: 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
LF + GV PD TY ++ K L ++ME++G PN
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 49/341 (14%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+W ++ R M K R D +S LI K+G+ R A L EM G PD Y
Sbjct: 297 RWDDGAKLLRDMIK-RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTY 355
Query: 184 NALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNA 241
+LI K L KA M KG C PNI T+NIL+ +A +D
Sbjct: 356 TSLIDGFC----KENQLDKANHMLDLMVSKG---CGPNIRTFNILINGYCKANLIDDGLE 408
Query: 242 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301
LF+++ + D TYN ++ + + G ++ + + M S + +PDI+++ +L+D
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468
Query: 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 361
+K ++F+ + SK + + +N
Sbjct: 469 DNGEPEKALEIFEKIEKSKMELDIGIYN-------------------------------- 496
Query: 362 TYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419
I ++G C+ V A ++F L G V T N M+ C G +EADLLF
Sbjct: 497 -----IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFR 551
Query: 420 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
G +P+ TY +L +A+ KL++ +++ G
Sbjct: 552 KMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 146/331 (44%), Gaps = 19/331 (5%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT +S LI + +G+ A+ L M G +P NAL+ L K +
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG-LCLNGK---V 193
Query: 201 AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 258
+ A+ +M G + PN VTY +L+ ++ L +++ E + D Y
Sbjct: 194 SDAVLLIDRMVETGFQ---PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
+ ++D K+G + ++ + M+ K DII + LI + +D ++ + ++
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 319 SKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 373
K P + F+++I + GK R +AE + ++M +P +TY +I G+C
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLR---EAEELHKEMIQRGISPDTVTYTSLID--GFCKE 365
Query: 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433
+ + +A + D + G + T N ++ YC L + LF GV D+ TY
Sbjct: 366 NQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTY 425
Query: 434 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
L + + + E+ ++L + M + P+
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 271 IKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
IKE ++V M ++ +P +I F+ L + + +D + + K + L T
Sbjct: 51 IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110
Query: 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 386
+ MI + R A K+ + Y P +T+ +I G C VS A E+ D +
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLIN--GLCLEGRVSEALELVDRM 168
Query: 387 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446
++G + TLNA++ C+NG ++A LL + G P+ TY + K K+
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228
Query: 447 ELVQKLLKRMEQNGI 461
L +LL++ME+ I
Sbjct: 229 ALAMELLRKMEERKI 243
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 125/314 (39%), Gaps = 9/314 (2%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223
A+ LF EM S RP P + + + R K L L ++KG+ N+ T
Sbjct: 56 AVDLFQEMTRS--RPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH---NLYTL 110
Query: 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283
+I++ C + R + + ++ + PD T++ +++ G + E ++ RM
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343
KP +IT N L++ + ++ + +P T+ ++ K+
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230
Query: 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 401
A + +KM K + Y II G C + + A +F+E+ G + +
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIID--GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288
Query: 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
+ +C G + L + +TPD + L + K ++L K M Q GI
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348
Query: 462 VPNKRFFLEALETF 475
P+ + ++ F
Sbjct: 349 SPDTVTYTSLIDGF 362
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + + + LE+F ++K + + D GIY+ +I M + A LF +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMEL-DIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
G +PD YN +I K +L++A F+KM+ + PN TYNIL+RA
Sbjct: 521 KGVKPDVKTYNIMIGGLC----KKGSLSEADLLFRKME-EDGHSPNGCTYNILIRAHLGE 575
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+ + L +E+ + D T V+D + K +LS
Sbjct: 576 GDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDMLS 621
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 44/358 (12%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y ++ + K+G T LA L ++M P +YN +I K K + A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC----KYKHMDDA 275
Query: 204 LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261
L F++M KG+ +PN+VTY+ L+ + L ++ E + PD++T++ +
Sbjct: 276 LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321
+DA+ K G + E E + M P I+T++ LI+ + D+ +Q+F+ ++
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381
P + T+N++I + K + + VF++M+ + +TY +I + A+E
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE-----------NSHNM------ 424
IF E+ G + T N +L+ C NG +A ++FE ++N+
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 425 ------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
GV PD Y + + + KE L K M+++G +PN
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 5/313 (1%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
YS LI+ + G+ A L S+M PD ++ALI A + K L +A +
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV----KEGKLVEAEKLY 349
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
+M P+IVTY+ L+ +D+ +F+ + PD+ TYN ++ + K
Sbjct: 350 DEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 408
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
++E V M + +T+N+LI + D +++FK ++ P + T
Sbjct: 409 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+N+++ K KA VF+ + K P+ TY +I V ++F LS
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 528
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
G V N M+ +C G EAD LF+ G P+S Y L +A + +E
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 588
Query: 448 LVQKLLKRMEQNG 460
+L+K M G
Sbjct: 589 ASAELIKEMRSCG 601
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
+SKL++ + K + + + L +M+N G + Y+ LI ALA LG
Sbjct: 84 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA-VLGKM 142
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
K+ G E PNIVT + LL ++ + + AL ++ + P+ T+N ++
Sbjct: 143 MKL-GYE---PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
+ E +++ RM + C+PD++T+ ++++ KR D + + K +P +
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---YGYCDNVSR------ 378
+N++I K + A +F++M P+ +TY +I+ YG + SR
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 379 --------------------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
A +++DE+ K D + T ++++ +CM+
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
EA +FE + PD TY L K + K E ++ + M Q G+V N
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 16/234 (6%)
Query: 109 SEHCF-------LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQT 161
S+HCF L + K + + +EVFR M QR + +T Y+ LI + + G
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMS-QRGLVGNTVTYNILIQGLFQAGDC 447
Query: 162 RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221
+A +F EM + G P+ YN L+ KA+ Y Q+ K ME P I
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV-VFEYLQRSK-ME---PTIY 502
Query: 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281
TYNI++ +A V+ LF L + PD+ YN ++ + + G +E +++ M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 282 KSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332
K + P+ +N LI + G R+A ++ + +S + + T+ +M+
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L A+ F +M R P+I+ ++ LL A A+ D V +L +++ + + YTY+
Sbjct: 62 LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + + +VL +M +P+I+T + L++ Y + + + + +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 377
+P TFN++I +A + +M A P +TY ++ G C +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN--GLCKRGDTD 238
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
A + +++ + + V N +++ C +A LF+ G+ P+ TY L
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+LL M + I P+ F ++ F
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 156/331 (47%), Gaps = 4/331 (1%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
+S LI+ G+ G A+ +F+ M+ G RP+ YNA+I A + K +AK +F
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FF 327
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
+M+ +P+ +T+N LL C++ + LF E+ + D+++YN ++DA K
Sbjct: 328 DEMQ-RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
G + +L++M + P++++++ +ID + K FD+ +F + + +
Sbjct: 387 GGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+N+++ Y K +A + ++M ++ +TY ++ YG +++F E+
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
+ + T + +++ Y GL EA +F + G+ D Y L A K +
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566
Query: 448 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
L+ M + GI PN + ++ F S
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 166/361 (45%), Gaps = 11/361 (3%)
Query: 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTG-IYSKLIAVMGKKGQTRL 163
K+ S+ C + ELG ++ + + + + K+ + G + S +I+ +G+ G+ +
Sbjct: 192 KLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTI 251
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCKPNIV 221
A +F G ++ALI+A+ ++ +A+ F MK G+ +PN+V
Sbjct: 252 AKRIFETAFAGGYGNTVYAFSALISAY----GRSGLHEEAISVFNSMKEYGL---RPNLV 304
Query: 222 TYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280
TYN ++ AC + QV F E+ + + PD T+N ++ + G+ + ++
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340
M + + + D+ ++N L+D+ K D ++ + + P + +++++I + KA
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400
+A +F +M + ++Y ++++Y A +I E++ +G V T NA
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484
Query: 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
+L Y G E +F V P+ TY L Y+K + + ++ + + G
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Query: 461 I 461
+
Sbjct: 545 L 545
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 152/353 (43%), Gaps = 27/353 (7%)
Query: 125 WLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184
W +F M +R D Y+ L+ + K GQ LA + ++M P+ Y+
Sbjct: 355 WEAARNLFDEMTNRR-IEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413
Query: 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 244
+I KA +AL F +M+ + + V+YN LL + ++ + +
Sbjct: 414 TVIDGFA----KAGRFDEALNLFGEMRYLG-IALDRVSYNTLLSIYTKVGRSEEALDILR 468
Query: 245 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 304
E+ + D+ TYN ++ YGK G E++ V + MK P+++T++ LID Y K
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGG 528
Query: 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 364
+ + ++F+ + + + ++++I K L G A + +MT +P+ +TY
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588
Query: 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL-----NAMLEAY-------------- 405
II +G + R+ + + S +S L N +++ +
Sbjct: 589 SIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKD 648
Query: 406 CMNGLPTEADLL--FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456
C G+ + +L F H + + P+ T+ + A ++ N E LL+ +
Sbjct: 649 CEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 110/263 (41%), Gaps = 30/263 (11%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K + + +E+FR K AD +YS LI + K G A+ L EM
Sbjct: 520 LIDGYSKGGLYKEAMEIFREF-KSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKE 578
Query: 175 GCRPDPSVYNALITAHLH--TRDKAKALAK---------ALGYFQKMKGMERC----KPN 219
G P+ YN++I A T D++ + AL + +G +
Sbjct: 579 GISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLT 638
Query: 220 IVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 278
+ N + C + + + + +F+++H+ + P++ T++ +++A + ++ +L
Sbjct: 639 TESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLL 698
Query: 279 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF----NSMIIN 334
++ K + LL+ G+R+ Q ++ + T F M+ +
Sbjct: 699 EELRLFDNKVYGVVHGLLM---GQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWH 755
Query: 335 YGKAR------LQGKAEYVFQKM 351
+G+ R L+G++ V++ +
Sbjct: 756 FGQKRGAELVALEGRSRQVWENV 778
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 11/336 (3%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L + M Q + D ++ L+ + K G + A+ + M G PD YN++I+
Sbjct: 279 LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVIS 338
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
K + +A+ +M + C PN VTYN L+ + V++ L + L
Sbjct: 339 GLC----KLGEVKEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTS 393
Query: 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308
+ PD+ T+N ++ + + M+S C+PD T+N+LIDS + D+
Sbjct: 394 KGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDE 453
Query: 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368
+ K + S ++ T+N++I + KA +AE +F +M + + +TY +I
Sbjct: 454 ALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 369 MYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMG 425
G C + V A ++ D++ G+ T N++L +C G + AD++ + N G
Sbjct: 514 --GLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-G 570
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
PD TY L KA E+ KLL+ ++ GI
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 146/358 (40%), Gaps = 32/358 (8%)
Query: 140 WYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198
W I D ++ LI + + Q R A+ + +M + G PD + ++ ++ D
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242
Query: 199 AL-------------------------------AKALGYFQKMKGMERCKPNIVTYNILL 227
AL AL + Q+M + P+ T+N L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 228 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 287
+A +V + + + PD+YTYN V+ K G +KE VL +M + C
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347
P+ +T+N LI + K ++ ++ + L P + TFNS+I R A +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 348 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407
F++M + P TY +I + A + ++ G V T N +++ +C
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465
EA+ +F+ GV+ +S TY L K+ E +L+ +M G P+K
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 152/323 (47%), Gaps = 9/323 (2%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
+T Y+ LI+ + K+ Q A L + + G PD +N+LI TR+ A+
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME-- 421
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
F++M+ + C+P+ TYN+L+ + +D+ + K++ S A + TYN ++D
Sbjct: 422 --LFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
+ K +E E + M+ + + +T+N LID K + + Q+ ++ +KP
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383
T+NS++ ++ + KA + Q MT+ P +TY +I+ V A ++
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTK 442
+ G ++ N +++ TEA LF E PD+ +Y+++++
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
Query: 443 AN--MKELVQKLLKRMEQNGIVP 463
++E V L++ +E+ G VP
Sbjct: 659 GGGPIREAVDFLVELLEK-GFVP 680
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 128/331 (38%), Gaps = 44/331 (13%)
Query: 166 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225
W+ E G +PD YN ++ +L + L + + G+ KP++ T+N+
Sbjct: 143 WMIDEF---GLKPDTHFYNRML--NLLVDGNSLKLVEISHAKMSVWGI---KPDVSTFNV 194
Query: 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285
L++A +A + + +++ L PD T+ VM Y + G + + +M
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 286 CK------------------------------------PDIITFNLLIDSYGKRQAFDKM 309
C PD TFN L++ K
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314
Query: 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369
++ ++ P + T+NS+I K +A V +M +P+ +TY +I+
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374
Query: 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429
+ V A E+ L+ G V T N++++ C+ A LFE + G PD
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
Query: 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
TY +L + + +LK+ME +G
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 251 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310
+P+ Y ++ G++G +M+ +L MKS++C+ TF +LI+SY + + D++
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 311 QVFKSLM-------------------------------HSKE-----KPTLPTFNSMIIN 334
V ++ H+K KP + TFN +I
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 394
+A A + + M + P T+ ++ Y ++ A I +++ + G
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258
Query: 395 VSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453
++N ++ +C G +A + + E S+ G PD T+ L KA + +++
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318
Query: 454 KRMEQNGIVPN 464
M Q G P+
Sbjct: 319 DVMLQEGYDPD 329
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
G+ PD ST+ +L KA +A+ +L+ M G+VP+++ F ++ +
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 31/373 (8%)
Query: 108 RSEHCF-LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMW 166
R E+ + ++ +G+ K + + +F M + + G Y+ L+ V+ K A+
Sbjct: 268 RDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVG-YNTLMQVLAKGKMVDKAIQ 326
Query: 167 LFSEMRNSGCRPDPSVYNAL------------------ITAHLHTRDKAKALAKALGYFQ 208
+FS M +GCRP+ Y+ L I+ T+ L + L
Sbjct: 327 VFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLG 386
Query: 209 KMKGMERCKPNIVTYNI----------LLRACAQARNVDQVNALFKELHESILAPDIYTY 258
+ R ++ ++ + L C + ++ + L K +HE + D Y
Sbjct: 387 HVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK-IHEKGVVTDTMMY 445
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
N V A GK I + + +MK + PDI T+N+LI S+G+ D+ +F+ L
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELER 505
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378
S KP + ++NS+I GK +A F++M P +TY ++ +G + V
Sbjct: 506 SDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEM 565
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A +F+E+ G + T N +L+ NG EA L+ G+TPDS TY +L +
Sbjct: 566 AYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLER 625
Query: 439 AYTKANMKELVQK 451
+ ++ K +++
Sbjct: 626 LQSVSHGKSRIRR 638
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/435 (22%), Positives = 179/435 (41%), Gaps = 53/435 (12%)
Query: 84 RVLMRSFSDKEPLVRTLNKYVKVVRSEHCF------LLFEELGKSDKWLQCLEVFRWMQK 137
+ L++++ + + Y ++ R H +L + L K +K Q VF M+K
Sbjct: 207 KCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEKACQ---VFEDMKK 263
Query: 138 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197
R D Y+ +I MG+ G+ A+ LF+EM G + YN L + K
Sbjct: 264 -RHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTL----MQVLAKG 318
Query: 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 257
K + KA+ F +M C+PN TY++LL + +++ + E+ + + IY+
Sbjct: 319 KMVDKAIQVFSRMVETG-CRPNEYTYSLLLNLLVAEGQLVRLDGVV-EISKRYMTQGIYS 376
Query: 258 Y--------------------------NGVMDAY--------GKNGMIKEMESVLSRMKS 283
Y G D+Y G I+ +E +LS++
Sbjct: 377 YLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIE-MLSKIHE 435
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343
D + +N + + GK + + +F+ + P + T+N +I ++G+ +
Sbjct: 436 KGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDE 495
Query: 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403
A +F+++ P I+Y +I G +V A F E+ + G + V T + ++E
Sbjct: 496 AINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME 555
Query: 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463
+ A LFE G P+ TY +L K L +M+Q G+ P
Sbjct: 556 CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTP 615
Query: 464 NKRFF--LEALETFS 476
+ + LE L++ S
Sbjct: 616 DSITYTVLERLQSVS 630
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 15/344 (4%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR---DKA 197
Y D Y+ +I + K + A F E+ G RP+ Y AL+ ++ D A
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 257
+ L+ + ++ PN++TY+ LL A + V + LF+E+ + PDI T
Sbjct: 246 RLLSDMIK--------KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297
Query: 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317
Y+ +++ + I E + M S C D++++N LI+ + K + + ++F+ +
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357
Query: 318 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 375
T+N++I + +A KA+ F +M +P TY I + G CDN
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN--ILLGGLCDNGE 415
Query: 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 435
+ +A IF+++ K D+ + T ++ C G EA LF + G+ PD TY
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475
Query: 436 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479
+ + V+ L +M+Q G++ N + T S+ L
Sbjct: 476 MMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 519
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 141/303 (46%), Gaps = 9/303 (2%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIV 221
A+ L +M G +PD YNA+I + T K + A +F+++ KG+ +PN+V
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKT----KRVNDAFDFFKEIERKGI---RPNVV 226
Query: 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281
TY L+ + L ++ + + P++ TY+ ++DA+ KNG + E + + M
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286
Query: 282 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 341
PDI+T++ LI+ D+ Q+F ++ + ++N++I + KA+
Sbjct: 287 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346
Query: 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 401
+F++M+ + +TY +I + +V +A+E F ++ G + T N +
Sbjct: 347 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406
Query: 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
L C NG +A ++FE+ + D TY + + K E L + G+
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466
Query: 462 VPN 464
P+
Sbjct: 467 KPD 469
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 9/303 (2%)
Query: 164 AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221
A+ LFS+M S RP PS+ +N L++A + K + +LG ++ G+ + ++
Sbjct: 69 AIDLFSDMVKS--RPFPSIVDFNRLLSAIVKL--KKYDVVISLGKKMEVLGI---RNDLY 121
Query: 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281
T+NI++ V ++ ++ + PD T +++ + + + + S++ +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181
Query: 282 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 341
KPDI+ +N +IDS K + + FK + +P + T+ +++ +
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 401
A + M K TP+ ITY ++ + V A+E+F+E+ ++ D + T +++
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301
Query: 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461
+ C++ EA+ +F+ + G D +Y L + KA E KL + M Q G+
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361
Query: 462 VPN 464
V N
Sbjct: 362 VSN 364
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 10/239 (4%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L + K+ K L+ E+F M + D YS LI + + A +F M +
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQ 232
GC D YN LI KAK + + F++M +G+ N VTYN L++ Q
Sbjct: 325 GCLADVVSYNTLINGFC----KAKRVEDGMKLFREMSQRGLV---SNTVTYNTLIQGFFQ 377
Query: 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292
A +VD+ F ++ ++PDI+TYN ++ NG +++ + M+ + DI+T
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVT 437
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351
+ +I K ++ +F SL KP + T+ +M+ L + E ++ KM
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 16/263 (6%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L L S +W + M K++ + YS L+ K G+ A LF EM
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 175 GCRPDPSVYNALITA-HLHTR-DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRAC 230
PD Y++LI LH R D+A + F M KG C ++V+YN L+
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQM------FDLMVSKG---CLADVVSYNTLINGF 340
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
+A+ V+ LF+E+ + L + TYN ++ + + G + + + S+M PDI
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
T+N+L+ +K +F+ + + + T+ ++I K +A +F
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460
Query: 351 MTAMKYTPSFITYECIITMYGYC 373
++ P +TY + M G C
Sbjct: 461 LSLKGLKPDIVTYTTM--MSGLC 481
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347
P I+ FN L+ + K + +D + + K + + L TFN +I + A +
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 348 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405
KM + Y P +T ++ G+C + VS A + D++ ++G + NA++++
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465
C +A F+ G+ P+ TY L ++ +LL M + I PN
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260
Query: 466 RFFLEALETF 475
+ L+ F
Sbjct: 261 ITYSALLDAF 270
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 7/186 (3%)
Query: 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 370
+F ++ S+ P++ FN ++ K + + +KM + T+ +I +
Sbjct: 71 DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130
Query: 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430
C VS A I ++ KLG + T+ +++ +C ++A L + +G PD
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190
Query: 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 490
Y + + K K +E+ GI PN + T+++ + G + S +D
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN-------VVTYTALVNGLCNSSRWSD 243
Query: 491 LTRSLS 496
R LS
Sbjct: 244 AARLLS 249
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 163/333 (48%), Gaps = 7/333 (2%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y+ L+ + ++ + L S++ +G +PD ++NA+I A ++ L +A+ F
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS----SESGNLDQAMKIF 412
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 266
+KMK CKP T+N L++ + +++ + L L + +L P+ T N ++ A+
Sbjct: 413 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 325
I+E +++ +M+S KPD++TFN L +Y + + E + ++H+K KP +
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
T +++ Y + +A F +M + P+ + +I + +++ E+ D
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
+ + G V T + ++ A+ G + ++ + G+ PD + +L K Y +A
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651
Query: 446 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
E +++L +M + G+ PN + + + + S+
Sbjct: 652 PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 684
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 12/326 (3%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
DT +++ +I + G AM +F +M+ SGC+P S +N LI + K L ++
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 443
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
M E +PN T NIL++A R +++ + ++ + PD+ T+N +
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAK 503
Query: 264 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 321
AY + G E ++ RM N+ KP++ T +++ Y + KME+ + KE
Sbjct: 504 AYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 560
Query: 322 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379
P L FNS+I + V M P +T+ ++ + ++ R
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620
Query: 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439
EI+ ++ + G D + + + + Y G P +A+ + GV P+ Y +
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680
Query: 440 YTKAN-MKELVQKLLKRMEQNGIVPN 464
+ A MK+ +Q K G+ PN
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPN 706
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 2/266 (0%)
Query: 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273
E KP+++TY L+ A + ++ + +L ++ ++ L PD +N +++A ++G + +
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQ 407
Query: 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMI 332
+ +MK + CKP TFN LI YGK ++ ++ ++ + +P T N ++
Sbjct: 408 AMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILV 467
Query: 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGK 391
+ R +A + KM + P +T+ + Y + A + I +
Sbjct: 468 QAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKV 527
Query: 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451
V T ++ YC G EA F +GV P+ + L K + N + V +
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 587
Query: 452 LLKRMEQNGIVPNKRFFLEALETFSS 477
++ ME+ G+ P+ F + +SS
Sbjct: 588 VVDLMEEFGVKPDVVTFSTLMNAWSS 613
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 142/329 (43%), Gaps = 40/329 (12%)
Query: 170 EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229
+M++ G +PD +N L A + R + A+ + + + + KPN+ T ++
Sbjct: 485 KMQSYGVKPDVVTFNTL--AKAYARIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 540
Query: 230 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 289
+ +++ F + E + P+++ +N ++ + + + V+ M+ KPD
Sbjct: 541 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 600
Query: 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 349
++TF+ L++++ + E+++ ++ P + F+ + Y +A KAE +
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 660
Query: 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
+M P+ + Y II+ + + +A +++ ++ +
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI-------------------- 700
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 469
+G++P+ +TY+ L + +A ++LLK ME +VP ++ +
Sbjct: 701 --------------VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK-TM 745
Query: 470 EALETFSSSLAGSQSGSAKTDLTRSLSTA 498
+ + S+ S S A T L S ST+
Sbjct: 746 QLIADGWKSIGVSNSNDANT-LGSSFSTS 773
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 6/242 (2%)
Query: 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
+ +++F L E P + TY ++ A + + S++S+++ N KPD I FN +I
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396
Query: 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 356
++ + D+ ++F+ + S KPT TFN++I YGK +L+ + + +
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456
Query: 357 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 413
P+ T C I + +C+ + A I ++ G V T N + +AY G T
Sbjct: 457 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTA 514
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
D++ + V P+ T + Y + E + RM++ G+ PN F ++
Sbjct: 515 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574
Query: 474 TF 475
F
Sbjct: 575 GF 576
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 6/217 (2%)
Query: 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 313
D+ + +M+ + G +E S+ + + KP +IT+ L+ + +++ F + +
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 314 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373
+ + KP FN++I ++ +A +F+KM P+ T+ +I YG
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 374 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430
+ + + D + L +M T N +++A+C EA + + GV PD
Sbjct: 438 GKLEESSRLLDMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495
Query: 431 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 466
T+ L KAY + + ++ RM N + PN R
Sbjct: 496 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVR 532
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D +S L + G+ A + ++MR G RP+ +Y +I+ A + KA
Sbjct: 635 DIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 690
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ ++KM G+ PN+ TY L+ +A+ + L K++ + P T + D
Sbjct: 691 MQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750
Query: 264 AYGKNGM 270
+ G+
Sbjct: 751 GWKSIGV 757
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 155/327 (47%), Gaps = 15/327 (4%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT---AHLHTRDKAKA 199
AD I++ +I + K A+ LF EM G RP+ Y++LI+ ++ D ++
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L+ + ++ PN+VT+N L+ A + + L+ ++ + + PDI+TYN
Sbjct: 318 LSDMIE--------KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + + + + + M S C PD++T+N LI + K + + ++F+ + H
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 429
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 377
T+ ++I A+ VF++M + P +TY I + G C+N +
Sbjct: 430 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS--ILLDGLCNNGKLE 487
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
+A E+FD + K + + M+E C G + LF + GV P+ TY +
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPN 464
+ + LLK+M+++G +PN
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPN 574
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 146/323 (45%), Gaps = 9/323 (2%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT ++ LI + + A+ L M GC+P+ Y ++ D AL
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
KM+ + + ++V +N ++ + + R+VD LFKE+ + P++ TY+
Sbjct: 246 ----NLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ G + +LS M + P+++TFN LID++ K F + E+++ ++
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 378
P + T+NS++ + KA+ +F+ M + P +TY +I G+C + V
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIK--GFCKSKRVED 418
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
E+F E+S G T +++ +G A +F+ + GV PD TY +L
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 439 AYTKANMKELVQKLLKRMEQNGI 461
E ++ M+++ I
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEI 501
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 17/307 (5%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 222
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227
Query: 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 282
Y +++ + + D L ++ + + D+ +N ++D+ K + + ++ M+
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 283 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
+ +P+++T++ LI SYG+ + Q+ ++ K P L TFN++I + K
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVST 397
+AE ++ M P TY ++ + D + +A+++F+ + + KD V T
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM--VSKDCFPDVVT 402
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
N +++ +C + + LF + G+ D+ TY L + + QK+ K+M
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 458 QNGIVPN 464
+G+ P+
Sbjct: 463 SDGVPPD 469
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 44/311 (14%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 205
++ LI K+G+ A L+ +M PD YN+L+ +H R DKAK +
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM----- 387
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
F+ M + C P++VTYN L++ +++ V+ LF+E+ L D TY ++
Sbjct: 388 -FEFMVSKD-CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+G + V +M S+ PDI+T+++L+D +K +VF + S+ K +
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
+ +MI KA GK V ++F
Sbjct: 506 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 530
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
LS G V T N M+ C L EA L + G P+S TY L +A+ +
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 446 KELVQKLLKRM 456
K +L++ M
Sbjct: 591 KAASAELIREM 601
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 46/355 (12%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++KL++ + K + + + L +M+ YN LI + ALA LG
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA-LLGKM 146
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 268 NGMIKEMESVLSRMKSNQCKPDIIT----------------------------------- 292
+ E +++ RM C+P+++T
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 349
FN +IDS K + D +FK + +P + T++S+I +YG+ A +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR---WSDASQLLS 319
Query: 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
M K P+ +T+ +I + A +++D++ K D + T N+++ +CM+
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 379
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+A +FE + PD TY L K + K+ E +L + M G+V +
Sbjct: 380 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 5/278 (1%)
Query: 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259
L A+G F M R P+IV +N LL A A+ + D V +L +++ + +YTYN
Sbjct: 66 LDDAIGLFGGMV-KSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319
+++ + + I ++L +M +P I+T + L++ Y + + ++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 377
+P TF ++I +A + +M P+ +TY ++ G C +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDTD 242
Query: 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437
A + +++ + V N ++++ C +A LF+ G+ P+ TY L
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302
Query: 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+LL M + I PN F ++ F
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
E+FR M R + DT Y+ LI + G A +F +M + G PD Y+ L+
Sbjct: 421 ELFREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
+ KAL + Y QK K +I Y ++ +A VD LF L
Sbjct: 480 LCNNGKLEKAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300
+ P++ TYN ++ +++E ++L +MK + P+ T+N LI ++
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 6/245 (2%)
Query: 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS--- 279
Y +LR +D LF + +S P I +N ++ A K +K+ + V+S
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAK---MKKFDVVISLGE 109
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
+M+ + + T+N+LI+ + +R + +M +P++ T +S++ Y +
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399
A + +M M Y P IT+ +I + S A + D + + G + T
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 400 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459
++ C G A L + D + + + K + L K ME
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 460 GIVPN 464
GI PN
Sbjct: 290 GIRPN 294
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + K + LEVF +MQK + D IY+ +I M K G+ LF +
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKL-DIYIYTTMIEGMCKAGKVDDGWDLFCSLSL 533
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229
G +P+ YN +I+ R L +A +KMK + PN TYN L+RA
Sbjct: 534 KGVKPNVVTYNTMISGLCSKR----LLQEAYALLKKMK-EDGPLPNSGTYNTLIRA 584
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 10/330 (3%)
Query: 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 206
IY+ LI KKG+ A LF EM G + Y LI K +
Sbjct: 200 IYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE----M 255
Query: 207 FQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
++KM+ + PN+ TYN ++ + C R D +F E+ E ++ +I TYN ++
Sbjct: 256 YEKMQ-EDGVFPNLYTYNCVMNQLCKDGRTKDAFQ-VFDEMRERGVSCNIVTYNTLIGGL 313
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+ + E V+ +MKS+ P++IT+N LID + K + + L P+L
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
T+N ++ + + A + ++M PS +TY +I + DN+ +A ++
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
+ +LG V T + ++ +C+ G EA LF++ P+ Y + Y K
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 446 KELVQKLLKRMEQNGIVPNK---RFFLEAL 472
KLLK ME+ + PN R+ +E L
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 10/315 (3%)
Query: 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL 186
Q E++ MQ+ + + Y+ ++ + K G+T+ A +F EMR G + YN L
Sbjct: 251 QGFEMYEKMQEDGVF-PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL 309
Query: 187 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 246
I + L +A +MK + PN++TYN L+ + + +L ++L
Sbjct: 310 IGGLC----REMKLNEANKVVDQMKS-DGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364
Query: 247 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306
L+P + TYN ++ + + G ++ M+ KP +T+ +LID++ +
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424
Query: 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366
+K Q+ S+ P + T++ +I + +A +F+ M P+ + Y +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 367 ITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424
I GYC S RA ++ E+ + V++ M+E C EA+ L E +
Sbjct: 485 I--LGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDS 542
Query: 425 GVTPDSSTYKLLYKA 439
G+ P +S L+ +A
Sbjct: 543 GIDPSTSILSLISRA 557
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 154/334 (46%), Gaps = 10/334 (2%)
Query: 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 206
+Y +I + L++ F+EM ++G P + +N L+T + + + + +
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVV----GSSSFNQWWSF 151
Query: 207 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266
F + K + ++ ++ IL++ C +A +++ L EL E +P++ Y ++D
Sbjct: 152 FNENK--SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCC 209
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 326
K G I++ + + M + T+ +LI+ K + ++++ + P L
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLY 269
Query: 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 384
T+N ++ K A VF +M + + +TY +I G C ++ A ++ D
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVD 327
Query: 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444
++ G + + T N +++ +C G +A L + + G++P TY +L + +
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 445 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
K++K ME+ GI P+K + ++TF+ S
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 19/326 (5%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 201
D IYS +I + K G A +LFSEM G P+ YN +I A+ L
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354
Query: 202 KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
+ + +ER P+++T+N L+ A + + + L E+ + PD TYN
Sbjct: 355 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ + K+ + + + M S PD++TFN +ID Y + + D+ Q+ + +
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 378
T+N++I + + A+ +FQ+M + P IT C I +YG+C+N +
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 520
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A E+F+ + D+ N ++ C EA LF + GV PD TY ++
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580
Query: 439 AYTKANMKELVQKLLKRMEQNGIVPN 464
+ + L +M+ NG P+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D Y ++ M K G T+ A+ L S+M + +PD +Y+A+I +D + A+
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 317
Query: 204 LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 260
L F +M KG+ PN+ TYN ++ C+ R D L +++ E + PD+ T+N
Sbjct: 318 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 371
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
++ A K G + E E + M PD +T+N +I + K FD + +F LM S
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 429
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 378
P + TFN++I Y +A+ + + ++++ + TY +I +G+C DN++
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 485
Query: 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438
A+++F E+ G T N +L +C N EA LFE + D+ Y ++
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545
Query: 439 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 490
K + + L + +G+ P+ ++T++ ++G SA +D
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 590
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++ LI + +G+ A L ++M G D Y ++ D AL
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 284
Query: 208 QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266
KM+ KP++V Y+ I+ R C + D LF E+ E +AP+++TYN ++D +
Sbjct: 285 SKMEE-THIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 342
Query: 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 326
G + + +L M + PD++TFN LI + K + E++ ++H P
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402
Query: 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386
T+NSMI + K A+++F M +P +T+ II +Y V ++ E+
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 387 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446
S+ G +T N ++ +C A LF+ + GV PD+ T +L + +
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 447 ELVQKLLKRMEQNGI 461
E +L + ++ + I
Sbjct: 519 EEALELFEVIQMSKI 533
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 138/341 (40%), Gaps = 53/341 (15%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+W + R M +R D ++ LI+ K+G+ A L EM + PD Y
Sbjct: 346 RWSDAQRLLRDMI-EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTY 404
Query: 184 NALITAHL-HTR-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA 241
N++I H R D AK + + P++VT+N ++ +A+ VD+
Sbjct: 405 NSMIYGFCKHNRFDDAKHMFDLMA-----------SPDVVTFNTIIDVYCRAKRVDEGMQ 453
Query: 242 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301
L +E+ L + TYN ++ + + + + + M S+ PD IT N+L+ +
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 513
Query: 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 361
+ + ++ ++F+ + SK +N
Sbjct: 514 ENEKLEEALELFEVIQMSKIDLDTVAYN-------------------------------- 541
Query: 362 TYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419
I ++G C V A ++F L G + V T N M+ +C ++A++LF
Sbjct: 542 -----IIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 596
Query: 420 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
+ G PD+STY L + KA + +L+ M NG
Sbjct: 597 KMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG 637
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 150/351 (42%), Gaps = 25/351 (7%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
++ F +M + R + +K+I V + + +A+ L+ +M + +N LI
Sbjct: 91 IDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVD---------- 237
L+ +L F K+ + +P++VT+N LL C + R +
Sbjct: 150 CFC----DCHKLSFSLSTFGKLTKLGF-QPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204
Query: 238 ----QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ ALF ++ E L P + T+N +++ G + E +++++M D++T+
Sbjct: 205 TGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTY 264
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
+++ K + + + KP + ++++I K A+Y+F +M
Sbjct: 265 GTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324
Query: 354 MKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411
P+ TY C+I G+C S A+ + ++ + + V T NA++ A G
Sbjct: 325 KGIAPNVFTYNCMID--GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382
Query: 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 462
EA+ L + + + PD+ TY + + K N + + + M +V
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVV 433
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM 171
C +L +++K + LE+F +Q + + DT Y+ +I M K + A LF +
Sbjct: 505 CNILLYGFCENEKLEEALELFEVIQMSKIDL-DTVAYNIIIHGMCKGSKVDEAWDLFCSL 563
Query: 172 RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231
G PD YN +I+ A++ A F KMK +P+ TYN L+R C
Sbjct: 564 PIHGVEPDVQTYNVMISGFC----GKSAISDANVLFHKMKDNGH-EPDNSTYNTLIRGCL 618
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+A +D+ L E+ + + D +T V D + K +LS
Sbjct: 619 KAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRLDKSFSDMLS 666
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 27/265 (10%)
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
A+ ++KM+ + R NI ++NIL++ + + F +L + PD+ T+N ++
Sbjct: 125 AISLYRKME-IRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLL 183
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
C D I+ L + Y F + +F ++
Sbjct: 184 HGL--------------------CLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223
Query: 323 PTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379
P + TFN++I L+G+ A + KM +TY I+ + A
Sbjct: 224 PVVITFNTLI---NGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280
Query: 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439
+ ++ + V +A+++ C +G ++A LF G+ P+ TY +
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 440 YTKANMKELVQKLLKRMEQNGIVPN 464
+ Q+LL+ M + I P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPD 365
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 363
++ D F ++ S+ T N +I + + A +++KM + + ++
Sbjct: 85 KSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSF 144
Query: 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
+I + C +S + F +L+KLG V T N +L C+ +EA LF
Sbjct: 145 NILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 13/316 (4%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++ +I + K G+ A + +M+ GC P+ YN LI + K + KA
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK-MYKADAVL 284
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
++M + PN+ T+NIL+ + N+ +FKE+ + + P++ +YN +++
Sbjct: 285 KEMVEND-VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCN 343
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
G I E S+ +M S +P++IT+N LI+ + K + +F S+ PT
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403
Query: 328 FNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 382
+N +I Y K GK + F ++M P TY C+I G C N+ A+++
Sbjct: 404 YNMLIDAYCKL---GKIDDGFALKEEMEREGIVPDVGTYNCLIA--GLCRNGNIEAAKKL 458
Query: 383 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442
FD+L+ G + T + ++E YC G +A +L + MG+ P TY ++ K Y K
Sbjct: 459 FDQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517
Query: 443 ANMKELVQKLLKRMEQ 458
+ + +ME+
Sbjct: 518 EGNLKAATNMRTQMEK 533
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 14/265 (5%)
Query: 205 GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264
GY+ CKP +++ + R+ D V ++KE+ + P+++T+N V++A
Sbjct: 180 GYYGYKLSALSCKP------LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINA 232
Query: 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---EQVFKSLMHSKE 321
K G + + V+ MK C P+++++N LID Y K KM + V K ++ +
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDV 292
Query: 322 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 379
P L TFN +I + K + VF++M P+ I+Y +I G C+ +S A
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLIN--GLCNGGKISEA 350
Query: 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439
+ D++ G + T NA++ +C N + EA +F + G P + Y +L A
Sbjct: 351 ISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDA 410
Query: 440 YTKANMKELVQKLLKRMEQNGIVPN 464
Y K + L + ME+ GIVP+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPD 435
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 7/252 (2%)
Query: 215 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY---GKNGMI 271
+ +PN+ T+N+++ A + +++ + +++ +P++ +YN ++D Y G NG +
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277
Query: 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331
+ ++VL M N P++ TFN+LID + K +VFK ++ KP + ++NS+
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 389
I +A + KM + P+ ITY +I G+C N + A ++F +
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN--GFCKNDMLKEALDMFGSVKGQ 395
Query: 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 449
G N +++AYC G + L E G+ PD TY L + E
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455
Query: 450 QKLLKRMEQNGI 461
+KL ++ G+
Sbjct: 456 KKLFDQLTSKGL 467
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 8/215 (3%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L K+D + L++F ++ Q + T +Y+ LI K G+ L EM
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQ-GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G PD YN LI R+ AK L KG+ P++VT++IL+ +
Sbjct: 431 GIVPDVGTYNCLIAGL--CRNGNIEAAKKLFDQLTSKGL----PDLVTFHILMEGYCRKG 484
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITF 293
+ L KE+ + L P TYN VM Y K G +K ++ ++M K + + ++ ++
Sbjct: 485 ESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASY 544
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
N+L+ Y ++ + + ++ P T+
Sbjct: 545 NVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 157 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 216
+KG++R A L EM G +P YN ++ + K L A +M+ R
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC----KEGNLKAATNMRTQMEKERRL 537
Query: 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276
+ N+ +YN+LL+ +Q ++ N L E+ E L P+ TY V + G + ++E
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597
Query: 277 VL 278
L
Sbjct: 598 HL 599
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR 177
+LGK D + ++ + D G Y+ LIA + + G A LF ++ + G
Sbjct: 413 KLGKIDDGF----ALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL- 467
Query: 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237
PD ++ L+ + + KA A L KM G+ KP +TYNI+++ + N+
Sbjct: 468 PDLVTFHILMEGYCRKGESRKA-AMLLKEMSKM-GL---KPRHLTYNIVMKGYCKEGNLK 522
Query: 238 QVNALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296
+ ++ E L ++ +YN ++ Y + G +++ +L+ M P+ IT+ ++
Sbjct: 523 AATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 154/361 (42%), Gaps = 53/361 (14%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 200
D +Y+ +I + K G A+ LF +M N G RPD +Y +L+ ++ RD L
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235
Query: 201 AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 258
+GM + KP+++T+N L+ A + L+ E+ +AP+I+TY
Sbjct: 236 ----------RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285
Query: 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318
+++ + G + E + M++ C PD++ + LI+ + K + D ++F +
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345
Query: 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378
T+ ++I +G+ A+ VF M + P+ TY ++ Y V +
Sbjct: 346 KGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKK 405
Query: 379 AREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFE---------------- 419
A IF+++ K D + T N +L C NG +A ++FE
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465
Query: 420 ------------NSHNM-------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
N+ N+ GV P+ TY + + +K L ++M+++G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Query: 461 I 461
+
Sbjct: 526 V 526
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 139/308 (45%), Gaps = 8/308 (2%)
Query: 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 219
Q LA +M G PD + +LI + +A+ +M M KP+
Sbjct: 122 QPYLASSFLGKMMKLGFEPDIVTFTSLINGFC----LGNRMEEAMSMVNQMVEMG-IKPD 176
Query: 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279
+V Y ++ + + +V+ +LF ++ + PD+ Y +++ +G ++ +S+L
Sbjct: 177 VVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLR 236
Query: 280 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
M + KPD+ITFN LID++ K F E+++ ++ P + T+ S+I +
Sbjct: 237 GMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEG 296
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399
+A +F M P + Y +I + C V A +IF E+S+ G T
Sbjct: 297 CVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYT 356
Query: 400 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT---KANMKELVQKLLKRM 456
+++ + G P A +F + + GV P+ TY +L K ++ + +++
Sbjct: 357 TLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR 416
Query: 457 EQNGIVPN 464
E +G+ PN
Sbjct: 417 EMDGVAPN 424
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 164/374 (43%), Gaps = 23/374 (6%)
Query: 97 VRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAV 154
VR Y +++R+ L F E L++F M + R I D ++KL+ V
Sbjct: 34 VRAFCNYREILRNGLHSLQFNE---------ALDLFTHMVESRPLPSIID---FTKLLNV 81
Query: 155 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 214
+ K + + + L ++ G D N L+ + A + LG K+ G E
Sbjct: 82 IAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLA-SSFLGKMMKL-GFE 139
Query: 215 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 274
P+IVT+ L+ +++ ++ ++ E + PD+ Y ++D+ KNG +
Sbjct: 140 ---PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 334
S+ +M++ +PD++ + L++ + + + + + K KP + TFN++I
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKD 392
+ K AE ++ +M M P+ TY +I G+C V AR++F + G
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN--GFCMEGCVDEARQMFYLMETKGCF 314
Query: 393 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 452
V +++ +C +A +F G+T ++ TY L + + + + Q++
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 453 LKRMEQNGIVPNKR 466
M G+ PN R
Sbjct: 375 FSHMVSRGVPPNIR 388
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 136/316 (43%), Gaps = 11/316 (3%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223
A+ LF+ M S RP PS+ + T L+ K K + ++ M ++ T
Sbjct: 56 ALDLFTHMVES--RPLPSIID--FTKLLNVIAKMKKFDVVINLCDHLQIMG-VSHDLYTC 110
Query: 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283
N+L+ Q+ ++ ++ + PDI T+ +++ + ++E S++++M
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 284 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARL 340
KPD++ + +IDS K + +F + + +P + + S++ N G+ R
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR- 229
Query: 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400
A+ + + MT K P IT+ +I + A E+++E+ ++ + T +
Sbjct: 230 --DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460
++ +CM G EA +F G PD Y L + K + K+ M Q G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 461 IVPNKRFFLEALETFS 476
+ N + ++ F
Sbjct: 348 LTGNTITYTTLIQGFG 363
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 110/275 (40%), Gaps = 44/275 (16%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
L + K K+L E++ M R IA + Y+ LI +G A +F M
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMI--RMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGM------------------ 213
GC PD Y +LI K K + A+ F +M KG+
Sbjct: 311 KGCFPDVVAYTSLINGFC----KCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG 366
Query: 214 --------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHE---SILAPDIY 256
PNI TYN+LL V + +F+++ + +AP+I+
Sbjct: 367 KPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIW 426
Query: 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316
TYN ++ NG +++ V M+ + IIT+ ++I K +F SL
Sbjct: 427 TYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSL 486
Query: 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351
KP + T+ +MI + L+ +A +F+KM
Sbjct: 487 PSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKM 521
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 16/361 (4%)
Query: 112 CFLLFEEL---GKSDKWLQCLEVFRWMQKQ--RWYIADTGIYSKLIAVMGKKGQTRLAMW 166
C +L L G+S K + E+F M ++ +W ++ L+ +G A+
Sbjct: 311 CAILITTLRKAGRSAK--EVWEIFEKMSEKGVKW---SQDVFGGLVKSFCDEGLKEEALV 365
Query: 167 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226
+ +EM G R + VYN L+ A+ +K+ + + G F +M+ + KP+ TYNIL
Sbjct: 366 IQTEMEKKGIRSNTIVYNTLMDAY----NKSNHIEEVEGLFTEMRD-KGLKPSAATYNIL 420
Query: 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES-VLSRMKSNQ 285
+ A A+ D V L +E+ + L P++ +Y ++ AYG+ + +M + RMK
Sbjct: 421 MDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVG 480
Query: 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345
KP ++ LI +Y +K F+ + KP++ T+ S++ + ++ GK
Sbjct: 481 LKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLM 540
Query: 346 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405
+++ M K + ITY ++ + AR++ E SK+G V T N ++ AY
Sbjct: 541 EIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAY 600
Query: 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465
G + L + + + PDS TY + A+ + + K M ++G VP+
Sbjct: 601 ARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDP 660
Query: 466 R 466
R
Sbjct: 661 R 661
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 160/361 (44%), Gaps = 7/361 (1%)
Query: 86 LMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADT 145
L ++ + + L L+ + + V C +G+S CL + WM Q +A
Sbjct: 179 LAKNLKENQTLGEMLSGFERRVSDTECVEALVMMGESGFVKSCLYFYEWMSLQEPSLASP 238
Query: 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 205
S L ++G++ + L S + + D +YNA I+ ++ A
Sbjct: 239 RACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISG----LSASQRYDDAWE 294
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNGVMDA 264
++ M + P+ VT IL+ +A R+ +V +F+++ E + + G++ +
Sbjct: 295 VYEAMDKI-NVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKS 353
Query: 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324
+ G+ +E + + M+ + + I +N L+D+Y K +++E +F + KP+
Sbjct: 354 FCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPS 413
Query: 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR-AREIF 383
T+N ++ Y + E + ++M + P+ +Y C+I+ YG +S A + F
Sbjct: 414 AATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAF 473
Query: 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443
+ K+G + A++ AY ++G +A FE G+ P TY + A+ ++
Sbjct: 474 LRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRS 533
Query: 444 N 444
Sbjct: 534 G 534
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 148/344 (43%), Gaps = 24/344 (6%)
Query: 55 PRTGICCVWTRPRSKRGRKSEELE-------------SKELVRVLMRSFSDK----EPLV 97
P C + K GR ++E+ S+++ L++SF D+ E LV
Sbjct: 306 PDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALV 365
Query: 98 RTLNKYVKVVRSEHCFL--LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVM 155
K +RS L + KS+ + +F M + + Y+ L+
Sbjct: 366 IQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEM-RDKGLKPSAATYNILMDAY 424
Query: 156 GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 215
++ Q + L EM + G P+ Y LI+A+ T+ + A A F +MK +
Sbjct: 425 ARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADA---FLRMKKVG- 480
Query: 216 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275
KP+ +Y L+ A + + ++ A F+E+ + + P + TY V+DA+ ++G ++
Sbjct: 481 LKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLM 540
Query: 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335
+ M + K IT+N L+D + K+ + + V +P++ T+N ++ Y
Sbjct: 541 EIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAY 600
Query: 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379
+ K + ++M A+ P ITY +I + + RA
Sbjct: 601 ARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRA 644
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 51/366 (13%)
Query: 138 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197
QR D Y ++ + K+G LA+ L ++M + + + ++N +I + K
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC----KY 271
Query: 198 KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 255
+ + A+ F +M KG+ +PN+VTYN L+ + L + E + P++
Sbjct: 272 RHVEVAVDLFTEMETKGI---RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV 328
Query: 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315
T+N ++DA+ K G + E E + M PD IT+NLLI+ + D+ +Q+FK
Sbjct: 329 VTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKF 388
Query: 316 LMHSKEKPTLPTFNSMIINYGKAR---------------------------LQG------ 342
++ P + T+N++I + K + +QG
Sbjct: 389 MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448
Query: 343 --KAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTL 398
A+ VF++M + + +TY I ++G C + A IF L K ++ +
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYS--ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506
Query: 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458
N M+E C G EA LF ++ + PD TY + + + L ++M++
Sbjct: 507 NTMIEGMCKAGKVGEAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563
Query: 459 NGIVPN 464
+G +PN
Sbjct: 564 DGTLPN 569
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 10/329 (3%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
Y DT ++ LI + + A+ L +M GC+PD Y ++ D +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260
AL KM+ R K N+V +N ++ + + R+V+ LF E+ + P++ TYN
Sbjct: 240 DLALNLLNKMEA-ARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298
Query: 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320
+++ G + +LS M + P+++TFN LID++ K + E++ + ++
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
P T+N +I + +A+ +F+ M + P+ TY +I + C V
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK-- 438
E+F E+S+ G T +++ + G A ++F+ + V D TY +L
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478
Query: 439 -AYTKANMKELVQKLLKR--MEQNGIVPN 464
+Y K + ++ K L++ ME N + N
Sbjct: 479 CSYGKLDTALVIFKYLQKSEMELNIFIYN 507
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 150/335 (44%), Gaps = 11/335 (3%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D YS I ++ Q LA+ + ++M G PD ++L+ + H+ K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
+ +M M KP+ T+ L+ + AL ++ + PD+ TY V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 323
K G I ++L++M++ + K +++ FN +IDS K + + +F + +P
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291
Query: 324 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380
+ T+NS+I NYG+ A + M K P+ +T+ +I + + A
Sbjct: 292 NVVTYNSLINCLCNYGR---WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
++ +E+ + D T N ++ +CM+ EA +F+ + P+ TY L +
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408
Query: 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
K E +L + M Q G+V N + ++ F
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 5/317 (1%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++KL++ + K + L + L +M+ G D Y+ I + L+ AL
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC----RRSQLSLALAVL 141
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
KM + +P+IVT + LL ++ + AL ++ E PD +T+ ++
Sbjct: 142 AKMMKLGY-EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
+ E +++ +M C+PD++T+ +++ KR D + + ++ K +
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
FN++I + K R A +F +M P+ +TY +I S A + +
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
+ + V T NA+++A+ G EA+ L E + PD+ TY LL + N +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 448 LVQKLLKRMEQNGIVPN 464
+++ K M +PN
Sbjct: 381 EAKQMFKFMVSKDCLPN 397
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 4/260 (1%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+IV +N LL A A+ + V +L +++ ++ D+YTY+ ++ + + + +V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L++M +PDI+T + L++ Y + + ++ KP TF ++I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 395
+A + +M P +TY ++ G C ++ A + +++ V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALNLLNKMEAARIKANV 258
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
N ++++ C A LF G+ P+ TY L +LL
Sbjct: 259 VIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSN 318
Query: 456 MEQNGIVPNKRFFLEALETF 475
M + I PN F ++ F
Sbjct: 319 MLEKKINPNVVTFNALIDAF 338
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 50/357 (14%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
Y ++ + K+G LA L ++M + D ++N +I + K + + AL F
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC----KYRHVDDALNLF 208
Query: 208 QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264
++M KG+ +PN+VTY+ L+ C+ R D + L ++ E + P++ T+N ++DA
Sbjct: 209 KEMETKGI---RPNVVTYSSLISCLCSYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDA 264
Query: 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324
+ K G E E + M PDI T+N LI+ + DK +Q+F+ ++ P
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 325 LPTFNSMIINYGKAR---------------------------LQG--------KAEYVFQ 349
L T+N++I + K++ +QG A+ VF+
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 350 KMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407
+M + P +TY I + G C+N + +A E+FD + K + + M+E C
Sbjct: 385 QMVSDGVPPDIMTYS--ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
G + LF + GV P+ TY + + + LLK+M+++G +P+
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 17/307 (5%)
Query: 164 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 222
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 99 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 152
Query: 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 282
Y +++ + ++D L ++ + + D+ +N ++D+ K + + ++ M+
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 212
Query: 283 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339
+ +P+++T++ LI SYG+ + Q+ ++ K P L TFN++I + K
Sbjct: 213 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269
Query: 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVST 397
+AE + M P TY +I + D + +A+++F+ + + KD + T
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM--VSKDCFPDLDT 327
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
N +++ +C + + LF + G+ D+ TY L + + QK+ K+M
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 458 QNGIVPN 464
+G+ P+
Sbjct: 388 SDGVPPD 394
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 153/349 (43%), Gaps = 9/349 (2%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++KL++ + K + L + L +M+ G + YN LI + ALA LG
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 71
Query: 208 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 72 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
+ E +++ RM C+P+++T+ ++++ KR D + + +K + +
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
FN++I + K R A +F++M P+ +TY +I+ S A ++ ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
+ + + T NA+++A+ G EA+ L ++ + PD TY L + + +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 448 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 496
+++ + M P+ L+ T S+ T+L R +S
Sbjct: 308 KAKQMFEFMVSKDCFPD----LDTYNTLIKGFCKSKRVEDGTELFREMS 352
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 44/311 (14%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 205
++ LI K+G+ A L +M PD YN+LI +H R DKAK +
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM----- 312
Query: 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
F+ M + C P++ TYN L++ +++ V+ LF+E+ L D TY ++
Sbjct: 313 -FEFMVSKD-CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Query: 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325
+G + V +M S+ PDI+T+++L+D +K +VF + S+ K +
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430
Query: 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385
+ +MI KA GK V ++F
Sbjct: 431 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 455
Query: 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445
LS G V T N M+ C L EA L + G PDS TY L +A+ +
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 446 KELVQKLLKRM 456
K +L++ M
Sbjct: 516 KAASAELIREM 526
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 4/260 (1%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P+I +N LL A A+ + D V +L +++ ++ ++YTYN +++ + + I ++
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L +M +P I+T + L++ Y + + ++ +P TF ++I
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 395
+A + +M P+ +TY ++ G C ++ A + +++ + V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEADV 185
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
N ++++ C +A LF+ G+ P+ TY L +LL
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245
Query: 456 MEQNGIVPNKRFFLEALETF 475
M + I PN F ++ F
Sbjct: 246 MIEKKINPNLVTFNALIDAF 265
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189
E+FR M R + DT Y+ LI + G A +F +M + G PD Y+ L+
Sbjct: 346 ELFREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Query: 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249
+ KAL + Y QK K +I Y ++ +A VD LF L
Sbjct: 405 LCNNGKLEKAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459
Query: 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300
+ P++ TYN ++ +++E ++L +MK + PD T+N LI ++
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%)
Query: 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375
++ S+ P++ FN ++ K + + +KM + + + TY +I +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 435
+S A + ++ KLG + + TL+++L YC ++A L + MG PD+ T+
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 436 LYKAYTKANMKELVQKLLKRMEQNGIVPN 464
L N L+ RM Q G PN
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPN 149
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
+L + L + K + LEVF +MQK + D IY+ +I M K G+ LF +
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKL-DIYIYTTMIEGMCKAGKVDDGWDLFCSLSL 458
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229
G +P+ YN +I+ R L +A +KMK + P+ TYN L+RA
Sbjct: 459 KGVKPNVVTYNTMISGLCSKR----LLQEAYALLKKMKE-DGPLPDSGTYNTLIRA 509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,307,983
Number of Sequences: 539616
Number of extensions: 6759434
Number of successful extensions: 53496
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 40403
Number of HSP's gapped (non-prelim): 5944
length of query: 500
length of database: 191,569,459
effective HSP length: 122
effective length of query: 378
effective length of database: 125,736,307
effective search space: 47528324046
effective search space used: 47528324046
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)