Query 010807
Match_columns 500
No_of_seqs 680 out of 2981
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.1E-58 6.7E-63 476.5 51.7 398 72-475 382-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.3E-58 5E-63 477.5 48.0 368 116-493 413-782 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-54 2.6E-59 447.1 36.8 382 71-483 98-480 (697)
4 PLN03081 pentatricopeptide (PP 100.0 7.7E-54 1.7E-58 441.1 41.8 365 111-492 89-453 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.4E-53 5.2E-58 447.7 39.1 365 116-490 159-650 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 7.1E-52 1.5E-56 436.6 42.2 407 62-486 154-678 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-22 5.8E-27 215.9 48.2 349 121-487 545-893 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 7.1E-22 1.5E-26 212.6 46.5 369 73-458 512-899 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.9E-21 6.3E-26 187.0 34.7 301 155-466 45-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.9E-21 6.3E-26 187.0 34.6 309 118-445 44-362 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.6E-23 177.2 43.9 354 106-476 39-398 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 3.3E-16 7.1E-21 159.9 47.2 338 115-459 166-571 (615)
13 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.9E-21 162.3 41.8 290 120-424 87-381 (656)
14 KOG4626 O-linked N-acetylgluco 99.8 1.1E-17 2.3E-22 156.0 29.0 350 115-482 122-507 (966)
15 PRK11447 cellulose synthase su 99.8 4.7E-16 1E-20 169.1 45.6 378 73-464 282-746 (1157)
16 PRK11447 cellulose synthase su 99.8 1.7E-15 3.7E-20 164.7 48.8 328 119-459 279-700 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.8 8.8E-16 1.9E-20 156.7 43.2 353 117-484 135-561 (615)
18 KOG4626 O-linked N-acetylgluco 99.8 1.1E-17 2.3E-22 156.0 25.7 360 69-447 125-507 (966)
19 PRK10049 pgaA outer membrane p 99.8 7.5E-14 1.6E-18 145.3 45.0 206 263-473 245-468 (765)
20 PRK10049 pgaA outer membrane p 99.8 6.6E-14 1.4E-18 145.8 43.3 387 85-488 23-450 (765)
21 KOG4422 Uncharacterized conser 99.7 2.4E-14 5.2E-19 128.3 33.4 307 142-459 204-551 (625)
22 PRK14574 hmsH outer membrane p 99.7 3.1E-13 6.8E-18 138.3 44.3 377 71-459 45-513 (822)
23 KOG4422 Uncharacterized conser 99.7 3E-14 6.4E-19 127.7 30.3 259 217-479 204-482 (625)
24 PRK09782 bacteriophage N4 rece 99.7 5.4E-12 1.2E-16 132.1 42.7 325 123-459 356-706 (987)
25 PRK14574 hmsH outer membrane p 99.7 1.2E-11 2.6E-16 126.9 44.2 384 91-488 48-507 (822)
26 PRK09782 bacteriophage N4 rece 99.7 1.7E-12 3.7E-17 135.7 38.1 341 73-431 389-745 (987)
27 PRK10747 putative protoheme IX 99.7 8.6E-13 1.9E-17 126.8 33.3 283 158-458 97-389 (398)
28 TIGR00540 hemY_coli hemY prote 99.6 6.3E-12 1.4E-16 121.5 35.2 227 227-457 160-397 (409)
29 PRK10747 putative protoheme IX 99.6 1.1E-11 2.3E-16 119.3 36.0 283 122-423 97-389 (398)
30 TIGR00540 hemY_coli hemY prote 99.6 3.1E-12 6.6E-17 123.7 32.3 291 121-423 96-398 (409)
31 PF13429 TPR_15: Tetratricopep 99.6 8.4E-15 1.8E-19 134.5 12.9 218 196-421 56-274 (280)
32 PF13429 TPR_15: Tetratricopep 99.6 7.7E-15 1.7E-19 134.8 12.0 256 196-458 20-276 (280)
33 KOG1126 DNA-binding cell divis 99.6 2.3E-12 5E-17 122.3 27.7 291 160-465 334-626 (638)
34 KOG2076 RNA polymerase III tra 99.6 5.4E-11 1.2E-15 116.7 37.8 350 122-482 152-543 (895)
35 COG2956 Predicted N-acetylgluc 99.6 1.6E-11 3.5E-16 106.6 29.5 289 159-459 49-347 (389)
36 KOG1155 Anaphase-promoting com 99.6 1.7E-11 3.7E-16 111.5 30.7 310 154-477 236-552 (559)
37 KOG2002 TPR-containing nuclear 99.6 3.8E-11 8.2E-16 118.6 34.8 340 112-460 310-746 (1018)
38 COG3071 HemY Uncharacterized e 99.6 8E-11 1.7E-15 105.5 33.6 292 158-464 97-395 (400)
39 COG2956 Predicted N-acetylgluc 99.6 2E-11 4.4E-16 106.0 28.6 285 182-479 38-329 (389)
40 KOG2076 RNA polymerase III tra 99.6 2.9E-10 6.4E-15 111.7 39.7 340 73-416 152-547 (895)
41 KOG1126 DNA-binding cell divis 99.6 4.8E-12 1E-16 120.2 26.6 283 124-425 334-621 (638)
42 KOG1155 Anaphase-promoting com 99.6 4.2E-10 9.1E-15 102.6 37.6 307 142-458 161-494 (559)
43 KOG2003 TPR repeat-containing 99.5 7.2E-11 1.6E-15 107.0 31.7 352 120-482 287-711 (840)
44 COG3071 HemY Uncharacterized e 99.5 5.2E-10 1.1E-14 100.4 35.1 291 122-428 97-394 (400)
45 KOG2003 TPR repeat-containing 99.5 4.4E-11 9.4E-16 108.4 28.3 361 123-493 215-688 (840)
46 PRK12370 invasion protein regu 99.4 2.1E-10 4.5E-15 115.3 29.6 271 179-460 255-536 (553)
47 KOG4318 Bicoid mRNA stability 99.4 1.7E-11 3.6E-16 119.7 18.8 270 134-445 15-286 (1088)
48 KOG0547 Translocase of outer m 99.4 1.4E-09 3.1E-14 99.8 29.7 221 233-459 339-566 (606)
49 TIGR02521 type_IV_pilW type IV 99.4 5.2E-10 1.1E-14 99.8 27.1 198 257-458 33-231 (234)
50 TIGR02521 type_IV_pilW type IV 99.4 5.5E-10 1.2E-14 99.7 26.9 202 218-423 29-231 (234)
51 KOG2002 TPR-containing nuclear 99.4 1.3E-08 2.8E-13 101.1 37.0 330 121-459 176-525 (1018)
52 PRK12370 invasion protein regu 99.4 2E-09 4.3E-14 108.3 32.3 270 143-425 254-536 (553)
53 KOG1129 TPR repeat-containing 99.4 4.8E-10 1E-14 97.7 22.9 229 184-424 227-458 (478)
54 KOG0495 HAT repeat protein [RN 99.4 3.7E-08 8E-13 93.8 36.4 326 117-458 524-879 (913)
55 PF13041 PPR_2: PPR repeat fam 99.3 3.6E-12 7.7E-17 82.5 6.9 50 218-267 1-50 (50)
56 KOG1915 Cell cycle control pro 99.3 2.6E-07 5.6E-12 85.0 39.2 325 123-460 188-537 (677)
57 KOG1129 TPR repeat-containing 99.3 8.3E-10 1.8E-14 96.3 21.1 237 217-459 220-458 (478)
58 KOG1173 Anaphase-promoting com 99.3 9.1E-09 2E-13 96.4 29.2 277 196-481 256-538 (611)
59 PF12569 NARP1: NMDA receptor- 99.3 1.8E-08 3.9E-13 98.2 32.6 295 117-423 12-333 (517)
60 PF13041 PPR_2: PPR repeat fam 99.3 9.8E-12 2.1E-16 80.4 6.9 50 253-302 1-50 (50)
61 KOG0495 HAT repeat protein [RN 99.3 5E-07 1.1E-11 86.4 40.7 342 123-480 420-768 (913)
62 KOG4318 Bicoid mRNA stability 99.3 3.2E-10 7E-15 111.0 19.0 274 166-481 11-287 (1088)
63 KOG1915 Cell cycle control pro 99.2 1.4E-07 3E-12 86.7 32.4 145 124-280 88-232 (677)
64 KOG1840 Kinesin light chain [C 99.2 4.4E-09 9.5E-14 101.2 23.4 199 223-421 244-476 (508)
65 PF12569 NARP1: NMDA receptor- 99.2 7.5E-08 1.6E-12 93.9 30.7 291 151-458 10-333 (517)
66 KOG1840 Kinesin light chain [C 99.2 2.4E-08 5.3E-13 96.1 26.8 244 214-457 193-477 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.2 9.3E-08 2E-12 88.1 28.3 219 198-425 40-266 (296)
68 KOG1173 Anaphase-promoting com 99.2 6.3E-08 1.4E-12 90.9 26.7 285 143-442 242-534 (611)
69 COG3063 PilF Tfp pilus assembl 99.1 1.6E-08 3.5E-13 84.3 20.1 197 257-457 37-234 (250)
70 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-07 2.3E-12 87.8 27.3 228 233-470 39-275 (296)
71 cd05804 StaR_like StaR_like; a 99.1 4.6E-07 1E-11 86.6 31.8 306 145-459 6-336 (355)
72 KOG2376 Signal recognition par 99.1 2.8E-06 6.1E-11 80.6 35.0 383 79-480 12-507 (652)
73 KOG1174 Anaphase-promoting com 99.1 1E-06 2.2E-11 79.8 30.6 285 126-424 213-500 (564)
74 KOG0547 Translocase of outer m 99.1 1.6E-07 3.4E-12 86.7 26.0 195 223-422 363-564 (606)
75 COG3063 PilF Tfp pilus assembl 99.1 2.5E-07 5.3E-12 77.4 23.6 199 222-424 37-236 (250)
76 KOG1156 N-terminal acetyltrans 99.0 8.4E-06 1.8E-10 78.3 35.0 322 123-461 89-470 (700)
77 KOG2047 mRNA splicing factor [ 99.0 3.1E-05 6.6E-10 74.4 37.9 357 93-464 154-583 (835)
78 cd05804 StaR_like StaR_like; a 99.0 5.3E-06 1.1E-10 79.3 32.9 295 123-423 20-335 (355)
79 KOG4162 Predicted calmodulin-b 99.0 4.6E-05 1E-09 74.8 38.3 335 115-459 329-783 (799)
80 KOG1174 Anaphase-promoting com 98.9 1.8E-05 4E-10 71.9 31.6 305 158-478 209-517 (564)
81 KOG4340 Uncharacterized conser 98.9 2.8E-06 6E-11 73.8 23.9 290 113-420 14-335 (459)
82 KOG3785 Uncharacterized conser 98.9 2.6E-05 5.6E-10 69.5 30.1 354 83-467 29-496 (557)
83 PF04733 Coatomer_E: Coatomer 98.9 2.1E-07 4.6E-12 84.6 18.0 246 197-459 14-265 (290)
84 KOG0548 Molecular co-chaperone 98.9 1.9E-05 4E-10 74.4 30.6 215 258-479 227-473 (539)
85 PRK04841 transcriptional regul 98.8 2.7E-05 5.8E-10 84.3 36.4 333 122-460 387-761 (903)
86 KOG2376 Signal recognition par 98.8 8.5E-05 1.8E-09 70.8 34.0 374 70-455 22-516 (652)
87 KOG4340 Uncharacterized conser 98.8 6.7E-06 1.5E-10 71.5 23.3 293 147-457 12-337 (459)
88 KOG1914 mRNA cleavage and poly 98.8 0.00016 3.6E-09 68.2 35.1 152 306-459 347-501 (656)
89 KOG1156 N-terminal acetyltrans 98.8 0.00013 2.8E-09 70.4 33.8 323 121-460 53-435 (700)
90 KOG1128 Uncharacterized conser 98.8 1.1E-06 2.4E-11 85.3 20.2 238 217-475 395-633 (777)
91 KOG2047 mRNA splicing factor [ 98.8 0.00023 4.9E-09 68.7 37.0 93 112-212 105-197 (835)
92 PF04733 Coatomer_E: Coatomer 98.8 4.2E-07 9.2E-12 82.6 16.2 149 264-423 111-264 (290)
93 KOG1070 rRNA processing protei 98.7 1.1E-05 2.3E-10 83.9 26.7 229 217-450 1455-1691(1710)
94 KOG1125 TPR repeat-containing 98.7 4E-06 8.7E-11 79.4 21.9 219 231-456 296-524 (579)
95 KOG1125 TPR repeat-containing 98.7 3.7E-06 7.9E-11 79.7 21.4 251 196-453 297-565 (579)
96 PLN02789 farnesyltranstransfer 98.7 2.6E-05 5.6E-10 72.0 26.7 221 231-457 48-300 (320)
97 KOG0985 Vesicle coat protein c 98.7 7.9E-05 1.7E-09 75.2 30.8 234 105-381 980-1241(1666)
98 KOG0624 dsRNA-activated protei 98.7 6.7E-05 1.5E-09 66.7 27.1 191 115-318 44-251 (504)
99 KOG1070 rRNA processing protei 98.7 1.2E-05 2.6E-10 83.6 25.3 241 254-498 1457-1704(1710)
100 PF12854 PPR_1: PPR repeat 98.7 3.2E-08 6.9E-13 57.4 4.0 31 391-421 3-33 (34)
101 PF12854 PPR_1: PPR repeat 98.7 3.4E-08 7.4E-13 57.2 4.1 32 215-246 2-33 (34)
102 PLN02789 farnesyltranstransfer 98.6 6.6E-05 1.4E-09 69.3 26.8 132 122-261 50-182 (320)
103 PRK04841 transcriptional regul 98.6 0.00021 4.5E-09 77.6 34.6 325 153-481 382-747 (903)
104 KOG1914 mRNA cleavage and poly 98.6 0.00046 9.9E-09 65.4 31.4 378 105-490 16-497 (656)
105 KOG3617 WD40 and TPR repeat-co 98.6 9.3E-05 2E-09 73.2 27.4 294 120-455 739-1105(1416)
106 KOG1128 Uncharacterized conser 98.6 3E-05 6.4E-10 75.7 23.0 205 196-423 410-615 (777)
107 TIGR03302 OM_YfiO outer membra 98.6 1.9E-05 4.1E-10 70.5 20.7 187 253-459 31-232 (235)
108 PRK14720 transcript cleavage f 98.6 4.8E-05 1E-09 78.4 25.6 270 143-475 29-300 (906)
109 KOG0985 Vesicle coat protein c 98.5 0.0001 2.2E-09 74.4 26.4 298 109-458 1048-1369(1666)
110 KOG4162 Predicted calmodulin-b 98.5 0.0013 2.7E-08 65.2 33.2 225 196-424 490-783 (799)
111 TIGR03302 OM_YfiO outer membra 98.5 2.8E-05 6E-10 69.5 21.0 189 217-424 30-232 (235)
112 PRK10370 formate-dependent nit 98.5 3.4E-05 7.3E-10 66.3 20.5 119 303-424 52-173 (198)
113 KOG3616 Selective LIM binding 98.5 9.4E-05 2E-09 72.2 24.4 137 227-385 739-875 (1636)
114 KOG3617 WD40 and TPR repeat-co 98.5 0.00029 6.3E-09 69.8 27.7 302 123-482 814-1188(1416)
115 PRK10370 formate-dependent nit 98.5 4E-05 8.6E-10 65.8 19.7 149 297-460 23-174 (198)
116 COG5010 TadD Flp pilus assembl 98.4 8.9E-05 1.9E-09 63.8 20.5 158 259-420 70-227 (257)
117 KOG3616 Selective LIM binding 98.4 0.00012 2.6E-09 71.5 23.2 284 150-475 620-931 (1636)
118 KOG3081 Vesicle coat complex C 98.4 0.0006 1.3E-08 58.8 24.7 243 197-457 21-269 (299)
119 COG5010 TadD Flp pilus assembl 98.4 7.9E-05 1.7E-09 64.1 19.5 157 294-454 70-226 (257)
120 COG4783 Putative Zn-dependent 98.4 0.00069 1.5E-08 63.6 27.1 212 196-432 249-461 (484)
121 PRK15359 type III secretion sy 98.4 3.3E-05 7.1E-10 62.7 16.2 95 328-424 27-121 (144)
122 KOG0548 Molecular co-chaperone 98.4 0.00057 1.2E-08 64.8 26.0 325 119-459 12-421 (539)
123 KOG3785 Uncharacterized conser 98.4 0.00084 1.8E-08 60.2 25.4 196 116-331 29-225 (557)
124 PRK15179 Vi polysaccharide bio 98.4 0.0003 6.5E-09 71.8 26.1 132 219-353 85-216 (694)
125 PRK15179 Vi polysaccharide bio 98.4 0.00034 7.4E-09 71.4 25.9 182 251-442 82-267 (694)
126 KOG3081 Vesicle coat complex C 98.3 0.00057 1.2E-08 59.0 22.6 118 227-354 115-236 (299)
127 PRK15359 type III secretion sy 98.3 7E-05 1.5E-09 60.8 16.8 96 293-390 27-122 (144)
128 PRK14720 transcript cleavage f 98.3 0.00051 1.1E-08 71.0 26.4 240 106-406 28-268 (906)
129 KOG0624 dsRNA-activated protei 98.3 0.0011 2.5E-08 59.2 24.9 281 95-390 53-371 (504)
130 KOG2053 Mitochondrial inherita 98.3 0.0063 1.4E-07 61.4 38.9 196 73-287 22-258 (932)
131 TIGR02552 LcrH_SycD type III s 98.3 6.1E-05 1.3E-09 60.6 14.9 97 361-459 18-114 (135)
132 KOG3060 Uncharacterized conser 98.2 0.0019 4.2E-08 55.4 22.8 189 232-424 24-220 (289)
133 TIGR02552 LcrH_SycD type III s 98.2 0.0001 2.2E-09 59.3 15.0 106 325-434 17-122 (135)
134 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 48.6 4.5 33 222-254 2-34 (35)
135 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.3E-10 48.4 4.6 33 432-464 2-34 (35)
136 PF13812 PPR_3: Pentatricopept 98.1 6.4E-06 1.4E-10 48.0 4.5 33 431-463 2-34 (34)
137 KOG1127 TPR repeat-containing 98.1 0.001 2.2E-08 67.6 22.1 150 124-283 507-658 (1238)
138 KOG3060 Uncharacterized conser 98.1 0.0042 9.2E-08 53.4 22.6 189 123-320 26-221 (289)
139 PF10037 MRP-S27: Mitochondria 98.1 7E-05 1.5E-09 71.0 13.5 124 355-478 61-186 (429)
140 COG4783 Putative Zn-dependent 98.1 0.0015 3.2E-08 61.4 21.6 230 125-389 219-454 (484)
141 PF13812 PPR_3: Pentatricopept 98.1 6.5E-06 1.4E-10 48.0 4.1 33 146-178 2-34 (34)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00047 1E-08 56.1 16.0 115 338-455 24-143 (145)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00055 1.2E-08 64.7 18.0 120 330-456 174-294 (395)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00065 1.4E-08 55.3 15.7 127 292-421 14-144 (145)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00042 9.1E-09 65.5 15.8 120 226-351 175-294 (395)
146 PF10037 MRP-S27: Mitochondria 97.9 0.00024 5.1E-09 67.4 14.0 124 250-373 61-186 (429)
147 PF08579 RPM2: Mitochondrial r 97.8 0.00053 1.2E-08 51.0 10.6 77 225-301 30-115 (120)
148 PF05843 Suf: Suppressor of fo 97.8 0.0009 1.9E-08 61.1 14.8 144 327-475 3-150 (280)
149 KOG2053 Mitochondrial inherita 97.8 0.057 1.2E-06 54.9 32.9 222 121-355 21-256 (932)
150 PF06239 ECSIT: Evolutionarily 97.8 0.0008 1.7E-08 56.6 12.9 51 217-267 44-99 (228)
151 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.3E-10 44.0 3.1 29 222-250 2-30 (31)
152 PF08579 RPM2: Mitochondrial r 97.8 0.0007 1.5E-08 50.4 10.9 75 332-406 32-115 (120)
153 KOG1127 TPR repeat-containing 97.8 0.0099 2.1E-07 60.8 22.1 216 198-420 472-696 (1238)
154 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.2E-10 43.5 3.3 30 147-176 2-31 (31)
155 cd00189 TPR Tetratricopeptide 97.7 0.00082 1.8E-08 49.6 11.3 91 365-457 5-95 (100)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.002 4.4E-08 50.2 13.8 58 366-423 45-104 (119)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.2E-08 51.0 12.9 100 361-460 3-106 (119)
158 PRK02603 photosystem I assembl 97.7 0.0029 6.2E-08 53.3 15.0 91 219-310 34-126 (172)
159 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 53.4 5.4 81 373-455 2-83 (84)
160 cd00189 TPR Tetratricopeptide 97.7 0.0011 2.4E-08 48.8 11.4 89 226-316 6-94 (100)
161 PF06239 ECSIT: Evolutionarily 97.6 0.00078 1.7E-08 56.7 9.7 104 253-375 45-153 (228)
162 PLN03088 SGT1, suppressor of 97.6 0.0019 4.2E-08 61.1 13.8 102 332-437 9-110 (356)
163 PRK02603 photosystem I assembl 97.5 0.007 1.5E-07 50.9 15.6 89 326-415 36-126 (172)
164 PRK15363 pathogenicity island 97.5 0.008 1.7E-07 48.4 14.6 91 366-458 41-131 (157)
165 PLN03088 SGT1, suppressor of 97.5 0.004 8.6E-08 59.1 15.0 92 297-390 9-100 (356)
166 PRK15363 pathogenicity island 97.5 0.0029 6.3E-08 50.8 11.7 95 222-318 37-131 (157)
167 CHL00033 ycf3 photosystem I as 97.5 0.0035 7.7E-08 52.5 13.1 94 362-456 37-139 (168)
168 PRK10866 outer membrane biogen 97.5 0.062 1.3E-06 47.8 21.5 58 115-174 38-98 (243)
169 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.8E-08 57.6 13.5 129 257-388 3-135 (280)
170 PF14938 SNAP: Soluble NSF att 97.5 0.0077 1.7E-07 55.2 16.1 110 366-475 120-245 (282)
171 CHL00033 ycf3 photosystem I as 97.4 0.0038 8.3E-08 52.2 12.8 61 293-353 38-100 (168)
172 PF12895 Apc3: Anaphase-promot 97.4 0.00027 5.8E-09 51.3 5.0 10 302-311 70-79 (84)
173 KOG0553 TPR repeat-containing 97.4 0.0047 1E-07 54.6 13.0 95 265-363 91-185 (304)
174 PF14938 SNAP: Soluble NSF att 97.4 0.014 3E-07 53.5 17.0 210 147-387 37-264 (282)
175 KOG0553 TPR repeat-containing 97.3 0.0043 9.3E-08 54.8 11.9 102 333-438 89-190 (304)
176 PRK10866 outer membrane biogen 97.3 0.11 2.5E-06 46.1 23.6 175 263-457 40-239 (243)
177 PRK10153 DNA-binding transcrip 97.3 0.018 4E-07 57.1 17.5 64 359-424 419-482 (517)
178 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3E-08 45.3 6.6 63 121-187 3-65 (68)
179 PRK10153 DNA-binding transcrip 97.2 0.047 1E-06 54.3 19.4 137 320-460 332-483 (517)
180 PF12688 TPR_5: Tetratrico pep 97.2 0.024 5.3E-07 43.9 13.5 90 333-422 9-102 (120)
181 KOG2041 WD40 repeat protein [G 97.2 0.31 6.7E-06 48.4 25.6 42 433-474 1024-1066(1189)
182 PF12688 TPR_5: Tetratrico pep 97.1 0.022 4.8E-07 44.1 12.8 107 365-477 6-118 (120)
183 PF14559 TPR_19: Tetratricopep 97.1 0.0019 4.1E-08 44.6 6.4 52 372-424 3-54 (68)
184 KOG2796 Uncharacterized conser 97.1 0.084 1.8E-06 45.9 17.1 59 148-210 180-238 (366)
185 PF13414 TPR_11: TPR repeat; P 97.1 0.0032 6.9E-08 43.6 7.1 62 395-457 3-65 (69)
186 PF13432 TPR_16: Tetratricopep 97.0 0.0033 7.1E-08 42.9 6.4 53 369-422 6-58 (65)
187 PF13525 YfiO: Outer membrane 97.0 0.18 4E-06 43.5 18.6 59 116-174 12-71 (203)
188 KOG2041 WD40 repeat protein [G 97.0 0.48 1E-05 47.2 24.9 70 396-465 1022-1092(1189)
189 PF03704 BTAD: Bacterial trans 96.9 0.0058 1.3E-07 49.8 8.7 71 396-467 63-138 (146)
190 KOG1538 Uncharacterized conser 96.9 0.27 5.9E-06 48.4 20.4 89 325-424 747-846 (1081)
191 PF12921 ATP13: Mitochondrial 96.9 0.029 6.3E-07 43.9 11.6 104 359-482 1-105 (126)
192 COG4235 Cytochrome c biogenesi 96.9 0.078 1.7E-06 47.3 15.4 102 357-460 153-257 (287)
193 PF13432 TPR_16: Tetratricopep 96.9 0.0066 1.4E-07 41.3 7.1 58 401-459 3-60 (65)
194 KOG1130 Predicted G-alpha GTPa 96.9 0.11 2.4E-06 48.2 16.4 131 327-457 197-342 (639)
195 KOG0550 Molecular chaperone (D 96.9 0.41 8.8E-06 44.7 20.8 156 263-424 177-350 (486)
196 COG3898 Uncharacterized membra 96.9 0.39 8.4E-06 44.5 29.3 282 123-423 98-391 (531)
197 PF13414 TPR_11: TPR repeat; P 96.8 0.0063 1.4E-07 42.0 6.9 63 360-423 3-66 (69)
198 PRK10803 tol-pal system protei 96.8 0.043 9.4E-07 49.3 13.6 87 372-458 155-245 (263)
199 COG4700 Uncharacterized protei 96.8 0.23 5E-06 40.9 17.8 100 178-284 87-189 (251)
200 COG4700 Uncharacterized protei 96.8 0.23 5.1E-06 40.9 18.3 126 287-416 86-214 (251)
201 COG4235 Cytochrome c biogenesi 96.8 0.089 1.9E-06 47.0 15.0 100 324-425 155-257 (287)
202 PF13281 DUF4071: Domain of un 96.8 0.49 1.1E-05 44.5 21.1 163 295-459 146-334 (374)
203 PF03704 BTAD: Bacterial trans 96.7 0.016 3.4E-07 47.2 9.7 107 75-183 21-139 (146)
204 PF13525 YfiO: Outer membrane 96.6 0.4 8.7E-06 41.4 20.6 173 263-450 13-198 (203)
205 PRK10803 tol-pal system protei 96.6 0.065 1.4E-06 48.2 13.1 98 222-319 145-246 (263)
206 PF08631 SPO22: Meiosis protei 96.5 0.63 1.4E-05 42.5 24.7 165 121-290 5-192 (278)
207 PF04840 Vps16_C: Vps16, C-ter 96.5 0.75 1.6E-05 42.7 24.5 111 292-422 179-289 (319)
208 KOG2280 Vacuolar assembly/sort 96.4 1.2 2.7E-05 44.9 24.4 312 114-454 442-794 (829)
209 PF13371 TPR_9: Tetratricopept 96.4 0.024 5.2E-07 39.6 7.7 56 368-424 3-58 (73)
210 PF10300 DUF3808: Protein of u 96.3 0.27 5.8E-06 48.6 17.0 181 128-317 176-374 (468)
211 PRK15331 chaperone protein Sic 96.3 0.36 7.9E-06 39.3 14.5 86 336-423 48-133 (165)
212 PF13424 TPR_12: Tetratricopep 96.3 0.016 3.4E-07 41.2 6.3 62 396-457 6-73 (78)
213 PF13170 DUF4003: Protein of u 96.3 0.52 1.1E-05 43.2 17.3 137 161-299 78-226 (297)
214 PF12921 ATP13: Mitochondrial 96.2 0.13 2.8E-06 40.2 11.5 53 355-407 47-100 (126)
215 PF04840 Vps16_C: Vps16, C-ter 96.2 1 2.2E-05 41.8 28.5 110 327-456 179-288 (319)
216 PF08631 SPO22: Meiosis protei 96.2 0.94 2E-05 41.4 24.8 62 257-319 86-150 (278)
217 PRK15331 chaperone protein Sic 96.2 0.42 9.1E-06 38.9 14.4 91 367-459 44-134 (165)
218 PF13424 TPR_12: Tetratricopep 96.2 0.017 3.7E-07 41.0 6.0 62 361-422 6-73 (78)
219 COG3898 Uncharacterized membra 96.2 1.1 2.4E-05 41.6 29.4 295 148-460 85-393 (531)
220 PF13170 DUF4003: Protein of u 96.1 1.1 2.3E-05 41.2 20.4 132 236-369 78-226 (297)
221 KOG1130 Predicted G-alpha GTPa 96.1 0.049 1.1E-06 50.4 9.5 120 361-480 196-330 (639)
222 PF13371 TPR_9: Tetratricopept 96.0 0.05 1.1E-06 37.9 7.7 61 118-182 4-64 (73)
223 KOG3941 Intermediate in Toll s 96.0 0.079 1.7E-06 46.6 10.0 89 217-305 64-173 (406)
224 KOG1920 IkappaB kinase complex 96.0 2.8 6.1E-05 44.8 22.7 129 196-352 892-1026(1265)
225 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.3E-05 41.5 28.9 117 361-481 398-518 (660)
226 KOG2796 Uncharacterized conser 95.9 1.1 2.3E-05 39.4 23.2 143 292-437 179-326 (366)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.17 3.6E-06 48.3 12.3 64 324-389 74-141 (453)
228 PF09205 DUF1955: Domain of un 95.8 0.5 1.1E-05 36.6 12.3 57 298-355 94-150 (161)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.15 3.3E-06 48.5 11.7 101 357-461 72-176 (453)
230 KOG2280 Vacuolar assembly/sort 95.8 2.6 5.6E-05 42.7 21.5 110 292-420 686-795 (829)
231 smart00299 CLH Clathrin heavy 95.7 0.84 1.8E-05 36.7 14.9 41 261-302 13-53 (140)
232 PF13281 DUF4071: Domain of un 95.6 2 4.4E-05 40.4 22.5 77 114-190 146-227 (374)
233 KOG0550 Molecular chaperone (D 95.6 2 4.4E-05 40.3 22.6 261 121-390 61-351 (486)
234 KOG3941 Intermediate in Toll s 95.6 0.14 3E-06 45.1 9.8 100 253-352 65-186 (406)
235 PF04053 Coatomer_WDAD: Coatom 95.6 0.25 5.5E-06 48.0 12.7 151 197-384 274-426 (443)
236 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.3 5E-05 40.4 28.2 130 326-458 398-530 (660)
237 PF10300 DUF3808: Protein of u 95.4 1.7 3.7E-05 43.0 18.2 183 293-478 191-401 (468)
238 KOG1585 Protein required for f 95.4 1.6 3.5E-05 37.8 16.8 207 145-383 31-250 (308)
239 KOG0543 FKBP-type peptidyl-pro 95.4 0.32 7E-06 45.3 12.0 96 326-423 258-354 (397)
240 smart00299 CLH Clathrin heavy 95.4 1.1 2.4E-05 35.9 15.0 41 226-267 13-53 (140)
241 KOG1538 Uncharacterized conser 95.3 3.4 7.4E-05 41.1 19.2 21 368-388 825-845 (1081)
242 PF09205 DUF1955: Domain of un 94.8 1.5 3.3E-05 34.1 14.3 63 258-321 89-151 (161)
243 PF07079 DUF1347: Protein of u 94.8 4 8.7E-05 38.9 36.0 385 73-473 92-533 (549)
244 PF07079 DUF1347: Protein of u 94.7 4.1 8.9E-05 38.9 26.1 20 119-138 16-35 (549)
245 PF04053 Coatomer_WDAD: Coatom 94.7 0.96 2.1E-05 44.1 13.9 163 113-315 265-427 (443)
246 KOG1920 IkappaB kinase complex 94.7 7.5 0.00016 41.8 26.9 17 403-419 1034-1050(1265)
247 COG4105 ComL DNA uptake lipopr 94.6 3 6.4E-05 36.7 19.9 55 230-284 44-100 (254)
248 PF07035 Mic1: Colon cancer-as 94.6 2.2 4.7E-05 35.2 15.0 136 310-459 14-149 (167)
249 KOG2610 Uncharacterized conser 94.6 1.1 2.3E-05 40.8 12.5 153 267-422 115-274 (491)
250 COG4649 Uncharacterized protei 94.3 2.5 5.4E-05 34.7 14.6 139 108-249 57-196 (221)
251 COG3118 Thioredoxin domain-con 94.3 3.8 8.3E-05 36.8 17.5 139 334-476 143-286 (304)
252 PF13929 mRNA_stabil: mRNA sta 94.3 3.5 7.5E-05 37.1 15.0 84 216-299 198-287 (292)
253 COG1729 Uncharacterized protei 94.2 0.85 1.8E-05 40.4 11.1 58 401-458 184-243 (262)
254 KOG4555 TPR repeat-containing 94.2 1.2 2.7E-05 34.4 10.4 91 369-460 52-145 (175)
255 COG0457 NrfG FOG: TPR repeat [ 94.2 3.4 7.3E-05 35.8 28.6 189 198-388 37-230 (291)
256 KOG0543 FKBP-type peptidyl-pro 94.2 1.2 2.7E-05 41.6 12.5 141 295-459 213-355 (397)
257 KOG1941 Acetylcholine receptor 94.2 2.8 6.1E-05 38.7 14.3 126 261-387 128-273 (518)
258 KOG2114 Vacuolar assembly/sort 94.1 1 2.3E-05 46.0 12.7 79 230-315 378-456 (933)
259 COG4105 ComL DNA uptake lipopr 94.0 4.1 8.9E-05 35.9 19.8 84 178-266 33-117 (254)
260 PF13512 TPR_18: Tetratricopep 94.0 1.8 3.8E-05 34.5 11.4 75 117-191 18-93 (142)
261 COG3629 DnrI DNA-binding trans 93.9 0.81 1.8E-05 41.1 10.6 74 361-435 154-232 (280)
262 COG3118 Thioredoxin domain-con 93.8 4.9 0.00011 36.2 16.1 53 119-173 144-196 (304)
263 PF07035 Mic1: Colon cancer-as 93.2 4.1 9E-05 33.6 15.7 133 131-283 16-148 (167)
264 COG0457 NrfG FOG: TPR repeat [ 93.2 5.1 0.00011 34.6 30.8 199 256-457 60-263 (291)
265 KOG4555 TPR repeat-containing 93.2 3.2 6.9E-05 32.3 11.5 90 299-390 52-145 (175)
266 COG3629 DnrI DNA-binding trans 93.0 1.3 2.7E-05 39.9 10.4 91 97-189 141-236 (280)
267 KOG2610 Uncharacterized conser 93.0 2.6 5.6E-05 38.5 12.0 154 122-280 116-272 (491)
268 PF13512 TPR_18: Tetratricopep 92.9 3.1 6.8E-05 33.1 11.3 52 372-423 22-75 (142)
269 PRK11906 transcriptional regul 92.7 9.4 0.0002 36.9 16.0 108 341-453 320-430 (458)
270 PF09613 HrpB1_HrpK: Bacterial 92.6 4.8 0.0001 32.8 12.9 51 337-389 22-73 (160)
271 COG1729 Uncharacterized protei 92.6 3.4 7.4E-05 36.7 12.2 86 304-389 155-244 (262)
272 KOG4570 Uncharacterized conser 92.5 1.2 2.5E-05 40.2 9.1 49 410-458 115-163 (418)
273 PF13428 TPR_14: Tetratricopep 92.4 0.48 1E-05 29.0 5.0 25 399-423 5-29 (44)
274 COG2909 MalT ATP-dependent tra 92.4 16 0.00035 38.2 28.7 223 230-455 425-684 (894)
275 KOG1258 mRNA processing protei 92.4 13 0.00027 37.0 36.7 190 289-482 296-492 (577)
276 PF04184 ST7: ST7 protein; In 92.3 12 0.00025 36.5 17.7 58 365-422 264-322 (539)
277 KOG1585 Protein required for f 92.2 7.5 0.00016 34.0 20.6 207 220-453 31-250 (308)
278 PF13428 TPR_14: Tetratricopep 92.2 0.62 1.4E-05 28.5 5.3 28 222-249 3-30 (44)
279 PF10602 RPN7: 26S proteasome 92.1 4.6 9.9E-05 33.9 12.2 94 221-316 37-139 (177)
280 PF10602 RPN7: 26S proteasome 91.9 1.8 3.9E-05 36.4 9.5 97 361-457 37-140 (177)
281 KOG1550 Extracellular protein 91.8 16 0.00036 37.1 25.5 149 125-285 228-394 (552)
282 KOG1464 COP9 signalosome, subu 91.7 9 0.00019 33.9 17.9 204 174-382 20-253 (440)
283 KOG1550 Extracellular protein 91.6 17 0.00038 36.9 26.5 254 161-425 228-505 (552)
284 PF13176 TPR_7: Tetratricopept 91.4 0.51 1.1E-05 27.4 4.1 26 147-172 1-26 (36)
285 PF13176 TPR_7: Tetratricopept 91.2 0.57 1.2E-05 27.2 4.2 24 223-246 2-25 (36)
286 COG4649 Uncharacterized protei 90.8 8.3 0.00018 31.8 14.4 129 336-464 69-201 (221)
287 KOG1941 Acetylcholine receptor 90.7 7.2 0.00016 36.1 12.3 225 197-421 19-272 (518)
288 KOG0276 Vesicle coat complex C 90.6 3.7 8E-05 40.6 11.1 131 147-315 616-746 (794)
289 PF00637 Clathrin: Region in C 90.6 0.0094 2E-07 48.3 -5.4 53 297-349 14-66 (143)
290 KOG4570 Uncharacterized conser 90.6 4.2 9.2E-05 36.8 10.6 48 305-352 115-162 (418)
291 PF04184 ST7: ST7 protein; In 90.5 18 0.00039 35.3 21.9 166 109-297 168-338 (539)
292 PRK11906 transcriptional regul 90.4 18 0.00039 35.1 17.1 80 272-353 321-400 (458)
293 TIGR02561 HrpB1_HrpK type III 90.0 8.8 0.00019 30.8 11.3 50 338-389 23-73 (153)
294 COG3947 Response regulator con 88.9 17 0.00037 32.7 15.5 72 396-468 280-356 (361)
295 PF13929 mRNA_stabil: mRNA sta 88.6 18 0.00039 32.7 19.8 119 196-314 140-262 (292)
296 PF13431 TPR_17: Tetratricopep 88.4 0.66 1.4E-05 26.5 2.8 21 394-414 12-32 (34)
297 PF02259 FAT: FAT domain; Int 88.3 23 0.0005 33.4 20.5 66 323-388 144-212 (352)
298 PF04097 Nic96: Nup93/Nic96; 87.8 37 0.0008 35.1 21.7 96 365-465 419-537 (613)
299 PF13374 TPR_10: Tetratricopep 86.7 1.7 3.6E-05 25.8 4.2 27 396-422 3-29 (42)
300 PF13431 TPR_17: Tetratricopep 86.6 1 2.2E-05 25.8 2.9 24 142-165 10-33 (34)
301 PF00515 TPR_1: Tetratricopept 86.6 1.7 3.8E-05 24.5 4.0 25 398-422 4-28 (34)
302 PF11848 DUF3368: Domain of un 86.2 3.1 6.6E-05 26.1 5.2 36 440-475 12-47 (48)
303 PF00637 Clathrin: Region in C 86.2 0.24 5.1E-06 40.0 0.2 53 367-419 14-66 (143)
304 COG4455 ImpE Protein of avirul 86.1 5.8 0.00012 34.0 8.1 77 362-439 3-81 (273)
305 PF07719 TPR_2: Tetratricopept 85.7 2 4.4E-05 24.1 4.0 25 398-422 4-28 (34)
306 KOG0890 Protein kinase of the 85.6 85 0.0018 37.2 23.9 143 121-279 1395-1542(2382)
307 PF11207 DUF2989: Protein of u 85.6 10 0.00022 32.2 9.4 22 393-414 176-197 (203)
308 KOG2114 Vacuolar assembly/sort 85.3 52 0.0011 34.5 23.9 82 118-211 377-458 (933)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 10 0.00023 27.7 7.9 45 413-457 25-69 (103)
310 PF13374 TPR_10: Tetratricopep 85.0 2.7 5.8E-05 24.9 4.5 27 221-247 3-29 (42)
311 PF00515 TPR_1: Tetratricopept 84.9 3.1 6.7E-05 23.4 4.5 29 146-174 2-30 (34)
312 PF02284 COX5A: Cytochrome c o 84.9 14 0.0003 27.5 8.6 46 343-388 28-73 (108)
313 PF09613 HrpB1_HrpK: Bacterial 84.5 21 0.00045 29.2 12.9 19 405-423 54-72 (160)
314 COG4785 NlpI Lipoprotein NlpI, 84.2 26 0.00057 30.2 14.7 180 197-389 78-266 (297)
315 PF02259 FAT: FAT domain; Int 84.0 39 0.00084 31.9 24.5 65 254-318 145-212 (352)
316 TIGR03504 FimV_Cterm FimV C-te 83.6 2.5 5.5E-05 25.9 3.8 25 436-460 5-29 (44)
317 PF07719 TPR_2: Tetratricopept 83.4 3.9 8.4E-05 22.8 4.5 29 146-174 2-30 (34)
318 COG1747 Uncharacterized N-term 82.7 52 0.0011 32.4 25.8 167 217-390 63-235 (711)
319 KOG2066 Vacuolar assembly/sort 82.5 65 0.0014 33.5 23.1 153 116-282 363-532 (846)
320 KOG0276 Vesicle coat complex C 81.9 39 0.00085 33.9 12.8 104 152-281 644-747 (794)
321 KOG1586 Protein required for f 81.6 36 0.00077 29.8 13.7 90 297-395 100-189 (288)
322 COG2909 MalT ATP-dependent tra 81.5 76 0.0017 33.6 26.6 229 154-385 424-684 (894)
323 KOG0687 26S proteasome regulat 80.4 48 0.001 30.5 13.5 135 215-353 65-209 (393)
324 PRK15180 Vi polysaccharide bio 80.4 59 0.0013 31.7 13.1 215 177-401 286-500 (831)
325 KOG4648 Uncharacterized conser 80.2 5.6 0.00012 36.5 6.2 53 262-316 104-157 (536)
326 PF10345 Cohesin_load: Cohesin 79.3 83 0.0018 32.6 28.8 63 406-468 372-450 (608)
327 PF13181 TPR_8: Tetratricopept 78.8 7.2 0.00016 21.8 4.6 27 432-458 3-29 (34)
328 COG2976 Uncharacterized protei 78.6 40 0.00086 28.6 14.6 86 334-424 98-188 (207)
329 KOG1258 mRNA processing protei 78.5 78 0.0017 31.8 26.3 135 109-249 45-180 (577)
330 PF06552 TOM20_plant: Plant sp 78.5 38 0.00083 28.3 12.5 115 125-250 7-137 (186)
331 COG4785 NlpI Lipoprotein NlpI, 78.3 44 0.00096 28.9 17.4 161 290-461 99-268 (297)
332 COG2976 Uncharacterized protei 77.3 44 0.00095 28.3 13.9 131 326-460 55-189 (207)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 26 0.00057 25.8 9.5 47 341-387 23-69 (103)
334 PF07163 Pex26: Pex26 protein; 77.2 33 0.00072 30.8 9.9 90 294-383 87-181 (309)
335 PF13181 TPR_8: Tetratricopept 77.1 7.7 0.00017 21.6 4.4 29 146-174 2-30 (34)
336 KOG4234 TPR repeat-containing 76.5 40 0.00086 28.7 9.6 88 301-389 106-197 (271)
337 PRK09687 putative lyase; Provi 75.5 65 0.0014 29.4 30.1 236 217-477 34-279 (280)
338 PF04097 Nic96: Nup93/Nic96; 75.1 1.1E+02 0.0024 31.8 16.5 92 114-212 263-355 (613)
339 PF02284 COX5A: Cytochrome c o 74.7 32 0.0007 25.6 10.2 47 413-459 28-74 (108)
340 PF13174 TPR_6: Tetratricopept 74.5 4.8 0.0001 22.2 3.0 16 406-421 11-26 (33)
341 PF13174 TPR_6: Tetratricopept 74.3 6.8 0.00015 21.6 3.6 26 149-174 4-29 (33)
342 PF07163 Pex26: Pex26 protein; 74.1 49 0.0011 29.8 10.1 87 186-278 89-181 (309)
343 TIGR03504 FimV_Cterm FimV C-te 73.4 8.5 0.00018 23.6 3.9 26 150-175 4-29 (44)
344 PF07721 TPR_4: Tetratricopept 73.2 5.6 0.00012 20.9 2.8 20 435-454 6-25 (26)
345 KOG4234 TPR repeat-containing 72.3 61 0.0013 27.7 9.9 90 229-319 104-197 (271)
346 PRK10564 maltose regulon perip 71.9 11 0.00024 34.2 5.9 47 427-473 253-300 (303)
347 PRK09687 putative lyase; Provi 71.7 81 0.0018 28.8 28.7 202 218-440 66-277 (280)
348 COG5187 RPN7 26S proteasome re 69.5 89 0.0019 28.4 14.5 135 177-319 78-221 (412)
349 KOG1464 COP9 signalosome, subu 68.5 89 0.0019 28.0 18.1 202 215-416 21-252 (440)
350 COG3947 Response regulator con 68.0 97 0.0021 28.2 16.8 56 330-386 284-339 (361)
351 KOG2063 Vacuolar assembly/sort 67.9 1.8E+02 0.0039 31.3 17.4 196 258-475 507-742 (877)
352 KOG4507 Uncharacterized conser 67.6 32 0.0007 34.3 8.2 152 177-334 568-719 (886)
353 KOG2297 Predicted translation 67.6 1E+02 0.0022 28.3 17.5 20 395-414 321-340 (412)
354 PHA02875 ankyrin repeat protei 66.5 38 0.00082 33.0 9.1 75 196-279 11-89 (413)
355 TIGR02561 HrpB1_HrpK type III 66.3 68 0.0015 25.9 12.5 50 373-424 23-73 (153)
356 PF11848 DUF3368: Domain of un 66.3 26 0.00056 21.9 5.1 37 152-188 9-45 (48)
357 cd08819 CARD_MDA5_2 Caspase ac 66.3 47 0.001 23.9 7.8 65 274-344 21-85 (88)
358 cd00280 TRFH Telomeric Repeat 65.3 50 0.0011 27.7 7.8 63 125-191 85-154 (200)
359 PF11207 DUF2989: Protein of u 64.5 91 0.002 26.7 18.2 79 265-345 117-198 (203)
360 PF10579 Rapsyn_N: Rapsyn N-te 64.4 25 0.00055 24.7 5.1 46 407-452 18-65 (80)
361 PRK11619 lytic murein transgly 64.3 1.9E+02 0.0041 30.3 29.2 48 333-383 415-462 (644)
362 KOG4077 Cytochrome c oxidase, 64.2 58 0.0013 25.4 7.4 46 343-388 67-112 (149)
363 COG0790 FOG: TPR repeat, SEL1 63.4 1.2E+02 0.0026 27.7 24.4 46 273-321 173-222 (292)
364 PF14669 Asp_Glu_race_2: Putat 62.8 95 0.0021 26.3 13.9 24 365-388 137-160 (233)
365 cd00280 TRFH Telomeric Repeat 62.6 65 0.0014 27.1 7.9 59 74-139 83-141 (200)
366 TIGR02508 type_III_yscG type I 62.4 62 0.0014 24.1 8.9 51 369-425 48-98 (115)
367 KOG4648 Uncharacterized conser 62.0 48 0.001 30.7 7.8 93 295-390 102-195 (536)
368 PF04762 IKI3: IKI3 family; I 61.6 95 0.0021 34.0 11.4 20 226-245 700-719 (928)
369 PF14689 SPOB_a: Sensor_kinase 61.4 31 0.00067 23.0 5.1 46 125-173 6-51 (62)
370 COG1747 Uncharacterized N-term 60.7 1.8E+02 0.004 28.9 25.4 180 177-369 63-248 (711)
371 PF13762 MNE1: Mitochondrial s 60.6 88 0.0019 25.2 11.4 80 363-442 42-127 (145)
372 PF14689 SPOB_a: Sensor_kinase 60.3 21 0.00045 23.8 4.1 24 399-422 27-50 (62)
373 TIGR02508 type_III_yscG type I 60.0 69 0.0015 23.8 7.9 85 376-468 21-105 (115)
374 smart00028 TPR Tetratricopepti 59.6 17 0.00036 19.0 3.3 24 399-422 5-28 (34)
375 KOG4077 Cytochrome c oxidase, 59.5 83 0.0018 24.6 7.7 45 414-458 68-112 (149)
376 KOG2062 26S proteasome regulat 58.9 2.3E+02 0.0051 29.6 21.6 197 127-335 41-253 (929)
377 PF07064 RIC1: RIC1; InterPro 58.2 1.4E+02 0.0031 26.9 14.1 61 225-285 184-250 (258)
378 PF08424 NRDE-2: NRDE-2, neces 58.1 1.6E+02 0.0035 27.5 18.8 136 342-479 48-210 (321)
379 PF10475 DUF2450: Protein of u 57.4 1.2E+02 0.0026 27.9 10.1 26 148-173 130-155 (291)
380 PF08311 Mad3_BUB1_I: Mad3/BUB 57.4 91 0.002 24.4 9.9 44 127-170 81-124 (126)
381 PF11846 DUF3366: Domain of un 57.2 59 0.0013 27.7 7.6 31 427-457 141-171 (193)
382 PF06552 TOM20_plant: Plant sp 56.9 1.2E+02 0.0026 25.5 11.5 77 198-285 49-137 (186)
383 COG4455 ImpE Protein of avirul 56.7 1.4E+02 0.0029 26.1 11.7 75 114-190 6-82 (273)
384 cd08812 CARD_RIG-I_like Caspas 56.7 73 0.0016 23.0 6.9 64 98-165 23-86 (88)
385 KOG4507 Uncharacterized conser 56.2 61 0.0013 32.5 7.9 100 303-404 620-719 (886)
386 PHA02875 ankyrin repeat protei 56.2 2E+02 0.0043 27.9 13.1 183 150-360 37-230 (413)
387 PF11846 DUF3366: Domain of un 55.7 68 0.0015 27.3 7.7 33 392-424 141-173 (193)
388 PF09477 Type_III_YscG: Bacter 55.7 87 0.0019 23.6 8.0 79 340-425 21-99 (116)
389 KOG4567 GTPase-activating prot 55.4 1.5E+02 0.0032 27.3 9.5 43 241-283 264-306 (370)
390 COG5108 RPO41 Mitochondrial DN 55.2 86 0.0019 32.0 8.8 75 330-407 33-115 (1117)
391 PRK10564 maltose regulon perip 55.2 27 0.00057 31.9 5.1 42 217-258 253-295 (303)
392 PF10366 Vps39_1: Vacuolar sor 55.1 51 0.0011 25.0 6.0 27 147-173 41-67 (108)
393 KOG1114 Tripeptidyl peptidase 54.9 3.1E+02 0.0067 29.7 13.6 52 429-480 1230-1282(1304)
394 PF11663 Toxin_YhaV: Toxin wit 54.4 15 0.00033 28.8 3.0 33 155-189 105-137 (140)
395 COG0735 Fur Fe2+/Zn2+ uptake r 54.0 90 0.002 25.1 7.6 22 403-424 28-49 (145)
396 KOG0687 26S proteasome regulat 53.9 1.9E+02 0.0041 26.9 16.4 136 175-318 65-209 (393)
397 PF14669 Asp_Glu_race_2: Putat 53.9 1.4E+02 0.003 25.4 16.6 180 175-384 3-205 (233)
398 KOG2396 HAT (Half-A-TPR) repea 53.5 2.4E+02 0.0052 28.0 24.5 281 126-423 268-558 (568)
399 PF11817 Foie-gras_1: Foie gra 52.4 90 0.002 27.9 8.2 53 263-315 186-243 (247)
400 PF10579 Rapsyn_N: Rapsyn N-te 52.4 41 0.00089 23.7 4.5 45 122-166 19-64 (80)
401 PF11817 Foie-gras_1: Foie gra 52.1 52 0.0011 29.4 6.6 56 115-170 184-243 (247)
402 COG5187 RPN7 26S proteasome re 51.8 1.9E+02 0.0041 26.4 11.9 133 217-353 78-220 (412)
403 PF09454 Vps23_core: Vps23 cor 51.6 39 0.00084 22.8 4.3 48 394-442 7-54 (65)
404 COG0790 FOG: TPR repeat, SEL1 50.8 2E+02 0.0043 26.3 25.5 25 445-469 252-276 (292)
405 PRK07003 DNA polymerase III su 50.7 3.4E+02 0.0074 29.0 15.3 83 202-287 182-277 (830)
406 PF12862 Apc5: Anaphase-promot 50.2 56 0.0012 23.9 5.5 15 157-171 53-67 (94)
407 COG2178 Predicted RNA-binding 50.1 1.6E+02 0.0035 25.0 11.7 75 126-212 20-97 (204)
408 PF00244 14-3-3: 14-3-3 protei 49.7 1.5E+02 0.0032 26.3 9.0 58 225-282 6-64 (236)
409 PF11663 Toxin_YhaV: Toxin wit 49.0 18 0.00039 28.4 2.7 30 268-299 108-137 (140)
410 cd08819 CARD_MDA5_2 Caspase ac 48.9 1E+02 0.0022 22.3 7.1 15 373-387 49-63 (88)
411 PF07575 Nucleopor_Nup85: Nup8 48.6 88 0.0019 32.1 8.4 31 442-472 507-537 (566)
412 PF09797 NatB_MDM20: N-acetylt 48.4 2.5E+02 0.0055 26.8 23.9 67 330-397 185-254 (365)
413 PRK10941 hypothetical protein; 47.8 2.1E+02 0.0045 26.0 9.6 61 363-424 184-244 (269)
414 PF08424 NRDE-2: NRDE-2, neces 47.2 2.5E+02 0.0053 26.3 15.8 118 237-356 48-185 (321)
415 COG2405 Predicted nucleic acid 46.8 50 0.0011 26.1 4.7 35 441-475 120-154 (157)
416 PRK09857 putative transposase; 45.5 1.8E+02 0.004 26.7 9.2 64 400-464 211-274 (292)
417 PF12862 Apc5: Anaphase-promot 45.5 1.2E+02 0.0025 22.1 7.1 24 436-459 47-70 (94)
418 PF09986 DUF2225: Uncharacteri 45.5 2.1E+02 0.0045 25.0 12.0 26 438-463 173-198 (214)
419 PF04190 DUF410: Protein of un 45.3 2.3E+02 0.0051 25.5 16.0 190 196-420 2-216 (260)
420 KOG4642 Chaperone-dependent E3 44.9 2.2E+02 0.0049 25.2 11.2 119 265-387 20-144 (284)
421 PF09454 Vps23_core: Vps23 cor 44.8 96 0.0021 20.9 5.8 49 142-191 5-53 (65)
422 KOG4521 Nuclear pore complex, 44.5 4.9E+02 0.011 29.1 14.5 152 299-453 929-1125(1480)
423 KOG0686 COP9 signalosome, subu 44.5 3E+02 0.0065 26.5 13.8 63 146-212 151-215 (466)
424 PF03745 DUF309: Domain of unk 44.1 95 0.0021 20.7 5.8 49 405-453 9-62 (62)
425 COG0735 Fur Fe2+/Zn2+ uptake r 44.1 1E+02 0.0023 24.8 6.6 61 278-339 9-69 (145)
426 smart00804 TAP_C C-terminal do 43.6 23 0.00049 23.8 2.2 25 122-146 38-62 (63)
427 KOG4567 GTPase-activating prot 43.5 2.1E+02 0.0045 26.4 8.6 56 346-406 264-319 (370)
428 PF02847 MA3: MA3 domain; Int 43.0 1E+02 0.0022 23.3 6.2 20 366-385 8-27 (113)
429 KOG2908 26S proteasome regulat 42.9 2.9E+02 0.0063 25.9 10.9 77 115-191 81-167 (380)
430 KOG2297 Predicted translation 42.8 2.8E+02 0.006 25.6 20.4 75 296-380 261-341 (412)
431 PF00244 14-3-3: 14-3-3 protei 42.6 2.2E+02 0.0047 25.3 8.9 59 260-318 6-65 (236)
432 PRK13342 recombination factor 42.6 3.3E+02 0.0072 26.6 19.5 23 339-361 244-266 (413)
433 COG5159 RPN6 26S proteasome re 42.3 2.7E+02 0.0059 25.4 15.6 46 196-242 15-67 (421)
434 PRK14956 DNA polymerase III su 41.2 3.8E+02 0.0082 26.8 11.8 36 289-324 247-282 (484)
435 KOG2471 TPR repeat-containing 40.6 3.8E+02 0.0083 26.6 13.9 76 399-476 287-380 (696)
436 PF10475 DUF2450: Protein of u 40.4 3E+02 0.0065 25.3 12.2 23 358-380 195-217 (291)
437 KOG2659 LisH motif-containing 40.2 2.6E+02 0.0056 24.5 9.4 22 226-247 70-91 (228)
438 PRK09169 hypothetical protein; 39.8 7.8E+02 0.017 30.0 38.5 350 144-493 329-736 (2316)
439 KOG1839 Uncharacterized protei 39.8 4.1E+02 0.0088 29.9 11.6 154 301-454 943-1123(1236)
440 KOG0890 Protein kinase of the 39.0 8.1E+02 0.018 30.0 21.1 60 397-459 1672-1731(2382)
441 PF13762 MNE1: Mitochondrial s 38.9 2.1E+02 0.0045 23.1 12.9 79 259-337 43-127 (145)
442 KOG3364 Membrane protein invol 38.9 2E+02 0.0043 22.9 10.8 72 177-249 29-100 (149)
443 PF10366 Vps39_1: Vacuolar sor 38.2 1.8E+02 0.0038 22.1 7.0 27 397-423 41-67 (108)
444 KOG0686 COP9 signalosome, subu 37.5 3.9E+02 0.0084 25.8 15.0 64 256-319 151-216 (466)
445 COG4003 Uncharacterized protei 37.5 1.3E+02 0.0027 21.3 5.0 34 151-185 37-70 (98)
446 smart00777 Mad3_BUB1_I Mad3/BU 37.4 2E+02 0.0044 22.5 8.0 93 77-169 3-123 (125)
447 PRK11619 lytic murein transgly 37.2 5.1E+02 0.011 27.1 34.7 181 233-419 254-463 (644)
448 PRK09462 fur ferric uptake reg 36.9 1.7E+02 0.0036 23.6 6.8 60 385-445 7-67 (148)
449 PRK11639 zinc uptake transcrip 36.5 1.7E+02 0.0037 24.3 6.9 61 385-446 16-76 (169)
450 KOG4814 Uncharacterized conser 36.1 5.1E+02 0.011 26.8 11.1 93 182-282 357-455 (872)
451 PRK14956 DNA polymerase III su 36.1 4.6E+02 0.0099 26.3 12.0 15 197-211 213-227 (484)
452 PF12926 MOZART2: Mitotic-spin 36.0 1.7E+02 0.0036 21.1 8.2 43 241-283 29-71 (88)
453 COG4003 Uncharacterized protei 36.0 51 0.0011 23.2 3.0 29 115-143 37-65 (98)
454 PF11838 ERAP1_C: ERAP1-like C 35.9 3.6E+02 0.0078 25.0 19.3 223 199-428 55-310 (324)
455 PRK14951 DNA polymerase III su 35.4 5.1E+02 0.011 27.0 11.3 91 370-463 180-283 (618)
456 PRK14958 DNA polymerase III su 35.2 4.9E+02 0.011 26.3 13.0 35 219-254 245-279 (509)
457 PRK11639 zinc uptake transcrip 35.1 2.6E+02 0.0057 23.2 8.3 66 348-414 14-79 (169)
458 PF09868 DUF2095: Uncharacteri 34.4 2.1E+02 0.0045 21.9 6.0 36 151-187 67-102 (128)
459 COG1528 Ftn Ferritin-like prot 34.1 1.1E+02 0.0025 25.1 5.2 56 222-279 100-155 (167)
460 KOG4642 Chaperone-dependent E3 33.9 3.4E+02 0.0074 24.1 10.9 118 229-350 19-142 (284)
461 PF02847 MA3: MA3 domain; Int 33.9 2E+02 0.0044 21.6 6.9 21 226-246 8-28 (113)
462 PF07575 Nucleopor_Nup85: Nup8 33.9 1.1E+02 0.0024 31.3 6.6 27 255-281 405-431 (566)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 33.9 2.3E+02 0.005 22.1 9.7 42 343-384 81-123 (126)
464 cd07153 Fur_like Ferric uptake 33.6 1.4E+02 0.003 22.7 5.7 37 374-410 14-50 (116)
465 PRK13342 recombination factor 33.6 4.6E+02 0.01 25.6 19.7 32 233-264 243-274 (413)
466 KOG2034 Vacuolar sorting prote 33.3 6.5E+02 0.014 27.1 26.9 182 258-460 507-697 (911)
467 PRK07764 DNA polymerase III su 33.3 6.7E+02 0.014 27.3 12.2 27 225-252 253-279 (824)
468 KOG4279 Serine/threonine prote 33.2 6.1E+02 0.013 26.8 12.5 173 220-424 201-395 (1226)
469 KOG2659 LisH motif-containing 33.1 3.4E+02 0.0073 23.8 11.5 98 321-420 22-128 (228)
470 PF01475 FUR: Ferric uptake re 32.3 1.3E+02 0.0027 23.2 5.2 41 401-441 13-53 (120)
471 PRK10941 hypothetical protein; 32.2 3.9E+02 0.0085 24.3 10.9 80 397-477 183-263 (269)
472 PRK08691 DNA polymerase III su 32.1 6.4E+02 0.014 26.7 12.4 96 201-300 181-289 (709)
473 PF14853 Fis1_TPR_C: Fis1 C-te 32.0 1.4E+02 0.0031 19.1 6.0 38 150-189 6-43 (53)
474 PF09868 DUF2095: Uncharacteri 31.8 1.6E+02 0.0035 22.4 5.2 30 114-143 66-95 (128)
475 cd07153 Fur_like Ferric uptake 31.8 1E+02 0.0022 23.5 4.6 45 401-445 6-50 (116)
476 PF09477 Type_III_YscG: Bacter 31.7 2.3E+02 0.005 21.5 8.5 81 373-460 19-99 (116)
477 PF01475 FUR: Ferric uptake re 31.6 72 0.0016 24.6 3.7 49 434-482 11-59 (120)
478 PF15297 CKAP2_C: Cytoskeleton 31.4 4.3E+02 0.0093 24.9 9.0 72 116-190 110-185 (353)
479 KOG1114 Tripeptidyl peptidase 31.1 7E+02 0.015 27.3 11.1 71 200-271 1212-1283(1304)
480 COG5108 RPO41 Mitochondrial DN 30.7 3.1E+02 0.0067 28.4 8.4 91 295-388 33-131 (1117)
481 PRK09857 putative transposase; 30.6 4.1E+02 0.0089 24.5 8.9 62 295-357 211-272 (292)
482 PRK13341 recombination factor 30.4 7E+02 0.015 26.6 16.5 46 306-353 170-223 (725)
483 COG2256 MGS1 ATPase related to 30.0 5.2E+02 0.011 25.1 14.6 123 219-357 191-321 (436)
484 PRK12798 chemotaxis protein; R 29.9 5.3E+02 0.011 25.1 22.2 198 268-468 125-333 (421)
485 PF09670 Cas_Cas02710: CRISPR- 29.8 5.2E+02 0.011 24.9 12.7 54 300-354 141-198 (379)
486 PF11123 DNA_Packaging_2: DNA 29.4 1.9E+02 0.0041 20.1 4.7 33 375-408 12-44 (82)
487 PHA02537 M terminase endonucle 29.2 4E+02 0.0087 23.5 9.7 35 217-252 81-115 (230)
488 smart00386 HAT HAT (Half-A-TPR 29.1 97 0.0021 16.3 4.3 14 125-138 3-16 (33)
489 PF12926 MOZART2: Mitotic-spin 28.9 2.3E+02 0.0049 20.5 7.8 42 416-457 29-70 (88)
490 cd08789 CARD_IPS-1_RIG-I Caspa 28.5 2.2E+02 0.0049 20.3 7.1 61 98-165 22-82 (84)
491 PF09986 DUF2225: Uncharacteri 27.8 4.1E+02 0.0089 23.1 8.6 51 125-175 141-195 (214)
492 KOG3636 Uncharacterized conser 27.8 5.8E+02 0.013 24.9 14.9 37 249-285 177-213 (669)
493 PRK14958 DNA polymerase III su 27.7 6.5E+02 0.014 25.5 12.6 73 214-289 194-279 (509)
494 PF09670 Cas_Cas02710: CRISPR- 27.6 5.6E+02 0.012 24.7 13.8 55 118-174 140-198 (379)
495 PRK09462 fur ferric uptake reg 27.2 3.3E+02 0.0072 21.9 8.1 65 348-413 5-70 (148)
496 PRK13341 recombination factor 26.4 8.2E+02 0.018 26.1 17.8 81 290-371 259-344 (725)
497 COG4259 Uncharacterized protei 26.3 2.8E+02 0.006 20.7 6.3 59 415-475 57-115 (121)
498 KOG3807 Predicted membrane pro 26.1 5.5E+02 0.012 24.0 13.8 52 371-422 286-338 (556)
499 KOG2066 Vacuolar assembly/sort 26.1 8.2E+02 0.018 26.0 22.0 151 151-317 362-532 (846)
500 KOG4521 Nuclear pore complex, 25.9 9.9E+02 0.021 26.9 15.7 57 222-278 985-1044(1480)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-58 Score=476.51 Aligned_cols=398 Identities=21% Similarity=0.331 Sum_probs=366.1
Q ss_pred CCccchhHHHHHHHHHHhcC-CCchH--HHHHHHhhhccCcch---------------HHHHHHHHcccCCHHHHHHHHH
Q 010807 72 RKSEELESKELVRVLMRSFS-DKEPL--VRTLNKYVKVVRSEH---------------CFLLFEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 72 ~~~~~~~a~~l~~~l~~~~~-~~~~~--~~~l~~~~~~~~~~~---------------~~~l~~~l~~~~~~~~A~~~~~ 133 (500)
+.|...+|..+++.|.+... ..... ..++..+.+.+..++ +..++..+.+.|+++.|+++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45677888999998876531 11111 223344444433333 3456777888999999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+ +.|++++|+++|++|..
T Consensus 462 ~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~----k~G~~eeAl~lf~~M~~- 535 (1060)
T PLN03218 462 LVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA----RAGQVAKAFGAYGIMRS- 535 (1060)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HCcCHHHHHHHHHHHHH-
Confidence 999987 899999999999999999999999999999999999999999999999999 77889999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
.++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 78999999999999999999999999999999976 6799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++++.|.+.|+.||..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
+.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 452 LLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 452 ~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
++++|.+.|+.||..+|..++..|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999998654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-58 Score=477.46 Aligned_cols=368 Identities=17% Similarity=0.281 Sum_probs=350.2
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
+..+.+.|.+++|+.+|+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---- 483 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---- 483 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Confidence 3344455667888888888754 7999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++++|.++|++|.. .|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77889999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 276 SVLSRMKS--NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 276 ~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999986 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccchhhhhh
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 493 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~l~~ 493 (500)
+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|++.|..+.......++.+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988766655555543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-54 Score=447.13 Aligned_cols=382 Identities=17% Similarity=0.236 Sum_probs=209.4
Q ss_pred CCCccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHH
Q 010807 71 GRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSK 150 (500)
Q Consensus 71 ~~~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
.+.+...+|.+++..+....+.. .+......++..+.+.++++.|.+++..|.+.+ +.||..+|+.
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~-------------~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFT-------------LPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 34455666666666665432110 011122334444445555555555555555544 5555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (500)
++.+|++.|++++|.++|++|. .||..+|+++|.+|+ +.|++++|+++|++|.+ .|+.|+..+|+.++.+|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~----~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLV----DAGNYREAFALFREMWE-DGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHH----HCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHH
Confidence 5555555555555555555553 255555555555555 44445555555555554 34555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (500)
++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555532 35555555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFFL 469 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~ 469 (500)
||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|.+ .|+.|+..+|.
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 345555555555555555555555555555555555555555555555555555555555555543 35555555555
Q ss_pred HHHHHHhcCCCCCC
Q 010807 470 EALETFSSSLAGSQ 483 (500)
Q Consensus 470 ~ll~~~~~~g~~~~ 483 (500)
.++..+++.|..+.
T Consensus 467 ~li~~l~r~G~~~e 480 (697)
T PLN03081 467 CMIELLGREGLLDE 480 (697)
T ss_pred hHHHHHHhcCCHHH
Confidence 55555555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.7e-54 Score=441.13 Aligned_cols=365 Identities=18% Similarity=0.258 Sum_probs=348.5
Q ss_pred hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010807 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190 (500)
Q Consensus 111 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 190 (500)
....++..+.+.|++++|+++|++|...+++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34567788888999999999999999877688999999999999999999999999999999999999999999999999
Q ss_pred HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010807 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 270 (500)
+ +.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 169 ~----k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 169 V----KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred h----cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9 7788999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++| ..+|..+|+.+|.+|++.|+.++|..+|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 456999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 5799
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 492 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~l~ 492 (500)
.+|+.||.+|++.|+.++|.++|++|.+.|+.||..||..++.+|++.|..+.+......+.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877665555554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-53 Score=447.68 Aligned_cols=365 Identities=18% Similarity=0.222 Sum_probs=215.5
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
+..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.+++..+.+++..|.+.|+.||..+|+.+|.+|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~---- 233 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV---- 233 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh----
Confidence 333444556666666666665543 555555555555444444444444444444444444445555555555555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.
T Consensus 234 k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 234 KCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred cCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 5566777777777776 35667777777777777777777777777777777777777777776666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------------------------------HhCCCCCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-------------------------------MHSKEKPT 324 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------------------~~~~~~~~ 324 (500)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| .+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 66666666666666666666666666555555555555554 44444455
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------------
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK------------- 391 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------------- 391 (500)
..||+.++.+|++.|+.++|.++++.|.+.|+.|+..+|+.|+.+|+++|++++|.++|++|.+.++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 5555555555555555555555555555555555555556666666666666666666666643211
Q ss_pred --------------------------------------------------------------------------------
Q 010807 392 -------------------------------------------------------------------------------- 391 (500)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (500)
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence
Q ss_pred --CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHH
Q 010807 392 --DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-QNGIVPNKRFF 468 (500)
Q Consensus 392 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~ 468 (500)
.+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 234444555555556666666666666666666666666666666666666666666666666665 44666666666
Q ss_pred HHHHHHHhcCCCCCCCccchhh
Q 010807 469 LEALETFSSSLAGSQSGSAKTD 490 (500)
Q Consensus 469 ~~ll~~~~~~g~~~~~~~~~~~ 490 (500)
..++..+++.|..+.......+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666666655444443333
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-52 Score=436.55 Aligned_cols=407 Identities=18% Similarity=0.214 Sum_probs=341.5
Q ss_pred cccCcCCcCCCCccchhHHHHHHHHHHhc--CCCch-----------------------------------HHHHHHHhh
Q 010807 62 VWTRPRSKRGRKSEELESKELVRVLMRSF--SDKEP-----------------------------------LVRTLNKYV 104 (500)
Q Consensus 62 ~~~~~~~~~~~~~~~~~a~~l~~~l~~~~--~~~~~-----------------------------------~~~~l~~~~ 104 (500)
.|........+.+..++|..+++.+.+.. |+... ...++..|.
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 44444555677788899999998887543 33222 234455666
Q ss_pred hccCcchHHHHHH---------------HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010807 105 KVVRSEHCFLLFE---------------ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFS 169 (500)
Q Consensus 105 ~~~~~~~~~~l~~---------------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 169 (500)
+.++.+.+..+|+ .+.+.|++++|+++|+.|.+.+ +.||..+|+.++.+|++.|+.+.|.+++.
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666666555444 4455678888888888888776 78888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 170 EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 170 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.|.+.|+.||..+|+++|.+|+ +.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~----k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYL----SLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHH----hcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888 7778999999999987 578899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329 (500)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (500)
|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988884 34666777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCC---------------------------------------------------
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTP--------------------------------------------------- 358 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------------------------------------------------- 358 (500)
.+|.+|++.|+.++|..+|++|.. ++.|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 777777777777777777777754 2334
Q ss_pred --------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-h
Q 010807 359 --------------SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-N 423 (500)
Q Consensus 359 --------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 423 (500)
|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +
T Consensus 539 ~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 539 RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 4556778888888999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCcc
Q 010807 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 486 (500)
Q Consensus 424 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~ 486 (500)
.|+.|+..+|+.++.+|.+.|++++|.+++++| .+.||..+|..++.+|...++.+-...
T Consensus 619 ~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 899999999999999999999999999999998 589999999999999988777654443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.7e-22 Score=215.92 Aligned_cols=349 Identities=12% Similarity=0.075 Sum_probs=259.7
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
+.|++++|+..|+.+.+.. +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++. ..|++
T Consensus 545 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~ 617 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL----AAGDL 617 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----HcCCH
Confidence 3456666666666665543 4455566666777777777777777777766542 345666777777776 55667
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
++|+..|+++.... +.+...+..+...+.+.|++++|..+|+.+.+.... +..++..+...+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777776432 445666777777777777777777777777665332 566777777777778888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 360 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 360 (500)
+.+... .+...+..+...+...|++++|.+.|+.+...+ |+..++..++.++...|++++|...++.+.+.. +.+.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 777643 366677777788888888888888888887754 344667777888888888888888888887764 4567
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
..+..+...|...|++++|.++|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.... +-+..++..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 788888888888999999999999888875 3578888888999999888 88999999887763 33566777888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccc
Q 010807 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
...|++++|.++++++.+.+.. +..++..+...+...|+.+.....
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999987654 888899999999988876554433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=7.1e-22 Score=212.62 Aligned_cols=369 Identities=11% Similarity=0.027 Sum_probs=308.8
Q ss_pred CccchhHHHHHHHHHHhcCCCch-HHHHHHHhhhccCcchHHHH------------------HHHHcccCCHHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEP-LVRTLNKYVKVVRSEHCFLL------------------FEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l------------------~~~l~~~~~~~~A~~~~~ 133 (500)
.+...+|...+..+++..+.... +..+...+.+.++.+.+... ...+.+.|++++|+.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566777777777765544332 23333344444554444433 344566799999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.+.+. .+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+. ..|++++|...|+++...
T Consensus 592 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 592 EAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----VMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhc
Confidence 99876 36678899999999999999999999999998763 345667778888887 778899999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
.+.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+.+.|++++|.+.|+.+...+ |+..++
T Consensus 665 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 665 --KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 256688999999999999999999999999988764 377888889999999999999999999999874 444777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+..++.+.|++++|.+.++.+.+..+ .+...+..+...|...|++++|...|+++.+.. +.+..+++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999988743 478899999999999999999999999999875 56788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|+ ++|+..++++.+... -+..++..+...+...|++++|..+|+++.+.+. .+..++..+..++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 889999999988643 3677888999999999999999999999999873 48999999999999999999999999
Q ss_pred HHHHH
Q 010807 454 KRMEQ 458 (500)
Q Consensus 454 ~~m~~ 458 (500)
++|.+
T Consensus 895 ~~~~~ 899 (899)
T TIGR02917 895 DKLLN 899 (899)
T ss_pred HHHhC
Confidence 99863
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.9e-21 Score=187.01 Aligned_cols=301 Identities=12% Similarity=0.033 Sum_probs=199.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQ 232 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 232 (500)
+...|++++|+..|.++.+.+ +.+..++..+...+. ..|++++|+.+++.+.......+ ....+..+...|.+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445556666666666665542 122334555555555 45556666666666554211111 12345666667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~ 308 (500)
.|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 23556667777777777777777777777766543322 1234556667777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|++.|+++.+... .+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888776532 245667777788888888888888888877653222245677788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|++
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 54 45556677888888888888888888887765 5787788877776654 45788888888888887777776
Q ss_pred H
Q 010807 466 R 466 (500)
Q Consensus 466 ~ 466 (500)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.9e-21 Score=186.98 Aligned_cols=309 Identities=10% Similarity=0.047 Sum_probs=257.2
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCc
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD---PSVYNALITAHLHTR 194 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~ 194 (500)
.....|++++|+..|+.+.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 3446699999999999999874 55677899999999999999999999999987543222 246777788888
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCC
Q 010807 195 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGM 270 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~ 270 (500)
..|++++|+.+|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+
T Consensus 119 -~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 -KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred -HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 778899999999999863 2567889999999999999999999999999887654332 245667778899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+++|...|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++.
T Consensus 196 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987642 356678888999999999999999999998764443356788999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLLFENSHNMGVT 427 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~ 427 (500)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.++++.++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9886 466667788999999999999999999998886 4788899988888775 56899999999999998877
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 010807 428 PDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 428 p~~~~~~~li~~~~~~g~ 445 (500)
|++. ..|.+.|.
T Consensus 351 ~~p~------~~c~~cg~ 362 (389)
T PRK11788 351 RKPR------YRCRNCGF 362 (389)
T ss_pred CCCC------EECCCCCC
Confidence 7765 33555554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.2e-18 Score=177.15 Aligned_cols=354 Identities=10% Similarity=-0.026 Sum_probs=277.8
Q ss_pred ccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 010807 106 VVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYN 184 (500)
Q Consensus 106 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 184 (500)
.+.......++..+.+.|++++|+.+++...... +.+...+..++..+...|++++|+..|+++.+. .| +...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~ 114 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVL 114 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 3444455667777888899999999999998874 555666777778888899999999999999886 44 455666
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
.+...+. ..|++++|+..|++..... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..
T Consensus 115 ~la~~l~----~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~ 186 (656)
T PRK15174 115 LVASVLL----KSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LS 186 (656)
T ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HH
Confidence 6667777 7788999999999998642 5567788899999999999999999999887765443 3333333 34
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK- 343 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 343 (500)
+...|++++|...++.+.+....++...+..+..++.+.|++++|+..+++..+..+ .+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhh
Confidence 788999999999999988765444555556667888899999999999999988643 367888889999999999986
Q ss_pred ---HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 344 ---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 344 ---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|...++...+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..+|.+.|++++|+..|++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 799999998864 34577899999999999999999999999998753 3577888899999999999999999999
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010807 421 SHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 476 (500)
Q Consensus 421 m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 476 (500)
+... .|+.. .+..+..++...|+.++|...|++..+..-.-....|...+.++.
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 8876 45543 344456788999999999999999887632222334444444443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.3e-16 Score=159.87 Aligned_cols=338 Identities=11% Similarity=0.008 Sum_probs=255.8
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC------------------ 176 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------ 176 (500)
+-..+.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+..|......+-
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 243 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFA 243 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 4445566799999999999998864 55678899999999999999999876655432210
Q ss_pred ----------CCC----HHHHHHHHHH-----------------------HHcCc------chHHHHHHHHHHHHHhhcC
Q 010807 177 ----------RPD----PSVYNALITA-----------------------HLHTR------DKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 177 ----------~p~----~~~~~~li~~-----------------------~~~~~------~~~~~~~~a~~~~~~~~~~ 213 (500)
.|. .......... +...+ ...+.+++|++.|++....
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 244 ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 010 0000000000 00000 0235788999999998864
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 214 ERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292 (500)
Q Consensus 214 ~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 292 (500)
....| ....|+.+...+...|++++|+..|+...+.... +...|..+...+...|++++|...|++..+.... +...
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~ 401 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDI 401 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 32233 4567888888999999999999999999876432 4668888889999999999999999999877433 6788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
|..+...+...|++++|+..|++.++..+ .+...+..+..++.+.|++++|...++...... +.+...++.+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 88999999999999999999999988643 367778888999999999999999999988753 4457889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVS------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
.|++++|++.|+...+.....+.. .++..+..+...|++++|..++++..... +.+...+..+...+.+.|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 999999999999988754321111 12222333445799999999999988764 33455788899999999999
Q ss_pred HHHHHHHHHHHHC
Q 010807 447 ELVQKLLKRMEQN 459 (500)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (500)
++|.++|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.3e-16 Score=162.29 Aligned_cols=290 Identities=10% Similarity=-0.026 Sum_probs=237.7
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 198 (500)
...|++++|++.|+.+.+.. +.+...+..+...+...|++++|...|++..+. .| +...+..+...+. ..|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~----~~g 158 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV----LMD 158 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH----HCC
Confidence 34799999999999998874 566788999999999999999999999999875 34 4567777777877 778
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..+
T Consensus 159 ~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 159 KELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred ChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999886532 3334444443 347889999999999999887754445556666678899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 279 SRMKSNQCKPDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 279 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+++.+.... +...+..+...|...|++++ |+..|++..+..+ .+...+..+...+...|++++|...++...+.
T Consensus 236 ~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 236 ESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987543 67788889999999999986 8999999988643 37789999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
. +.+...+..+..++...|++++|...|+.+.+.+.. +...+..+..++...|++++|...|++..+.
T Consensus 314 ~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 314 H-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 345667888899999999999999999999986532 2344555677899999999999999998875
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-17 Score=155.98 Aligned_cols=350 Identities=14% Similarity=0.129 Sum_probs=238.4
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 192 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 192 (500)
+-..+...|++++|+..|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+-+.-+.+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 5556667799999999999998864 446788999999999999999999998888764 4654433332222221
Q ss_pred --Cc---------------------------chHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010807 193 --TR---------------------------DKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNAL 242 (500)
Q Consensus 193 --~~---------------------------~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 242 (500)
.. ...|+.-.|++.|++.... .|+ ...|-.|.+.|...+.+++|+..
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 00 0455666666666666543 333 44566666677677777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010807 243 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322 (500)
Q Consensus 243 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (500)
|......... ....+..+...|...|.+|.|+..+++..+.... -...|+.|..++-..|+..+|++.|.+.+....
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 6665543222 3455666666677777777777777777765322 345677777777777888888888877776422
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010807 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK-VSTLNA 400 (500)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 400 (500)
.-....+.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..|++.... +|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHh
Confidence 24566777777788888888888887777763 344 456777888888888888888888877764 333 567788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK-RFFLEALETFSSS 478 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 478 (500)
+...|-..|+.+.|++.+.+.+.. .|. ...++.|...|...|+..+|+.-++... .++||. ..|..++.+.--.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHH
Confidence 888888888888888888877765 343 5677888888888888888888888776 456665 3355555554444
Q ss_pred CCCC
Q 010807 479 LAGS 482 (500)
Q Consensus 479 g~~~ 482 (500)
..|.
T Consensus 504 cdw~ 507 (966)
T KOG4626|consen 504 CDWT 507 (966)
T ss_pred hccc
Confidence 4443
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=4.7e-16 Score=169.07 Aligned_cols=378 Identities=11% Similarity=0.041 Sum_probs=237.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchH-HHHHHHhhhccCcchHHHHHH--------------------------------HH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPL-VRTLNKYVKVVRSEHCFLLFE--------------------------------EL 119 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~--------------------------------~l 119 (500)
.+...+|...++..++..|+.... ..+-..+.+.++.+.+...++ .+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 466778888888888776654333 222233444444444433322 23
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcC-----
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHT----- 193 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~----- 193 (500)
.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|++.|++..+. .|+ ...+..+...+...
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHH
Confidence 35678889999999998874 556778888999999999999999999999875 343 33444444333210
Q ss_pred ---------------------------------cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010807 194 ---------------------------------RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVN 240 (500)
Q Consensus 194 ---------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 240 (500)
....|++++|++.|++..+.. +.+...+..+...|.+.|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 002234445555555544321 223444444555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCCHHHHHH
Q 010807 241 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII---------TFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~~~~~~a~~ 311 (500)
..++++.+.... +...+..+...+...++.++|+..++.+......++.. .+..+...+...|++++|++
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555555443221 22222233333444555555555554443221111111 11223445566677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
+++. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..|...|++++|++.++.+.+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6652 33456677778888899999999999999988864 44678888899999999999999999998876532
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TP---DSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPN 464 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 464 (500)
.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|...|++... .|+.|+
T Consensus 669 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 669 -DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred -CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 3566777788888899999999999999876431 12 234566667788899999999999988864 355433
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1.7e-15 Score=164.73 Aligned_cols=328 Identities=10% Similarity=0.066 Sum_probs=241.0
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH-----------
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNAL----------- 186 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l----------- 186 (500)
+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 445799999999999998864 5578899999999999999999999999998753221 11222222
Q ss_pred -HHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----
Q 010807 187 -ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV---- 261 (500)
Q Consensus 187 -i~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---- 261 (500)
...+. ..|++++|+..|+++.... +.+...+..+...+...|++++|++.|+++.+.... +...+..+
T Consensus 357 ~g~~~~----~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 357 QGDAAL----KANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 12333 6678999999999998743 556778888999999999999999999999875432 23333222
Q ss_pred --------------------------------------HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 262 --------------------------------------MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 303 (500)
Q Consensus 262 --------------------------------------l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (500)
...+...|++++|++.|++..+.... +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23345678888888888888876433 566777888888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----------------------------
Q 010807 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----------------------------- 354 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------- 354 (500)
|++++|+..++++.+..+. +...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999988765332 3333333333333444444444443322100
Q ss_pred ----------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 355 ----------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 355 ----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+.+...+..+...+.+.|++++|++.|+++.+..+ .+...+..++..|...|++++|++.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 1234455667788889999999999999999998753 46889999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 425 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
. +.+..++..+..++...|++++|.++++++...
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2 234566777888899999999999999998865
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=8.8e-16 Score=156.74 Aligned_cols=353 Identities=10% Similarity=-0.044 Sum_probs=266.7
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcc
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRD 195 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 195 (500)
..+.+.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.++..++. .| +...|..+-.++.
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~---- 205 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD---- 205 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH----
Confidence 3455679999999999998874 567888999999999999999999999999886 34 4567777777887
Q ss_pred hHHHHHHHHHHHHHhhcCCCCC-------------------------------CCHHHHHHH------------------
Q 010807 196 KAKALAKALGYFQKMKGMERCK-------------------------------PNIVTYNIL------------------ 226 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~l------------------ 226 (500)
..|++++|+..|.......+.. |........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 6677888876665443211110 000000000
Q ss_pred ---------HHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC
Q 010807 227 ---------LRAC------AQARNVDQVNALFKELHESI-LAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 289 (500)
Q Consensus 227 ---------l~~~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 289 (500)
+..+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.... +
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 0000 12357889999999998765 233 4566888888899999999999999999886432 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
...|..+...+...|++++|+..|++.++... .+..+|..+...+...|++++|...|+...+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 66888889999999999999999999988643 367889999999999999999999999999864 3457778889999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHHc
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----DSS-TYKLLYKAYTKA 443 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~ 443 (500)
+.+.|++++|+..|+...+.. +-+...|+.+..++...|++++|+..|++.....-.. +.. .+...+..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998864 3468899999999999999999999999988753211 111 122222233447
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCCCCC
Q 010807 444 NMKELVQKLLKRMEQNGIVPNK-RFFLEALETFSSSLAGSQS 484 (500)
Q Consensus 444 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~ 484 (500)
|++++|..++++..+.. |+. ..+..+...+...|+.+..
T Consensus 522 ~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 522 QDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999999988654 444 4577778888887776544
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-17 Score=155.97 Aligned_cols=360 Identities=14% Similarity=0.121 Sum_probs=284.0
Q ss_pred cCCCCccchhHHHHHHHHHHhcCCC-chHHHHHHHhhhccCcchHHHHHHH------------------HcccCCHHHHH
Q 010807 69 KRGRKSEELESKELVRVLMRSFSDK-EPLVRTLNKYVKVVRSEHCFLLFEE------------------LGKSDKWLQCL 129 (500)
Q Consensus 69 ~~~~~~~~~~a~~l~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~------------------l~~~~~~~~A~ 129 (500)
..+.+|...+|..+++..++..++- +....+-..+...++.+.+...+.. +...|+..+|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 3345677778888888887766433 3344445555555655554432211 22347788888
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHHHHHHHHHH
Q 010807 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQ 208 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 208 (500)
..|-+..+.. +.=+..|+.|...+...|+...|+..|++..+. .|+ ...|-.|-..|. ..+.+++|+..|.
T Consensus 205 ~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k----e~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 205 ACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK----EARIFDRAVSCYL 276 (966)
T ss_pred HHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH----HHhcchHHHHHHH
Confidence 8887776643 223567999999999999999999999999874 454 356777777777 7888999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC
Q 010807 209 KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 288 (500)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 288 (500)
+..... +-..+.+..|.-.|...|..|.|+..|++.++..+. =...|+.|..++-..|+..+|.+.+.+.......
T Consensus 277 rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 277 RALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred HHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 988642 445778899999999999999999999999876433 3578999999999999999999999999876433
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECI 366 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 366 (500)
-....+.|...|...|.+++|..+|....+- .|. ...++.|...|.+.|++++|...+++.+. +.|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 5677899999999999999999999998874 343 56799999999999999999999999987 4676 6789999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANM 445 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 445 (500)
...|-..|+++.|...+.+.+..++. -...++.|...|-..|+..+|+.-|++..+. +|| +..|..++.+.----+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999987643 2678999999999999999999999998875 666 4567677665543333
Q ss_pred HH
Q 010807 446 KE 447 (500)
Q Consensus 446 ~~ 447 (500)
|.
T Consensus 506 w~ 507 (966)
T KOG4626|consen 506 WT 507 (966)
T ss_pred cc
Confidence 33
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=7.5e-14 Score=145.32 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=155.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhc
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLPTFNSMIINYGKA 338 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 338 (500)
..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456778999999999999887532 332 22235678899999999999999987653321 134566677788899
Q ss_pred CCHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKY-----------TPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999887531 123 2345667778889999999999999998865 4468899999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
+...|++++|++.+++..... +-+...+...+..+...|++++|..+++++.+. .|+......+=+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~ 468 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLAR 468 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 999999999999999988864 334667777777889999999999999999974 455444433333
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=6.6e-14 Score=145.76 Aligned_cols=387 Identities=10% Similarity=0.011 Sum_probs=270.8
Q ss_pred HHHHhcCCCchHHHHHHHhhhccCcch--HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHH
Q 010807 85 VLMRSFSDKEPLVRTLNKYVKVVRSEH--CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTR 162 (500)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 162 (500)
.|.....+.+....+...+........ ...+...+.+.|++++|+++|+...+.. +.+...+..++..+...|+.+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 333334555555555555543222222 3456667788899999999999988863 556777888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010807 163 LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 242 (500)
Q Consensus 163 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 242 (500)
+|+..+++..+. .|+...+..+..++. ..|+.++|+..++++.+.. +.+...+..+..++...+..+.|++.
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~----~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYK----RAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999876 343322666666666 6778999999999998642 55666777788888889999999998
Q ss_pred HHHHHhCCCCCCH------HHHHHHHHHHh-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHhc
Q 010807 243 FKELHESILAPDI------YTYNGVMDAYG-----KNGMI---KEMESVLSRMKSN-QCKPDII-TFN----LLIDSYGK 302 (500)
Q Consensus 243 ~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~ 302 (500)
++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 876654 2221 11222222222 22234 7788888888854 2223221 111 11334567
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~ 378 (500)
.|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999887543 332 22225778999999999999999987653111 13456677778899999999
Q ss_pred HHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 379 AREIFDELSKLGK-----------DMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 379 A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999987532 123 2355677888999999999999999998764 446788899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCCCCCccch
Q 010807 445 MKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+.++|++.+++..+.. |+ ...+......+...+++.......
T Consensus 408 ~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 408 WPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999988654 55 455555555666666655444333
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.4e-14 Score=128.28 Aligned_cols=307 Identities=14% Similarity=0.162 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+-+..+|..+|.++++....+.|.++|.+-.+...+.+..+||.+|.+-. +....+++.+|.. ..+.||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EMis-qkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------YSVGKKLVAEMIS-QKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------hhccHHHHHHHHH-hhcCCchH
Confidence 33567899999999999999999999999998888999999999998765 4445788889987 57899999
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHHHh----CCCCC----
Q 010807 222 TYNILLRACAQARNVDQ----VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE-MESVLSRMKS----NQCKP---- 288 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~----~~~~~---- 288 (500)
|+|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 56788999999999999999999999999888755 4455555443 22322
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 361 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 361 (500)
|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-+-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 45567778888888888888888776554221 2222 2346667777788888888888888888777778888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--h------h-----HHHHH-------HH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LP--T------E-----ADLLF-------EN 420 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--~------~-----A~~~~-------~~ 420 (500)
+...++++....|.++-.-++|.+++..|...+...-.-++..+++.. +. . . |..++ .+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888887776555555555555555443 11 0 0 01111 11
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 421 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 421 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|.+. .......+.++..+.+.|..++|.+++....+.
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2222 233445555566666777777777777666544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=3.1e-13 Score=138.35 Aligned_cols=377 Identities=12% Similarity=0.095 Sum_probs=273.9
Q ss_pred CCCccchhHHHHHHHHHHhcCCCc-hHHHHHHHhhhccCcchHHHHHH------------------HHcccCCHHHHHHH
Q 010807 71 GRKSEELESKELVRVLMRSFSDKE-PLVRTLNKYVKVVRSEHCFLLFE------------------ELGKSDKWLQCLEV 131 (500)
Q Consensus 71 ~~~~~~~~a~~l~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~------------------~l~~~~~~~~A~~~ 131 (500)
-+.|...+|...+..+++..|... .+.+.+..+...++.+.+...++ .+...|++++|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346777899999999988776653 33344555555555555544333 33445899999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhh
Q 010807 132 FRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK 211 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~ 211 (500)
|+.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..+ ++... ..++..+|++.++++.
T Consensus 125 y~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~--~~~~~~~AL~~~ekll 196 (822)
T PRK14574 125 WQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNR--ATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHH--hcchHHHHHHHHHHHH
Confidence 99999875 556777888899999999999999999999875 5666666333 44422 2345555999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------------
Q 010807 212 GMERCKPNIVTYNILLRACAQARNVDQVNALFK----------------------------------------------- 244 (500)
Q Consensus 212 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----------------------------------------------- 244 (500)
+.. +.+...+..+..+..+.|-...|.++..
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 642 4456666777777776666555544433
Q ss_pred -HHHhC-CCCCCH-H----HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 245 -ELHES-ILAPDI-Y----TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317 (500)
Q Consensus 245 -~m~~~-g~~p~~-~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (500)
.+... +..|.. . ...-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|+++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 22211 111211 1 1123345677888999999999999988876566678889999999999999999999987
Q ss_pred hCCC-----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-----------CC--C-HHHHHHHHHHHhccCCHHH
Q 010807 318 HSKE-----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-----------TP--S-FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 318 ~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~--~-~~~~~~li~~~~~~~~~~~ 378 (500)
.... .++......|.-+|...+++++|..+++.+.+... .| | ...+..++..+.-.|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6431 23444567888999999999999999999987321 12 2 2234556777888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|++.++++.... +-|......+...+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+...+
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999998875 4589999999999999999999999997766652 33566777888888999999999999888765
Q ss_pred C
Q 010807 459 N 459 (500)
Q Consensus 459 ~ 459 (500)
.
T Consensus 513 ~ 513 (822)
T PRK14574 513 R 513 (822)
T ss_pred h
Confidence 4
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3e-14 Score=127.71 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+.+..+|.+||.+.|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 44678999999999999999999999999988888889999999997654322 26888999999999999999999
Q ss_pred HHHHhccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHh----CCCC---C-CHHHH
Q 010807 297 IDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK-AEYVFQKMTA----MKYT---P-SFITY 363 (500)
Q Consensus 297 i~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~---~-~~~~~ 363 (500)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.+++. ..++ | |...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998864 56778899999999999999999999999888755 4444444433 2222 2 45667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLG----KDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889999999998877665411 2232 233566777888888899999999999988888999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
+++....|.++-.-+++.+|...|..-+...-..++.-+++..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999987777777777777777654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=5.4e-12 Score=132.07 Aligned_cols=325 Identities=11% Similarity=0.017 Sum_probs=236.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCcc-----
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALITAHLHTRD----- 195 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~----- 195 (500)
+...++.+.++.|.+.. +-+......+.-...+.|+.++|.++|+..... .-.++....+-++..|.....
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55566666666666652 346677777777888899999999999988652 122344444456666654321
Q ss_pred ----------------hHHHHHHHHHHHHHhhcCCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 196 ----------------KAKALAKALGYFQKMKGMER-CKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 196 ----------------~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
-.|...++....+......+ .++ +...|..+..++.. ++.++|+..+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 02333222222222222111 144 67788888877776 78888999888776653 5554
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
....+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+..+. +...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 4444455557899999999999998655 344455667777888999999999999999876422 3344444444555
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+..+ -+...++.+..++...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999885 46788899999999999999999999999998763 367888999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 417 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 417 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+++..+.. +-+...+..+..++...|++++|...+++..+.
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998864 346778899999999999999999999999865
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=1.2e-11 Score=126.90 Aligned_cols=384 Identities=10% Similarity=0.044 Sum_probs=271.0
Q ss_pred CCCchHHHHHHHhhhccCcc--hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010807 91 SDKEPLVRTLNKYVKVVRSE--HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLF 168 (500)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 168 (500)
++..+....+....+..... ....++..+...|+.++|+..+++.... .+........+...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555666666555544333 2446667777779999999999998832 2333444444567899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010807 169 SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248 (500)
Q Consensus 169 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 248 (500)
+++.+... -+...+..++..+. ..++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 126 ~kaL~~dP-~n~~~l~gLa~~y~----~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 126 QSSLKKDP-TNPDLISGMIMTQA----DAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHh----hcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99998632 23455556666666 678899999999999864 56666665555555556677679999999998
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHH------------------------------------------------HHHHH
Q 010807 249 SILAPDIYTYNGVMDAYGKNGMIKEME------------------------------------------------SVLSR 280 (500)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~g~~~~a~------------------------------------------------~~~~~ 280 (500)
.... +...+..++..+.+.|-...|+ .-++.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 7543 5555555555555554333333 33333
Q ss_pred HHhC-CCCCCH-H----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 281 MKSN-QCKPDI-I----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 281 m~~~-~~~~~~-~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+... +-.|.. . ...-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 3321 111221 1 122344567788999999999999998887666778889999999999999999999998764
Q ss_pred C-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcCChhhHH
Q 010807 355 K-----YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----------DM--KV-STLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 355 ~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~~~~A~ 415 (500)
. ..++......|.-+|...+++++|..+++.+.+..+ .| |- ..+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 123444467899999999999999999999987322 12 22 23445677788999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCCCCCccch
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+.++++.... +-|......+...+...|...+|.+.++..... .|+ ..+.......+-..+.+.......
T Consensus 437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999998764 558889999999999999999999999766644 454 344556666666666665554333
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=1.7e-12 Score=135.73 Aligned_cols=341 Identities=10% Similarity=-0.020 Sum_probs=239.3
Q ss_pred CccchhHHHHHHHHHHhcCC---CchHH-HHHHHhhhccCcchHHHHHHH---Hcc------cCCHHHHHHHHHHHHHcc
Q 010807 73 KSEELESKELVRVLMRSFSD---KEPLV-RTLNKYVKVVRSEHCFLLFEE---LGK------SDKWLQCLEVFRWMQKQR 139 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~---~~~~~-~~l~~~~~~~~~~~~~~l~~~---l~~------~~~~~~A~~~~~~~~~~~ 139 (500)
.|+..+|..+++......++ +.++. ++...+.+.....+...++.. +.. .|++.++....+.....-
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 45566777777766653222 12344 556666666554333333222 111 244444444444444332
Q ss_pred CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC
Q 010807 140 WY-IA--DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 216 (500)
Q Consensus 140 ~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (500)
.. ++ +...|..+..++.. ++.++|+..|.+.... .|+......+...+. ..|++++|+..|+++...
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----~~Gr~eeAi~~~rka~~~--- 538 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----QVEDYATALAAWQKISLH--- 538 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHhcc---
Confidence 22 34 67778888888877 8888899988887765 466544333333334 677899999999988642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+|+...+..+...+.+.|+.++|...+++..+.... +...+..+.....+.|++++|...+++..+. .|+...+..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 455556777788889999999999999998876532 3333334444555669999999999999876 4567888899
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
..++.+.|++++|+..|++.....+. +...++.+..++...|++++|...++...+.. +-+...+..+..++...|++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999886433 67788888889999999999999999988864 34577888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
++|+..+++..+.... +..+.........+..+++.|.+-+.+.... .|+..
T Consensus 694 ~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTF--SFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--Cccch
Confidence 9999999999886532 3455556667777777788888877776554 44444
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=8.6e-13 Score=126.82 Aligned_cols=283 Identities=13% Similarity=0.063 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHHcC
Q 010807 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGYFQKMKGMERCKPNIVTYN--ILLRACAQAR 234 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g 234 (500)
.|++++|++.+....+.. ++...+ .++.+.. . ..|+++.|.++|.++.+. .|+...+. .....+...|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~-~llaA~aA~---~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVN-YLLAAEAAQ---QRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHH-HHHHHHHHH---HCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCC
Confidence 578888887777665532 122222 2222211 1 667788888888887652 44543222 3356777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFD 307 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~ 307 (500)
+++.|...++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+
T Consensus 168 ~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888776644 6677777788888888888888888888877554222 12333343334445566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
...++++.+.+. .+.++.....+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+.+.
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 666666665443 3447778888888999999999999999888874 4555322 2334445688999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 388 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.. +-|+..+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 765 346778888899999999999999999998876 68888888999999999999999998887654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=6.3e-12 Score=121.55 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=110.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hcc
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKR 303 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~ 303 (500)
...+...|+++.|...++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.+..+.......-..++ ...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444322 33444444555555555555555555555443321111101111111 111
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCCHH
Q 010807 304 QAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDNVS 377 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~ 377 (500)
+..++..+.+..+.+..+ +.+...+..+...+...|+.++|..++++..+.. ||... ...........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 222222223333332211 1255555566666666666666666666665542 22221 111111222345566
Q ss_pred HHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 378 RAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666543 2234 555666677777777777777777433333356666666777777777777777777766
Q ss_pred HH
Q 010807 456 ME 457 (500)
Q Consensus 456 m~ 457 (500)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=1.1e-11 Score=119.34 Aligned_cols=283 Identities=8% Similarity=0.032 Sum_probs=218.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCcchHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN--ALITAHLHTRDKAK 198 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~ 198 (500)
.|+|+.|.+.+....+.. ++... |-.......+.|+++.|...|.++.+. .|+...+. .....+. ..|
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l----~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL----ARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH----HCC
Confidence 499999998888766642 12233 433445558999999999999999875 56654443 2234455 678
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-------YTYNGVMDAYGKNGMI 271 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~ 271 (500)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 168 ~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 168 ENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8999999999998643 667888999999999999999999999999998765332 2333444444455566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
+...++++.+... .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++....+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6777777776543 2347778889999999999999999999999874 3444222 233444569999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 352 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764 456777889999999999999999999999985 48899999999999999999999999998654
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.1e-12 Score=123.74 Aligned_cols=291 Identities=12% Similarity=0.036 Sum_probs=212.2
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCcchHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS--VYNALITAHLHTRDKAK 198 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~ 198 (500)
..|+|+.|.+.+....+.. +.....+-.........|+.+.|.+.|.+..+. .|+.. ........+. ..|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l----~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILL----AQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHH----HCC
Confidence 3599999999998887753 223444555667888999999999999998765 34443 3333355555 677
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hhcCCHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN-GVMDAY---GKNGMIKEM 274 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~a 274 (500)
+++.|...++.+.+.. +.+...+..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..++.
T Consensus 168 ~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999998643 557788999999999999999999999999998765 333332 222222 333344444
Q ss_pred HHHHHHHHhCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHH
Q 010807 275 ESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF-NSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 275 ~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~ 350 (500)
.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+...++.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 456666555422 137888889999999999999999999999886443222111 1222223345778888888888
Q ss_pred HHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 351 MTAMKYTPSF--ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 351 m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77652 3334 566789999999999999999999655544568888899999999999999999999998643
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=8.4e-15 Score=134.52 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..++++.|+..++++...+ +-+...+..++.. ...+++++|.+++....+.. ++...+..++..+.+.++++++.
T Consensus 56 ~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred ccccccccccccccccccc--ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHH
Confidence 3444555555555554321 1233334444444 44555555555554443321 23334444445555555555555
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 276 SVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 276 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
++++.+.... ...+...|..+...+.+.|+.++|++.+++.++..+. |......++..+...|+.+++..+++...+.
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 5555544321 2234444555555555555555555555555553221 3444555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
. +.|...+..+..+|...|+.++|..+|++..+.. +.|+.+...+..++...|+.++|.++..+.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 2 2333344555555555555555555555555532 224555555555555555555555555443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=7.7e-15 Score=134.75 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|++++|++++++.......+.+...|..+...+...++++.|.+.++.+...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 778899999999654421111345556666777788899999999999999887655 56667777777 7999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+++.+..+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...+++..+.
T Consensus 98 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9998876653 466677888889999999999999999987543 3457788889999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
. +-|......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|++..... +.|.....
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 4 3357788899999999999999999998888764 4566788999999999999999999999988764 45888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 435 LLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 435 ~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+..++...|+.++|.++.++..+
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHT-----------------
T ss_pred cccccccccccccccccccccccc
Confidence 999999999999999998876643
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.3e-12 Score=122.35 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=186.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHcCCHHH
Q 010807 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQ 238 (500)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 238 (500)
+..+|...|...... +.-+..+...+-.+|. ..+++++|..+|+.+...... ..+..+|.+.+.-+-+.-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayF----El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~--- 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYF----ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA--- 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---
Confidence 356777777775543 2223344455666666 677777777777777654322 2345566666644322211
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 239 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
---+-+++.+.. +-...+|..+.++|.-+++.+.|++.|++..+.+.. ...+|+.+.+-+.....+|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 111222333322 225677888888888888888888888877765322 567777777777777888888888877754
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010807 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 398 (500)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 398 (500)
.... +-..|.-+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.|+|+++++++...+.+ |+..-
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 3111 23344455667778888888888888877754 345666677777778888888888888887776543 34433
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
-..+..+...+++++|+..++++++. .|+ ...|..+.+.|.+.|+.+.|+.-|--|.+..-+++.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 34555666778888888888887765 444 456667777888888888888777777665444443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5.4e-11 Score=116.72 Aligned_cols=350 Identities=11% Similarity=0.054 Sum_probs=262.4
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|++++|.+++.++.++. +.+...|.+|..+|-..|+.+++...+-..-.. .+-|...|..+-.... +.|.++
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~----~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSE----QLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHH----hcccHH
Confidence 499999999999999985 667788999999999999999998877655433 2346678887777766 888999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhhcCCHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----VMDAYGKNGMIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~a~~~ 277 (500)
.|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.....+.|..-+.. .+..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998753 56666666778889999999999999999988755334433333 34556667777889998
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------------------CCCHHHHH
Q 010807 278 LSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---------------------------KPTLPTFN 329 (500)
Q Consensus 278 ~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~ 329 (500)
++..... +-..+...++.++..|.+...++.|......+..... .++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887763 2223556778889999999999999988887766211 122222 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
-+..++......+....+.....+..+.| +...|.-+..+|...|++.+|+.+|..+.....--+..+|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334555566666666777777766443 4678899999999999999999999999986555568899999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcCC
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME--------QNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g 479 (500)
.|.+++|++.|+..+... +-+...-..|...+-+.|+.++|.+.+..|. ..+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998763 3345566667778889999999999999854 2345566555544455555555
Q ss_pred CCC
Q 010807 480 AGS 482 (500)
Q Consensus 480 ~~~ 482 (500)
+.+
T Consensus 541 k~E 543 (895)
T KOG2076|consen 541 KRE 543 (895)
T ss_pred hHH
Confidence 443
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.6e-11 Score=106.61 Aligned_cols=289 Identities=11% Similarity=0.042 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCC
Q 010807 159 GQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARN 235 (500)
Q Consensus 159 g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~ 235 (500)
.+.++|.++|-+|.+. .|..+ +.-+|-+.|- +.|.+++|+.+-+.+....+.+-+ ......|..-|...|-
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfR----sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFR----SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4556666666666552 22222 2222223332 555666666666666542211111 1233445566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI----ITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~ 311 (500)
+|.|+.+|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777777777664322 3456667777777777777777777777666544332 234455555556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
++.+..+...+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777665433 34444456667777788888888887777765444456677777788888888888877777776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHC
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQN 459 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 459 (500)
....-..+-..-....-.+.|..++.+-+.. +|+...+..|+..... .|...+-+..+++|...
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333344444444445556666666555554 6788888888776543 44566677777777654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-11 Score=111.45 Aligned_cols=310 Identities=12% Similarity=0.084 Sum_probs=207.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHH
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQ 232 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 232 (500)
++-.....+++..-.+.....|+......-+....+.. ...++++|+.+|+++...+... .|..+|..++-+ +
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y----~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY----NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh----hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 44445566666666666666666544443333333333 5667888888888877643222 245566666533 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
..+-.- ..+.+-.-.--+--..|...+.+-|+-.++.++|...|++..+.+.. ....|+.+.+-|....+...|++-
T Consensus 310 ~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 322111 11111110001123456667777788888888999999888877544 567788888888888888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
++..++-.+ .|-..|..|.++|.-.+.+.-|+-.|++..+-. +-|...|.+|..+|.+.+++++|++.|......| .
T Consensus 387 YRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 988887643 378888889999998888888888888888753 4568888899999999999999999998888876 2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MGV-TP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 466 (500)
.+...+..|...|-+.++.++|...|++-++ .|. .| ......-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3557888888888888888888888877554 232 22 1222233555677888888888766555433 45555
Q ss_pred HHHHHHHHHhc
Q 010807 467 FFLEALETFSS 477 (500)
Q Consensus 467 ~~~~ll~~~~~ 477 (500)
--..+++.+.+
T Consensus 542 eak~LlReir~ 552 (559)
T KOG1155|consen 542 EAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=3.8e-11 Score=118.63 Aligned_cols=340 Identities=13% Similarity=0.058 Sum_probs=190.1
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIAD-TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITA 189 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~ 189 (500)
++.+-+.....|+++.|...|-...+.. ..+ +..+--+..++.+.|+.+.+...|+.+.+. .||.. +...|-..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhH
Confidence 3344455566789999999988877653 222 444666888999999999999999998875 45544 44444444
Q ss_pred HHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHH
Q 010807 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE----LHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 190 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~ 265 (500)
|+..+......++|..++.+..... +.|...|-.+...+....-+.. +.+|.. |...+-.+.....|.+...+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 4433223445677777777776532 5566666666666655444333 555543 33445556777777777777
Q ss_pred hhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHhccCCHHHH---------------------------
Q 010807 266 GKNGMIKEMESVLSRMKSN---QCKPDI------ITFNLLIDSYGKRQAFDKM--------------------------- 309 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~~~~~~a--------------------------- 309 (500)
...|++++|...|+..... ...++. .+--.+....-..++++.|
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 7778777777777776544 111121 1111222222233333333
Q ss_pred -------HHHHHHHHhCCC-----------------------------------CCCHHHHHHHHHHHHh----------
Q 010807 310 -------EQVFKSLMHSKE-----------------------------------KPTLPTFNSMIINYGK---------- 337 (500)
Q Consensus 310 -------~~~~~~~~~~~~-----------------------------------~~~~~~~~~li~~~~~---------- 337 (500)
...++......- .+|..+.-.|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 333333322110 1122222222222221
Q ss_pred --cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 338 --ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 338 --~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
.+..++|+++|.+.+... +-|...-|-+.-+++..|++..|..+|.++.+... -...+|-.+.++|..+|+|..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 122345555555555543 33444555555666666666666666666666432 13455666666666666666666
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 416 LLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 416 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
++|+..... .-.-+......|.+++.+.|++.+|.+.+.......
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 666654332 333455566666666666666666666665555443
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=8e-11 Score=105.50 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=214.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 010807 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 237 (500)
.|++.+|+++..+-.+.+-.|- ..|..-..+.- ..|+.+.+-.++.+..+..+ .++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~----qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQ----QRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHH----hcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCch
Confidence 5888888888888776653332 22222233333 67778888888888876322 456667777777888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHH
Q 010807 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~ 310 (500)
.|..-++++.+.+.. +.........+|.+.|++..+..++.+|.+.|.-.+. .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 888888888777655 6677778888888888888888888888888765443 35666666666666666656
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..++..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..++..+..
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 666665443 444666777788888999999999999999888776655 222334566778777777777776642
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+-++..+.+|...|.+++.|.+|...|+...+. .|+..+|+.+..+|.+.|+.+.|.+..++..-.-.+|+
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 345688899999999999999999999977765 78999999999999999999999999888775444443
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2e-11 Score=106.00 Aligned_cols=285 Identities=13% Similarity=0.104 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 010807 182 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTY 258 (500)
Q Consensus 182 ~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 258 (500)
.|-.=++.+. ....++|.+.|-+|.+.+ +.+..+--+|.+.|.+.|..|.|+++.+.+.+..--+. ....
T Consensus 38 ~Yv~GlNfLL-----s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 38 DYVKGLNFLL-----SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred HHHhHHHHHh-----hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3444455553 345789999999998632 55666777899999999999999999999987521111 2334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIIN 334 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 334 (500)
..|..-|...|-+|.|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++...+..+.. ..|.-+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 55667788999999999999999886533 4556788999999999999999999999877655432 356667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 414 (500)
+....+.+.|..++.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777889999999999998865 3334455567788999999999999999999988777778899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
..++..+.+.. ++...-..+...-....-.+.|..++.+-.. -+|+..-|..++..-...+
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccc
Confidence 99999998863 4444444454443344445556655554443 3699999999988765443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=2.9e-10 Score=111.70 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=233.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHH-Hhhh------------------ccCcchHHHHHHHHcccCCHHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLN-KYVK------------------VVRSEHCFLLFEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~-~~~~------------------~~~~~~~~~l~~~l~~~~~~~~A~~~~~ 133 (500)
+|+..+|.+++.+++++.|........|. .|-. ..+.+.+..+-+...+.|.+.+|.-.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 47778999999999888755544433332 2333 3344455556666677788999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
+..+.. +++...+---+..|-+.|+...|.+-|.++.......|..-...++...++..-..++-+.|++.++.....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998874 677777777888999999999999999999887443344445555554443333566668899998888764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHHHHh
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA---------------------------PDIYTYNGVMDAYG 266 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---------------------------p~~~~~~~ll~~~~ 266 (500)
.+-..+...++.++..+.+...++.|......+.....+ ++... ..++-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 444566778899999999999999999988887762222 22222 12333444
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 267 KNGMIKEMESVLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
+....+....+.....+.. +.-+...|.-+.++|...|++.+|+++|..+......-+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4555555555555555554 33356677888888888888888888888887765555677888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 345 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK--------LGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 345 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+.. .+..|+....-.....+.+.|+.++-+.
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88888887753 23344555666777888888888888887542 2334444444445555666666655433
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.8e-12 Score=120.18 Aligned_cols=283 Identities=13% Similarity=0.038 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
++++|+..|+++..+. ..+..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+ ...---
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 4566677776655442 3334556666677777777777777777766531 01245566666654431 111111
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 281 (500)
-|.++.+.. +-.+.+|-++.+.|.-.++.+.|++.|++....... ...+|+.+..-+.....+|.|...|...
T Consensus 409 Laq~Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 409 LAQDLIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 122222222 234566777777777777777777777766654222 5566666666666666677777777666
Q ss_pred HhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 010807 282 KSNQCKPDIITFN---LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358 (500)
Q Consensus 282 ~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 358 (500)
... |...|+ -|...|.+.++++.|+-.|+...+-++. +.+....+...+.+.|+.++|++++++..... +.
T Consensus 482 l~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 482 LGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred hcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 543 333333 3455667777777777777776664333 45555556666666777777777777766644 22
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
|...--..+..+...+++++|+..++++++.- +-+..+|-.+...|.+.|+.+.|+.-|--+.+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 33333344555555677777777777776652 2345566666677777777777776666666543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.2e-10 Score=102.57 Aligned_cols=307 Identities=17% Similarity=0.115 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------------------cCcch
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-------------------------HTRDK 196 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-------------------------~~~~~ 196 (500)
..|...+-....++.+.|....|++.|......- +-.=..|..|...+. +....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3456666666667778889999998888766421 111111211111111 00002
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a 274 (500)
....++++.-.+.... .|.+-+...-+-...+.....|+++|+.+|+++.++.+- -|..+|+.++-.-....++
T Consensus 240 l~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--- 315 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--- 315 (559)
T ss_pred HHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH---
Confidence 3344445544444443 333333333333444445566777777777777666321 1455666555332221111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.++..-...--+--+.|+..+.+.|.-.++.++|+..|++.++.+.. ....|+.+..-|....+...|.+-++...+.
T Consensus 316 -s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 316 -SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred -HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 11111111101113346667777788889999999999999987544 6788999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|......| ..+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 5 6688999999999999999999999999999874 4589999999999999999999999999999877 44778999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 435 LLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 435 ~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.|.+.|-+.++.++|...|++..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988876
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=7.2e-11 Score=107.04 Aligned_cols=352 Identities=11% Similarity=0.072 Sum_probs=238.8
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CHHHHHHHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP------------DPSVYNALI 187 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~~li 187 (500)
.+.|++++|+..|+.+.+. .|+..+--.++-++.-.|+.++..+.|.+|......| +....+..|
T Consensus 287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 4569999999999998875 4676655556666667899999999999998753333 333333322
Q ss_pred HH-HHcCc--chHHHHHHHHHHHHHhhcCCCCCCCHH-----HHH----------------HHHHHHHHcCCHHHHHHHH
Q 010807 188 TA-HLHTR--DKAKALAKALGYFQKMKGMERCKPNIV-----TYN----------------ILLRACAQARNVDQVNALF 243 (500)
Q Consensus 188 ~~-~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~----------------~ll~~~~~~g~~~~a~~~~ 243 (500)
.. ..+.- ....+.++++-.--++.. .-+.|+.. ... .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11 11000 011223333333333322 11223211 000 1123467889999999988
Q ss_pred HHHHhCCCCCCHHHHHHHH------------------------------------HHHhhcCCHHHHHHHHHHHHhCCCC
Q 010807 244 KELHESILAPDIYTYNGVM------------------------------------DAYGKNGMIKEMESVLSRMKSNQCK 287 (500)
Q Consensus 244 ~~m~~~g~~p~~~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~m~~~~~~ 287 (500)
+-+.+..-+.-...-+.|- +....+|++++|.+.+++.....-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8776543221111111110 1122368899999999998876333
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
-....|| +.-.+-..|++++|++.|-++..- ...+..+...+...|....+...|++++.+.... ++.|+...+-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 2222233 233467789999999999887553 3347778888888999999999999998776553 456788999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK 446 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 446 (500)
..|-+.|+-..|.+.+-+--.. ++-+..+...|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999887655443 566888999999999999999999999998654 489999999988865 568999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 447 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 447 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
+.|..+++.... .++-|..++..+++-++..|..+
T Consensus 677 qka~d~yk~~hr-kfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 677 QKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh
Confidence 999999988764 57788889999999888777654
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=5.2e-10 Score=100.39 Aligned_cols=291 Identities=12% Similarity=0.077 Sum_probs=229.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|+|.+|.+....-.+.+ ......|..-+.+.-..|+.+.|-.++.+.-+.--.++...+-+...... ..|+++
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----NRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH----hCCCch
Confidence 599999999998877765 33466778888889999999999999999988633556666666667777 677788
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-------YTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a 274 (500)
.|..-.+++.+.. +.+.........+|.+.|++.....++..|.+.|.--|. .+|..++.-....+..+.-
T Consensus 171 aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 8988888887643 667889999999999999999999999999999876554 4577777777776666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
...++....+ .+-++..-.+++.-+.+.|+.++|.++..+..+.+..++.. ..-.+.+-++.+.-.+..+.-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh
Confidence 6677766544 33356666778888999999999999999998887766522 223455677777777777665553
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.++.++....-..|
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 334578899999999999999999999977775 5889999999999999999999999999876443333
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.4e-11 Score=108.43 Aligned_cols=361 Identities=16% Similarity=0.127 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
+...+|+..|+-+.+...+ |+... --.+.+.+.+..++.+|+++|+..+..-...+..+--.++.-..-..-+.|.++
T Consensus 215 dm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 4456666666666665533 33322 223445566666777777777666554222222222222222111111666777
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHH-------
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP------------DIYTYNGVM------- 262 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------------~~~~~~~ll------- 262 (500)
.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|..|+.....| +....+..|
T Consensus 294 dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 294 DAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 777777776653 5666654445555555677777777777776433222 111111111
Q ss_pred --------------------------------------------------------HHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 263 --------------------------------------------------------DAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 263 --------------------------------------------------------~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
.-+.+.|+++.|+++++-+.+..-
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 115677888888888777665432
Q ss_pred CCCHHHHHHHH--H----------------------------------HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 287 KPDIITFNLLI--D----------------------------------SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330 (500)
Q Consensus 287 ~~~~~~~~~li--~----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (500)
+.-...-+.|- . ....+|++++|.+.|++.+.....-....| .
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-n 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-N 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-H
Confidence 21111111110 0 001257778888888777654332222222 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
+.-.+...|+.++|++.|-.+... +.-+..+...+.+.|....+...|++++.+.... ++.|+.+..-|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 334456677888888877665442 2345666777778888888888888888776664 56678888999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cCCCCCCCccchh
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS-SSLAGSQSGSAKT 489 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~~ 489 (500)
-..|.+.+-+--.. ++-|..|...|..-|....-+++++.+|++.. -++|+..-|..++..|. ++|+.......-.
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88888877654433 45678888888888888888999999998765 68999999988776665 5666554444444
Q ss_pred hhhh
Q 010807 490 DLTR 493 (500)
Q Consensus 490 ~l~~ 493 (500)
++.|
T Consensus 685 ~~hr 688 (840)
T KOG2003|consen 685 DIHR 688 (840)
T ss_pred HHHH
Confidence 4433
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.1e-10 Score=115.29 Aligned_cols=271 Identities=8% Similarity=-0.052 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 010807 179 DPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ---------ARNVDQVNALFKELHE 248 (500)
Q Consensus 179 ~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~ 248 (500)
+...|...+.+..+. ....+.+++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445555555553211 114577899999999998643 3345566666555442 3458899999999988
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328 (500)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (500)
.... +...+..+...+...|++++|...|++..+.+.. +...+..+..++...|++++|+..+++..+..+. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7654 7778888888899999999999999999887533 5677888889999999999999999999886544 33333
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 44455566789999999999998765422245567778888899999999999999877653 22455566677777877
Q ss_pred CChhhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 409 GLPTEADLLFENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 409 g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
| ++|...++.+.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 47777777766531 12222222 44455667777777766 7777653
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=1.7e-11 Score=119.72 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=127.6
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.+...| +.|+..+|..+|.-|+..|+.+.|- +|.-|.-.....+...++.++.+.. ..++.+.+.
T Consensus 15 ~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----~And~Enpk--------- 79 (1088)
T KOG4318|consen 15 LHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----EANDAENPK--------- 79 (1088)
T ss_pred HHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----ccccccCCC---------
Confidence 333333 5666666666666666666666666 6666655555555555666555544 333333221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIIT 292 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~ 292 (500)
.|...+|+.|+.+|...||... .+..++ -...+...+...|.-.....++..+.-. +.-||...
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 4555566666666666666554 111111 1112223333444444444444433221 22233322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
. +.-....|.++.+++++..+...... . ++...++-+.... .+++...+.+...+ .|+..+|.+++..-.
T Consensus 145 ~---illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 A---ILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 1 12223345555555555443221100 0 0111122222221 12222222222221 356666666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
..|+++.|..++.+|.+.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+.++|.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666666666666666666665555544444433 55555556666666666666666666665555555443
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.4e-09 Score=99.78 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=165.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
.|+...|..-|+..++....++. .|.-+...|....+.++..+.|.+....+.. |..+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 46666677777777766544333 2666777788888888888888888877554 555666656666667888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
|++.+...+. +...|-.+.-+..+.++++++...|++.+++ ++--+..|+.....+...+++++|.+.|+..++....
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9888775332 5667777777777888999999999998876 3445788999999999999999999999988874322
Q ss_pred -------CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 393 -------MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 393 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.+.+..+++..-.+ +++..|..++.+.++.+ +-....|..|...-.+.|+.++|+++|++-...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223333344333333 88999999999998865 334678999999999999999999999987643
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.2e-10 Score=99.79 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
.+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.+++..+... .+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 344444444455555555555554443321 1344445555555555555555555555554422 23444555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 337 KARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
..|++++|...++....... ......+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 56666666666665554321 12234455566666667777777777776666432 24556666677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776655 233455566666666677777777776666543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.5e-10 Score=99.66 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 34567778888888899999999999888776432 5677778888888899999999999888876433 566777888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
..+...|++++|.+.+++....... .....+..+..++...|++++|...+....... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 8888899999999999988764322 234567777888889999999999999888754 33566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
++|...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988876 344667777788888889999999988887654
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.3e-08 Score=101.14 Aligned_cols=330 Identities=12% Similarity=0.086 Sum_probs=236.5
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 199 (500)
..+++..|+.+|....... ..+||+.+ .+...+.+.|+.+.|+..|....+. .|+...-...+..+-........
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHH
Confidence 3489999999999865432 24555432 3346678999999999999999875 44322211111111111124566
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
+.+++.++...-... ..|++..+.|.+-|.-.|++..+..+...+...... .-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 888888888876544 567788999999999999999999999998775421 1235588899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHHHHHHh
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQKMTA 353 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~ 353 (500)
|.+..+....--+..+--|...|.+.|+++.+...|+.+.... +.+..|...|...|...+ ..++|..++....+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9988876333223445678899999999999999999998863 346778888888887775 45667777777666
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CC
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELS----KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV 426 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 426 (500)
.- +.|...|-.+...+... +...++.+|..+. ..+.++.+...|.+...+...|++.+|...|+..... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 43 45677787777777654 4444477666544 3555577899999999999999999999999987754 12
Q ss_pred CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 427 TPDS------STYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 427 ~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+|. .+-..+.+..-..++++.|.+.|+...+.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2333 23444556666777888888888888754
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=2e-09 Score=108.30 Aligned_cols=270 Identities=12% Similarity=-0.005 Sum_probs=190.6
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcC-----cchHHHHHHHHHHHHHhh
Q 010807 143 ADTGIYSKLIAVMGK-----KGQTRLAMWLFSEMRNSGCRPDP-SVYNALITAHLHT-----RDKAKALAKALGYFQKMK 211 (500)
Q Consensus 143 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-----~~~~~~~~~a~~~~~~~~ 211 (500)
.+...|...+.+... .++.++|..+|++..+. .|+. ..|..+..++... ....+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 344555566655322 23468999999999875 5654 3444444333311 113466899999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 212 GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 212 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++..+.... +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 753 557888889999999999999999999999987644 5677888899999999999999999999987544 223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMY 370 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~ 370 (500)
.+..++..+...|++++|+..+++......+-+...+..+..++...|+.++|...+..+... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333444456668999999999999877643335666788888999999999999999887664 344 44455566677
Q ss_pred hccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 371 GYCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
...| ++|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 47888777766521 11212222 44455666777777666 7777654
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=4.8e-10 Score=97.73 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=150.2
Q ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 010807 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-NGVM 262 (500)
Q Consensus 184 ~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll 262 (500)
+.+-.+|. +.|.+.+|.+.|+..... .|-+.||..|-++|.+..+...|+.+|.+-.+. .|-.+|| .-+.
T Consensus 227 ~Q~gkCyl----rLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYL----RLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHH----HhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 33455555 556666666666666542 566667777777777777777777777665553 2333333 3444
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (500)
..+-..++.++|.++++...+... .++.....+...|.-.++.+.|+.+|+++++.|+. +...|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 556666777777777777666532 25555555666666667777777777777777765 6677777777777777777
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
-++.-|.+.+..--.|+ ..+|-.+.......||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 77777777666433343 445666777777778888888888777765533 466777777777777888888887777
Q ss_pred HHhC
Q 010807 421 SHNM 424 (500)
Q Consensus 421 m~~~ 424 (500)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 6653
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=3.7e-08 Score=93.84 Aligned_cols=326 Identities=10% Similarity=0.050 Sum_probs=198.1
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
+.|.+.+.++-|..+|....+- ++.+...|...+..=-..|..+.-..+|++....- +-....|-....-+- .
T Consensus 524 ~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w----~ 596 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW----K 596 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----h
Confidence 3445556666677777776664 45566677777777677777777777777777651 222233333333333 5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|++..|..++....+. .+.+...|-..+..-..+.++++|..+|.+.... .|+...|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 56677777777776642 2445667777777777777777777777776553 4455555555555555667777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 277 VLSRMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 277 ~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++++..+. -|+ .-.|-.+...+-+.++.+.|.+.|..-.+. ++-....|-.+...=-+.|..-+|..+++...-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77776664 233 334566666677777777777776655443 33345566666666666677777777777766654
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----------------------------CCCCHHHHHHHHHHHH
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-----------------------------KDMKVSTLNAMLEAYC 406 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~li~~~~ 406 (500)
+-+...|-..|++-.+.|..+.|..++.+....- ...|+.+.-++...|.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 4456677777777777777777776666554321 1224444455555555
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
....+++|.+.|.+....+ +-+..+|..+...+.+.|.-++-.+++.+...
T Consensus 829 ~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 5556666666666655543 22344555556666666655555555555543
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.6e-12 Score=82.48 Aligned_cols=50 Identities=36% Similarity=0.654 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.6e-07 Score=85.02 Aligned_cols=325 Identities=11% Similarity=0.081 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 202 (500)
..++.|..+|+...- ..|++..|-.....=-++|++..|..+|+...+. -.|...-..++.++++....+..++.
T Consensus 188 keieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 188 KEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred hHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655544 2356666666666666666666666666666543 22344444455555554446666777
Q ss_pred HHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 203 ALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNAL--------FKELHESILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 203 a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
|.-+|.-... .++.+ ...|......=-+-|+....... |+.+.+.+. .|-.+|--.+..-...|+.+
T Consensus 263 ar~iykyAld--~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 263 ARFIYKYALD--HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHH--hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHH
Confidence 7777766653 23333 44454444444445554433332 334444332 36677777777777889999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHH--------HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 010807 273 EMESVLSRMKSNQCKPDI--ITFNLLIDS--------YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG----KA 338 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 338 (500)
...++|++...+ ++|-. ..|...|-. =....+.+.+.++|+..++. ++...+||..+--.|+ +.
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 999999998876 33311 122222211 13468889999999988884 5556777776655554 56
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
.+...|..++...+ |..|...++...|..-.+.+++|.+..++++.++.++. +..+|......=...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78888999888765 45788899999999999999999999999999998743 6888888888888999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 419 ENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 419 ~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+-.++.. +......|...|..-...|.++.|..+++++.+..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9988753 22234566777777788999999999999999764
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=8.3e-10 Score=96.26 Aligned_cols=237 Identities=8% Similarity=-0.036 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|-+--+-+.++|.+.|.+.+|.+.|+.-.+. .|...||..|-+.|.+..+++.|+.++.+-.+. .+-|+....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 334444466888899999999999999887765 456678888889999999999999999888776 22244444567
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
...+...++.++|.++|+...+.. ..++.....+...|.-.++++.|...++++.+.|+ -+...|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 778888899999999999888763 34677777777788888999999999999999885 4778888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
|-++.-|.+....--.|+ ..+|-.+.......|++.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999988888776433333 5678888888888899999999998888765 3456788888888889999999999988
Q ss_pred HHHHC
Q 010807 455 RMEQN 459 (500)
Q Consensus 455 ~m~~~ 459 (500)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 77643
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.1e-09 Score=96.40 Aligned_cols=277 Identities=12% Similarity=0.035 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..+++.+..++++...+.. ++....+..-|..+...|+..+-..+=..|.+.-+. ...+|-.+.-.|.-.|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHH
Confidence 5667888888888887644 555666666677888888877777777777766433 6678888888888888889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.|.+....+.. =...|-...+.|.-.+..++|+..+...-+. .+-...-+--+.--|.+.+..+.|...|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 888887654322 2446778888888888888888888765543 11112223334556778888888888888877653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSK----LG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 429 (500)
+-|+..++-+.-.....+.+.+|..+|+.... .+ ...-..+++.|..+|.+.+.+++|+..+++.+... +-|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 45677777777777778888888888887662 11 11134568888888999999999999998887764 557
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 010807 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 481 (500)
..++..+.-.|...|+++.|.+.|.+.. .+.|+..+..+++..+......
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~~~~ 538 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIEDSEC 538 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhhhh
Confidence 8888888888888999999999888776 6788888888888776655333
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.8e-08 Score=98.19 Aligned_cols=295 Identities=12% Similarity=0.109 Sum_probs=206.5
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCc-
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR- 194 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~- 194 (500)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4456679999999999886654 45556778888899999999999999999999984 66666655554443 110
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 195 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
......+....+|+++... -|.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 0223577888889888753 34433333332222222233 3455666777788866 356666666665555555
Q ss_pred HHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 274 MESVLSRMKSN----Q----------CKPDII--TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 274 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
..+++...... + -.|+.. ++.-+...|...|++++|++++++.++..+ ..+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence 66666665432 1 124443 445567778889999999999999988532 247788888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcC
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST------L--NAMLEAYCMNG 409 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g 409 (500)
.|++.+|...++...... .-|...-+-.+..+.++|++++|.+++....+.+..|.... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998865 45677777788888999999999999998887664332222 2 44567888999
Q ss_pred ChhhHHHHHHHHHh
Q 010807 410 LPTEADLLFENSHN 423 (500)
Q Consensus 410 ~~~~A~~~~~~m~~ 423 (500)
++..|+..|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766543
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=9.8e-12 Score=80.42 Aligned_cols=50 Identities=38% Similarity=0.654 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777776777777777777666654
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=5e-07 Score=86.39 Aligned_cols=342 Identities=11% Similarity=0.058 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM----RNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
.-++.|..++.+.++. ++.+..+|-+....=-.+|+.+...+++++- ...|+..+...|-.=...|- ..|
T Consensus 420 etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e----~ag 493 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE----DAG 493 (913)
T ss_pred HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh----hcC
Confidence 4556777777777776 5677777877777777788888888877653 34566666555544444333 222
Q ss_pred HHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.+-.+..+....... |+ ..-..||+.-...|.+.+.++-|..+|...++--. -+...|......=-..|..+....
T Consensus 494 sv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred ChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHH
Confidence 233333333333321 11 11133455555555555555555555555544321 233444444444444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
+|++....-. -....|-....-+-..|+...|..++....+..+. +...|..-+..-.....++.|..+|.+....
T Consensus 572 llqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 5555554421 13333444444444455555555555555544322 4455555555555555555555555554442
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKL 435 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 435 (500)
.|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+...+-+.++.+.|.+.|..-.+. .|+ ...|..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHH
Confidence 344444444444444445555555555554443 1112334444444444444444444444433222 222 223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
|.+.=-+.|..-.|..++++..-++ +-+...|.+.|+.=-+.|+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCC
Confidence 3333334444444444444443322 1233334444444434333
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=3.2e-10 Score=110.97 Aligned_cols=274 Identities=15% Similarity=0.146 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 166 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245 (500)
Q Consensus 166 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 245 (500)
.++-.+...|+.|+..||..+|.-|| ..|+++.|- +|.-|.- ...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----TKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----ccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----
Confidence 35566777888898889999988888 667787777 7777765 455667778888888888888877766
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC
Q 010807 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPT 324 (500)
Q Consensus 246 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 324 (500)
.|...||.+|+.+|...|++.. |+...+ -.-.++..+...|.-.....++..+.-. +..||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 6788888899999988888765 222222 1223333444445444444444443211 22333
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
..+ .+.-....|-++.+..++..+.... ..|... +++-+.... .+++-..+.....+ .|++.+|.+++
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 332 3333445556666666665443221 011111 244333322 23333333333333 47888888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 010807 403 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 481 (500)
.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|..
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 8888889999999999999988888888888888766 777888888888888889999988888777777664443
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.4e-07 Score=86.70 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a 203 (500)
++..|..+|+...... ..+...|-..+.+=.++..+..|..+++.....=...|..-|.. + ......|++..|
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~----ymEE~LgNi~ga 160 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-I----YMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-H----HHHHHhcccHHH
Confidence 3444555555554433 22444455555555555555555555555443211111111111 1 111133444445
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
.++|++-.. ..|+...|++.|+.=.+-+.++.|..+|+...- +.|+..+|.-....=.+.|....+..+|+.
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555544443 245555555555554555555555555544432 224444444444444444444444444443
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=4.4e-09 Score=101.16 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-----CCC-CC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHES-----IL-AP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-----QCK-PD 289 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~-~~ 289 (500)
.+.+...|...+++++|..+|+++... |- .| -..+++.|-..|.+.|++++|...+++..+. |.. |.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 335555666666666666666665431 11 11 1244555555666666666666655554321 111 12
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC------
Q 010807 290 II-TFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK------ 355 (500)
Q Consensus 290 ~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------ 355 (500)
+. .++.+...|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++......
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 22 2455566667777777777777644321 0111 12456666666666666666666666554321
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 356 -YTPSFITYECIITMYGYCDNVSRAREIFDELSK----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 356 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
..-....++.+...|.+.+..++|.++|.+... .|+ +-...+|..|...|...|++++|.++.+..
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 111123445555555555555555555543322 111 112344555555555555555555555443
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=7.5e-08 Score=93.90 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=206.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH-HHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY-NILLR 228 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~ 228 (500)
...++...|++++|++.++.-... -+|...+ ......+. +.|+.++|..+|..+... .|+...| ..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDR---NPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 345667899999999999886543 4565544 44455555 778899999999999874 4555554 44444
Q ss_pred HHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 229 ACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 229 ~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
+..- ..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|++ .+|+.|-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 4422 235778889999887654 3333333332222222223 3456667777888865 356777777776
Q ss_pred cCCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHS----K----------EKPTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYEC 365 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ 365 (500)
..+.+-..+++...... + -.|+. .++..+...|...|++++|..+++..++. .|+ ...|..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 66666666676665432 1 12333 35566778899999999999999999986 455 778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH------H--HHHH
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST------Y--KLLY 437 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------~--~~li 437 (500)
-.+.+-+.|++.+|.+.++.....+.. |..+-+-.+..+.+.|++++|.+++......+..|-... | ....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999997754 788888888999999999999999999887765443211 2 3446
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 010807 438 KAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+|.+.|++..|++.|....+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 689999999988887766654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=2.4e-08 Score=96.11 Aligned_cols=244 Identities=18% Similarity=0.170 Sum_probs=180.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHHhC--
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-----I-LAPDIYTY-NGVMDAYGKNGMIKEMESVLSRMKSN-- 284 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~-- 284 (500)
.+.+.-..+...+...|...|+++.|+.+++...+. | ..|...+. +.+...|...+++++|..+|+++...
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344666666666999999999999999999887653 2 12333333 33667888999999999999988643
Q ss_pred ---CCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 285 ---QCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----K-EKPTL-PTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 285 ---~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|-. --..+++.|..+|.+.|++++|...+++..+- + ..+.+ .-++.++..|+..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 222 23456788888999999999998888765431 1 12222 346677788899999999999998765
Q ss_pred hC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 353 AM---KYTPS----FITYECIITMYGYCDNVSRAREIFDELSKL-----G--KDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 353 ~~---~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
+. -+.++ ..+++.|...|...|++++|.+++++++.. + ..-....++.|...|.+.+.+.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 42 12222 468999999999999999999999988751 1 1122456788899999999999999999
Q ss_pred HHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 419 ENSHN----MGV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 419 ~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+... .|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87543 332 233 4689999999999999999999988776
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=9.3e-08 Score=88.15 Aligned_cols=219 Identities=8% Similarity=-0.067 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4556666666666542222222 345667777777788888888888777776443 5677777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.|++..+.... +...|..+..++...|++++|++.|+...+..+. +. ........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765333 4556666777777777777777777777664332 22 11111222334566777777775544322
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---CCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSK---LGK---DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
.++...+ .+... ..|+...+ +.+..+.+ ..+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 22222 23333332 23333332 110 0123456666677777777777777777766554
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.3e-08 Score=90.91 Aligned_cols=285 Identities=11% Similarity=0.006 Sum_probs=172.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 222 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (500)
.+......-.+-+...+++.+..++++...+.. ++....+..-|.++...++ ..+-..+=.++.. ..+....+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~----~n~Lf~lsh~LV~--~yP~~a~s 314 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK----SNKLFLLSHKLVD--LYPSKALS 314 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc----cchHHHHHHHHHH--hCCCCCcc
Confidence 355556666666667777777777777766542 3444455555555653333 3333333333332 12445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSY 300 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~ 300 (500)
|-++.--|...|+..+|.+.|.....-... =...|-.....|+-.|..|+|...+...-+. |.. -+..| +.--|
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey 390 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEY 390 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHH
Confidence 777777777777777777777665432211 1245666666677777777777766655443 221 11122 23345
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--C----CCCHHHHHHHHHHHhccC
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--Y----TPSFITYECIITMYGYCD 374 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~~li~~~~~~~ 374 (500)
.+.+.++.|.++|.+.... .+.|+...+-+.......+.+.+|..+|+..+..- + .--..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 6667777777777776654 23366667776666666777777777776665210 0 012345677777777778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
.+++|+..+++..... +-+..++.++.-.|...|+++.|++.|.+.... .||..+...++..+..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 8888887777777654 336777777777777778888888887776653 6776666666665543
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=1.6e-08 Score=84.32 Aligned_cols=197 Identities=12% Similarity=0.034 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
+...|.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+-|++.+...+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445555666677777777777766666433 4556666666666677777777777666664332 4555666666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
..|++++|...|+.......-+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 6667777776666666532111 2456666666666667777777776666665432 2444555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+++.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666665553 666666666666666666666665544443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.1e-07 Score=87.78 Aligned_cols=228 Identities=14% Similarity=-0.022 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 233 ARNVDQVNALFKELHESI-LAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
.+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 346677777787777543 2222 356778888899999999999999999987544 688999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
+..|++..+..+. +..+|..+..++...|++++|...++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999885433 57788889999999999999999999998854 44322222223345678899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV--T-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
. .++. |. ........|+..++ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.+. |
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 2222 22 22333446666554 345554422 11 1 1245799999999999999999999999997653 3
Q ss_pred CHHHHHH
Q 010807 464 NKRFFLE 470 (500)
Q Consensus 464 ~~~~~~~ 470 (500)
|..-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 4444433
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=4.6e-07 Score=86.61 Aligned_cols=306 Identities=11% Similarity=-0.005 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (500)
...|..+...+...|+.+.+...+....+... .++...... +.+.... ..|++++|.+.+++.... .+.+...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--~~g~~~~A~~~~~~~l~~--~P~~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--IAGDLPKALALLEQLLDD--YPRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--HcCCHHHHHHHHHHHHHH--CCCcHHHH
Confidence 44556666666666777776666665543211 122211111 1111111 456677777777776642 23344444
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 224 NILLRACAQ----ARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 224 ~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
.. ...+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 42 222222 3444444444443 1122233 334445556777788888888888888776433 4566777777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEK-PTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITY-E--CIITMYG 371 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~ 371 (500)
+|...|++++|+..+++....... ++. ..|..+...+...|++++|..+++....... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 888888888888888877664321 222 3455677778888888888888888754322 1111111 1 2233333
Q ss_pred ccCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC------C--CHHHHHHHHHH
Q 010807 372 YCDNVSRAREI---FDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT------P--DSSTYKLLYKA 439 (500)
Q Consensus 372 ~~~~~~~A~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------p--~~~~~~~li~~ 439 (500)
..|..+.+.+. ......... ............++...|+.++|..+++.+...... . ..........+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 34433322222 111111100 111122235666777888899998888887653211 0 11122222335
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010807 440 YTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (500)
+...|++++|.+.+......
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 56889999999888877654
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-06 Score=80.56 Aligned_cols=383 Identities=12% Similarity=0.067 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHhh---hcc--CcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHH
Q 010807 79 SKELVRVLMRSFSDKEPLVRTLNKYV---KVV--RSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIA 153 (500)
Q Consensus 79 a~~l~~~l~~~~~~~~~~~~~l~~~~---~~~--~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 153 (500)
...++..+-+...+ +++..++.... ..+ +.+..+.-+-.+.+.++|++|+.+.+.-... ..+...+..-..
T Consensus 12 ~~~l~t~ln~~~~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHGKN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhccc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHH
Confidence 35667766554322 34433333322 221 1222223344455668888888555442211 111111122344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC----------------
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERC---------------- 216 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------------- 216 (500)
+..+.+..++|+..++. ..++.. +...--..+. +.|++++|+++|+.+.....-
T Consensus 88 c~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlY----rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLY----RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 55578888888888873 333332 3333333444 788899999999988542100
Q ss_pred -----------CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHhhc
Q 010807 217 -----------KPNIVTYNILL---RACAQARNVDQVNALFKELHESI-------------LAPDIY-TYNGVMDAYGKN 268 (500)
Q Consensus 217 -----------~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~ll~~~~~~ 268 (500)
.| ..+|..+- -.+...|++.+|+++++...+.+ +.-... .-..+.-.+...
T Consensus 159 l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 159 LQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 01 11222222 23456788888888887773221 000111 112334456678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCHH-HHHHHHH-----------------------------
Q 010807 269 GMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFD-KMEQVFK----------------------------- 314 (500)
Q Consensus 269 g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~-~a~~~~~----------------------------- 314 (500)
|+.++|.+++......... |.. .-|.|+..-....-++ .++..++
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776543 321 2222322211111111 0000000
Q ss_pred -----------HHHhC--CCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 315 -----------SLMHS--KEKPTLPTFNSMIINYGK--ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 315 -----------~~~~~--~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
+.... +..| ...+.+++..+.+ ...+.++..++...-+....-...+.-.++......|+++.|
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 00000 1111 2334444443332 223566666666655543222244556677788899999999
Q ss_pred HHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHHcCC
Q 010807 380 REIFD--------ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSS----TYKLLYKAYTKANM 445 (500)
Q Consensus 380 ~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~ 445 (500)
.+++. .+.+.+.. +.+..++...+.+.++-+.|..++.+.+.. .-.+... ++..+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 55555544 456667788888888888888888776542 0122223 33333344467899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 010807 446 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
.++|..+++++.+. .++|..+...++.+|++...
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCH
Confidence 99999999999975 36788999999999987643
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-06 Score=79.85 Aligned_cols=285 Identities=9% Similarity=0.002 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHH
Q 010807 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 205 (500)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~ 205 (500)
..|...+-.+.....++.|+.....+...+...|+.++|+..|+..... .|+..+---+...+.. ..|+++....
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---~eg~~e~~~~ 287 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---QEGGCEQDSA 287 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH---hccCHhhHHH
Confidence 3344444444333335666667777777777777777777777766542 3433221111111111 4445555555
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
+...+.... +.+...|-.-+.......++..|+.+-+..++.... +...|..-...+...|+.++|.--|.......
T Consensus 288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 544444211 233344444444455566666676666666554322 34444444455666667777666666665442
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHhHHHHHHHHHHhCCCCCC-HHH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYGK-ARLQGKAEYVFQKMTAMKYTPS-FIT 362 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~~~-~~~ 362 (500)
. -+..+|.-|+++|...|.+.+|.-.-+...+. ...+..+.+.+. ..|.. ...-++|..+++.-... .|+ ...
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 1 25566777777777777777666555544433 222444444332 22221 22235666666655542 344 344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+.+...|...|..++++.+++..... .||....+.|...+...+.+++|++.|......
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 555566666667777777777666653 356666667777777677777777766666554
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.6e-07 Score=86.75 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
|--+...|....+.++..+.|+...+.+.. |..+|..-...+.-.+++++|..=|++....... +...|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence 444444555555555555555555554433 3444444444444455555555555555544322 34444444444455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-----CCHHH--HHHHHHHHhccCC
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-----PSFIT--YECIITMYGYCDN 375 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~--~~~li~~~~~~~~ 375 (500)
.+++++++..|++.+.. .+..+..|+.....+...++++.|.+.|+..++.... .+..+ .-.++.. .-.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence 55555555555555544 3334555555555555555555555555555442100 01111 1111111 12266
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+..|.+++++..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665433 34456666666666667777776666644
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=2.5e-07 Score=77.43 Aligned_cols=199 Identities=11% Similarity=-0.040 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
+..-|.-.|...|+...|..-+++.++.... +..++..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445555666667777777766666665433 4556666666666677777777766666655333 5555666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6667777777666665542222 23466666666666677777777776666643 222444555666666666776676
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..++.....+. ++..+.-..|..-...|+.+.+-++=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666543 55666656666666666666665555554443
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=8.4e-06 Score=78.26 Aligned_cols=322 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.++++|++.|......+ +.|..+|.-+.-.-++.|+++.....-..+.+. .|. ...|..+..++. -.|++.
T Consensus 89 K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~----L~g~y~ 160 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQH----LLGEYK 160 (700)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHH----HHHHHH
Confidence 34566666666555543 445555555555555555555555555555443 222 223333333333 556666
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILL------RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
.|..+.+.........|+...|.-.. ....+.|..+.|.+.+..-... +.-....-.+-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 66666666654332234444443322 2334455566666555443222 1101112233345566777777777
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHH-HHHHHH----------------------------------HhC
Q 010807 276 SVLSRMKSNQCKPDIITFN-LLIDSYGKRQAFDKME-QVFKSL----------------------------------MHS 319 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~-~~~~~~----------------------------------~~~ 319 (500)
.++..+... .||..-|. .+..++.+-.+.-++. .+|... .+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 777777766 34444433 3334443222222222 333322 222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHhccCCHHHHHHHH
Q 010807 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT----AMK----------YTPSFIT--YECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~li~~~~~~~~~~~A~~~~ 383 (500)
|+++ ++..+...|-.-...+-..++.-.+. ..| -+|+... +-.++..+-..|+++.|...+
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2221 12222222211111111111111111 111 0344333 345666777788888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010807 384 DELSKLGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 384 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 461 (500)
+....+- |+ +..|..=.+.+...|++++|..++++..+.+ .+|...-.--..-..+....++|.++.....+.|.
T Consensus 395 d~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 7777653 32 3344444567777788888888888777665 45554444555555677777888877777777664
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=3.1e-05 Score=74.44 Aligned_cols=357 Identities=12% Similarity=0.121 Sum_probs=171.8
Q ss_pred CchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhcCCHHHH---
Q 010807 93 KEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-----YIADTGIYSKLIAVMGKKGQTRLA--- 164 (500)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A--- 164 (500)
++...++.+.|.+. .+++....++-+.+.+++++|-+.+.....+.. -+.+-..|..+-+..+++-+.-.-
T Consensus 154 Pets~rvyrRYLk~-~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV-APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred hHHHHHHHHHHHhc-CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 33445555555554 344577788888888888888887777654431 133445566665555554433222
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcC--------
Q 010807 165 MWLFSEMRNSGCRPD--PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-------- 234 (500)
Q Consensus 165 ~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------- 234 (500)
..++..+... -+| ...|++|...|+ +.|.+++|.++|++.... .-++.-|+.+.++|+.-.
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYI----r~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~m 303 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYI----RSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKM 303 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHH
Confidence 2233333322 233 345666666666 666677777777665542 222223333333333211
Q ss_pred --------------CHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-
Q 010807 235 --------------NVDQVNALFKELHESIL-----------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP- 288 (500)
Q Consensus 235 --------------~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~- 288 (500)
+++-.+.-|+.+..... .-++..|..-+.. ..|+..+...++.+.... +.|
T Consensus 304 e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ 380 (835)
T KOG2047|consen 304 ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPK 380 (835)
T ss_pred hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcc
Confidence 12222233333322210 0122233222222 245556666666666543 111
Q ss_pred -----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--
Q 010807 289 -----DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-- 358 (500)
Q Consensus 289 -----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-- 358 (500)
-...|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|..+.+......-.|
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 123466677777777777777777777655432211 2334444444445566666666666554321110
Q ss_pred ---------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 359 ---------------SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 359 ---------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+...|+..++.-...|-++....+|+.+.+..+- ++.+.-.....+-.+.-++++.++|++-+.
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1223444455555566666666666666664432 233333333333344445555555554333
Q ss_pred CCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCC
Q 010807 424 MGVTPDS-STYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 424 ~~~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
.--.|+. ..|+..+.-+.+ .-+.+.|..+|++..+ |.+|.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 3222332 233433333322 1234555555555555 44433
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=5.3e-06 Score=79.32 Aligned_cols=295 Identities=9% Similarity=-0.043 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIAD-TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~ 200 (500)
++.+.+...+....+......+ ..........+...|++++|.+++++..+. .|+ ...+.. ...+...+...+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCc
Confidence 4455555555554443211222 222333445667889999999999998875 343 333332 22222222234455
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
..+.+.+.... ...+........+...+...|++++|.+.+++..+.... +...+..+...+...|++++|...+++
T Consensus 97 ~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 97 DHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred hhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666655522 222333445566778889999999999999999887543 567788888999999999999999999
Q ss_pred HHhCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHhHHHHH--H-HH
Q 010807 281 MKSNQC-KPDI--ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTF-N--SMIINYGKARLQGKAEYV--F-QK 350 (500)
Q Consensus 281 m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~-~~ 350 (500)
...... .++. ..|..+...+...|++++|+.++++...... .+..... + .++.-+...|..+.+..+ + ..
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~ 253 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADY 253 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 877532 2232 3455778889999999999999999864432 1222211 1 233333444543333333 2 11
Q ss_pred HHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 351 MTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD------M--KVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 351 m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
...... ............++...|+.+.|..+++.+...... . .+...-....++...|++++|.+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 254 AAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111100 111222235677788899999999999988763221 0 1222222334456889999999999887
Q ss_pred Hh
Q 010807 422 HN 423 (500)
Q Consensus 422 ~~ 423 (500)
..
T Consensus 334 l~ 335 (355)
T cd05804 334 RD 335 (355)
T ss_pred HH
Confidence 64
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=4.6e-05 Score=74.81 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=190.3
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~ 193 (500)
+.-.+...|+|..+-+.|+....- .......|+.+...|...|.-..|+.+++.-....-.|+..+ +-..-..|..
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e- 405 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE- 405 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh-
Confidence 444556779999999999987664 233567799999999999999999999988765432343333 3222233332
Q ss_pred cchHHHHHHHHHH--------------------------------------------------HHHhhcCCCCCCCHHHH
Q 010807 194 RDKAKALAKALGY--------------------------------------------------FQKMKGMERCKPNIVTY 223 (500)
Q Consensus 194 ~~~~~~~~~a~~~--------------------------------------------------~~~~~~~~~~~~~~~~~ 223 (500)
+.+.+++++++ +++..+.++..|++..|
T Consensus 406 --~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~ 483 (799)
T KOG4162|consen 406 --RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY 483 (799)
T ss_pred --chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33344444443 33333323223332222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCC---------------
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCK--------------- 287 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~--------------- 287 (500)
-++ -|+..++.+.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 484 lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 484 LAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence 222 23444555555555555555544445555555555555555555555555544322 110
Q ss_pred ---CCHHHHHHHHHHHhc-----------------------cCCHHHHHHHHHHH--------HhCC-----------CC
Q 010807 288 ---PDIITFNLLIDSYGK-----------------------RQAFDKMEQVFKSL--------MHSK-----------EK 322 (500)
Q Consensus 288 ---~~~~~~~~li~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~-----------~~ 322 (500)
--..|+..++..+-. .++..++.+....+ ...+ ..
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 001111111111110 00000011000000 0000 01
Q ss_pred CC------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 323 PT------LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 396 (500)
Q Consensus 323 ~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 396 (500)
|+ ...|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......++ -++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~ 719 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVP 719 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcH
Confidence 11 1123344455555666666665555555432 33455566666777778888888888888877653 2567
Q ss_pred HHHHHHHHHHhcCChhhHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 397 TLNAMLEAYCMNGLPTEADL--LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+..++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+...+.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 78888899999998777777 888888876 557888999999999999999999988877654
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-05 Score=71.95 Aligned_cols=305 Identities=11% Similarity=0.032 Sum_probs=215.2
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHHcCC
Q 010807 158 KGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYNILLRACAQARN 235 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~ 235 (500)
.++...|...+-.+... -++-++.....+...+. ..|+.++|+..|++.... .|+. .......-.+.+.|+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccC
Confidence 45555555555544432 35556777777888887 777899999999988743 3332 222333344567888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
.+....+...+.... .-+...|..-.......++++.|+.+-++....... +...|-.-...+...++.++|.-.|+.
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence 888888887776542 123444555555566778899999998888776433 455555555677888999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHHHHHHHCCCCC
Q 010807 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGY-CDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~~~~~~A~~~~~~~~~~~~~~ 393 (500)
..... +-+...|.-|+.+|...|.+.+|..+-+..... ++.+..+.+.+. ..|.- -..-++|..+++...+..+.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 87642 247899999999999999999998887766553 244566666553 33332 23457899999988875432
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 394 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
-....+.+...+...|....++.++++.... .||....+.|.+.+...+.+++|+..|..... +.|+..--..=++
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLR 512 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHH
Confidence 2556778888899999999999999998875 79999999999999999999999999987774 3455444333344
Q ss_pred HHhcC
Q 010807 474 TFSSS 478 (500)
Q Consensus 474 ~~~~~ 478 (500)
..-+.
T Consensus 513 ~lEK~ 517 (564)
T KOG1174|consen 513 LLEKS 517 (564)
T ss_pred HHHhc
Confidence 44433
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.8e-06 Score=73.78 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=179.6
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHL 191 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~ 191 (500)
..++..+.+..++.+|++++..-.++. +.+....+.+..+|....++..|-..|+++... .|...-|...- ..+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 345556666778888888887776653 346777888888999999999999999988764 45555444321 1222
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR--ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
+.+.+.+|+.+...|.. .++...-..-+. .....+++..+..++++....| +..+.+.......+.|
T Consensus 90 ----~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 90 ----KACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred ----HhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 66678888888888774 233222111122 2234677777777777765322 4445555555567788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------------CCHH----------
Q 010807 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-------------PTLP---------- 326 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------- 326 (500)
+++.|.+-|....+-+---....|+..+. ..+.++++.|++...++++.|++ ||+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 88888888888776533334556665553 44567888888888887776542 1111
Q ss_pred -----HHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 327 -----TFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 327 -----~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
.+|.-...+.+.++++.|.+-+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+...++ ....||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 12222233456677888887777765422 2445666655433322 3344444444444555444 34778888
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~ 420 (500)
++-.||+..-++-|..++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 88888888888888777765
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.6e-05 Score=69.54 Aligned_cols=354 Identities=15% Similarity=0.079 Sum_probs=190.5
Q ss_pred HHHHHHhcCCCchHHHHHHHhhhccCcch-HHHH--HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC
Q 010807 83 VRVLMRSFSDKEPLVRTLNKYVKVVRSEH-CFLL--FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG 159 (500)
Q Consensus 83 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~l--~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 159 (500)
++.++.. .|-.-...++..-...++.+. -..+ ....-+.|++++|+..|+.+.... .++...+-.+.-.+.-.|
T Consensus 29 Ledfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHH
Confidence 4444443 333344555554444444433 2222 233345699999999999988754 567777777777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010807 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 239 (500)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 239 (500)
.+.+|..+-... |+....+.|+-.+++ +.++-++-..+-+.+.. +..--.+|.......-.+.+|
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlah---klndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAH---KLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHH---HhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHH
Confidence 889888876654 455555555555554 44555555544444432 223344566666666789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhCCCCCCHH---------------------------
Q 010807 240 NALFKELHESILAPDIYTYNGVM-DAYGKNGMIKEMESVLSRMKSNQCKPDII--------------------------- 291 (500)
Q Consensus 240 ~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------------- 291 (500)
+.+|....... |+-...|.-+ -+|.+..-++-+.++++-....- +.++.
T Consensus 171 IdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 171 IDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 99999987653 2222333222 23444444444444444333220 00111
Q ss_pred ---------------------------------------HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 292 ---------------------------------------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 292 ---------------------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.--.|+-.|.+.+++.+|..+.+++. +.++.-|-.-.
T Consensus 248 N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 248 NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred cccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 11223334556666666666665541 11222121111
Q ss_pred HHHHhcCC-------HhHHHHHHHHHHhCCCCC-----------------------------------CHHHHHHHHHHH
Q 010807 333 INYGKARL-------QGKAEYVFQKMTAMKYTP-----------------------------------SFITYECIITMY 370 (500)
Q Consensus 333 ~~~~~~~~-------~~~a~~~~~~m~~~~~~~-----------------------------------~~~~~~~li~~~ 370 (500)
..+...|+ ..-|.+.|+..-+.+..- |...--.+..++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAK 403 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 11111111 222333333222221111 111113466777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTL-NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST-YKLLYKAYTKANMKEL 448 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~ 448 (500)
+..|.+.+|+++|-.+....++ |..+| ..|.++|.+++.++-|++++-++.. +.+..+ ...+.+-|.+.+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777665554 34444 4556788888888888877766543 223333 3334557888888888
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 010807 449 VQKLLKRMEQNGIVPNKRF 467 (500)
Q Consensus 449 a~~~~~~m~~~g~~p~~~~ 467 (500)
|-+.|+.+.... |+++.
T Consensus 480 aaKAFd~lE~lD--P~pEn 496 (557)
T KOG3785|consen 480 AAKAFDELEILD--PTPEN 496 (557)
T ss_pred HHHhhhHHHccC--CCccc
Confidence 888887776543 44433
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.1e-07 Score=84.56 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|.+..++.-.+ ... ..-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 14 ~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp TT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 455666665444 221 111122334455666777777766443 3333322 5565555555554444445555555
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 277 VLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 277 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
-+++....... .+.........++...|++++|++++... .+.......+..|.+.++++.|...++.|.+..
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55444333322 22233333335566778888887776532 356666677778888888888888888887642
Q ss_pred CCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 356 YTPSFITYECIITMYG----YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
.| .+...+..++. ..+.+.+|..+|+++... ..+++.+.|.+..++...|++++|.+++.+....+ +-|..
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHH
Confidence 33 33333444332 234578888888887654 45677788888888888888888888888877654 33566
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 010807 432 TYKLLYKAYTKANMK-ELVQKLLKRMEQN 459 (500)
Q Consensus 432 ~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 459 (500)
+...++-.....|+. +.+.+++.++.+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777776 5666777776643
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.9e-05 Score=74.41 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=154.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN-------S 330 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 330 (500)
...+.++..+..+++.+++-+....+.. -+..-++....+|...|.+..++..-+...+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3556667777788888888888877765 36666777778888888888887777666555432 222222 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHhccCCHHHHHHHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-------------------------ECIITMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~A~~~~~~ 385 (500)
+..+|.+.++++.+...|.+.......|+...- -.=...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 444667778888999988887765444443221 1225566788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 386 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
+++.. +-|...|..-.-+|.+.|.+..|+.-.+..++.. ++....|.-=..++....+++.|.+.|++..+.. |+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh
Confidence 99987 4588999999999999999999998888777653 2333444444556666778999999998888665 787
Q ss_pred HHHHHHHHHHhcCC
Q 010807 466 RFFLEALETFSSSL 479 (500)
Q Consensus 466 ~~~~~ll~~~~~~g 479 (500)
.-+..-+..|....
T Consensus 460 ~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHh
Confidence 77877787777754
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=2.7e-05 Score=84.34 Aligned_cols=333 Identities=9% Similarity=0.008 Sum_probs=206.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCHHHHHHHH--HHHHcC
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC------RPDPSVYNALI--TAHLHT 193 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~li--~~~~~~ 193 (500)
.|++..+...++.+.... ...+..........+...|++++|..++......-- .+....-...+ ..+.
T Consensus 387 ~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~-- 463 (903)
T PRK04841 387 QGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI-- 463 (903)
T ss_pred cCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH--
Confidence 456665555555442111 011222234455566788999999999988754310 11111111111 2222
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESIL-----APDIYTYNGVMDA 264 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~ 264 (500)
..|++++|...+++...... ..+ ....+.+...+...|++++|...+++.....- .....++..+...
T Consensus 464 --~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 464 --NDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred --hCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56778999999988764211 112 23456677778889999999999988764311 1112345566677
Q ss_pred HhhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHH
Q 010807 265 YGKNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKP--TLPTFNSMII 333 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~ 333 (500)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876542 221 1 22334555666777899999999998775431 112 2344555667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC--CCCCHH--H--HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 010807 334 NYGKARLQGKAEYVFQKMTAMK--YTPSFI--T--YECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEA 404 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~--~~~~~~--~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 404 (500)
.+...|++++|...+....... ...... . ....+..+...|+.+.|..++........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999988875421 111111 1 01122445568999999999877654221111 1124567778
Q ss_pred HHhcCChhhHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 405 YCMNGLPTEADLLFENSHNM----GVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999987653 32222 3456667778899999999999999998753
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.5e-05 Score=70.85 Aligned_cols=374 Identities=15% Similarity=0.158 Sum_probs=221.1
Q ss_pred CCCCccchhHHHHHHHHHHhcCCCchHHH-HHHHhhhccCcchHHHHHHHHc-----------------ccCCHHHHHHH
Q 010807 70 RGRKSEELESKELVRVLMRSFSDKEPLVR-TLNKYVKVVRSEHCFLLFEELG-----------------KSDKWLQCLEV 131 (500)
Q Consensus 70 ~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~l~-----------------~~~~~~~A~~~ 131 (500)
....+...+|......|++..++.....+ -+-...+....+++..+++... +.+..++|+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 45566778888888888887766544322 1323334444555554443322 23556667666
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 010807 132 FRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP---------------------------DPSVYN 184 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~~~~ 184 (500)
++... +.|..+...-...+.+.|++++|.++|+.+.+.+..- ...+|.
T Consensus 102 ~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 102 LKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYE 176 (652)
T ss_pred Hhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHH
Confidence 66222 2345677777888999999999999999986654211 011333
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHh--------hcCCCCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKM--------KGMERCKPNIV-----TYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
.+....|..- ..|++.+|+++++.. ...+...-+.. +---|.-++...|+.++|..+|...++...
T Consensus 177 l~yN~Ac~~i-~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 177 LLYNTACILI-ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 3332222111 678999999999998 22111101111 122345567789999999999999988754
Q ss_pred CCCHHH----HHHHHHHHhhcCCH----------------HHHHHHHHH-------------------------H-HhC-
Q 010807 252 APDIYT----YNGVMDAYGKNGMI----------------KEMESVLSR-------------------------M-KSN- 284 (500)
Q Consensus 252 ~p~~~~----~~~ll~~~~~~g~~----------------~~a~~~~~~-------------------------m-~~~- 284 (500)
. |... -|.|+..-....-+ +.++..|.. . ...
T Consensus 256 ~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 256 A-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred C-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 3 3322 22232211110000 001110000 0 000
Q ss_pred CCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHhC
Q 010807 285 QCKPDIITFNLLIDSYGK--RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ--------KMTAM 354 (500)
Q Consensus 285 ~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~ 354 (500)
+..|.. .+.+++..+.+ ...+..+.+++...-+....-...+--.++......|+++.|..++. .+.+.
T Consensus 335 ~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 112222 23333333222 22467777777777665444345666777888889999999999999 55554
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
+..| .+...++..+.+.++-+.|..++...... .-.+.. .++.-+...-.+.|+-++|..+++++.+.. ++
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-Cc
Confidence 4444 45677888888888888888888776641 011122 233334444457899999999999999864 78
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
|..+...++.+|++. +.+.|..+-++
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999876 45666665443
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=6.7e-06 Score=71.47 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=202.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
-+++++..+.+..++++|++++..-.++ .| +..-...+-.+|. ...++..|-+.|+++... .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql---~P~~~qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL---HPELEQYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh---ChHHHHHHH
Confidence 3677788888999999999999988876 34 5556666666777 778899999999999863 566555543
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 226 -LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD--AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 226 -ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
-...+.+.+.+..|+++...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 345667889999999999988764 22222122222 2345678888888888776433 44455555555678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CHH--------
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-------------SFI-------- 361 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~~-------- 361 (500)
.|+++.|.+-|+...+-+---....|+..+. ..+.++++.|.+...++.++|++- |+.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999887655546677877664 446789999999999998887532 211
Q ss_pred HHHHHH-------HHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 362 TYECII-------TMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 362 ~~~~li-------~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
.-+.++ ..+.+.++++.|.+.+-.|..+ ....|+.|...+.-.= -.+++.+..+-+.-+.... +-...||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence 112333 3346778999999888887642 2234666665543222 2345555555555555543 2356899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 434 KLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
..++-.|+++.-++.|-.++.+-.
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCc
Confidence 999999999999999988876543
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.00016 Score=68.25 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
.+....++++++..-..--..+|...++.-.+..-...|..+|.+..+.+..+ +..++++++..|| .+|.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222233456677777777777888888888888877666 6677788887777 578888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
--.+. +.-++.--...+.-+...++-..|..+|++....++.|| ...|..+|.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 54442 223455556777778888888888888888888766655 367888888888888888888887777643
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=0.00013 Score=70.38 Aligned_cols=323 Identities=10% Similarity=0.086 Sum_probs=209.3
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
.-|+-++|.+..+.-.+.+ .-+.+.|+.+.-.+....++++|++.|......+ +.|...|.-+--.-+ +.+++
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~----QmRd~ 125 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQI----QMRDY 125 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH----HHHhh
Confidence 3477788888877776643 4467889999999999999999999999998863 234555555444334 66777
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHhhcCCHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMD------AYGKNGMIKE 273 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~g~~~~ 273 (500)
+.....-.+..+.. +.....|..+..++--.|+...|..++++..+.. -.|+...|..... ...+.|..++
T Consensus 126 ~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 77777777666532 4456678888999999999999999999988765 3466666554433 3556788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CCHhHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-FNSMIINYGKA-RLQGKAEYVFQKM 351 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~-~~~~~a~~~~~~m 351 (500)
|++.+..-... +......-..-...+.+.+++++|..++..++.. .||..- |..+..++.+- +..+....+|...
T Consensus 204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88887765543 2212223345566788899999999999999885 345444 44444555422 2222222444433
Q ss_pred H----------------------------------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC---
Q 010807 352 T----------------------------------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK----LG--- 390 (500)
Q Consensus 352 ~----------------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~--- 390 (500)
. +.|+++ ++..+...|-.-...+-..++.-.+.. .|
T Consensus 281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 2 333222 122222222221111111111111111 11
Q ss_pred -------CCCCHHHHH--HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 391 -------KDMKVSTLN--AMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 391 -------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
-+|+...|. .++..|-+.|+++.|..+++..+++ .|+.. .|-.=.+.+.+.|+.++|..++++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 145555554 4567788899999999999999887 66644 44455678999999999999999888653
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.1e-06 Score=85.31 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+|--..-..+...+.+.|-...|..+|+.+. .|..++.+|+..|+..+|..+..+-.++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444444567778888999999999998753 5677888999999999999998888874 7899999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
.+......-+++|.++++..... .-..+.....+.++++++...|+.-.+.. +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99988888899999998875332 22222223344788999999998877754 44577888888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+.|.+.|.......+ -+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|.+.+....+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999998887542 357789999999999999999999999999877 446667788888888999999999999988
Q ss_pred HHCC-CCCCHHHHHHHHHHH
Q 010807 457 EQNG-IVPNKRFFLEALETF 475 (500)
Q Consensus 457 ~~~g-~~p~~~~~~~ll~~~ 475 (500)
.+.. ..-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7641 112444444444433
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=0.00023 Score=68.73 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
+...++-+.++++...-...|+.....-.+.....+|...+......|-.+.+..+|++.++. .| ..-+..|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHH
Confidence 334455566667777777777766554323334456777777777788888888888877753 23 23455555555
Q ss_pred cCcchHHHHHHHHHHHHHhhc
Q 010807 192 HTRDKAKALAKALGYFQKMKG 212 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~ 212 (500)
..+++++|-+.+.....
T Consensus 181 ----~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 181 ----KSDRLDEAAQRLATVLN 197 (835)
T ss_pred ----hccchHHHHHHHHHhcC
Confidence 55566666666666543
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=4.2e-07 Score=82.62 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=71.6
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010807 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----AR 339 (500)
Q Consensus 264 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 339 (500)
.+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554431 134444455555555556666655555555431 12 222223332222 23
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHH
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLF 418 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~ 418 (500)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+. -++.+...++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455666666665443 345555556666666666666666666665554432 2444555555555555555 4455555
Q ss_pred HHHHh
Q 010807 419 ENSHN 423 (500)
Q Consensus 419 ~~m~~ 423 (500)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55554
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.1e-05 Score=83.89 Aligned_cols=229 Identities=8% Similarity=0.057 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
+-....|-..|......++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|+++.+. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 344667888888888888888998888887654 211 1245666666666667778888888888765 21345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMY 370 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~ 370 (500)
.|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+.++.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 6778888888888889999999888876 3346778888888888888888888888887764211 1234455566666
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS--STYKLLYKAYTKANMKEL 448 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 448 (500)
.+.|+.+++..+|+......++ -...|+.+|..=.++|+.+.+..+|++.+..++.|-. ..|...+..=-+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7788888888888888776433 4778888888888888888888999888888776643 244445544445565444
Q ss_pred HH
Q 010807 449 VQ 450 (500)
Q Consensus 449 a~ 450 (500)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 33
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4e-06 Score=79.44 Aligned_cols=219 Identities=11% Similarity=0.043 Sum_probs=107.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (500)
.+.|++.+|.-.|+...+..+. +...|.-|....+..++-..|+..+.+..+.... |....-+|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555555555433 4555555555555555555555555555554333 4445555555555555555555
Q ss_pred HHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 311 QVFKSLMHSKEKP--------TLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 311 ~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
+.++..+...++- +...-.. ..+.......+..++|-++ ...+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 5555543322100 0000000 0111111222233333222 233333555555555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.|+.++...+ -|..+||.|...++...+..+|+..|.+.++. .|+ +.....|..+|...|.+++|.+.|-..
T Consensus 452 cf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 6665555432 24556666666666666666666666665553 343 234444555566666666665555443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.7e-06 Score=79.69 Aligned_cols=251 Identities=13% Similarity=0.095 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++.+|.-.|+...... +-+...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-.+|+
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 5666788888887776533 556778888888888888888888888887776544 6677777777788888778888
Q ss_pred HHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 276 SVLSRMKSNQCK--------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 276 ~~~~~m~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
..|+.-.....+ ++...-.. ..+.....+....++|-++.. .+..+|...+..|...|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543211 00000000 122333445555666655543 3434677778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh---
Q 010807 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN--- 423 (500)
Q Consensus 347 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 423 (500)
.|+..+... +-|..+||-|...++...+.++|+..|.+.++..+.. +.+.-.|.-.|+..|.+++|...|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 888888754 3457788888888888888888888888888754332 34555567788888888888887766542
Q ss_pred C------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 424 M------GVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 424 ~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
. +-.++...|..|=.++.-.++.+.+.+..
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 1 11234566777766777777766554443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.6e-05 Score=72.02 Aligned_cols=221 Identities=6% Similarity=-0.090 Sum_probs=141.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--HH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA--FD 307 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~ 307 (500)
...++.++|+.++.++++.... +..+|+..-.++...| ++++++..++++.+...+ +..+|+.-...+.+.|+ .+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 3456677777777777765333 3445555555555556 567888888877776544 44455544444444454 25
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CC----HHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DN----VSRAR 380 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~----~~~A~ 380 (500)
+++.+++++++...+ +..+|+...-++...|+++++++.+.++++.+ .-|...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 677777777766443 67778777777777888888888888887765 33555665555544443 22 24566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------------
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------------ 444 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------------ 444 (500)
+...+++...+ -|...|+.+...+... ++..+|.+.+.+....+ ..+......|+..|+...
T Consensus 204 ~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 66667776543 3677888888777763 34466888887776654 335667777888776532
Q ss_pred ------CHHHHHHHHHHHH
Q 010807 445 ------MKELVQKLLKRME 457 (500)
Q Consensus 445 ------~~~~a~~~~~~m~ 457 (500)
..++|.++++.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 2366777777773
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=7.9e-05 Score=75.21 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=141.1
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHH---------------------------
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-YIADTGIYSKLIAVMG--------------------------- 156 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~--------------------------- 156 (500)
+..+++..-..++.+...+-..+-+++++++.-... +..+...-|.+|-...
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 334555555566666666666666777766643321 2222333333333333
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 157 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236 (500)
Q Consensus 157 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 236 (500)
..+-+++|..+|.+. ..+....+.||. .-+.++.|.++-++.. ....|..+..+-.+.|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie-------~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE-------NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH-------HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCch
Confidence 333334444444433 223333333333 3344555555544443 345788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+|++-|-.. -|...|..+++...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+.++++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 8888777443 267788888888999999999888888887776665543 57788888888888776665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
..|+......+.+-|...+.++.|.-+|.... .|..|...+...|++..|..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHH
Confidence 45677667777777777777777776665432 24444444455555554443
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=6.7e-05 Score=66.75 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=105.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA-LITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~ 193 (500)
+=..+--.|++.+|+.-|....+.+ +.+-.++..-...|.-.|+...|+.-++..++. +||-..-.. --..+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll-- 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL-- 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh--
Confidence 3344555688888888888887753 334445555566788888888888888888774 676432211 011222
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHH----HH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIV----TY------------NILLRACAQARNVDQVNALFKELHESILAPDIYT 257 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 257 (500)
+.|.++.|..-|+.+... .|+.. .+ ...+..+...|+...|+.....+++..+ -|...
T Consensus 118 --K~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 118 --KQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred --hcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 778888888888888753 23211 11 1122333344555555555555554322 24455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
|..-..+|...|++..|+.-++...+..-. ++.++--+-..+...|+.+.++..+++.++
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 555555555555555555555444433222 333333344444555555555555555544
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.2e-05 Score=83.59 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=191.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCK---PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (500)
....|-..|......++.++|.++.++.... ++. --...|.++++.-..-|.-+...++|++..+. -.....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4567888888999999999999999998754 111 12345667776666667888999999999774 22456788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMN 408 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 408 (500)
.|...|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-++ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999998852 356788999999999999999999999988874322 1344555566666789
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCCCCCcc
Q 010807 409 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK--RFFLEALETFSSSLAGSQSGS 486 (500)
Q Consensus 409 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~ 486 (500)
|+.+.+..+|+...... +--...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|.-.|+.=-..|+.+.-..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999988763 335678999999999999999999999999999998875 456666666666788888888
Q ss_pred chhhhhhhhhhc
Q 010807 487 AKTDLTRSLSTA 498 (500)
Q Consensus 487 ~~~~l~~~~~~~ 498 (500)
+++...++.+.-
T Consensus 1693 VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1693 VKARAKEYVESI 1704 (1710)
T ss_pred HHHHHHHHHHHh
Confidence 887777776543
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.2e-08 Score=57.36 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
+.||..+||.||.+||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.4e-08 Score=57.24 Aligned_cols=32 Identities=41% Similarity=0.796 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 215 RCKPNIVTYNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
No 102
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=6.6e-05 Score=69.34 Aligned_cols=132 Identities=7% Similarity=0.021 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
.++.++|+.+++.+.+.. +-+..+|+....++...| ++++++..++++.+... .+..+|+..-..+.+.+ ....
T Consensus 50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~--~~~~ 124 (320)
T PLN02789 50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG--PDAA 124 (320)
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC--chhh
Confidence 345556666665555542 333344554444455544 34555555555554321 12223333222222110 0112
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 261 (500)
++++.+++++.+.. +.|..+|+....++...|+++++++.++++++.++. |...|+..
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 34444444444322 334445555555555555555555555555544433 33344333
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00021 Score=77.56 Aligned_cols=325 Identities=7% Similarity=-0.010 Sum_probs=193.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCC-C----CCC--HHHHHH
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-C----KPN--IVTYNI 225 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~ 225 (500)
..+...|+++.+..+++.+.......+..........+. ..|+++++..++........ . .+. ......
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~----~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 457 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ----SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNAL 457 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH----HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 345566778777777766532211112222222222333 45667888888776643110 0 111 122233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHH
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIITFNLL 296 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l 296 (500)
+...+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 445567899999999999988763222222 23455666778899999999999887643 111 112345566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCC--CHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHS----KEK--P-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTP--SFITYEC 365 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ 365 (500)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77788899999999998876542 211 1 22345556666777899999999988875531 112 2344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHH----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHH
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLG--KDMKVST----LNAMLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLL 436 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 436 (500)
+...+...|+.+.|.+.++...... ....... ....+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888999999999998875421 1111111 01122445568999999999877654321111 1123456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhcCCCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQN----GIVPNK-RFFLEALETFSSSLAG 481 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~ 481 (500)
..++...|+.++|..++++.... |..++. .+...+-.++...|+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 77888999999999999988754 433322 2333344444455543
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00046 Score=65.37 Aligned_cols=378 Identities=10% Similarity=0.069 Sum_probs=227.2
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 184 (500)
...+.+....+++.+..+ ..+++.+.++.+... ++.....|..-|..-...++++..+.+|.+.+.. ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 445677788899999877 899999999999886 5667788999999999999999999999998875 34567777
Q ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCC
Q 010807 185 ALITAHLHT-RDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRA---------CAQARNVDQVNALFKELHESILAP 253 (500)
Q Consensus 185 ~li~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~~~g~~p 253 (500)
..+...-+. +...|.-+.-.+.|+-....-|..+ ....|+..+.. +..+.+++...++|+++....+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777644321 1122222333344444433233222 33356655543 334446677888898887643221
Q ss_pred ------CHHHHHHHHHHH-------hhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHH----
Q 010807 254 ------DIYTYNGVMDAY-------GKNGMIKEMESVLSRMKS--NQCKPDII---------------TFNLLIDS---- 299 (500)
Q Consensus 254 ------~~~~~~~ll~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~~---------------~~~~li~~---- 299 (500)
|-..|..-|+.. -+...+..|.++++++.. +|+..+.. .|..+|..
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111222212111 112234455555555432 12111111 12111111
Q ss_pred ---------------------------------------------HhccCC-------HHHHHHHHHHHHhCCCCCCHHH
Q 010807 300 ---------------------------------------------YGKRQA-------FDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 300 ---------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
+...|+ -+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 2333444443332211222223
Q ss_pred HHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010807 328 FNSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLE 403 (500)
Q Consensus 328 ~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 403 (500)
|..+...--..- ..+.....++++...-..--..+|..+++.-.+...+..|..+|.++.+.+..+ ++.++++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 322222111111 244455556655553222224567888888889999999999999999977666 7889999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCC
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK--RFFLEALETFSSSLA 480 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~ 480 (500)
-||. ++..-|.++|+--... -+|.. --...+.-+.+.++-..+..+|++....++.|+. ..|..+|.-=..-|+
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 8886 6788999999875543 23433 3455677788889999999999999998777775 678888877666676
Q ss_pred CCCCccchhh
Q 010807 481 GSQSGSAKTD 490 (500)
Q Consensus 481 ~~~~~~~~~~ 490 (500)
......+..+
T Consensus 488 L~si~~lekR 497 (656)
T KOG1914|consen 488 LNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHH
Confidence 6554444333
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=9.3e-05 Score=73.15 Aligned_cols=294 Identities=13% Similarity=0.096 Sum_probs=166.8
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GC--------RPDPSVYNALITAH 190 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~~~~~li~~~ 190 (500)
...|+.+.|.+-.+.+. +..+|..|..+|.+..+.+-|.-.+..|... |. .|+...-...+-+
T Consensus 739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA- 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA- 810 (1416)
T ss_pred EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH-
Confidence 33477777776665554 3567999999999999999888887777542 21 2322211111111
Q ss_pred HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010807 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 270 (500)
. ..|.+++|+.+|.+-+. |..|=..|...|.+++|.++-+.=.+..+ ..||......+-..++
T Consensus 811 i----eLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 I----ELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD 873 (1416)
T ss_pred H----HHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc
Confidence 2 78999999999999874 44566677889999999998765332222 2456666666666778
Q ss_pred HHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 271 IKEMESVLSRMK----------SNQ---------CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 271 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
.+.|++.|++.. ... -..|...|.-........|+.+.|+.+|....+ |-.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 888888876532 111 112444555555555667888888888876533 2233
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----------CCCCCCHHH----
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK----------LGKDMKVST---- 397 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~---- 397 (500)
+...|-.|+.++|.++-++ .-|......|.+.|.+.|++.+|..+|.+... +++ +...
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nla 1016 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLA 1016 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 3333344444444443322 11333333444444444444444444443321 111 0111
Q ss_pred ---------------------HHHHHHHHHhcCChhhHHHHHHH--------HHhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010807 398 ---------------------LNAMLEAYCMNGLPTEADLLFEN--------SHNMGV--TPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 398 ---------------------~~~li~~~~~~g~~~~A~~~~~~--------m~~~~~--~p~~~~~~~li~~~~~~g~~ 446 (500)
+..-+..|-+.|.+.+|+++--+ ++..++ ..|+...+.-...|....++
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 12234456667777777665321 222222 33566666666666777777
Q ss_pred HHHHHHHHH
Q 010807 447 ELVQKLLKR 455 (500)
Q Consensus 447 ~~a~~~~~~ 455 (500)
++|..++..
T Consensus 1097 ekAV~lL~~ 1105 (1416)
T KOG3617|consen 1097 EKAVNLLCL 1105 (1416)
T ss_pred HHHHHHHHH
Confidence 776666543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=3e-05 Score=75.71 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|-...|+.+|++.. .|.-.|..|+..|+.++|..+..+..+ -+||...|..+.+......-+++|.
T Consensus 410 slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 410 SLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHH
Confidence 6677888888888765 355677788888888888888877766 3567788888888777777778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++.+..... .-..+.....+.+++.++.+.|+.-.+... ....+|-.+..+..+.++++.|...|.....-
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL- 548 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL- 548 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-
Confidence 887765432 111222223346888888888887666432 35677877888888888888888888777663
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 356 YTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 356 ~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.|| ...||.+-.+|.+.++-.+|...+.+..+.+. -+..+|...+....+.|.+++|++.+.++..
T Consensus 549 -~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 -EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 444 66788888888888888888888888888763 3567777788888888888888888887654
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.9e-05 Score=70.51 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTF 328 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 328 (500)
.....+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|+..++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777777888888888888888888765322 1 1235666777888888888888888888775433222 245
Q ss_pred HHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 329 NSMIINYGKA--------RLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 329 ~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
..+..++... |++++|...++.+.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 5555555544 56777777777777643 332 22221111100 000 00 01112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+...|.+.|++.+|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999887621 223568889999999999999999998888754
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=4.8e-05 Score=78.35 Aligned_cols=270 Identities=14% Similarity=0.085 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 222 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (500)
.+...+..|+..+...+++++|.++.+...+. .|+...+-.+...+.. ..+...++.-+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~---q~~~~~~~~lv---------------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSL---SRRPLNDSNLL---------------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHH---hhcchhhhhhh----------------
Confidence 35677888888888889999998888876664 4544333322222211 22222222211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
.++.......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.... |..+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Confidence 44455555556655555555555532 24457778888888888888888888888887744 77888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
. ++++|++++.+.... +...+++..+.++|..+.... +-+...+-.+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i---------------- 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI---------------- 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH----------------
Confidence 8 888888888776542 556667778888888877753 1122222222
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 010807 383 FDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NG 460 (500)
Q Consensus 383 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g 460 (500)
.+.+... +..--..++-.+-..|-..+++++++.+++.+.+.. +-|.....-++..|. +.+.. ...|++..+ .|
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 2222211 112234555556667777777888888888877765 335666666766665 22222 233333332 25
Q ss_pred CCCCHHHHHHHHHHH
Q 010807 461 IVPNKRFFLEALETF 475 (500)
Q Consensus 461 ~~p~~~~~~~ll~~~ 475 (500)
+.-+...+...|.-|
T Consensus 286 l~~~~~~~~~~i~~f 300 (906)
T PRK14720 286 IGNNRKPVKDCIADF 300 (906)
T ss_pred cccCCccHHHHHHHH
Confidence 555544444444443
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.0001 Score=74.44 Aligned_cols=298 Identities=12% Similarity=0.152 Sum_probs=181.5
Q ss_pred cchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
.-++-.+.+.....+-+++|..+|++.. .+....+.+|. .-++.+.|.+.-++.- ....|..+..
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlak 1112 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAK 1112 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHH
Confidence 3344444444555567788888887743 34555555555 3466777777666543 4467888888
Q ss_pred HHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010807 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (500)
+-. +.|.+.+|++-|-+.. |+..|..+++...+.|.+++-.+.+.-.++..-+|... +.||-+|++.
T Consensus 1113 AQL----~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1113 AQL----QGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HHH----hcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 877 7778888888876643 66788999999999999999999988877777666655 4688889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010807 269 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 348 (500)
Q Consensus 269 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (500)
+++.+.++++. .||......+.+-|...+.++.|.-+|..+ .-|..|...+...|+++.|.+.-
T Consensus 1180 ~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 88877665542 467777777777777788888777666532 34555555566666666555443
Q ss_pred HHHH------------------------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 349 QKMT------------------------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 349 ~~m~------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
++.. ...+.....-...++..|...|-+++-+.+++...... ......|+-|.-.
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 3221 11111222333445555555555555555555433211 1123445555555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|.+- ++++..+-++-.-. ....-.+++++.+..-|.+..-++.+-.+
T Consensus 1323 Ysky-kp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHhc-CHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5443 22333222222211 12234577888888888777776665443
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=0.0013 Score=65.16 Aligned_cols=225 Identities=11% Similarity=0.068 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC------------------CCHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILA------------------PDIY 256 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~------------------p~~~ 256 (500)
..++++.|.+...+..+. +-..+...|..+.-.+...+++.+|+.+.+..... |.. --..
T Consensus 490 ~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 778899999999998874 23667889999999999999999999999886543 210 0122
Q ss_pred HHHHHHHHHhhc-----------------------CCHHHHHHHHHHH--------HhCC-----------CCCC-----
Q 010807 257 TYNGVMDAYGKN-----------------------GMIKEMESVLSRM--------KSNQ-----------CKPD----- 289 (500)
Q Consensus 257 ~~~~ll~~~~~~-----------------------g~~~~a~~~~~~m--------~~~~-----------~~~~----- 289 (500)
|...++..+-.. ++..++.+....+ ...| ..|+
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 333333333210 0111111111110 0001 0111
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 290 -IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 290 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
...|......+.+.+..++|...+.+.... .......|......+...|.+++|.+.|....... +-++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 123345556677788888888777777654 34467788888888999999999999999888754 334778899999
Q ss_pred HHhccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 369 MYGYCDNVSRARE--IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 369 ~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
++.+.|+..-|.. ++.++.+.++ -+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999998877777 9999999874 47999999999999999999999999987654
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=2.8e-05 Score=69.47 Aligned_cols=189 Identities=13% Similarity=-0.011 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILA-P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--IT 292 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 292 (500)
......+..+...+...|+++.|...|+++...... | ...++..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456778888999999999999999999999875432 1 1246778889999999999999999999876433111 24
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 010807 293 FNLLIDSYGKR--------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 293 ~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
+..+..++.+. |++++|.+.|+.+....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 55555566554 7899999999999876433 3333322221111 000 000 1122
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466678899999999999999887532 224678889999999999999999999887764
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=3.4e-05 Score=66.28 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY-GYCDN--VSRA 379 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~A 379 (500)
.++.++++..++..++..+ .+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455555555555555432 255566666666666666666666666665543 23455555555542 44444 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665432 4556666666666666666666666666554
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=9.4e-05 Score=72.21 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
+.+......|.+|+.+++.+.++.. -...|..+...|+..|+++.|.++|.+.- .++..|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666666666666655422 12234555566666666666666665431 244556666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 385 (500)
..|.++-.+.. |.......|-.-..-+-..|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++.++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 66666655442 233334444444444555566666655553322 2322 34455555555555544443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.00029 Score=69.84 Aligned_cols=302 Identities=13% Similarity=0.122 Sum_probs=167.9
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 202 (500)
|-.++|+.+|+...+ |..|=..|-..|.+++|.++-+.=....++ .||......+- ..++++.
T Consensus 814 gMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Le----ar~Di~~ 876 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLE----ARRDIEA 876 (1416)
T ss_pred hhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHH----hhccHHH
Confidence 566777777777655 444556677788888888876553322222 22322222222 5566888
Q ss_pred HHHHHHHhhcC----------C--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 203 ALGYFQKMKGM----------E--------RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 203 a~~~~~~~~~~----------~--------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
|+++|++.... . .-..|...|.-.....-..|+.+.|+.+|....+ |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88888764310 0 0022334444445555556777777777765542 4556666
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK- 343 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 343 (500)
.|-.|+.++|-++-++-. |...+-.|...|...|++.+|+.+|.+.. +|...|+.|-.++.-++
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 777888888887766532 56666778888999999999998887653 33334443333322221
Q ss_pred --------------HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------HHH--CCCCCCHHHHH
Q 010807 344 --------------AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE--------LSK--LGKDMKVSTLN 399 (500)
Q Consensus 344 --------------a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--------~~~--~~~~~~~~~~~ 399 (500)
|..+|++ .|.. +..-+..|-+.|.+.+|+++--+ ++. .....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 2222221 1111 12234456667777777654221 111 22334666666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh--------------------------CCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHN--------------------------MGVTPDS----STYKLLYKAYTKANMKELV 449 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~--------------------------~~~~p~~----~~~~~li~~~~~~g~~~~a 449 (500)
.-...++...++++|..++-..++ .+-.|+. .....+...|.++|.+..|
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 666667777777777666533221 1112332 3455666778888888877
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 450 QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 450 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
-+-|-..-++ ...++++.++|+.+
T Consensus 1165 tKKfTQAGdK---------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1165 TKKFTQAGDK---------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHhhhhhH---------HHHHHHHHhcCCcc
Confidence 7655433211 33455555666543
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=4e-05 Score=65.84 Aligned_cols=149 Identities=8% Similarity=0.093 Sum_probs=117.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678888888875554333221 0 01223566778888888877765 66789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAY-CMNGL--PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999764 3788888888874 67777 599999999999885 447788999999999999999999999
Q ss_pred HHHHHCC
Q 010807 454 KRMEQNG 460 (500)
Q Consensus 454 ~~m~~~g 460 (500)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998763
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=8.9e-05 Score=63.78 Aligned_cols=158 Identities=8% Similarity=-0.032 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 338 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (500)
..+-..+...|+-+....+........ .-|.......+....+.|++..|+..|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444455555666666655555543321 224444555666666666666666666666554 234666666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
|+.+.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666666532 22344556666666666666666666666665432 24555566666666666666666655
Q ss_pred HH
Q 010807 419 EN 420 (500)
Q Consensus 419 ~~ 420 (500)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 117
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.00012 Score=71.47 Aligned_cols=284 Identities=15% Similarity=0.127 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010807 150 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229 (500)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (500)
+.|..|.+.|..-+|.+.-..-.. +..|......+..+++ +..-+++|-++|+++.. |+ ..+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali----k~elydkagdlfeki~d-----~d-----kale~ 683 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI----KGELYDKAGDLFEKIHD-----FD-----KALEC 683 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH----hhHHHHhhhhHHHHhhC-----HH-----HHHHH
Confidence 456667777777666554332211 2356666666666666 55567777777777653 11 12222
Q ss_pred HHHcCCHHHHHHHHHHHH----------------hCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 230 CAQARNVDQVNALFKELH----------------ESILAPD--------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~----------------~~g~~p~--------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
|-+..-+.+|+++-+-.- ..| ..| .......+.+.....+|.+|+.+++.+....
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk 762 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK 762 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc
Confidence 222222333333221110 000 000 0011122334445566677777777666542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
. -...|..+.+-|...|+++.|+++|.+. ..++-.|..|.+.|+|+.|..+-.+. .|.......|-.
T Consensus 763 ~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yia 829 (1636)
T KOG3616|consen 763 T--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIA 829 (1636)
T ss_pred c--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHH
Confidence 2 2334566667777777777777777543 12445566777777777777665443 233334445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
-..-.-+.|++.+|.++|-.+.. |+ .-|..|-+.|..+..+++.++-... .-..|...+..-+-..|+
T Consensus 830 kaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccC
Confidence 55556666777777766543322 22 2356677777777777776653221 123466677778888999
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 010807 446 KELVQKLLKRMEQN----GIVPNKRFFLEALETF 475 (500)
Q Consensus 446 ~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~ 475 (500)
...|.+.|-+..+. ++.-+...|....+..
T Consensus 898 lkaae~~flea~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Confidence 99999888666532 3334444454444443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0006 Score=58.82 Aligned_cols=243 Identities=16% Similarity=0.081 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH-
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME- 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~- 275 (500)
.|.+..++..-...... +.+...---+-++|...|.+.....-. .. |-.|....+..+-.....-++.++-+
T Consensus 21 ~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 35555555544443321 122233333444555555543332221 11 11233333333333333334333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++.+.+.......+......-...|++.|++++|++..... . +......=+..+.+..+.+-|...++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33334443333333333334445677777777777766552 1 2222222334455666677777777777763
Q ss_pred CCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 356 YTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
-+..|.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.|....++...|++++|..++++..... ..++.
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 355566655555543 34577777777777764 35677777777777777778888887777777665 34566
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKEL-VQKLLKRME 457 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~-a~~~~~~m~ 457 (500)
+...++-.-...|.-.+ ..+.+....
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 66666665555665433 333444444
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=7.9e-05 Score=64.10 Aligned_cols=157 Identities=13% Similarity=0.028 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555556666666655554433 22345555556666667777777777777766543 56677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|+++.|..-|.+..+... -++..+|.|...|.-.|+.+.|..++......+ .-|...-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777776666432 245666666666667777777777777666553 225556666666666777777776665
Q ss_pred H
Q 010807 454 K 454 (500)
Q Consensus 454 ~ 454 (500)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00069 Score=63.58 Aligned_cols=212 Identities=11% Similarity=0.026 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 010807 196 KAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 274 (500)
...++.++...-++++...+ -.|+...+...+.+......-..+..++....+. .-...-|... ..+...|++++|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchH
Confidence 45667777777777765332 2455666666666555544444444444333331 1122223333 335577889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+..++.+...- +-|...+....+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|..+++.....
T Consensus 326 ~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 326 LKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99999988763 336666777888899999999999999998885332 2666777888899999999999999888776
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
. +-|...|..|.++|...|+..++..... ..|...|+++.|+..+....+.. +++..+
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~-~~~~~~ 461 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV-KLGFPD 461 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc-cCCcHH
Confidence 4 6678899999999999998887765543 34556788899988888877653 334333
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=3.3e-05 Score=62.72 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+. .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3445555666666666666666666543 33556666666666666666666666666666542 355666666666666
Q ss_pred cCChhhHHHHHHHHHhC
Q 010807 408 NGLPTEADLLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~ 424 (500)
.|++++|+..|+..+..
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00057 Score=64.75 Aligned_cols=325 Identities=13% Similarity=0.068 Sum_probs=210.7
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchH
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKA 197 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 197 (500)
....|+|+.|+..|....... ++|...|..-..+|.+.|++++|++==.+-.+ +.|+ ..-|.-.-.++. ..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~----~l 83 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF----GL 83 (539)
T ss_pred hcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH----hc
Confidence 345699999999999988875 67889999999999999999999876666655 3566 346777777777 78
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhCC---CCCCHHHHHHHHHHHhhc
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF------KELHESI---LAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------~~m~~~g---~~p~~~~~~~ll~~~~~~ 268 (500)
|++++|+.-|.+-.+.+ +.|...++-+..++..... +.+.| ..+.... .......|..++..+-+.
T Consensus 84 g~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred ccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 89999999999987643 5667778888877721110 11111 1111000 000112233333332211
Q ss_pred ----------CCHHHHHHHHHHH-----HhCC-------CCC----------------------CHHHHHHHHHHHhccC
Q 010807 269 ----------GMIKEMESVLSRM-----KSNQ-------CKP----------------------DIITFNLLIDSYGKRQ 304 (500)
Q Consensus 269 ----------g~~~~a~~~~~~m-----~~~~-------~~~----------------------~~~~~~~li~~~~~~~ 304 (500)
..+..+.-++... ...| ..| -..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111111111110 0000 111 1112456777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHhccCCHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--S----FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~~li~~~~~~~~~~~ 378 (500)
+++.|++.+...++.. -+..-++....+|...|.+.++...-....+.|-.. + ...+..+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 9999999999888754 456667777788888998888877777766655221 1 1122334456777788899
Q ss_pred HHHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 379 AREIFDELSKLGKDMKVST-------------------------LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
|+..|.+.......|+... ...=...+.+.|++..|+..|.+++... +-|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 9988887665333332211 1112455678899999999999999886 5678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
....-+|.+.|.+..|+.-.+...+.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999877766655
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00084 Score=60.23 Aligned_cols=196 Identities=11% Similarity=0.122 Sum_probs=135.2
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
++.+-...++..|+.+++.-...+. .....+---+...+...|++++|...|.-+.+.. .++...+..|..++.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~F---- 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKF---- 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHH----
Confidence 6677777899999999988765431 1111223335567778999999999999887743 566777777766666
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
-.|.+.+|..+-.+..+ +......|....-+.++-++...+.+.+.+. ..---+|.......-.+++|+
T Consensus 103 yLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHH
Confidence 78889999988766543 4555666777778889988888888777642 122233444444455689999
Q ss_pred HHHHHHHhCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 276 SVLSRMKSNQCKPDIITFNL-LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
+++.+.... .|+-...|. +.-+|.+..-++-+.++++-.++. ++.++..-|..
T Consensus 172 dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLk 225 (557)
T KOG3785|consen 172 DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLK 225 (557)
T ss_pred HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHH
Confidence 999999876 344444443 344678888899999988887765 33344444443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.0003 Score=71.83 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
++..+-.|..+..+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++....... +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 3445555555555555555555555555443222 3334444455555555555555555555544322 3444444445
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
++.+.|++++|+.+|+++...+. -+..++..+..++...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554211 2344555555555555555555555555544
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00034 Score=71.44 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 251 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330 (500)
Q Consensus 251 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (500)
...+...+..|.....+.|.+++|+.+++...+.... +......+..++.+.+++++|...+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3346777777888888888888888888888776332 4555667777788888888888888888775433 5666777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+...-|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7777888888888888888888733 3346777778888888888888888888777642 234455554432 3
Q ss_pred hhhHHHHHHHHHhCC----CCCCHHHHHHHHHHHHH
Q 010807 411 PTEADLLFENSHNMG----VTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~ 442 (500)
...-..+++.+.-.+ ...........|.-|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 333444555544332 22233444445554443
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00057 Score=58.97 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=52.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----c
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG----K 302 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~ 302 (500)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+-|..++. .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 334555555555555544311 22222222333344444555555555554431 2333333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.+.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++.....
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33445555555555443 3444444444555555555555555555554443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=7e-05 Score=60.76 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 44455666667777777777777666532 256667777777777777777777777777653 3456667777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 010807 373 CDNVSRAREIFDELSKLG 390 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~ 390 (500)
.|+.++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777776643
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=0.00051 Score=71.03 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=151.7
Q ss_pred ccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010807 106 VVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA 185 (500)
Q Consensus 106 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 185 (500)
....+....++..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+... .++..-|
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~-- 99 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKW-- 99 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccch--
Confidence 3445555678888888899999999999777653 33334444444477888887777666 33321 2222222
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 186 LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 186 li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 265 (500)
.-...+...|.. ...+...+-.+..+|-+.|+.++|..+|+++.+..+. |..+.|.+...|
T Consensus 100 ---------------~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ 160 (906)
T PRK14720 100 ---------------AIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSY 160 (906)
T ss_pred ---------------hHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 222222223332 1334457778899999999999999999999998754 889999999999
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (500)
+.. ++++|.+++.+.... |...+++..+.++|.++....+. +...+..+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~------------- 210 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE------------- 210 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH-------------
Confidence 999 999999998887654 55566778888888877664322 222222222
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 346 YVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 346 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 211 ---~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 ---RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222211 11122334444555566666777777777777665432 4555556666655
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.33 E-value=0.0011 Score=59.19 Aligned_cols=281 Identities=10% Similarity=0.033 Sum_probs=198.5
Q ss_pred hHHHHHHHhhh--ccCcchHHHHHHH---HcccCCHHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 010807 95 PLVRTLNKYVK--VVRSEHCFLLFEE---LGKSDKWLQCLEVFRWMQKQRWYIADTG-IYSKLIAVMGKKGQTRLAMWLF 168 (500)
Q Consensus 95 ~~~~~l~~~~~--~~~~~~~~~l~~~---l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 168 (500)
.+.+.+..|-. .+++..+..+++. +-..|+-..|+.-|..+.+. +||-. .--.-..++.+.|.++.|..-|
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 45555555543 3667777766654 33357777788888888774 56642 2333456788999999999999
Q ss_pred HHHHHcCCCCCHH--------------HHH--HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 010807 169 SEMRNSGCRPDPS--------------VYN--ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232 (500)
Q Consensus 169 ~~m~~~g~~p~~~--------------~~~--~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (500)
+.+++.. |+.. .|+ ..+..+. ..|+...|+.+...+.+.. +-|...|..-..+|..
T Consensus 130 ~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~----~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 130 DQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSAS----GSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHh----cCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHh
Confidence 9998863 3211 111 1111222 5678899999999998643 6788889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHH---------HHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT----FNLL---------IDS 299 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------i~~ 299 (500)
.|++..|+.=++...+..-. ++.++.-+-..+...|+.+.++....+..+. .||.-. |..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777665433 6677777788889999999999999998876 344322 2211 122
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
....++|.++++-.+.+++..+..... .+..+-.++...+++.+|++...+.+... +.|+.++.--..+|.-..++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHH
Confidence 345678888888888877765442333 34455667777899999999998888753 33478888888899989999
Q ss_pred HHHHHHHHHHHHCC
Q 010807 377 SRAREIFDELSKLG 390 (500)
Q Consensus 377 ~~A~~~~~~~~~~~ 390 (500)
+.|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888865
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.29 E-value=0.0063 Score=61.44 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.+.+..|...+..+++..|+. ....++..+.. .+.|+.++|..+++.....+ ..|..+...+-
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl--------------~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~ 84 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSL--------------FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQ 84 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH--------------HHhcCchhHHHHHhhhccCC--CCchHHHHHHH
Confidence 456678888888888877664 45555544332 13355555555555544433 23566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHH------------------------
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ------------------------ 208 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~------------------------ 208 (500)
.+|...|+.++|..+|+..... -|+......+..+|++..+-...-..|++++.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 6666666666666666666553 45555555555555532221222222344443
Q ss_pred ----------------HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 010807 209 ----------------KMKGMERCKPNIVTYNILLRACAQARNVDQVNALF-KELHESILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 209 ----------------~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
.+.+..|..-+..-.-.-.......|++++|..++ ....+.-...+...-+.-+..+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 33322211111111112222334456667777766 3333333333444445666677777777
Q ss_pred HHHHHHHHHHHhCCCC
Q 010807 272 KEMESVLSRMKSNQCK 287 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~ 287 (500)
.+..++-.++...|..
T Consensus 243 ~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 243 QELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7777777777776543
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=6.1e-05 Score=60.63 Aligned_cols=97 Identities=11% Similarity=-0.040 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.....+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|..+++.....+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666655543 2245556666666666666666666666655543 33455555555666
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 010807 441 TKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (500)
...|++++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0019 Score=55.41 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=123.9
Q ss_pred HcCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 232 QARNVDQVNALFKELHE---SI-LAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
...+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...= +-+..+-..-.--+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34567888888887753 33 4555533 5566666777888888888888877652 21222211111223446888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 386 (500)
++|+++++.+++.. +.|..++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888765 336666665555666667666777777666664 4667888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 010807 387 SKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNM 424 (500)
Q Consensus 387 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 424 (500)
.-.. +.++..+..+...+...| +..-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7754 345566666666654444 455677777777764
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=0.0001 Score=59.35 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445556666666777777777777766643 3356666667777777777777777777766654 3356666667777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
|...|++++|...|+...+. .|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 77777777777777776664 34444433
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=5.7e-06 Score=48.61 Aligned_cols=33 Identities=39% Similarity=0.610 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD 254 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (500)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=6.2e-06 Score=48.45 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=6.4e-06 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
.+|+.++.+|.+.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666677777777777777777776666665
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=0.001 Score=67.55 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a 203 (500)
+...|.+.|+...+.+ ..++..+......|++..+++.|..+.-..-+. -+.-...++..-.+.... ..++..+|
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyL--ea~n~h~a 581 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYL--EAHNLHGA 581 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhcccccc--CccchhhH
Confidence 3455666666665553 445566666777777777777776662222111 011122222222222222 56677788
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHHH
Q 010807 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG--VMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m 281 (500)
+..|+...+.+ +.|...|..++.+|...|.+..|.++|...... .|+ .+|.. ....-+..|.+++++..+...
T Consensus 582 V~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 582 VCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888777533 667888999999999999999999999877654 332 22222 223345678888888888776
Q ss_pred Hh
Q 010807 282 KS 283 (500)
Q Consensus 282 ~~ 283 (500)
..
T Consensus 657 i~ 658 (1238)
T KOG1127|consen 657 IY 658 (1238)
T ss_pred HH
Confidence 54
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0042 Score=53.39 Aligned_cols=189 Identities=11% Similarity=0.113 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHcc---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 123 DKWLQCLEVFRWMQKQR---WYIADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
.+.++.++++..+.... -..++. ..|..++-+....|+.+.|..+++.+...- |...-...+-..... ..|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lE---a~~ 100 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLE---ATG 100 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHH---Hhh
Confidence 44566666666654321 134454 347777778888888889999888887652 443322222222222 567
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
.+++|+++|+.+.+.+ +-|.++|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+
T Consensus 101 ~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred chhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 7888888888888643 566777776666666777777888877777765 3448888888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCC
Q 010807 279 SRMKSNQCKPDIITFNLLIDSYGK---RQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 279 ~~m~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~ 320 (500)
+++.-..+. +...+..+.+.+.- ..++..+.++|.+.++..
T Consensus 178 EE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 887765322 44444555554433 335566777777776643
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.10 E-value=7e-05 Score=70.96 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
+.+.+...+..+++.+....+++.+..++.+.+.. ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777777888888888888888888777763 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 478 (500)
++.|+..+.+.|++..|.++.-+|...+...+..|+.-.+-+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777776666555544
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.0015 Score=61.44 Aligned_cols=230 Identities=13% Similarity=0.004 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCcchHHH
Q 010807 125 WLQCLEVFRWMQK---QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 125 ~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~ 199 (500)
.....++|+.+.. .++.+| .. ++..=.-..++..+...-+.|+..+ -.|+...+...+.+..... .
T Consensus 219 p~gM~~ff~rl~~~~~~~~~~p-~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~----~ 289 (484)
T COG4783 219 PQGMPEFFERLADQLRYGGQPP-EY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL----P 289 (484)
T ss_pred chhHHHHHHHHHHHHhcCCCCC-hH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc----c
Confidence 3455678888874 332232 22 2222223345556666666665432 2456666666666554221 1
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (500)
-..+-.++.+..+ . .-...-|...+ .+...|++++|+..++.+++.-+. |..........+.+.++.++|.+.++
T Consensus 290 ~~~~~~~~~~~~~-~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~ 364 (484)
T COG4783 290 NQQAADLLAKRSK-R--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLK 364 (484)
T ss_pred ccchHHHHHHHhC-c--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1122222222221 1 22233444444 456789999999999998876433 66666777788999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 010807 280 RMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358 (500)
Q Consensus 280 ~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 358 (500)
++... .|+ ....-.+..+|.+.|++.+|+.+++...... +.|+..|..|..+|...|+..++..-..+...
T Consensus 365 kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----- 436 (484)
T COG4783 365 KALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA----- 436 (484)
T ss_pred HHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----
Confidence 99887 444 5666778889999999999999999988774 44899999999999999999998888777654
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
..|+++.|...+....+.
T Consensus 437 -------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 437 -------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -------------hCCCHHHHHHHHHHHHHh
Confidence 358888888888777764
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=6.5e-06 Score=48.00 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (500)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999987
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00047 Score=56.14 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=55.1
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChh
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPT 412 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~ 412 (500)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 122223334455556666666666655554422211 12333455555566666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
+|+..++..... ......+......+...|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666443222 12233444455556666666666665554
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00055 Score=64.70 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
.|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444555555555555555442 332 2234444444555555555555555432 224444444455555555
Q ss_pred ChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 410 LPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+++.|+.+.+++... .|+ ..+|..|..+|.+.|+++.|+..++.|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555554 232 335555555555555555555555443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00065 Score=55.29 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECII 367 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li 367 (500)
.|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+........++ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 36677777777777766533321 22333344666677777777777777777542222 12334456
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
..+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777778888877776644332 34556667777778888888888777653
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00042 Score=65.48 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
|+..+...++++.|+.+|+++.+.. |+ ....+...+...++-.+|.+++.+...... .+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 3444444455555555555555442 22 222344444444455555555555443321 134444444445555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
++.|+++.+++.... +.+-.+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555531 113345555555555555555555555544
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00024 Score=67.44 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
+...+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777777777777788888887777655 2212233445888888888888888888888777888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777766666666666666665554
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00053 Score=50.97 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELHESIL-APDIYTYNGVMDAYGKNG--------MIKEMESVLSRMKSNQCKPDIITFNL 295 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 295 (500)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555556777777777777777777 677777777776665532 22345555555655556666666665
Q ss_pred HHHHHh
Q 010807 296 LIDSYG 301 (500)
Q Consensus 296 li~~~~ 301 (500)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.0009 Score=61.08 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555566666555666666666666432 2233333333333 22245555566666666553 334566666666666
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..++..|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 6666666666666666554 22221 35666666666666666666666666643 33333333344433
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.79 E-value=0.057 Score=54.92 Aligned_cols=222 Identities=10% Similarity=0.094 Sum_probs=153.2
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV--MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
..++|..|++..+.+.++. |+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|- ..+
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~----d~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR----DLG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH----HHh
Confidence 4588999999999998874 232 34444444 45889999999999988766544 8888888888887 889
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---------
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--------- 269 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--------- 269 (500)
..++|..+|++.... .|+......+..+|.+.+++.+-.++--+|.+. ++-+.+.|=++++.+.+.-
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999863 677778888888999998887655554444443 2224444444454443321
Q ss_pred -CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 270 -MIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFK-SLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 270 -~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
-..-|.+.++.+.+.+ ..-+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666667766654 22222223333445567788999999994 33333334455555677788888999999999
Q ss_pred HHHHHHhCC
Q 010807 347 VFQKMTAMK 355 (500)
Q Consensus 347 ~~~~m~~~~ 355 (500)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 999998876
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.0008 Score=56.63 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 217 KPNIVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
..+-.+|..++..|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 44555666666666543 5566666667777777777777777777766543
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=2.9e-05 Score=44.02 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.0007 Score=50.36 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCD--------NVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555554444321 1223344444555444555555555554
Q ss_pred HHHH
Q 010807 403 EAYC 406 (500)
Q Consensus 403 ~~~~ 406 (500)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 4443
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.75 E-value=0.0099 Score=60.83 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
.+...|+..|-+....+ +--...|..|...|+...+...|.+.|+...+.... +......+.+.|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 34667777777666432 223567899999999988999999999998776443 667788899999999999999998
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 278 LSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 278 ~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
.-..-+.... .-..-|....-.|.+.++...|+.-|+...+..+. |...|..++.+|...|++..|..+|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4433332111 01112333455678889999999999998886444 8889999999999999999999999888774
Q ss_pred CCCHHHHHHH--HHHHhccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 357 TPSFITYECI--ITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 357 ~~~~~~~~~l--i~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
.|+. +|... ...-+..|++.+|...+..+.... ..--..++-.+...+...|-..+|..++++
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4543 23222 223456789999998888766411 011123343444444444555555555544
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.8e-05 Score=43.54 Aligned_cols=30 Identities=40% Similarity=0.526 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 176 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (500)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999988764
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00082 Score=49.59 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
.+...+...|++++|..+++.+.+... .+...+..+..++...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344445555666666666655555432 223455555555556666666666666555443 223345555555666666
Q ss_pred CHHHHHHHHHHHH
Q 010807 445 MKELVQKLLKRME 457 (500)
Q Consensus 445 ~~~~a~~~~~~m~ 457 (500)
+++.|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655544
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.002 Score=50.20 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=22.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+..++.+.|+++.|...|+.+...... ....++..+..++.+.|++++|...++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 444444444444444444444332111 0122333334444444444444444444443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0015 Score=50.96 Aligned_cols=100 Identities=14% Similarity=0.016 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT--PDSSTYKLL 436 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 436 (500)
.++..++..+.+.|++++|.+.|..+...... .....+..+..++.+.|++++|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667778888899999999999999875421 12456777899999999999999999998875311 125668888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999999773
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0029 Score=53.25 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+.+....... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455677788888888999999998888876543332 356777788888888888888888888775332 45566666
Q ss_pred HHHHhccCCHHHHH
Q 010807 297 IDSYGKRQAFDKME 310 (500)
Q Consensus 297 i~~~~~~~~~~~a~ 310 (500)
..+|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777766654443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00011 Score=53.44 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ ...+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777888888877775431 2344555577788888888888888877 2221 1223444455677788888888888
Q ss_pred HHHH
Q 010807 452 LLKR 455 (500)
Q Consensus 452 ~~~~ 455 (500)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.0011 Score=48.82 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+...+...|++++|..++++..+.... +...+..+...+...|++++|.+.++........ +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 333344444444444444444332211 2233333333444444444444444443333211 22233333334444444
Q ss_pred HHHHHHHHHHH
Q 010807 306 FDKMEQVFKSL 316 (500)
Q Consensus 306 ~~~a~~~~~~~ 316 (500)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.00078 Score=56.70 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 253 PDIYTYNGVMDAYGK-----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 253 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
-|..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 377777777777764 57888888999999999999999999999999876 3322 11111111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
..-| -.+.+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12345577777777777777777777777777776654
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.0019 Score=61.14 Aligned_cols=102 Identities=11% Similarity=-0.052 Sum_probs=77.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
...+...|++++|...|.++++.. +-+...|..+..+|...|++++|+..++.+..... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 455667788888988888888764 34577788888888888899999888888888653 3577788888888888888
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
++|+..|++.+.. .|+...+..++
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888888875 45544444443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.007 Score=50.88 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...... -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3455555566666666666666666655322221 24555556666666666666666666555432 23445555555
Q ss_pred HHHhcCChhhHH
Q 010807 404 AYCMNGLPTEAD 415 (500)
Q Consensus 404 ~~~~~g~~~~A~ 415 (500)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.52 E-value=0.008 Score=48.36 Aligned_cols=91 Identities=11% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+..-+...|++++|..+|+-+....+ -+..-|-.|..++-..|++.+|+..|....... +-|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 33334445555555555555554432 234445555555555555555555555555544 2344555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 010807 446 KELVQKLLKRMEQ 458 (500)
Q Consensus 446 ~~~a~~~~~~m~~ 458 (500)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.004 Score=59.06 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=74.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
...+...|+++.|++.|++.++.... +...|..+..+|...|++++|...++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44566778999999999988876443 67788888888888999999999998888764 34577788888888889999
Q ss_pred HHHHHHHHHHHHCC
Q 010807 377 SRAREIFDELSKLG 390 (500)
Q Consensus 377 ~~A~~~~~~~~~~~ 390 (500)
++|...|+...+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888865
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.48 E-value=0.0029 Score=50.82 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
....+...+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3444555556667777777777666655433 4455555666666666666666666666665543 5556666666666
Q ss_pred ccCCHHHHHHHHHHHHh
Q 010807 302 KRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (500)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0035 Score=52.47 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=46.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
.|..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..+++..... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444445555555555555555554432111 12345555555666666666666665555432 1123334444444
Q ss_pred HH-------HcCCHHHHHHHHHHH
Q 010807 440 YT-------KANMKELVQKLLKRM 456 (500)
Q Consensus 440 ~~-------~~g~~~~a~~~~~~m 456 (500)
+. ..|+++.|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 44 566666555555443
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.062 Score=47.82 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=37.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI---YSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
......+.|++++|++.|+.+.... +.+... .-.++.++.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444445678888888888877753 222222 234566777788888888888887765
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0031 Score=57.55 Aligned_cols=129 Identities=9% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
+|..+++..-+.+..+.|..+|.+..+.+. ...+....+++.. ...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344444444444444444444444443211 1122222222221 1123444455555544443 233444444444444
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
...++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555544433 1111 12445555554555555555555554444
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.0077 Score=55.20 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----CCHH-HH
Q 010807 366 IITMYGYC-DNVSRAREIFDELSK----LGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-----PDSS-TY 433 (500)
Q Consensus 366 li~~~~~~-~~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~ 433 (500)
+...|... |++++|.+.|++..+ .+.+ .-...+..+...+.+.|++++|.++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445555 666666666665544 1200 01234455566677777777777777766543211 1121 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHH
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQN--GIVPNK--RFFLEALETF 475 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~ 475 (500)
...+-.+...||...|.+.+++.... ++..+. .+...+|.+|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 33344555667777777777776643 343332 3345555555
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0038 Score=52.25 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555444322111 122444444455555555555555544443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00027 Score=51.32 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=3.2
Q ss_pred ccCCHHHHHH
Q 010807 302 KRQAFDKMEQ 311 (500)
Q Consensus 302 ~~~~~~~a~~ 311 (500)
+.|++++|++
T Consensus 70 ~l~~y~eAi~ 79 (84)
T PF12895_consen 70 KLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHH
T ss_pred HhCCHHHHHH
Confidence 3333333333
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0047 Score=54.61 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=50.9
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
..+.+++++|+..|.+.++.... |.+.|..=..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 44555666666666666555332 4555555555666666666665555555442111 234555666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 010807 345 EYVFQKMTAMKYTPSFITY 363 (500)
Q Consensus 345 ~~~~~~m~~~~~~~~~~~~ 363 (500)
.+.|++.++ +.|+..+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 666555555 34444443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.014 Score=53.52 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.|......|...|++++|.+.|.+....-...+.. +. ....+.+|-.++.+... .--+..|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-~~-----------Aa~~~~~Aa~~~k~~~~----~~Ai~~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK-FE-----------AAKAYEEAANCYKKGDP----DEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-HH-----------HHHHHHHHHHHHHHTTH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH-HH-----------HHHHHHHHHHHHHhhCH----HHHHHHHHHH
Confidence 45666667777788888888887764321111100 00 11223334444433310 1112345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-GMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSY 300 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~ 300 (500)
+..|...|++..|-+++..+- ..|-.. |++++|++.|++..+. |.. .-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 567777777777777665543 345555 6777777777765432 211 0123455666677
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCC--HHHHHHHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKP-----TL-PTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPS--FITYECIITMY 370 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~--~~~~~~li~~~ 370 (500)
.+.|++++|+++|+++....... +. ..|...+-++...||...|...++...... +..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 77788888888887776542211 11 123333445555677777777777765432 2222 33445555555
Q ss_pred hc--cCCHHHHHHHHHHHH
Q 010807 371 GY--CDNVSRAREIFDELS 387 (500)
Q Consensus 371 ~~--~~~~~~A~~~~~~~~ 387 (500)
-. ...++.+..-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 43 223444444444443
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0043 Score=54.81 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=74.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
.-..+.+++++|+..|...++.. +-|.+.|..=..+|.+.|+++.|++-.+..+..+.. -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34567788888888888888753 445667777788888888888888888777775422 3567888888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
+|++.|++.++. .|+-.+|..=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 888888887764 666666554333
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.11 Score=46.14 Aligned_cols=175 Identities=13% Similarity=0.046 Sum_probs=91.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITF---NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-- 337 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 337 (500)
..+.+.|++++|.+.|+++...-..+ .... -.+..+|.+.+++++|...+++.++..+.....-|...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445666666666666666542221 1111 23445666677777777777776665333222233223333221
Q ss_pred c---------------CCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 338 A---------------RLQ---GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 338 ~---------------~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
. .+. .+|...|+.++ .-|-...-..+|...+..+...= ...--
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~l----a~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRL----AKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHH----HHHHH
Confidence 1 011 22333333333 33333333444544444333210 11112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+..-|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|..+.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677888888888888887764 223345566677788888888888877665443
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.018 Score=57.13 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...|..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555444445566666666666666544 35556666666666666666666666655543
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0014 Score=45.25 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 187 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 187 (500)
+.|++++|++.|+.+.... +.+...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4688999999999988763 668888888999999999999999999998876 57766655554
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.047 Score=54.29 Aligned_cols=137 Identities=10% Similarity=0.003 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHH
Q 010807 320 KEKPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYC--------DNVSRAREIFDE 385 (500)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------~~~~~A~~~~~~ 385 (500)
+.+.+...|...+.+.... +..+.|..+|++..+. .|+ ...|..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3556778888888775443 2366888899988885 455 44444443333221 123444455544
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 386 LSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 386 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.... ....+...|.++...+...|++++|...++++...+ |+...|..+...+...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4332 233456788888777778899999999999999874 788999999999999999999999999887553
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.024 Score=43.86 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMN 408 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 408 (500)
.++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..++++....... .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555543332 223334444555555555555555554442111 0111122222344455
Q ss_pred CChhhHHHHHHHHH
Q 010807 409 GLPTEADLLFENSH 422 (500)
Q Consensus 409 g~~~~A~~~~~~m~ 422 (500)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.31 Score=48.43 Aligned_cols=42 Identities=5% Similarity=-0.007 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALET 474 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 474 (500)
|-.|.+-....|.++.|++.--.+.+. .+-|....|.-+.-+
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 334444455678888888776666554 566666666544433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.022 Score=44.09 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=80.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD----SSTYKLLYK 438 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~ 438 (500)
.+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 355677789999999999999999886543 345666778899999999999999998875 243 223333445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010807 439 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 477 (500)
++...|+.++|+..+-.... ++..-|...|..|+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 77889999999998876654 344477777777653
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0019 Score=44.57 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|++++|.++|+.+....+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666654322 5555556666666666666666666665554
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.084 Score=45.91 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 210 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~ 210 (500)
-+.++..+...|.+.-...++.+..+...+.++.....|.+.-. +.|+.+.|...|+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M----Q~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM----QIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH----hcccHHHHHHHHHHH
Confidence 34444444455555555555555555433334444444444333 444555555555533
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.0032 Score=43.56 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 010807 395 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRME 457 (500)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 457 (500)
+.+|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4445555555555555555555555555542 223445555555555555 4555555555444
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.98 E-value=0.0033 Score=42.87 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=23.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+...|++++|.+.|+.+.+..+ -+...+..+..++...|++++|...|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444331 134444444444444444444444444443
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.18 Score=43.55 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=41.0
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
-...-..|++.+|++.|+.+.......+ -....-.++.++.+.|+++.|...|+++.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444567899999999999887632211 2345667788888999999999999998775
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.48 Score=47.15 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
..|-.|..--...|.++.|+..--.+.+. .+-|....|..|.-+-+....+...-+.|-++....--|+.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 34444445556678888887766555542 46677888888877766666666666666555554433443
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.0058 Score=49.77 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 467 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 467 (500)
.....++..+...|++++|..++..+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445666777777888888888888877764 44677888888888888888888888877753 388888765
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.27 Score=48.38 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH---------
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--------- 395 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 395 (500)
..+...+...+.+...+.-|.++|..|-.. ..+++.+...+++++|..+-+...+. .||+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444444445556666777777766432 34677777888888888777766552 1222
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 396 --STLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 396 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.-|...-.+|.+.|+-.+|..+++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11233345667777777787777776554
No 191
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.89 E-value=0.029 Score=43.87 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
|..++..+|.++++.|+++....+++..= |+.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566677777777777777666664332 2211110 00000 1122346788888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcCCCCC
Q 010807 439 AYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
+|..+|++..|+++++...+. ++..+..++..+++-+....+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 888888888888888888765 78878888888888776655543
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.078 Score=47.32 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
+-|...|..|..+|...|+++.|..-|....+.. .+++..+..+..++.... ...++..+|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4567788888888888888888888888777753 346777777766665433 3466788888887764 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777778888888888888888888663
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.87 E-value=0.0066 Score=41.35 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+...+.+.|++++|...|+++++.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999885 336778888999999999999999999998754
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.85 E-value=0.11 Score=48.19 Aligned_cols=131 Identities=8% Similarity=-0.039 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCC-CCCHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKM----TAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSK----LGK-DMKVS 396 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~ 396 (500)
.|..|...|.-.|+++.|+...+.- ++.|-. .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444444555555555444322 222211 1123455555566666666666655553322 111 11233
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+.-+|...|.-..++++|+.++.+-... ...-....+..|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445555555555666666655442210 011234556666666666666666666555443
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.41 Score=44.67 Aligned_cols=156 Identities=12% Similarity=-0.012 Sum_probs=91.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCCHHHH------------
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID--SYGKRQAFDKMEQVFKSLMHSKEKPTLPTF------------ 328 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 328 (500)
.++.-.|+.++|..+-....+..-. + .+...++ ++.-.++.+.+...|++.+..+ |+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 4556678888888877776655322 2 2333332 3444678888888888877643 333211
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 329 -NSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 329 -~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
..-..-..+.|.+..|.+.|.+.+.. .+.++...|.....+..+.|+..+|+.--++..+.+.. -+..|..-..+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 11122234667777777777777653 24455666777777777777777777777776664310 01122222334
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...++|++|.+-|++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777766554
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.39 Score=44.45 Aligned_cols=282 Identities=11% Similarity=0.032 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV--MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
|+-..|.++-.+..+. +..|..-.-.++.+ -.-.|+.+.|.+-|+.|.. |..+-..=+.++.-.....|+.
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 4555555544433322 22333333333332 2345777777777777764 2233222233332222256666
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHhh---cCCHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYT--YNGVMDAYGK---NGMIKEM 274 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~---~g~~~~a 274 (500)
+.|.++-+..-+. -+.-.+.+...+...|..|+|+.|+++++.-+... +.++..- -..|+.+-+. ..+...|
T Consensus 171 eaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 6666666665532 13345667777777777777777777777654432 3333321 1222221111 1223333
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 275 ESVLSRMKSNQCKPDIITF-NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+..+.|+... +-.+.+.|+ .+.+-++...+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHH
Confidence 333333222 23333221 1223455666666666666666665544443321 111223333 23332332222
Q ss_pred -CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHh
Q 010807 354 -MKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHN 423 (500)
Q Consensus 354 -~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 423 (500)
..++|| ......+..+-...|++..|..--+..... .|....|..|...-.. .|+-.++...+.+...
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 112333 344444555555566666555544444432 3445555555544333 2666666666655554
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.0063 Score=42.02 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 423 (500)
..+|..+...+...|++++|+..|++..+... -+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666666667777777777776666542 25566666666777776 56777776666554
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.043 Score=49.27 Aligned_cols=87 Identities=8% Similarity=-0.043 Sum_probs=35.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKE 447 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~ 447 (500)
+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.- -......+..+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 33444444444444444321110 1233344444444555555555554444321 0011222333333444445555
Q ss_pred HHHHHHHHHHH
Q 010807 448 LVQKLLKRMEQ 458 (500)
Q Consensus 448 ~a~~~~~~m~~ 458 (500)
+|..+|++..+
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.78 E-value=0.23 Score=40.92 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCC
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI---LAPD 254 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 254 (500)
|++..--.|-.++. ..|+..+|...|++... +-...|......+.++....+++..|...++.+.+.. -.||
T Consensus 87 pTvqnr~rLa~al~----elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 87 PTVQNRYRLANALA----ELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhHHHHHHHHHHHH----HhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 44443344444444 45555555555555543 2233444455555555555555555555555554432 1122
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 255 IYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
+.-.+...+...|...+|..-|+.....
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 2223344455555555555555555543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.78 E-value=0.23 Score=40.90 Aligned_cols=126 Identities=8% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITY 363 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~ 363 (500)
.|++..--.|..+....|++.+|...|++...--..-|......+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555555666666666666666666665544344455556666666666666666666666665532 1222 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
-.+.+.+...|...+|+.-|+.....- |+...--.....+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 345556666666666666666666543 333333333444555565555543
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.089 Score=46.97 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... .+-.++..+|+++.+.+. -|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 77788888888888888888888888877742 34555555555554332 235677888888887653 36777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7778888888888888888888763
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.49 Score=44.47 Aligned_cols=163 Identities=13% Similarity=0.016 Sum_probs=77.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|..++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555555666666555554431 01111111222333334 5556666666555444333455555555554
Q ss_pred HHhc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh----hHHHHH---H-HHHhCCC---CC
Q 010807 369 MYGY---------CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT----EADLLF---E-NSHNMGV---TP 428 (500)
Q Consensus 369 ~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~-~m~~~~~---~p 428 (500)
.|-. ...+++|+..|.+.-+.. ||...--.+.-.+.-.|... +..++- . ...+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566666666554432 33332222222233333211 112221 1 1112221 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|-..+..++.++.-.|+.++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555677777888888888888888888866
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.016 Score=47.19 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHHhcCC-------CchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHH
Q 010807 75 EELESKELVRVLMRSFSD-------KEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI 147 (500)
Q Consensus 75 ~~~~a~~l~~~l~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (500)
.+..+...+...+..+.. ..++......+.+..-......+++.+...|++++|+...+.+.... +.|...
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~ 98 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEA 98 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHH
Confidence 334555555555554411 11233333333333333444556666667888888888888888874 667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRN-----SGCRPDPSVY 183 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 183 (500)
|..+|.+|...|+...|.++|+.+.. .|+.|+..+-
T Consensus 99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 88888888888888888888888753 4777776653
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.62 E-value=0.4 Score=41.43 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=82.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
..+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...++++++.-+.....-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3345566666666666666554111 11223345556666667777777777766654332222222222222211110
Q ss_pred HhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 341 QGKAEYVFQKMTAMKYTPS-------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
..... . ...| ...+..++.-|=...-..+|...+..+.+.= ...--.+...|.+.|.+..
T Consensus 93 ~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 93 IPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred Cccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence 00000 0 0001 1234445555555566666665555554320 1111235667788888888
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010807 414 ADLLFENSHNMGVTPD----SSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~ 450 (500)
|..-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888887775 333 334566777777877776443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.065 Score=48.18 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLI 297 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li 297 (500)
.|...+..+.+.|++++|+..|+.+.+..+... ...+..+...|...|++++|...|+.+.+.-.. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555666666666666665432211 234455556666666666666666666543111 1122333344
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.++...|+.++|..+|+.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666553
No 206
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.52 E-value=0.63 Score=42.54 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCH-----
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIADT------GIYSKLIAVMGKKGQTRLAMWLFSEMRNS--------GCRPDP----- 180 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~----- 180 (500)
++|+++.|...+.++.... ...|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5688888888888876643 233333 23444444444433888887777765432 122332
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 181 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260 (500)
Q Consensus 181 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 260 (500)
.+...++.+|...+ .....++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++..|...-.. ....+..
T Consensus 85 ~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWD-TYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 35556666776555 4556777888888886532 223455556666677788888888888888775321 2333444
Q ss_pred HHHHH---hhcCCHHHHHHHHHHHHhCCCCCCH
Q 010807 261 VMDAY---GKNGMIKEMESVLSRMKSNQCKPDI 290 (500)
Q Consensus 261 ll~~~---~~~g~~~~a~~~~~~m~~~~~~~~~ 290 (500)
++..+ ... ....|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44333 332 234555555555544444443
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.75 Score=42.71 Aligned_cols=111 Identities=16% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+.+..|.-+...|+...|.++-.+. -.|+...|...+.+++..++|++...+-.. . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 3445556666778888888777766 346888888888888888888877765432 1 23366778888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+.|+..+|..+... ++ +..-+..|.+.|++.+|.+.--+..
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88888888877765 11 2455677888888888877655443
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=1.2 Score=44.87 Aligned_cols=312 Identities=9% Similarity=0.033 Sum_probs=166.4
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQT--RLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.++..+...+.+..|+++-+++.... ..+..+|......+.+..+. +++.+..++=......|....-+..-.+|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay- 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY- 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH-
Confidence 35666666788888999988886542 11245677777777766432 23333333333322344444433333444
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----------CCCCHHH
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCK---PNIVTYNILLRACAQARNVDQVNALFKELHESI-----------LAPDIYT 257 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~~~ 257 (500)
.+|+.+-|..+++.=....... .+..-+...+.-+.+.|+.+....++-.+...- .+.....
T Consensus 519 ----~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 519 ----QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred ----hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 7889999998887654321111 122235566777888899888888877765431 0111111
Q ss_pred HHHHHHH--------HhhcCCHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHhccCCHHHH----------HHHH
Q 010807 258 YNGVMDA--------YGKNGMIKEMESVLS--RMK----SNQCKPDIITFNLLIDSYGKRQAFDKM----------EQVF 313 (500)
Q Consensus 258 ~~~ll~~--------~~~~g~~~~a~~~~~--~m~----~~~~~~~~~~~~~li~~~~~~~~~~~a----------~~~~ 313 (500)
|..+++. +...++..++...|. ... ..|..|+ .....++|.+.....-. +++.
T Consensus 595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ 671 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQ 671 (829)
T ss_pred HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2222210 011111111111111 000 0112222 22333344443321111 1122
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 314 KSLMHS-KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
+.+... |.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+....
T Consensus 672 ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---- 743 (829)
T KOG2280|consen 672 RTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---- 743 (829)
T ss_pred HHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----
Confidence 222211 222233344455556667788888877766554 47778888888888888888876665544331
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
+.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++.-
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~~------l~---ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVGG------LQ---EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccCC------hH---HHHHHHHHhccHHHHHHHHH
Confidence 34456677888888888888888765321 11 55677888888888776543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.41 E-value=0.024 Score=39.56 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=31.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|.+.+++++|.++++.+...++. ++..|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666666666665555322 4555555555566666666666666655544
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.27 Score=48.59 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHcCcchHHHHH
Q 010807 128 CLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPD-----PSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 128 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~~~~~~~~~~ 201 (500)
...+|.-+... +||. +..++...+=.||-+.+++++.+..+.+ +.-. ...|+..+..++.........+
T Consensus 176 G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 44455555543 3332 4556666666666666666666654421 1111 1233444443332200244566
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNI-LLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
.|.++++.+... -|+...|.. -.+.+...|++++|++.|+...... .......+--+.-.+.-..++++|.+.
T Consensus 251 ~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 251 EAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 777777777652 455444443 3455566777777777777554311 122333444455566677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHhccCCH-------HHHHHHHHHHH
Q 010807 278 LSRMKSNQCKPDIITFNLLI-DSYGKRQAF-------DKMEQVFKSLM 317 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~~~ 317 (500)
|..+.+..-- +..+|.-+. .++...++. ++|.++|.++.
T Consensus 328 f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777765322 333333322 233445555 77777777654
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.31 E-value=0.36 Score=39.26 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=46.2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666555543 23344445555555556666666666655444332 13333444555666666666666
Q ss_pred HHHHHHHh
Q 010807 416 LLFENSHN 423 (500)
Q Consensus 416 ~~~~~m~~ 423 (500)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66665554
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.016 Score=41.18 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNM----GV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666554432 10 111 3455556666666666666666666544
No 213
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.28 E-value=0.52 Score=43.19 Aligned_cols=137 Identities=11% Similarity=0.204 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCC-
Q 010807 161 TRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARN- 235 (500)
Q Consensus 161 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~- 235 (500)
+++...+++.|.+.|+.-+..+|-+...... ...+......+|..+|+.|++.... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 4566788999999999998888877444333 2233456788899999999874321 3445556666544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 236 ---VDQVNALFKELHESILAPDI--YTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 236 ---~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 35567777888777765443 333344433332222 34677778888888887777766655443
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.24 E-value=0.13 Score=40.25 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 407 (500)
...|+..+..+++.+|+..+++..|.++.+...+ .+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3567777777777777777777777777776654 4456667777777765443
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.23 E-value=1 Score=41.85 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+..|.-+...|+...|..+-.+.. .|+...|..-+.+++..++|++-.++... . -.+..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556677778899888888866553 48999999999999999999988776432 1 13577889999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988872 2 245567788999999988765443
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.22 E-value=0.94 Score=41.39 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 257 TYNGVMDAYGKNGMIK---EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445555555555433 344444444333221 2333434445555566666666666666654
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.21 E-value=0.42 Score=38.89 Aligned_cols=91 Identities=7% Similarity=-0.040 Sum_probs=75.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
..-+...|++++|..+|.-+...++ .+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3344568999999999998887654 367788899999999999999999999876655 24555677788899999999
Q ss_pred HHHHHHHHHHHHC
Q 010807 447 ELVQKLLKRMEQN 459 (500)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (500)
+.|...|+...+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988873
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.017 Score=41.01 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSK----LGKD-MK-VSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+|+.+...|...|++++|+..|++..+ .|.. |+ ..+++.+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666666666665543 1111 11 4456666666667777777776666544
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.16 E-value=1.1 Score=41.61 Aligned_cols=295 Identities=13% Similarity=0.048 Sum_probs=187.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH--H
Q 010807 148 YSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT--Y 223 (500)
Q Consensus 148 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 223 (500)
|..|-.++. -.|+-..|.++-.+-.+. +.-|..-...++.+-... -.|+++.|.+-|+.|.. .|.... .
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal--~eG~~~~Ar~kfeAMl~----dPEtRllGL 157 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL--LEGDYEDARKKFEAMLD----DPETRLLGL 157 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH--hcCchHHHHHHHHHHhc----ChHHHHHhH
Confidence 444444443 467888888877665432 344555555555544332 56889999999999996 333222 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIIT--FNLLIDSY 300 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~ 300 (500)
..|.-...+.|+.+.|.+.-++.-..-.. -.-.....+...+..|+++.|+++++.-++.. +.++..- -..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333445689999999888887654332 34567788999999999999999999866542 3334321 12233221
Q ss_pred h---ccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 301 G---KRQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 301 ~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
. -..+...|...-.+..+ ..||.. .-..-..++.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc
Confidence 1 12345566665555444 445533 223345778899999999999999998754444 332 2334455653
Q ss_pred HHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSK-LGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~ 453 (500)
++.-++...+ ..++| +..+--.+..+-...|++..|..--+..... .|....|..|.+.- ...||-.++..++
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 2222222221 11222 4666777788888999999988777776654 78888888888855 4559999999999
Q ss_pred HHHHHCC
Q 010807 454 KRMEQNG 460 (500)
Q Consensus 454 ~~m~~~g 460 (500)
.+..+.-
T Consensus 387 Aqav~AP 393 (531)
T COG3898 387 AQAVKAP 393 (531)
T ss_pred HHHhcCC
Confidence 8887653
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.13 E-value=1.1 Score=41.19 Aligned_cols=132 Identities=13% Similarity=0.230 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGK--NG----MIKEMESVLSRMKSNQCK---PDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~ 306 (500)
+++.+.+++.|.+.|+.-+..+|-+....... .. ....+.++|+.|++.-.. ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556778888888888777777654333332 22 245678888888876322 344455555443 33332
Q ss_pred ----HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 307 ----DKMEQVFKSLMHSKEKPTL--PTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 307 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
+.++.+|+.+.+.|...+- .....++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4566677777776665432 233333332222222 33566777777777777766666555443
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.09 E-value=0.049 Score=50.37 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh----CC-CCCCH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELS----KLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MG-VTPDS 430 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~ 430 (500)
..|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457777788888899999987765332 23311 1245678899999999999999999886432 22 12345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhcCCC
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQN-----GIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~ 480 (500)
.....|.+.|.-..+++.|+.++.+-..- ...-....+.++-.+|...|.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 56677888888888889998887654421 122233445555555544433
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.05 E-value=0.05 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV 182 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 182 (500)
.+.+.++|+.|+++++.+.... +.+...|.....++.+.|++++|...|+...+. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3456788888888888888864 557777888888888889999998888888875 454443
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.03 E-value=0.079 Score=46.56 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC----------------CHHHHH
Q 010807 217 KPNIVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 275 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~ 275 (500)
+.|-.+|..++..+... +.++-....++.|.+.|++-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45666666666666543 556667777778888888888888888887754432 224477
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+++++|...|+.||-.+-..|++++++.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 888888888888888888888888877664
No 224
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.99 E-value=2.8 Score=44.80 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHhhcCCH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM----DAYGKNGMI 271 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~ 271 (500)
..+++++|+.-+..+.. ..|.-.++.--+.|.+++|+.++ .|+...+..+. +.+...+.+
T Consensus 892 ~L~ry~~AL~hLs~~~~--------~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~ 955 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECGE--------TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMS 955 (1265)
T ss_pred HHHHHHHHHHHHHHcCc--------cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccc
Confidence 44667777777766652 12333444455666677776666 34554444433 333445566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
++|.-.|+..-+ ..-.+.+|..+|+|++|..+..++... .+.. +-..|+.-+...+++-+|-+++.
T Consensus 956 ~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 956 DEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred cHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 666555554422 133455666667777776666655321 1111 12445555666666666666655
Q ss_pred HHH
Q 010807 350 KMT 352 (500)
Q Consensus 350 ~m~ 352 (500)
+..
T Consensus 1024 e~~ 1026 (1265)
T KOG1920|consen 1024 EYL 1026 (1265)
T ss_pred HHh
Confidence 544
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.97 E-value=1.5 Score=41.54 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY-KLLYK 438 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 438 (500)
.+|.+.++...+...++.|..+|-++.+.+ +.+++.++++++.-++. |+..-|..+|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888788888999999999999887 56788889999887775 6778888888764443 3454444 34455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCCC
Q 010807 439 AYTKANMKELVQKLLKRMEQNGIV--PNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~ 481 (500)
.+..-++-+.|..+|+....+ +. .-...|..+|+-=..-|+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 566677777777777644432 11 1134555555544444444
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=1.1 Score=39.36 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE-----CI 366 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~l 366 (500)
..+.++.+....|.+.-....+.++++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456666667777888888888888777666677777778888888888888888888766543233333333 33
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
...|.-.+++..|...+.++...+.. |+...|.=.-+....|+...|++.++.|... .|...+-+.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34456667777788888777776532 5555665555666677888888888888775 45555544443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.17 Score=48.29 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777666664 3442 24666666666677777777766666664
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.84 E-value=0.5 Score=36.61 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+...+.|+-+.-.+++.++... -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333344444444444433321 22333333344444444444444444444444333
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.79 E-value=0.15 Score=48.53 Aligned_cols=101 Identities=7% Similarity=-0.061 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
+.+...++.+..+|...|++++|+..|++.++.+..... .+|..+..+|...|+.++|++.+++.++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 345788999999999999999999999999886533211 458999999999999999999999998752 11 222
Q ss_pred HHHH--HHHHcCCHHHHHHHHHHHHHCCC
Q 010807 435 LLYK--AYTKANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 435 ~li~--~~~~~g~~~~a~~~~~~m~~~g~ 461 (500)
.+.. .+..-.+.++..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122333455666666666654
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=2.6 Score=42.70 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+.+--+.-+...|+-.+|.++-.+. -.||-..|-.-+.+++..+++++.+++-+.+.. +.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 4445555566779999999888877 457888898899999999999988777655442 345667899999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
+.|+.++|.+++-+.... . -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 999999999988654321 1 567889999999999877655
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.84 Score=36.65 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33333334444444444444444332 233344444444443
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.63 E-value=2 Score=40.44 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAVMGK---KGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
.++-.+....+|+..+++++.+...... .....+-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444555556666666666666554211 1112222233344445 6666666666666544444555555555554
Q ss_pred HH
Q 010807 189 AH 190 (500)
Q Consensus 189 ~~ 190 (500)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 233
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=2 Score=40.30 Aligned_cols=261 Identities=12% Similarity=0.052 Sum_probs=152.0
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-----CCCH--HHHHHHHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GC-----RPDP--SVYNALITAHL 191 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-----~p~~--~~~~~li~~~~ 191 (500)
+..++..|+..+....+.. +.++.-|..-...+...|++++|.--.+.-.+. |. +++. .....+|.+..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 4456777777777777653 445666777777777777777766555443321 11 1111 11122222221
Q ss_pred cCcc-hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhh
Q 010807 192 HTRD-KAKALAKALGYFQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMD--AYGK 267 (500)
Q Consensus 192 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~ 267 (500)
...+ ..+....++..++.......-+|...+|-.+- ..+.-.|+.++|.++--..++... ...+...++ ++.-
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYY 215 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccccccc
Confidence 1100 11122233333333332222234445554443 344567889999888777766532 223333333 4455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHH----------HhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFN---LLIDS----------YGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSM 331 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~----------~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 331 (500)
.++.+.+...|++....+ |+...-. ..... ..+.|.+..|.+.|.+.+... ..++...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 778899999999887663 3333222 22222 246899999999999987643 34566678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..+..+.|+..+|+.--+...+.. +. ...|..-..++.-.++|++|.+-|+...+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888889999999999888877632 21 2233333445666788999999998887754
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.60 E-value=0.14 Score=45.11 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------CHHHHHH
Q 010807 253 PDIYTYNGVMDAYGK-----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----------------AFDKMEQ 311 (500)
Q Consensus 253 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 311 (500)
-|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355666666655543 4567777788899999999999999999999886632 2246789
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQ-GKAEYVFQKMT 352 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 352 (500)
++++|...|+.||..+-..+++++++.+-. .+...+.-.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999887653 33444444443
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.55 E-value=0.25 Score=48.04 Aligned_cols=151 Identities=7% Similarity=0.037 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHH--HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 010807 197 AKALAKALGYFQ--KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 197 ~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 274 (500)
.++++++.++.. ++. ..++ ....+.++..+.+.|..+.|+++..+-. .-.....+.|+++.|
T Consensus 274 ~~d~~~v~~~i~~~~ll--~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLL--PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp TT-HHH-----HHHHTG--GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred cCChhhhhhhhhhhhhc--ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 445666555554 222 1111 3446777777777777777777764321 223445567777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.++.++. .+...|..|.+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+....+.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7665433 256677777777777777777777777642 2455666667777777777776666665
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
|- ++....++.-.|+.++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 51 3444444445566666665554
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.53 E-value=2.3 Score=40.41 Aligned_cols=130 Identities=16% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
.+|...+.+-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|.++|+--... ++-+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456677777777788899999999999988 6678888999998877 58888999999854443 22233344566777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+...++-+.|..+|+..+.. +.-+ ...|..+|.--..-|+...+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 78889999999999865542 1222 45788888887888888877777777764
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=1.7 Score=43.03 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=117.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHH
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL------PTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFIT 362 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 362 (500)
+..+++..+=.||-+.+++.+.+..+.+-...+ -.|+..+..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 456666777788888888888876554222122 234444444333 45678899999999885 467655
Q ss_pred HHH-HHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 363 YEC-IITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 363 ~~~-li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
|.. -.+.+...|++++|.+.|+...... .+.....+--+..+++-.++|++|.+.|..+.+.. .....+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 543 3456777899999999999765411 12233445566777888999999999999998864 334555555555
Q ss_pred HH-HHcCCH-------HHHHHHHHHHHHC-----C-CCCCHHHHHHHHHHHhcC
Q 010807 439 AY-TKANMK-------ELVQKLLKRMEQN-----G-IVPNKRFFLEALETFSSS 478 (500)
Q Consensus 439 ~~-~~~g~~-------~~a~~~~~~m~~~-----g-~~p~~~~~~~ll~~~~~~ 478 (500)
+| ...|+. ++|.++|++.... | -.|-......=++.|...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 43 456777 8888888877542 2 224344444445555444
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=1.6 Score=37.85 Aligned_cols=207 Identities=11% Similarity=0.109 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 224 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (500)
...|.....+|....++++|...+.+..+- .+.+...|. ....++.|.-+.+++... .--+..|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-----------AAKayEqaamLake~~kl---sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-----------AAKAYEQAAMLAKELSKL---SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-----------HHHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 456777888888899999999888777632 233443333 233466666666666542 22344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---QC--KPDIITFNLLIDS 299 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~ 299 (500)
-....|..+|..+.|-..++..-+. .+.-++++|+++|++.... +- ..-...+..+-..
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 7778888888888887777665331 2233445566655543221 10 0112223344445
Q ss_pred HhccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHh
Q 010807 300 YGKRQAFDKMEQVFKSLMHS----KEKPTL-PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 371 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~ 371 (500)
+.+...+++|-..|.+-... ...++. ..|-..|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55556666555444332110 011111 234444445555556666666666543322 1123455566666654
Q ss_pred ccCCHHHHHHHH
Q 010807 372 YCDNVSRAREIF 383 (500)
Q Consensus 372 ~~~~~~~A~~~~ 383 (500)
.||.+++..+.
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 45555555443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.32 Score=45.29 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+++.+..+|.+.+++.+|+..-...+..+ ++|....-.=..+|...|+++.|+..|+++.+..+ -|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 456677777888888888888888877765 56677777777788888888888888888887542 2445555555555
Q ss_pred HhcCChhh-HHHHHHHHHh
Q 010807 406 CMNGLPTE-ADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~-A~~~~~~m~~ 423 (500)
-+..++.+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 55544433 3667777654
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.38 E-value=1.1 Score=35.90 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 244444444444443
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.33 E-value=3.4 Score=41.13 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.+|.+.|+-.+|.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 345555666666666665544
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.76 E-value=1.5 Score=34.09 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (500)
+...++.....|+-|.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555555555432 234455555555556666665555555555555544
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.75 E-value=4 Score=38.94 Aligned_cols=385 Identities=11% Similarity=0.111 Sum_probs=202.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHcc---CCCCCHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQR---WYIADTGIYS 149 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 149 (500)
++....|.+.+....+...+..+..--++.+....+.--.....+.+.+.|++.++..+++.|...- ...-++.+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 3445556666665555433333322222222222222222345566777899999999988886642 1235788888
Q ss_pred HHHHHHHhcCC--------HHHHHHHHH-------HHHH------cCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Q 010807 150 KLIAVMGKKGQ--------TRLAMWLFS-------EMRN------SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 208 (500)
Q Consensus 150 ~li~~~~~~g~--------~~~A~~~~~-------~m~~------~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 208 (500)
.++-.+++.=- .+-+.+.|+ +|.. ..+.|.......++....-. ......--.++++
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~--p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV--PKERLPPLMQILE 249 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC--CHhhccHHHHHHH
Confidence 86666654311 111122222 2211 12344445555555444322 1122222222222
Q ss_pred HhhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 209 KMKGMERCKPNI-VTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 209 ~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.... .-+.|+- .+...|...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+..
T Consensus 250 ~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2221 2234542 234445555544 5555555555543332111 245788888899999999999988887765
Q ss_pred CCCCCCHHHH-------HHHHHHHhc-c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HhHHHHHH
Q 010807 284 NQCKPDIITF-------NLLIDSYGK-R---QAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARL-QGKAEYVF 348 (500)
Q Consensus 284 ~~~~~~~~~~-------~~li~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~ 348 (500)
.. |+...- ..+-+..+. - -+...-+.+|+......+.. .....-|+ .-+-+.|. -++|..++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 42 332211 122223331 1 12233344555554433321 11222222 22344454 78899999
Q ss_pred HHHHhCCCCCCHHHHHHH----HHHHhc---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCChhhHH
Q 010807 349 QKMTAMKYTPSFITYECI----ITMYGY---CDNVSRAREIFDELSKLGKDMK----VSTLNAMLEA--YCMNGLPTEAD 415 (500)
Q Consensus 349 ~~m~~~~~~~~~~~~~~l----i~~~~~---~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~ 415 (500)
+.+.+.. .-|...-|.+ -.+|.. ...+.+-..+-+-+.+.|+.|- ...-|.|..+ +..+|++.++.
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9888742 2233322222 223322 2344555555556666777653 3344444433 45679999887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
-.-.-+.+ +.|++.+|..+.-+.....++++|..+++ .++|+..++..-+.
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~-----~LP~n~~~~dskvq 533 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ-----KLPPNERMRDSKVQ 533 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH-----hCCCchhhHHHHHH
Confidence 66555554 47899999999989999999999999997 46777777655443
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.72 E-value=4.1 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=12.0
Q ss_pred HcccCCHHHHHHHHHHHHHc
Q 010807 119 LGKSDKWLQCLEVFRWMQKQ 138 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~ 138 (500)
+.+++++.+|.++|.++.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e 35 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE 35 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 34556666666666666554
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=0.96 Score=44.11 Aligned_cols=163 Identities=11% Similarity=0.125 Sum_probs=102.1
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
...++...-.++++++.+..+.-.-.+.+ +....+.++..+-+.|..+.|+.+-.+-.. - .....
T Consensus 265 ~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------r----FeLAl- 329 (443)
T PF04053_consen 265 ELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH--------R----FELAL- 329 (443)
T ss_dssp HHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------H----HHHHH-
T ss_pred HHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------H----hHHHH-
Confidence 34455555567777766665421111111 245588899999999999999888543221 1 22223
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
+.|+++.|.++-++ ..+...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+
T Consensus 330 ---~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 330 ---QLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp ---HCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred ---hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH
Confidence 67788888876443 34777999999999999999999999987642 566777788889888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877776653 34445555566888888777754
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.69 E-value=7.5 Score=41.79 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=8.0
Q ss_pred HHHHhcCChhhHHHHHH
Q 010807 403 EAYCMNGLPTEADLLFE 419 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~ 419 (500)
..||+...+++|+.+..
T Consensus 1034 ~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHhhHhHHHHHHHHHH
Confidence 33444445555554443
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.60 E-value=3 Score=36.74 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=29.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 230 CAQARNVDQVNALFKELHESIL--APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
-.+.|++++|.+.|+.+..+.+ +-...+.-.++-++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666654421 112334444455555666666666666665544
No 248
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.60 E-value=2.2 Score=35.17 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
.++++.+.+.++.++...|..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 44555666677778888888888888888775443 344455555665555444433332 223334443344332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
= ...+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-..++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 1135667778888888888888887653321 122344566666666666555555555543
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=1.1 Score=40.80 Aligned_cols=153 Identities=6% Similarity=-0.025 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHh
Q 010807 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQG 342 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 342 (500)
-.|+..+|-..++++.+. .+.|...++..=++|.-.|+.+.....++++... -.+|. ..-....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777777777777765 3447777777777888888888888888777644 12222 22233334455678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
+|+..-++..+.+ +.|.-...+....+.-.|+..++.++..+-...--.. -..-|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777754 4455555666667777888888887776544321000 01112222334455678888888887
Q ss_pred HHH
Q 010807 420 NSH 422 (500)
Q Consensus 420 ~m~ 422 (500)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 633
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=2.5 Score=34.67 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=81.2
Q ss_pred CcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 010807 108 RSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNAL 186 (500)
Q Consensus 108 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 186 (500)
+..+++.-.-.+...+..++|+.-|..+.+.+--.-.+-.--.+.......|+...|+..|++.-...-.|-.. -..-|
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34455555555666788888888888887765111112233344556778888888888888887654444332 11111
Q ss_pred HHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 187 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 187 i~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
=.+|.-. ..|.++......+.+.. ++-+--...-..|.-+-.+.|++..|.+.|.++...
T Consensus 137 raa~lLv--D~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLV--DNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHh--ccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1122111 45556666666666554 222223344456666677788888888888777654
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=3.8 Score=36.82 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
.....|++.+|..+|+...... +-+....-.+..+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666665543 222344455666666666666666666655443211111122222333444444444
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHh
Q 010807 414 ADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQN--GIVPNK--RFFLEALETFS 476 (500)
Q Consensus 414 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~~ 476 (500)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++ |..-+. .++.+++..++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332 23 5555556666666777777776665555543 333222 34455554443
No 252
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.26 E-value=3.5 Score=37.08 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-----HHhCCCCCC
Q 010807 216 CKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSR-----MKSNQCKPD 289 (500)
Q Consensus 216 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~~~ 289 (500)
-.++..+...++..+++.+++..-.++++..... +..-|...|..+|+.....|+..-...+.++ ++..++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3555556666666666667776666666665544 4555666666666666666666655555544 233445544
Q ss_pred HHHHHHHHHH
Q 010807 290 IITFNLLIDS 299 (500)
Q Consensus 290 ~~~~~~li~~ 299 (500)
...-..+-..
T Consensus 278 ~~L~~~L~~L 287 (292)
T PF13929_consen 278 DELRSQLSEL 287 (292)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=0.85 Score=40.36 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMG-VTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|..++...|++++|..+|..+.+.- -.| -+..+-.|.....+.|+.++|+.+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444555555555555554444321 011 123344444444455555555555554443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.21 E-value=1.2 Score=34.43 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCC
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANM 445 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~ 445 (500)
+....|+++.|++.|.+....- +-....||.-..++--+|+.++|++=+++..+..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666777777766666543 224666666666666667777766666666553111111 223333334555666
Q ss_pred HHHHHHHHHHHHHCC
Q 010807 446 KELVQKLLKRMEQNG 460 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g 460 (500)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.21 E-value=3.4 Score=35.81 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
+....+...+...............+......+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554432100012455555566666666666666666555432 222244445555555555555666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 277 VLSRMKSNQCKPDIITFNLLID-SYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543332 111111122 45555566666655555533211 01222233333334444555555555555544
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 354 MKYTP-SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 354 ~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.. .. ....+..+...+...++++.|...+.....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 32 11 234444444444444555555555554444
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=1.2 Score=41.61 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=94.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 374 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 374 (500)
.-.+.|.+.|++..|..-|++.+.. +. |...-+.++..... ..-..++..+..+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 3356788889999998888876542 00 11111112211111 122346778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH-HHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK-ELVQKL 452 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~-~~a~~~ 452 (500)
++..|++.-+..++.+ +.|+...-.=..+|...|+++.|+..|+++++. .|+......=+..| .+.... +...++
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 457777777789999999999999999999986 56555544444433 333333 344677
Q ss_pred HHHHHHC
Q 010807 453 LKRMEQN 459 (500)
Q Consensus 453 ~~~m~~~ 459 (500)
|..|...
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 8888754
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.16 E-value=2.8 Score=38.66 Aligned_cols=126 Identities=9% Similarity=0.024 Sum_probs=60.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCHH-HH--
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQ-----CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEKPTLP-TF-- 328 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~-- 328 (500)
+-.++...+.++++++.|+....-- .......|..|...|.+..|+++|.-+.....+ .++. |.. -|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3444445555566665555543321 111233556666666666666666554443321 1111 111 12
Q ss_pred ---HHHHHHHHhcCCHhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 329 ---NSMIINYGKARLQGKAEYVFQKMT----AMKYTPS-FITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 329 ---~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
.-|..++...|....|.+.-++.. ..|-.+. ......+.+.|-..|+.+.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122334455555555555554433 2332221 2334556667777777777776666543
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=1 Score=45.95 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 230 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
+.+.|++++|...|-+-+.. ++|. .+|.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34455555555555443321 1211 2333344444445555555555555554 444445555555555555555
Q ss_pred HHHHHH
Q 010807 310 EQVFKS 315 (500)
Q Consensus 310 ~~~~~~ 315 (500)
.++.+.
T Consensus 451 ~efI~~ 456 (933)
T KOG2114|consen 451 TEFISK 456 (933)
T ss_pred HHHHhc
Confidence 444443
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.97 E-value=4.1 Score=35.89 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
|-...|+..+..+ +.|++++|.+.|+.+...... +-...+.-.++.++.+.++++.|+..+++....-+.....
T Consensus 33 p~~~LY~~g~~~L-----~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTEL-----QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 5556677766666 778888888888888754311 1224455567778888899999999888877654433334
Q ss_pred HHHHHHHHHh
Q 010807 257 TYNGVMDAYG 266 (500)
Q Consensus 257 ~~~~ll~~~~ 266 (500)
-|..-|.+++
T Consensus 108 dY~~YlkgLs 117 (254)
T COG4105 108 DYAYYLKGLS 117 (254)
T ss_pred hHHHHHHHHH
Confidence 4555555544
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.96 E-value=1.8 Score=34.50 Aligned_cols=75 Identities=8% Similarity=0.000 Sum_probs=55.6
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
...-+.|+|++|++.|+.+..+-.+. -....--.++.+|.+.+++++|...+++.++....--..-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34446799999999999998874222 1234566789999999999999999999998644333455666666665
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.90 E-value=0.81 Score=41.11 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-----MGVTPDSSTYKL 435 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 435 (500)
.++..++..+..+|+.+.+.+.++++.... +.+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555566666666666666666666553 33555666666666666666666666655443 344454444433
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=4.9 Score=36.18 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=34.1
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (500)
+...+++.+|...|+...... +-+...--.++..|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344567777777777666653 33445556667777777777777777777654
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.21 E-value=4.1 Score=33.56 Aligned_cols=133 Identities=12% Similarity=0.153 Sum_probs=80.2
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Q 010807 131 VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 210 (500)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~ 210 (500)
.++.+.+.+ ++++...|..+++.+.+.|++.... .+...++-+|.......+-.+... ...-..-|++++.++
T Consensus 16 YirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 16 YIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh
Confidence 334444444 7788888999999999888866443 444556666666665555444321 223455666666666
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 211 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 211 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.. .+..++..+...|++-+|+++....... +......++.+..+.++...-..++.-..+
T Consensus 89 ~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 52 3456677777888888888887665322 222234456666666665555555555444
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.21 E-value=5.1 Score=34.62 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII- 333 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 333 (500)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444444445555555555544444431 112233334444444444445555555555544432221 111111111
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555433110 0122222333333444455555555555544432110234444444555555555
Q ss_pred hhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+.|...+...... .|+ ...+..+...+...|..+.+...+.+..
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554443 122 2233333333334444555554444444
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.20 E-value=3.2 Score=32.26 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhccC
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSF---ITYECIITMYGYCD 374 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~li~~~~~~~ 374 (500)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+++..+. |-+ +. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456678888888888877765 2336777888888888888888888888777763 322 22 22333344566778
Q ss_pred CHHHHHHHHHHHHHCC
Q 010807 375 NVSRAREIFDELSKLG 390 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~ 390 (500)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777766
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.04 E-value=1.3 Score=39.92 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=61.3
Q ss_pred HHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 010807 97 VRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--- 173 (500)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 173 (500)
+..++.+.+..-......+++.+...++++.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 3333344444334444556777777778888888888777765 55777788888888888888888888887765
Q ss_pred --cCCCCCHHHHHHHHHH
Q 010807 174 --SGCRPDPSVYNALITA 189 (500)
Q Consensus 174 --~g~~p~~~~~~~li~~ 189 (500)
.|+.|...+.......
T Consensus 219 edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 219 EELGIDPAPELRALYEEI 236 (280)
T ss_pred hhcCCCccHHHHHHHHHH
Confidence 4777776666554444
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=2.6 Score=38.48 Aligned_cols=154 Identities=6% Similarity=-0.081 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|++.+|-..++++.+. +|.|.-.++-.=.++..+|+.+.-...++++.-. -.+|...|..+=..|+-.-...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666666666666665 5667777777777777777777777777766532 12343333332222221112666677
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA---PDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
+|.+.-++..+.. +-|...-.+....+...|+..++.++..+-...--. .-...|=...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777766543 456666666777777777777777766543221100 00111112222344557777777777
Q ss_pred HH
Q 010807 279 SR 280 (500)
Q Consensus 279 ~~ 280 (500)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.94 E-value=3.1 Score=33.10 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 372 YCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+.|++++|.+.|+.+...-+ +.....--.|+.+|.+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555554444211 11122333444455555555555555555444
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=92.67 E-value=9.4 Score=36.90 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..+|.++-+...+.+ +-|......+..+....++++.|..+|++....++. ...+|-.....+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555666666654 446666666666666667777777777777765432 344555555556667777777777777
Q ss_pred HHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 421 SHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 421 m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
..+. .|. .......+..|+..+ .+.|..++
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 5543 232 222333344555554 34444433
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.63 E-value=4.8 Score=32.78 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=24.8
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
..++.+++..++.-+.-. .|.... -..-...+...|++++|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666555542 233211 112223344556666666666665544
No 271
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.62 E-value=3.4 Score=36.68 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCHHHH
Q 010807 304 QAFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPS-FITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-~~~~~~li~~~~~~~~~~~A 379 (500)
|++..|...|...++..+. -....+..|..++...|+++.|..+|..+.+.- -.|. ...+--|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 4455555555555443221 112233344455555555555555554444321 0111 23333444444445555555
Q ss_pred HHHHHHHHHC
Q 010807 380 REIFDELSKL 389 (500)
Q Consensus 380 ~~~~~~~~~~ 389 (500)
..+|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 272
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=1.2 Score=40.19 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.42 E-value=0.48 Score=29.03 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
..+...|...|++++|+++|+++++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 274
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.38 E-value=16 Score=38.22 Aligned_cols=223 Identities=12% Similarity=0.062 Sum_probs=123.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHH-HHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 010807 230 CAQARNVDQVNALFKELHESILAPDIY-------TYNGVMD-AYGKNGMIKEMESVLSRMKSN----QCKPDIITFNLLI 297 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li 297 (500)
.....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999998876543333221 2333322 223468889988888776653 2334566777888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCHh--HHHHHHHHHHhC-----CC-CCCHHHHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF---NSMI--INYGKARLQG--KAEYVFQKMTAM-----KY-TPSFITYE 364 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~~~~~--~a~~~~~~m~~~-----~~-~~~~~~~~ 364 (500)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +.+..+...... +. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988776554222233332 2222 2244556322 222333332221 10 12234455
Q ss_pred HHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHhCC----CCCCHHHHH
Q 010807 365 CIITMYGYCDNVSRAREI----FDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMG----VTPDSSTYK 434 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~ 434 (500)
.+..++.+ ++.+..- +.-.......|-..-+ ..|+.++...|+.++|...++++.... ..++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 56666555 3333322 2222222222222222 256778888999999999988876543 233333333
Q ss_pred HHHHH--HHHcCCHHHHHHHHHH
Q 010807 435 LLYKA--YTKANMKELVQKLLKR 455 (500)
Q Consensus 435 ~li~~--~~~~g~~~~a~~~~~~ 455 (500)
..++. ....|+.+.+...+.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33432 2457888887777665
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.37 E-value=13 Score=37.03 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+..+|..-+..-.+.|+++.+.-+|+...-. +..-...|-..+.-....|+.+-|..++....+.-++-...+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456666677777778888887777776421 111122333344444445777777777766655443322222222222
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHH---HHHHHHHhCCCCCC--HHHHHHHHH-HHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKV-STLNAMLEAYCMNGLPTEAD---LLFENSHNMGVTPD--SSTYKLLYK-AYT 441 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~--~~~~~~li~-~~~ 441 (500)
..-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.+. +++.........+. ...+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 2345689999999999988753 332 22223344455677777776 33333332211111 122222222 234
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 442 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
-.++.+.|..++.+|.+. ++++...|.++++-+...+...
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcch
Confidence 467889999999988864 5666777888887776665443
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.31 E-value=12 Score=36.51 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+..++-+.|+.++|.+.|++|.+.... -+..+...|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455666667776666666553221 133455566666666677777666666654
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=7.5 Score=33.97 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|.-...+|....++++|...+.+..+. .+-|...|. ....++.|.-+.++|.+. .--+..|+-....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 445666777888888888888877665431 221222221 122345666666666543 1123345666667
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHhccC
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K--YTPSFITYECIITMYGYCD 374 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~~ 374 (500)
|..+|..+.|-..+++.-+. ...-++++|+++|++.... + ...-...+..+-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777666555543221 1122334444444333221 0 0111223344455566666
Q ss_pred CHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCH
Q 010807 375 NVSRAREIFDELSK----LGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMG---VTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 375 ~~~~A~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~ 446 (500)
.+++|-..+.+-.. ..--++ -..|-..|-.|....++..|...++.--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 66665544433221 000111 2335555666667778888888888743322 133567788888887 56777
Q ss_pred HHHHHHH
Q 010807 447 ELVQKLL 453 (500)
Q Consensus 447 ~~a~~~~ 453 (500)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 7665543
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.15 E-value=0.62 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
+|..+...|...|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555666666666666666666554
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.12 E-value=4.6 Score=33.93 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-CHH------
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP-DII------ 291 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~------ 291 (500)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577788888888888888888888877644333 3445667777777788887777777655431111 111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.|..+ .+...+++..|-+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 11221 123456777776666554
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.91 E-value=1.8 Score=36.36 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKL 435 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ 435 (500)
..+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|......|++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345667777777777777777777776643322 2345566667777777777777766665432 11122221111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 010807 436 LYK--AYTKANMKELVQKLLKRME 457 (500)
Q Consensus 436 li~--~~~~~g~~~~a~~~~~~m~ 457 (500)
... ++...|++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 2345678888777776554
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.82 E-value=16 Score=37.13 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHc
Q 010807 125 WLQCLEVFRWMQKQRWYIADTGIYSKLI----AV-MGKKGQTRLAMWLFSEMRN-------SGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 192 (500)
...|.+.++...+.+ +...-..+. .+ +....+++.|+..|....+ .| ......-+-.+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 345777777776665 222222222 22 3455677788887777765 33 22233334444443
Q ss_pred CcchHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 010807 193 TRDKAK-ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYG---- 266 (500)
Q Consensus 193 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 266 (500)
...... +.+.|+.+|.+..... .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 221122 5566666666665422 3333322222211111 13455666666666655532 11111111111
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 010807 267 KNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~ 285 (500)
...+.+.|..++++.-+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1234555666666655555
No 282
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.74 E-value=9 Score=33.95 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=119.5
Q ss_pred cCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 010807 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHES-- 249 (500)
Q Consensus 174 ~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-- 249 (500)
.+-+||+..-|....+-. -+....++|+.-|++..+..|-+.+ ....-.++..+.+.+++++....|.+|..-
T Consensus 20 s~sEpdVDlENQYYnsK~---l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKG---LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred cCCCCCcchHhhhhcccc---ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 344666655444332221 1445677888888888765443222 223445788888899999988888887531
Q ss_pred -C--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010807 250 -I--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 250 -g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (500)
. -.-+..+.|.+++...-..+.+-..++++.-... .-+ |.. |-+-|...|...+++.+..++++++...-
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 1 1234556777777766666655554444432211 001 111 22456777888888888888888875431
Q ss_pred CC-----------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HhccCCHHHHHHH
Q 010807 321 EK-----------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITM-----YGYCDNVSRAREI 382 (500)
Q Consensus 321 ~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~-----~~~~~~~~~A~~~ 382 (500)
.. --...|..-|..|....+-.+...++++..... .-|.+.... +|+- +.+.|++++|..-
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhH
Confidence 11 123467777888888877777888888766532 234444333 3333 3456778777643
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.57 E-value=17 Score=36.94 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHHHcC--
Q 010807 161 TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACAQAR-- 234 (500)
Q Consensus 161 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g-- 234 (500)
...|.++++...+.| +...-..+..++... .....+.+.|+.+|..+... .-..-+....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 567888888888765 333333333333322 22667899999999988541 000113335566777777643
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--ccCCHHH
Q 010807 235 ---NVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG--KRQAFDK 308 (500)
Q Consensus 235 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~ 308 (500)
+.+.|..++...-+.|.. +...+-..+..... ..+...|.++|...-..|.. ....+.+++...+ -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 667799999888887654 44433333222222 34678999999999888865 3333333333222 3457889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HH---Hhc----cCCHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TM---YGY----CDNVSRAR 380 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~---~~~----~~~~~~A~ 380 (500)
|..++.+..+.|. |...--...+..+.. +..+.+...+..+.+.|... ..+-...+ .. ... ..+.+.+.
T Consensus 383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999988873 332222233344444 77888887777777766332 11111111 11 111 22456666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCC
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMG 425 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~ 425 (500)
..+......| +......|..+|... .+++.|...+......+
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 6666666655 455556666555443 24666666666655543
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.40 E-value=0.51 Score=27.38 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMR 172 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~ 172 (500)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999855
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.20 E-value=0.57 Score=27.17 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666677777777777776663
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.77 E-value=8.3 Score=31.78 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=72.0
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAM--LEAYCMNGLP 411 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 411 (500)
.+.+..++|+.-|..+.+.|...-.. .-..........|+-..|...|+++-.....|-+. -.-.| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566677777777776665332111 11223334556677777777777776644333222 11111 1234566777
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+....-.+.+-..+-+.....-..|.-+-.+.|++..|.++|+.+......|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 77766666655544333444455566666777777777777777766544443
No 287
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.71 E-value=7.2 Score=36.15 Aligned_cols=225 Identities=12% Similarity=0.010 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhCC-CCCCHHHHHHHHHHHhhcCC
Q 010807 197 AKALAKALGYFQKMKGM-ERCKPNIVTYNILLRACAQARNVDQVNALFKE----LHESI-LAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----m~~~g-~~p~~~~~~~ll~~~~~~g~ 270 (500)
..+.++|+..+.+.... .....-..+|..+..+.++.|.+++++..--- ..+.. -..-...|..+-+++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655554421 11122234566666666666666665543221 11110 00001223333333333333
Q ss_pred HHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCH
Q 010807 271 IKEMESVLSRMKSN-QCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----KPTLPTFNSMIINYGKARLQ 341 (500)
Q Consensus 271 ~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 341 (500)
+.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+.-. .....+|..|...|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 33343333332222 2222 111223344555556666666666665543211 11234566666666666666
Q ss_pred hHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHH----HHHHHHHHh
Q 010807 342 GKAEYVFQKMTA----MKYTPSFITY-----ECIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTL----NAMLEAYCM 407 (500)
Q Consensus 342 ~~a~~~~~~m~~----~~~~~~~~~~-----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----~~li~~~~~ 407 (500)
++|.-+..+..+ .++.-=..-| ..+.-++-..|++..|.+.-++..+..+. -|..++ -.+.+.|-.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 666655544332 1211111112 22233444555555555555544431110 022222 234445555
Q ss_pred cCChhhHHHHHHHH
Q 010807 408 NGLPTEADLLFENS 421 (500)
Q Consensus 408 ~g~~~~A~~~~~~m 421 (500)
.|+.+.|+.-|+..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 66666665555543
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=3.7 Score=40.59 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
..+.++..+-+.|..++|+++ .+|...--- ... +.|+++.|.++-.+.. +..-|..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal----~lgrl~iA~~la~e~~-------s~~Kw~~L 672 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LAL----KLGRLDIAFDLAVEAN-------SEVKWRQL 672 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhh----hcCcHHHHHHHHHhhc-------chHHHHHH
Confidence 456667777777777766654 222221111 111 5566777766655543 45567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
.++..+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|.. | ...-+|...|++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCH
Confidence 7777777887777777765543 345566666666666555555555555433 2 222345556777
Q ss_pred HHHHHHHHH
Q 010807 307 DKMEQVFKS 315 (500)
Q Consensus 307 ~~a~~~~~~ 315 (500)
+++.+++.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 777766654
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.59 E-value=0.0094 Score=48.33 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555555555544444445555555555555555455554444
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.55 E-value=4.2 Score=36.79 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
+.++++-++..=++.|+-||.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555444444443
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.53 E-value=18 Score=35.29 Aligned_cols=166 Identities=7% Similarity=0.094 Sum_probs=97.5
Q ss_pred cchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 010807 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA-- 185 (500)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 185 (500)
...+..++...-+..+.+.-++.-.+..+.. ||- ..|..|.. -......+|+++|++..+.|- ..+..
T Consensus 168 ~r~Aq~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s~ 238 (539)
T PF04184_consen 168 LRPAQEIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKSQ 238 (539)
T ss_pred cCHHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchhh
Confidence 3456677777777777777776666666542 332 22322222 234557888899888776431 01100
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 010807 186 LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-PDIYTYNGVMDA 264 (500)
Q Consensus 186 li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~ 264 (500)
... ..| ..++.... ....+-..+-..+...+.+.|+.++|++.|.+|.+.... -+......|+.+
T Consensus 239 ~~~-------~~g------~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 239 FLQ-------HHG------HFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hhh-------ccc------chhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 000 000 01111111 112223334455777778889999999999999765432 244577889999
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLI 297 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li 297 (500)
+...+.+.++..++.+..+...+ .-..+|+..+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999999999998654332 2344566544
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=90.45 E-value=18 Score=35.09 Aligned_cols=80 Identities=8% Similarity=-0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
.+|.+..++..+.+.. |......+..+....++++.|...|++....++. ...+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555554433 5555555555555555566666666665553222 3344444444445556666666666654
Q ss_pred Hh
Q 010807 352 TA 353 (500)
Q Consensus 352 ~~ 353 (500)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 44
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.96 E-value=8.8 Score=30.78 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=21.6
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
.++.+++..++..|.-. .|+.. .-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555442 22211 1111222334455555555555555544
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.92 E-value=17 Score=32.73 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRFF 468 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 468 (500)
.+++.....|..+|.+.+|.++-++..... +.+...+..|++.++..||--.+.+.+++|.+ .|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345566678899999999999999988765 56788889999999999998888888888764 3777766543
No 295
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.64 E-value=18 Score=32.66 Aligned_cols=119 Identities=10% Similarity=0.081 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKELHE-SILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
....+.+|+.+|+.......+-.|..+...+++......+ ...-.++.+-+.. .|-.++..+...++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 4555777777777443212345566666666666655222 2222223333322 234556666666777777777777
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 273 EMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFK 314 (500)
Q Consensus 273 ~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (500)
+..++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777776665554 444566667777777777777665555544
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.43 E-value=0.66 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHhcCChhhH
Q 010807 394 KVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A 414 (500)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444445554544444
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.26 E-value=23 Score=33.43 Aligned_cols=66 Identities=12% Similarity=-0.058 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
....+|..+...+.+.|.++.|...+..+...+... +....-.-....-..|+-++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999998888754211 333444455666678888999998888877
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.76 E-value=37 Score=35.14 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C-----------hhhHHHHHHHHHhCC-----C-
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-L-----------PTEADLLFENSHNMG-----V- 426 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~-----------~~~A~~~~~~m~~~~-----~- 426 (500)
....-+...|++++|..+|....+.+ .-....|.++.-..... . ...|..+.+.....+ +
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 33445667888888888887666432 11334444443333222 2 233444444433321 1
Q ss_pred CCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 427 TPDSSTYKLLYKA-----YTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 427 ~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
..+..|+..|++. +.+.|++++|++.++ +.++.|..
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~---~L~liP~~ 537 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIE---KLDLIPLD 537 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HTT-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hCCCCCCC
Confidence 1234566666553 367899999987665 44677743
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.73 E-value=1.7 Score=25.85 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 344555555555555555555555443
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.61 E-value=1 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAM 165 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~ 165 (500)
+.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 668889999999999999999886
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.55 E-value=1.7 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 398 LNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
|..+..+|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444443
No 302
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.21 E-value=3.1 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 440 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
..+.|-..++..++++|.+.|+..+...|..+++.+
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346777778888888888888888888888877654
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.20 E-value=0.24 Score=40.04 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
+..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444444444444455544443333344555555555555544444444444
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.10 E-value=5.8 Score=34.00 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKA 439 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 439 (500)
|.+..++.+.+.+.+++|+...++-.+.. +-|...-..++..||-.|++++|..-++-.-.. ...+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999999998777764 346777788999999999999998766654432 234556777777765
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.70 E-value=2 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 398 LNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
|..+..+|...|++++|++.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.63 E-value=85 Score=37.23 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=90.0
Q ss_pred ccCCHHHHHHHHHHH----HHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 121 KSDKWLQCLEVFRWM----QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
+.+.|.+|+-.++.- .++ ......|..+...|+..+++|...-+...-. -+...+..++... .
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~---~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~e-----~ 1461 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEK---ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEHE-----A 1461 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHHH-----h
Confidence 456778888888772 222 1123446666669999999998887776422 2334444444433 6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG-VMDAYGKNGMIKEME 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~ 275 (500)
.|++..|...|+.+.+.+ ++...+++-++......|.++.++-..+-.... ..+....+++ =+.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 788999999999998643 444677887887777788888777755544432 1222223332 234445677777777
Q ss_pred HHHH
Q 010807 276 SVLS 279 (500)
Q Consensus 276 ~~~~ 279 (500)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 7665
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.57 E-value=10 Score=32.20 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A 414 (500)
+|+..+..|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444443
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.29 E-value=52 Score=34.45 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.|.+.|++++|...|-..... ..| ..+|.-|.....+.+-..+++.+.+.|+.-. ..-..|+.+|. +.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYi----Kl 444 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYI----KL 444 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHH----Hh
Confidence 345568888888777554432 222 2355556666667777777888887776543 33456777887 55
Q ss_pred HHHHHHHHHHHHhh
Q 010807 198 KALAKALGYFQKMK 211 (500)
Q Consensus 198 ~~~~~a~~~~~~~~ 211 (500)
++.++..++.+...
T Consensus 445 kd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD 458 (933)
T ss_pred cchHHHHHHHhcCC
Confidence 55666655555544
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.26 E-value=10 Score=27.73 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
++.+-++.+....+.|++.....-++||.+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665444
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.98 E-value=2.7 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666553
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.94 E-value=3.1 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788888899999999999999888774
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.90 E-value=14 Score=27.46 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+...-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666776666777777766666654
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.47 E-value=21 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=9.5
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 010807 405 YCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~ 423 (500)
+...|++.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.22 E-value=26 Score=30.17 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|-..-|.--|.+..... +.-+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 344444444455544321 22356778787778888888888888888777654433333333332 334577777776
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 277 VLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 277 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
-+...-+.+.. |-...|--++. ..-++.+|.. +.++... .|..-|..-|..|.-..-.+ ..+++.+.+.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE--ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH--HHHHHHHHhh
Confidence 66665554322 22222322221 2234444433 2333322 23333433333332211111 1222333221
Q ss_pred CCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 355 KYTP-------SFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 355 ~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
. .- -..||--+..-+...|++++|..+|+-.+..
T Consensus 226 a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 A-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 11 1345555666666667777777776665553
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.98 E-value=39 Score=31.91 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
...++..+...+.+.|.++.|...+..+...+... +....-.-....-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667777788888888888888888877643211 222233334455566777888888777765
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.58 E-value=2.5 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455555555555555555555433
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.45 E-value=3.9 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
..|..+...+.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888764
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.67 E-value=52 Score=32.40 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|-...-+++..+..+..+.-+..+-.+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3344445555555555555555555555555543 2445555556655555 445555566655555433 33333444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSMIINYGKARLQGKAEYVFQKMTA-MKYTPSFITYECIITMY 370 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 370 (500)
...|.+ ++...+..+|.+....-++. -...|..++..- ..+.+....+...+.. .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444433 55555555555544331110 011233332211 2233444444444433 12222233334444445
Q ss_pred hccCCHHHHHHHHHHHHHCC
Q 010807 371 GYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~ 390 (500)
....++++|++++..+.+.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 55555555555555555543
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=65 Score=33.45 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=82.8
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
++-+-+.+.+++|+++.+..........-...+...|..+.-.|++++|-.+.-.|.. -+...|...+.-+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~---- 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA---- 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc----
Confidence 4555566888999888777554321111346788899999999999999888888764 24444444444333
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------hCCCCCCHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-----------------ESILAPDIYTY 258 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----------------~~g~~p~~~~~ 258 (500)
..+. -..++.-++. .....+...|..++..+.. .+...-.++..+.. +..-+ +...-
T Consensus 435 e~~~---l~~Ia~~lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~ 508 (846)
T KOG2066|consen 435 ELDQ---LTDIAPYLPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALL 508 (846)
T ss_pred cccc---cchhhccCCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHH
Confidence 1111 1222222222 1112345567777776666 23222222221110 00011 11222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMK 282 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~ 282 (500)
..|...|...+++++|+.++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336667777788888877776655
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.88 E-value=39 Score=33.88 Aligned_cols=104 Identities=21% Similarity=0.134 Sum_probs=76.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010807 152 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231 (500)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (500)
.....+.|+.+.|.++..+. -+..-|..|-.+.. ..+++..|.+.|.+... |..|+-.+.
T Consensus 644 Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al----~~~~l~lA~EC~~~a~d----------~~~LlLl~t 703 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL----SAGELPLASECFLRARD----------LGSLLLLYT 703 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh----hcccchhHHHHHHhhcc----------hhhhhhhhh
Confidence 34556778888888776654 36678888888888 77789999998888764 456777788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 281 (500)
..|+-+....+-....+.|.. |....+|...|+++++.+++.+-
T Consensus 704 ~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 888887777777777766643 34455677789999998887654
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.56 E-value=36 Score=29.79 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
|..|...|++..|-+...++-+. ...+..-+..-|..|.+.+++-...+.-. .-...+--+...-+..+++
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~s--------sANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVS--------SANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhh--------hHHHHHHHHHHHHHHHHHH
Confidence 44566667776665554443321 22233444444444433333222111110 1111222233334567888
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 010807 377 SRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~ 395 (500)
.+|+++|+++....+..+.
T Consensus 171 ~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 9999999988876554333
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.53 E-value=76 Score=33.57 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=120.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---CCCCCCHHHH
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDP-------SVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ERCKPNIVTY 223 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 223 (500)
......++++|..++.++...-..|+. ..++.+-.-... ..|+.++|.++-+..... ....+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val---~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL---NRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 345678899999999887654222222 134433322222 345566666665554321 2345567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHhhcCCH--HHHHHHHHHHHhC-----CC-CCCH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM-----DAYGKNGMI--KEMESVLSRMKSN-----QC-KPDI 290 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~g~~--~~a~~~~~~m~~~-----~~-~~~~ 290 (500)
.++..+..-.|++++|..+..+..+.--..+...+.... ..+...|+. .+.+..+...... .. .+-.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 888889999999999998887766543333444443332 234556632 2333333333221 11 1123
Q ss_pred HHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCHHHH
Q 010807 291 ITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPT--FNSMIINYGKARLQGKAEYVFQKMTAMKYT----PSFITY 363 (500)
Q Consensus 291 ~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~ 363 (500)
.++..+..++.+. +...++..-+.--......+-... +..|+..+...|+.++|...+.++...... ++..+.
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 3445555555551 111222222222222222222222 236677788899999999988887664322 232222
Q ss_pred HHHH--HHHhccCCHHHHHHHHHH
Q 010807 364 ECII--TMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 364 ~~li--~~~~~~~~~~~A~~~~~~ 385 (500)
...+ ......|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 2223 234557787777766554
No 323
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=48 Score=30.53 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----CCCCCC
Q 010807 215 RCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKPD 289 (500)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~ 289 (500)
.++.|...++.|... +...+++-.+..++..+. |-.--...+......||+.|+.+.|++.+.+..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345555555555433 122233333333333332 1111224455556678888888888777765443 466777
Q ss_pred HHHHHHHH-HHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 290 IITFNLLI-DSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 290 ~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
+..+..=+ -.|....-..+-++..+.+.+.|...+. .+|..+- |....++.+|..+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 76665433 3344444445555555666666654332 2343322 3345677888877766554
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.36 E-value=59 Score=31.69 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
.|...--..-|.--. ..|++-.|-+-+.... ...+.++.........+...|+++.+.+.+....+. +.....
T Consensus 286 ~~~~~~~~~si~k~~----~~gd~~aas~~~~~~l--r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~ 358 (831)
T PRK15180 286 QDQIREITLSITKQL----ADGDIIAASQQLFAAL--RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDS 358 (831)
T ss_pred CcchhHHHHHHHHHh----hccCHHHHHHHHHHHH--HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCch
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
+...++....+.|++++|..+-.-|....+. +...........-..|-++++...|+++...+.+.+....|.+-..-.
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 401 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (500)
-..--.-.+....-++.. ..+.......+....+..+----...++++....-.....+...+
T Consensus 438 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (831)
T PRK15180 438 FNDGNAFSEAFHAGIQSQ--RLNDTFMETALSLAIKFSDELIFMHALEQLLRHESEFALTVLSTI 500 (831)
T ss_pred ccCcchHHHHHHhhhhhh--hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhHHHHHHhhh
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.21 E-value=5.6 Score=36.45 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|+.-....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34456666666666666655443 23 5555655556666666666555444443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.27 E-value=83 Score=32.62 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=38.7
Q ss_pred HhcCChhhHHHHHHHHHhCCC-CC-----CHHHHHHHHH--HHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGV-TP-----DSSTYKLLYK--AYTKANMKELVQKLLK--------RMEQNGIVPNKRFF 468 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~-~p-----~~~~~~~li~--~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~ 468 (500)
+-.+++..|...+..|....- .| ....+..++. .+-..|+.+.|...|. .....+...+..++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 457889999999998876321 11 1223333333 3456799999999997 44444555444443
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.79 E-value=7.2 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666677777777777666553
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.64 E-value=40 Score=28.58 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=40.7
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITY-----ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-----~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
.+...+++++|..-++..... |....+ -.|.+.....|.+|+|+.+++.....++ .......-.+.+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 344555555555555554432 111111 2233344455555555555555544432 122233334455555
Q ss_pred CChhhHHHHHHHHHhC
Q 010807 409 GLPTEADLLFENSHNM 424 (500)
Q Consensus 409 g~~~~A~~~~~~m~~~ 424 (500)
|+-++|..-|++....
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 5555555555555554
No 329
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.47 E-value=78 Score=31.81 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=97.8
Q ss_pred cchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
.+....++.......+.+.+..+++.+... +|.--.-|......=.+.|..+.+.++|++-+. |++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 333445565555555666677777777765 455556688888888899999999999999875 46677778887777
Q ss_pred HHHcCcchHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 189 AHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.+.. ..|+.+...+.|+......|.. .....|...|..-...+++.....+|+..++.
T Consensus 122 f~~n---~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKN---NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhc---cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6664 4456666788888877654432 34557888888888889999999999998875
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.45 E-value=38 Score=28.28 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHccCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHcCc-
Q 010807 125 WLQCLEVFRWMQKQRWYIADTGI---YSKLIAVMGKKGQTRLAMWLFSEMRNS-----GCRPDP-SVYNALITAHLHTR- 194 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-~~~~~li~~~~~~~- 194 (500)
|+.|.+.++.-.... +.|... |...+.-+++.....++.+++++.... .+.|+. .++.++-.+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 445555555544443 444443 444555555555545555555444321 234553 44444444444211
Q ss_pred ------chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 195 ------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 195 ------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
+....+++|.+.|++.... .|+...|+.-+.... +|-+++.++.+++
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 0123355666666665542 566666666666542 3555555555544
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.27 E-value=44 Score=28.88 Aligned_cols=161 Identities=15% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIIT 368 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~ 368 (500)
...||-+.-.+...|+++.|.+.|+...+..+.-+-...|--| ++.-.|++.-|.+-+...-+.. -.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 4567777777777888888888888777654432322222222 2334566776665554444432 122222222222
Q ss_pred HHhccCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-------CHHHHHHHHHHH
Q 010807 369 MYGYCDNVSRARE-IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-------DSSTYKLLYKAY 440 (500)
Q Consensus 369 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------~~~~~~~li~~~ 440 (500)
...-+..+|.. +.++.... |..-|...|-.|.-..-.+ ..+++.+.... .. =..||-.|.+-+
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--ETLMERLKADA-TDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH--HHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHH
Confidence 12334445543 33333332 3444554444433211111 12233322211 11 145777788888
Q ss_pred HHcCCHHHHHHHHHHHHHCCC
Q 010807 441 TKANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~g~ 461 (500)
...|+.++|..+|+-....++
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 888888888888887776543
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.29 E-value=44 Score=28.34 Aligned_cols=131 Identities=8% Similarity=-0.001 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE--CIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAM 401 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l 401 (500)
..|..++.... .+.. +.....+.+....-.....++. .+...+..++++++|..-++........-+ ..+--.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34555555443 2333 4444455555532122222222 334567889999999999987775321111 2223345
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.......|.+++|+.+++...+.+. .......-.+.+...|+.++|..-|++..+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 6677889999999999998776543 23334445668999999999999999999886
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.28 E-value=26 Score=25.75 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
.-++..-++.+....+.|+.....+.+++|-+.+|+..|.++|+.++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666666555
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.22 E-value=33 Score=30.82 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY--- 370 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--- 370 (500)
..=|.++...+++.++....-+--+.--+........-|-.|.+.+.+..+.++-..-....-.-+...|..++..|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34466777778887776655443332222334455555666778888877777766655532122233355555544
Q ss_pred --hccCCHHHHHHHH
Q 010807 371 --GYCDNVSRAREIF 383 (500)
Q Consensus 371 --~~~~~~~~A~~~~ 383 (500)
.=.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 3457788887776
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.12 E-value=7.7 Score=21.62 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
.+|..+...+...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778888899999999999999888763
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.48 E-value=40 Score=28.73 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=39.4
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
.++|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 445555555555555554321111 1223333344555555555555555544433 11112222223345555555
Q ss_pred HHHHHHHHHHHHC
Q 010807 377 SRAREIFDELSKL 389 (500)
Q Consensus 377 ~~A~~~~~~~~~~ 389 (500)
+.|++-|..+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
No 337
>PRK09687 putative lyase; Provisional
Probab=75.52 E-value=65 Score=29.44 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH----HHHHHHHHHHHhCCCCCCHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI----KEMESVLSRMKSNQCKPDIIT 292 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~ 292 (500)
.+|..+....+.++...|..+ +...+..+... +|...-...+.++.+.|+. +++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 456667777777777777543 33334444332 3666666677777777763 5677777776444 345555
Q ss_pred HHHHHHHHhccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 293 FNLLIDSYGKRQAF-----DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 293 ~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
-...+.+++..+.. ..+...+.... ..++..+-...+.++++.++ +.+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 55555555554321 23333333332 23366666677778888776 456666666665 34555555566
Q ss_pred HHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 368 TMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 368 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
.++.+.+ +...+...+..+... ++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666543 234566666666643 467778888888888887 56776666666543 2 245677888888885
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010807 447 ELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477 (500)
Q Consensus 447 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 477 (500)
+|...+..+.+. .||..+-...+.++.+
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 688888888763 3477777777777643
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.05 E-value=1.1e+02 Score=31.78 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLH 192 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~ 192 (500)
..|..+.-.|+|+.|++.+-.. .....++..+...+..|.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 3455555568888888776551 112334444444433332221111111 2222110 01122556777888876
Q ss_pred CcchHHHHHHHHHHHHHhhc
Q 010807 193 TRDKAKALAKALGYFQKMKG 212 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~ 212 (500)
.- ...+...|+++|--+..
T Consensus 337 ~F-~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 337 SF-EITDPREALQYLYLICL 355 (613)
T ss_dssp TT-TTT-HHHHHHHHHGGGG
T ss_pred HH-hccCHHHHHHHHHHHHH
Confidence 55 56677888888877775
No 339
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.72 E-value=32 Score=25.57 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+..+-++.+....+.|++......+++|.+.+++..|.++|+-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666666666665543
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.50 E-value=4.8 Score=22.22 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=6.2
Q ss_pred HhcCChhhHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENS 421 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m 421 (500)
.+.|++++|.+.|+++
T Consensus 11 ~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 3333334443333333
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.33 E-value=6.8 Score=21.56 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 149 SKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 149 ~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555666677777777777777654
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.05 E-value=49 Score=29.81 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 186 LITAHLHTRDKAKALAKALGYFQKMKG-MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 186 li~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
-|.+++ ..+++.+++.+.-+--+ ...++|.+.-. -|-.|.+.+++..+.++-.......-.-+...|.++...
T Consensus 89 GIQALA----EmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 89 GIQALA----EMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hHHHHH----HHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 366666 56666666555433322 12234433322 233466666666666666655543322233335544444
Q ss_pred Hhh-----cCCHHHHHHHH
Q 010807 265 YGK-----NGMIKEMESVL 278 (500)
Q Consensus 265 ~~~-----~g~~~~a~~~~ 278 (500)
|.. .|.+++|+++.
T Consensus 163 yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 163 YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhccccHHHHHHHH
Confidence 332 45555555544
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.41 E-value=8.5 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010807 150 KLIAVMGKKGQTRLAMWLFSEMRNSG 175 (500)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g 175 (500)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36778889999999999999888644
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.16 E-value=5.6 Score=20.90 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 010807 435 LLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 435 ~li~~~~~~g~~~~a~~~~~ 454 (500)
.+..++...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.32 E-value=61 Score=27.67 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010807 229 ACAQARNVDQVNALFKELHESILAPD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 304 (500)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 304 (500)
-+.+.|++++|..-|.+.+..-.... ...|..-..++.+.+.++.|+.--.+..+.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 34567777777777777665422111 122333344556666666666666665554322 1111122234566666
Q ss_pred CHHHHHHHHHHHHhC
Q 010807 305 AFDKMEQVFKSLMHS 319 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~ 319 (500)
+++.|+.-|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 346
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.89 E-value=11 Score=34.17 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 427 TPDSST-YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 427 ~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
.||..+ |+.-|....+.||+++|+.++++.++.|+.--..+|...++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 345444 34666777777777777777777777777766666665543
No 347
>PRK09687 putative lyase; Provisional
Probab=71.75 E-value=81 Score=28.83 Aligned_cols=202 Identities=10% Similarity=-0.016 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-----HHHHHHHHHHHHhCCCCC
Q 010807 218 PNIVTYNILLRACAQARNV----DQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-----IKEMESVLSRMKSNQCKP 288 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~~~~ 288 (500)
+|...-...+.++...|+. +++...+..+... .++...-...+.++...+. ...+...+...... +
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---K 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---C
Confidence 3445555555555555542 3455555555322 2344444444444444332 12233333333322 2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
+..+-...+.++++.++ +.++..+-.+... ++...-...+.++++.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444556666666665 3455555555542 34445555555565543 23455555555554 35666667777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.++.+.++. .|...+-...+.+ + ..-..+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 777777773 4555555555443 2 234566777777774 677777777764 34666555555554
No 348
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.46 E-value=89 Score=28.36 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH----ESILA 252 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~ 252 (500)
+-|...+|.++.- ...++++--+-+++..+..|-.--...+-.+...|++.++.+.+.++..+.. ..|.+
T Consensus 78 kfD~~~~n~l~kk------neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K 151 (412)
T COG5187 78 KFDRGRMNTLLKK------NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK 151 (412)
T ss_pred ehhhHHHHHHHHh------hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc
Confidence 4455566666542 2333333333334444333334456678888899999999988888776654 34666
Q ss_pred CCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 253 PDIYTYNG-VMDAYGKNGMIKEMESVLSRMKSNQCKPDI----ITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 253 p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.|+..... |.-.|....-.++-++..+.|.++|..-+. -+|..+- +....++.+|-.++.+....
T Consensus 152 iDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 152 IDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 66543322 222344444467778888888888764221 1232221 12235677777777666543
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.51 E-value=89 Score=28.01 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHhC---CC-
Q 010807 215 RCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI---YTYNGVMDAYGKNGMIKEMESVLSRMKSN---QC- 286 (500)
Q Consensus 215 ~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~- 286 (500)
+-.||+..=|..-+. -.+..++++|+.-|++..+...+-.. .....++..+.+.|++++..+.+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 446666544332221 12345788999999888765433333 34556788888999999988888887531 11
Q ss_pred -CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC---
Q 010807 287 -KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----K-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--- 357 (500)
Q Consensus 287 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--- 357 (500)
.-+..+.|++++......+.+--.++|+.-++. . -..=-.|-+.|...|...+.+.+...+++++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 124456677777777667777666666644321 1 1111124456777777778888888887777543111
Q ss_pred --------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH----HHhcCChhhHHH
Q 010807 358 --------PSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMKVSTLNAMLEA----YCMNGLPTEADL 416 (500)
Q Consensus 358 --------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~----~~~~g~~~~A~~ 416 (500)
.-...|..=|.+|....+-.+-..+|++... ..--|.+.+...+-.| ..+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1134577777788777777777778876654 2223444444333222 345677777743
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.04 E-value=97 Score=28.24 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 386 (500)
.....|...|.+.+|.++.+..+... +.+...+-.++..+...||--.|..-++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33344555555555555555555443 344455555555555555544444444433
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.93 E-value=1.8e+02 Score=31.34 Aligned_cols=196 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCH--HHHHHHHHHHHhCCCCCCHHHHHH--
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKS---NQCKPDIITFNLLIDSYGKRQAF--DKMEQVFKSLMHSKEKPTLPTFNS-- 330 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 330 (500)
|..|+..|...|+.++|+++|.+... ..-.--...+.-++....+.+.. +-++++-+-..+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-----------------HHHHHHHH
Q 010807 331 ----------MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-----------------VSRAREIF 383 (500)
Q Consensus 331 ----------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 383 (500)
.+-.|......+-+..+++.+....-.++....+.++..|+..=+ -+......
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred HHHHHCCC------CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 384 DELSKLGK------DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 384 ~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+.-....+ -+....|....-.+.+.|+.++|+.++-..+ ++++.|..+....-
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L---------------------~d~~~A~~Yc~~~y 725 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL---------------------DDIDAAESYCLPQY 725 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh---------------------cchhHHHHHHHHhc
Q ss_pred HCCCCCCHHHHHHHHHHH
Q 010807 458 QNGIVPNKRFFLEALETF 475 (500)
Q Consensus 458 ~~g~~p~~~~~~~ll~~~ 475 (500)
+ ...++...|..+++.+
T Consensus 726 ~-~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 726 E-SDKTNKEIYLTLLRIY 742 (877)
T ss_pred c-CCCcccHHHHHHHHHH
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.57 E-value=32 Score=34.31 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
.|+..+...++.-+... .-...+-+-.+|..|.. .+.|--...|...-.+.-.|+...|...+.........-..+
T Consensus 568 ~~~~~~~k~~~~r~~~~--~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNY--TIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred CchHHHHHHHHHHHhcc--cCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 36666666666554422 22334556666766763 123332233333333344688888888887765543333334
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 334 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (500)
....|.+...+.|...+|..++.+...... ...-++-.+.++|....+++.|++.|++..+.... +...-+.|...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 455666677777788888888887766542 25556778888899999999999999988876433 55555555443
No 353
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.56 E-value=1e+02 Score=28.27 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCChhhH
Q 010807 395 VSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A 414 (500)
...|.-|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 44556666666666665544
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.51 E-value=38 Score=32.99 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhhcCCH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGMI 271 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~ 271 (500)
..|..+-+..+++ .|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 11 ~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 11 LFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4555655444443 234444322 234455556667765 334444556555432 122344455566776
Q ss_pred HHHHHHHH
Q 010807 272 KEMESVLS 279 (500)
Q Consensus 272 ~~a~~~~~ 279 (500)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 66555443
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.35 E-value=68 Score=25.89 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 373 CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.++.+++..+++.|.-..++ +...++. ...+...|++++|+.+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443221 1122222 22344555555555555555544
No 356
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.34 E-value=26 Score=21.90 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 152 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
+....+.|-.+++..+++.|.+.|+..+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344566777788888888888888777777776654
No 357
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.28 E-value=47 Score=23.94 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|...-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 44556666666544 33334444333335566667777666665 332 2455666666666554444
No 358
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.33 E-value=50 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHccCCCCC-H------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 125 WLQCLEVFRWMQKQRWYIAD-T------GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.+.|+.+++.+.+... .|. . ..--..+.+|.+.|.+++|.+++++... .|+......-+...+
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHH
Confidence 5778888888877642 111 1 1233455679999999999999999886 455555444444443
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.46 E-value=91 Score=26.68 Aligned_cols=79 Identities=13% Similarity=0.084 Sum_probs=44.2
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKPTLPTFNSMIINYGKARLQ 341 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~ 341 (500)
+.+.|+ ++|.+.|-++...+.--++.....|...|. ..+.++++.++....+. +-.+|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 556666666665554445555555554444 45666666666655432 2245666666666666666666
Q ss_pred hHHH
Q 010807 342 GKAE 345 (500)
Q Consensus 342 ~~a~ 345 (500)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6553
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.42 E-value=25 Score=24.68 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=26.0
Q ss_pred hcCChhhHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTP-D-SSTYKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~~li~~~~~~g~~~~a~~~ 452 (500)
...+.++|+..|....+.-..+ + -.++..++.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665542222 1 23555666677777776666554
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.33 E-value=1.9e+02 Score=30.25 Aligned_cols=48 Identities=6% Similarity=-0.169 Sum_probs=26.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 383 (500)
..+...|....|...+..+... .+......+.......|..+.+....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445566777777777666653 23334444445555566666665544
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.23 E-value=58 Score=25.35 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+....++.+....+.|+......-+++|-+.+|+..|.++|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666554
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.38 E-value=1.2e+02 Score=27.70 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCC
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKE 321 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~ 321 (500)
.|...+.+.-..+ +......+...|.. ..+..+|...|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666655554 22333333333322 3356666666666655543
No 364
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.85 E-value=95 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=13.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+++..|-+..++.++.++++.|.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666554
No 365
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.59 E-value=65 Score=27.05 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=42.0
Q ss_pred ccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHcc
Q 010807 74 SEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQR 139 (500)
Q Consensus 74 ~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~ 139 (500)
-|...|..+++.|-+..+.++.+...+....+. ..+-.|-+.|.|++|.+++++..+..
T Consensus 83 TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~-------~aV~VCm~~g~Fk~A~eiLkr~~~d~ 141 (200)
T cd00280 83 TPLESALMVLESIEKEFSLPETLHEEIRKLIKE-------QAVAVCMENGEFKKAEEVLKRLFSDP 141 (200)
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHhcCchHHHHHHHHHHhcCC
Confidence 456677888888877666655566555544432 34556778899999999999998743
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.36 E-value=62 Score=24.06 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=23.9
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
.+.+.|++++|..+.+.+ .-||...|-+| +-.+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 344555555555554433 23455554433 2234444454444444454444
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.01 E-value=48 Score=30.72 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=65.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
--.+-|.+.|.+++|++.|..-+.. .| +.+++..-..+|.+...+..|+.-.......+ ..-...|+.-+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 3456788899999999999887764 34 78888888889999888887777666665532 12234555555555566
Q ss_pred CCHHHHHHHHHHHHHCC
Q 010807 374 DNVSRAREIFDELSKLG 390 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~ 390 (500)
|...+|.+-++...+..
T Consensus 179 g~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALE 195 (536)
T ss_pred hhHHHHHHhHHHHHhhC
Confidence 77777777777776643
No 368
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=61.57 E-value=95 Score=34.01 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 010807 226 LLRACAQARNVDQVNALFKE 245 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~ 245 (500)
.++-+...+++.+|..+.+.
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 44556677788777766543
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.42 E-value=31 Score=22.97 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010807 125 WLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (500)
.+...++++.++.. ..|-.-.-.+|.+|...|++++|.+.++++.+
T Consensus 6 ~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666553 23555567788999999999999999888765
No 370
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.66 E-value=1.8e+02 Score=28.87 Aligned_cols=180 Identities=12% Similarity=0.051 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
..|.....+++..+. ......-...+-.+|... ..+-..|..++..|..+ ..+.-..+++++.+..+. |++
T Consensus 63 ~l~d~~l~~~~~~f~----~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFG----DNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVV 133 (711)
T ss_pred cccchHHHHHHHHhc----cchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHH
Confidence 346667777888777 566677777788888763 45778899999999988 567788899988887655 555
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-----PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLPTFNS 330 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 330 (500)
.-..|...|-+ ++.+.+...|.+....=++ .=...|.-|...- ..+.+....+...+... |...-...+.-
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 55555555544 8888888888887654221 1122455554422 35777777777777643 44445566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
+-.-|....++.+|.+++..+.+.. .-|...-..++..
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 7788889999999999999988865 3344444444443
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.55 E-value=88 Score=25.19 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGL-PTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
.++++......+++.....+++.+..... ..+...|+.++.+..+..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666665666666666666555522100 1133445555555533333 22234444444444445555555555
Q ss_pred HHHHHH
Q 010807 437 YKAYTK 442 (500)
Q Consensus 437 i~~~~~ 442 (500)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554433
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.29 E-value=21 Score=23.83 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.01 E-value=69 Score=23.82 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
.++|..+-+-+...+-. ...+--+-+..+.+.|+|++|..+.+.+. .||...|..|-. .+.|..+.+..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45666666555544311 22222233456788999999999988763 788888877643 477888888888888
Q ss_pred HHHCCCCCCHHHH
Q 010807 456 MEQNGIVPNKRFF 468 (500)
Q Consensus 456 m~~~g~~p~~~~~ 468 (500)
|...|- |....|
T Consensus 94 la~sg~-p~lq~F 105 (115)
T TIGR02508 94 LAASGD-PRLQTF 105 (115)
T ss_pred HHhCCC-HHHHHH
Confidence 887773 333333
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.58 E-value=17 Score=18.97 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
..+...+...|++++|...+...+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444433
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.50 E-value=83 Score=24.55 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..+-++.....++.|++.....-+++|.+.+|+..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455555566666666666666666666666666655543
No 376
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=2.3e+02 Score=29.57 Aligned_cols=197 Identities=9% Similarity=0.037 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHH
Q 010807 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALAKALG 205 (500)
Q Consensus 127 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~ 205 (500)
+.+...+.+.+...++.....--.+-.+|...|++++|++.--..- .-.+.++...+.+++.-|.. .-.+.+.+
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id-----~yi~~~~~ 115 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCID-----MYIETASE 115 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHH-----HHHHHHHH
Confidence 3444555555554333222222334467888899998887644432 23466777788887776652 23555666
Q ss_pred HHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH---------HHH-HhCCCCCCHHHHHHHHHHHhhcCC-HHH
Q 010807 206 YFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALF---------KEL-HESILAPDIYTYNGVMDAYGKNGM-IKE 273 (500)
Q Consensus 206 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~---------~~m-~~~g~~p~~~~~~~ll~~~~~~g~-~~~ 273 (500)
.++.-.+..++.+. ....+.++..|...+++..|+-+. ++. .+..-. ....+.++..+....+ -+-
T Consensus 116 ~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~--~~~~~yll~l~~s~v~~~ef 193 (929)
T KOG2062|consen 116 TYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSV--IGNLTYLLELLISLVNNREF 193 (929)
T ss_pred HhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccccc--chHHHHHHHHHHHHHhhHHH
Confidence 66543322223332 235677777787777777666543 221 112112 2233344444333322 233
Q ss_pred HHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 274 MESVLSRMKS---NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 274 a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
-.+++..+.+ ....|| |..+..+|.-..+.+.|.++++++.+.. .....|......|
T Consensus 194 R~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~ 253 (929)
T KOG2062|consen 194 RNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLY 253 (929)
T ss_pred HHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHh
Confidence 3334443333 344555 5667788889999999999999997732 1234444444444
No 377
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=58.24 E-value=1.4e+02 Score=26.85 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 225 ILLRACAQARNVDQVNALFKELHESI-LAP-----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
.|+.-|.+.|+++.|-.++--+...+ ... +...-..++......++++-+.++.+-+...+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 46666777777777766655554332 222 33445567778888999999999988877653
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.07 E-value=1.6e+02 Score=27.50 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhhHHHHH
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN---GLPTEADLLF 418 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~ 418 (500)
+.-+.++++.++.+ +-+......++..+.+..+.++..+-|+++..... -+...|...+...... -.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556677766663 34566667777777777777777777777777542 2577777777665542 2355555555
Q ss_pred HHHHh------CCC------CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH------HHHHHHHH
Q 010807 419 ENSHN------MGV------TP--D---SSTYKLLYKAYTKANMKELVQKLLKRMEQNGI-VPNKR------FFLEALET 474 (500)
Q Consensus 419 ~~m~~------~~~------~p--~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~------~~~~ll~~ 474 (500)
.+... .+. .+ + ...|..+...+.+.|..+.|..+++-+.+.++ .|... .....++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~ 205 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEE 205 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 54332 111 01 1 12233333345679999999999999998865 34431 34456666
Q ss_pred HhcCC
Q 010807 475 FSSSL 479 (500)
Q Consensus 475 ~~~~g 479 (500)
|..++
T Consensus 206 FWeS~ 210 (321)
T PF08424_consen 206 FWESE 210 (321)
T ss_pred HhCcC
Confidence 76663
No 379
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.44 E-value=1.2e+02 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRN 173 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (500)
-...+..+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455556666777777666666554
No 380
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.44 E-value=91 Score=24.38 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010807 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170 (500)
Q Consensus 127 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 170 (500)
++.++|..|..++-..--+..|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888774455567788888888899999999988875
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.19 E-value=59 Score=27.67 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 427 TPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 427 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.|+..+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666666666555
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.89 E-value=1.2e+02 Score=25.51 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcC----CHHHHHHH-------HHHHHhCCCCCCHHHHHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQAR----NVDQVNAL-------FKELHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g----~~~~a~~~-------~~~m~~~g~~p~~~~~~~ll~~~ 265 (500)
..+++|+.-|++.... .|+ ..++..+..+|...+ +..+|... |+...+ ..|+...|+.-+...
T Consensus 49 ~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 49 KMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 5577777777777653 455 456666766666543 23333333 333333 356666666666554
Q ss_pred hhcCCHHHHHHHHHHHHhCC
Q 010807 266 GKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~ 285 (500)
++|-++..++.+.+
T Consensus 124 ------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 ------AKAPELHMEIHKQG 137 (186)
T ss_dssp ------HTHHHHHHHHHHSS
T ss_pred ------HhhHHHHHHHHHHH
Confidence 33555555555443
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.69 E-value=1.4e+02 Score=26.12 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALITAH 190 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~ 190 (500)
..++.+-+.++.++|+...+.-.+.. +.|...-..++..|+-.|++++|..-++-.-.. ...+...+|..+|.+-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 34566667788888888877665543 567777888899999999999998777766542 1234456666666543
No 384
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=56.67 E-value=73 Score=23.05 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=41.4
Q ss_pred HHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010807 98 RTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAM 165 (500)
Q Consensus 98 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 165 (500)
.++.........++...+-..-...|....|..+++.+.+.. .| .-+..++.++-..|...-|.
T Consensus 23 ~il~~l~~~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r--~~--~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 23 DILDHLPECLTDEDKEQILAEERNKGNIAAAEELLDRLERCD--KP--GWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhc--cC--CcHHHHHHHHHHcCCccHHH
Confidence 333333336666666667666656688888888888888621 12 24777888888887655443
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.25 E-value=61 Score=32.50 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
.|+...|.+.+.......+.-..+....|.+...+.|....|-.++.+..... ....-++-.+.++|.-..++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45556666665554433222222233334444445555555666655555433 23344555666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q 010807 383 FDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~li~~ 404 (500)
|++..+.... +...-+.|...
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHHHH
Confidence 7666664422 34444444433
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.22 E-value=2e+02 Score=27.93 Aligned_cols=183 Identities=14% Similarity=0.032 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 150 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS---VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
+.+...+..|+.+ +.+.+.+.|..|+.. ..+.+..+ + ..|+.+.+..+++.-..... ..+.. -.+.
T Consensus 37 tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A-~----~~g~~~~v~~Ll~~~~~~~~-~~~~~-g~tp 105 (413)
T PHA02875 37 SPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA-V----EEGDVKAVEELLDLGKFADD-VFYKD-GMTP 105 (413)
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH-H----HCCCHHHHHHHHHcCCcccc-cccCC-CCCH
Confidence 3445555667765 334444556555432 22333333 3 44556555555543221000 00000 1123
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHh
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYT--YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYG 301 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~ 301 (500)
+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.-++ +.|..++ ..-.+.|. ..+
T Consensus 106 L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~ 176 (413)
T PHA02875 106 LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAM 176 (413)
T ss_pred HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHH
Confidence 34445566654 4445556666554322 123344455667765544443 3443322 22223333 333
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 360 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 360 (500)
..|+.+ +.+.+.+.|..++... ...++......|+.+ +.+.+.+.|..++.
T Consensus 177 ~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 177 AKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 445544 3444555565554322 123444344556554 34444556665553
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.74 E-value=68 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.|++.+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356666666666666666666666666665543
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.69 E-value=87 Score=23.63 Aligned_cols=79 Identities=8% Similarity=-0.093 Sum_probs=31.6
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
..++|..+.+.+...+. ....+--+-+..+.+.|++++|+ ..-. ....||...|-+| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 34555555555555432 12222223333445555555551 1111 1123444444333 2335555555555555
Q ss_pred HHHhCC
Q 010807 420 NSHNMG 425 (500)
Q Consensus 420 ~m~~~~ 425 (500)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 389
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.37 E-value=1.5e+02 Score=27.31 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 241 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
++++.|...++.|.-.+|.-+.-.+.+.=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555666655555555555555556666666666554
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.23 E-value=86 Score=32.02 Aligned_cols=75 Identities=8% Similarity=-0.056 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMK--YTPSFITYECIITMYGYCDNVS------RAREIFDELSKLGKDMKVSTLNAM 401 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 401 (500)
+|+.+|...|++..+.++++...... -+.-...||..|+...+.|.++ .|.++++...- .-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 78888888898888888888887643 2223456777788888888653 34445544443 3367777777
Q ss_pred HHHHHh
Q 010807 402 LEAYCM 407 (500)
Q Consensus 402 i~~~~~ 407 (500)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665543
No 391
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.17 E-value=27 Score=31.85 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 217 KPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 258 (500)
Q Consensus 217 ~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 258 (500)
.||.. -||..|....+.||+++|++++++..+.|..--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45544 4668888889999999999999999888876444444
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.11 E-value=51 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRN 173 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (500)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 389999999999999999999999876
No 393
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=3.1e+02 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCC
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
|..++..-...+...|++..+.+++.++.+ .|-.++...|..+++.+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 445555555566677888888888888776 4777888888777776665553
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.39 E-value=15 Score=28.78 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 189 (500)
+...|.-.+|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556677788888888888888864 6666654
No 395
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.02 E-value=90 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=8.6
Q ss_pred HHHHhcCChhhHHHHHHHHHhC
Q 010807 403 EAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+...++.-.|.++++++.+.
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 3333333334444444444433
No 396
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.94 E-value=1.9e+02 Score=26.93 Aligned_cols=136 Identities=8% Similarity=0.017 Sum_probs=79.6
Q ss_pred CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC
Q 010807 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH----ESI 250 (500)
Q Consensus 175 g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~g 250 (500)
.+..|...++.+..+ +...+++--+..+...+..|-.--...+-.....||+.||-+.|++.+.... ..|
T Consensus 65 ~i~~D~~~l~~m~~~------neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g 138 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA------NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG 138 (393)
T ss_pred ceeccHHHHHHHHHh------hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 445666666666543 3344444444444444322222234456677788999999999998887654 457
Q ss_pred CCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 251 LAPDIYTYNGVMDA-YGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 251 ~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
.+.|+.-+..-+.. |....-..+-++..+.+.+.|..-+ .-+|..+- +....++.+|-.+|-+...
T Consensus 139 ~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 139 HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 77777666554443 3333334555666666667765422 22444332 2344688888888877654
No 397
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.90 E-value=1.4e+02 Score=25.39 Aligned_cols=180 Identities=13% Similarity=0.196 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 175 g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
|.-+|...++.++..+.......+.++-+..+=.+... .+..+ +....-.-+..|-+.||+.+.-.+|-....
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~-~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-- 79 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQA-RQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-- 79 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh--
Confidence 55566666666666665444444555554444444332 12222 222233334456666666665555543321
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 010807 251 LAPDIYTYNGVMDAYGKNGMIKE-----MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325 (500)
Q Consensus 251 ~~p~~~~~~~ll~~~~~~g~~~~-----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (500)
+|-+.++++. |..+.++.++ + ..+.|....++-++.-..+++.+.+- .
T Consensus 80 -------------gce~~~dlq~~~~~va~~Ltkd~Kd---k-~~vPFceFAetV~k~~q~~e~dK~~L----------G 132 (233)
T PF14669_consen 80 -------------GCEKFADLQRFCACVAEALTKDSKD---K-PGVPFCEFAETVCKDPQNDEVDKTLL----------G 132 (233)
T ss_pred -------------hcCCHHHHHHHHHHHHHHHHhcccc---c-CCCCHHHHHHHHhcCCccchhhhhhh----------h
Confidence 1111122221 2223333322 1 12235555555555544444433321 1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--------------PSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
.+=-+++-.|-+.-++.++..+++.|.+..+. +.-...|.-...+.+.|.+|.|..+++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 12234556677777888888888777654321 222344555566666666666666665
No 398
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.48 E-value=2.4e+02 Score=28.00 Aligned_cols=281 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc--hHHHHHHH
Q 010807 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKA 203 (500)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~~~~~a 203 (500)
+.|...++-.... +...+...-...--..+.+....+|++..+. -|+...|+..|..|....+ +...+...
T Consensus 268 ~laqr~l~i~~~t-----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 268 DLAQRELEILSQT-----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred HHHHHHHHHHHHh-----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc--CCHHHHHHHHHH
Q 010807 204 LGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN--GMIKEMESVLSR 280 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 280 (500)
+.+|+......+..++ ...|..+.-.++..+. +..+-..+...++.-+...|..-+....+. .---.-.+++..
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~ 417 (568)
T KOG2396|consen 341 MCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNH 417 (568)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 010807 281 MKSNQCKPDIITFNLLI-DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF-NSMIINYGKARLQGKAEYVFQKMTAMKYTP 358 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 358 (500)
+...-..+-...|+... ..+......+..+..+..+ ..++..|+ +.++.-+.+.|-..+|..++..+.... +|
T Consensus 418 ~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~ 492 (568)
T KOG2396|consen 418 LRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PF 492 (568)
T ss_pred HHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-Cc
Q ss_pred CHHHHHHHHHH---HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 359 SFITYECIITM---YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 359 ~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+...|..+|.. ...+| +.-+.++|+.+... +..|+..|-..+..=...|..+.+-.++.++.+
T Consensus 493 sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 493 SLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred cHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHHH
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.39 E-value=90 Score=27.87 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=22.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 263 DAYGKNGMIKEMESVLSRMKS----NQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
.-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+..+.+--+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334444444444444444321 121 12333344444555555555555444333
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.38 E-value=41 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADT-GIYSKLIAVMGKKGQTRLAMW 166 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 166 (500)
...-++|+..++...+...-.++. .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554432112221 234445555555555554443
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.05 E-value=52 Score=29.39 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=28.2
Q ss_pred HHHHHcccCCHHHHHHHHHHHH----HccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQ----KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 170 (500)
+-+.+.+.|++++|+++|+.+. +.+|..+...+...+..++.+.|+.+..+.+--+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444445566666666665542 2233444444455555555555555555444433
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=1.9e+02 Score=26.38 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----CCCCCCHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHE-SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKPDII 291 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~ 291 (500)
+-|...+|.|+.-- ..+.++--+-+++..+ .|-.-....+..+...|++.++.+.+.++..+..+ .|.+.|+.
T Consensus 78 kfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 44555666665421 1112222222222222 23333456788889999999999999988776544 47776765
Q ss_pred HHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 292 TFNL-LIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 292 ~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
...+ |.-.|....-.++-++..+.|.+.|...+. .+|.-+. +....++.+|..++.....
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 5443 444566666677888888899988875432 2333222 2334567777777766654
No 403
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.57 E-value=39 Score=22.82 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 394 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
+...++.++..+++..-.++++..+.++.+.|. .+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 344555666666665556666666666665552 344455444444443
No 404
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.83 E-value=2e+02 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 445 MKELVQKLLKRMEQNGIVPNKRFFL 469 (500)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~p~~~~~~ 469 (500)
+...|...+......|.......+.
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6777777777777777666666655
No 405
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=50.73 E-value=3.4e+02 Score=28.98 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHhhc
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-------------APDIYTYNGVMDAYGKN 268 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~~~~~ll~~~~~~ 268 (500)
+..+.++++....++.-+......+... ..|+...|+.++++....+- ..|...+..++..+ ..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~ 258 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AA 258 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 3344444444334444455444444433 25667777776665443210 11222233333332 23
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 010807 269 GMIKEMESVLSRMKSNQCK 287 (500)
Q Consensus 269 g~~~~a~~~~~~m~~~~~~ 287 (500)
|+..+++.+++++...|..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5566666666666655544
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.22 E-value=56 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHHHH
Q 010807 157 KKGQTRLAMWLFSEM 171 (500)
Q Consensus 157 ~~g~~~~A~~~~~~m 171 (500)
..|+.++|...+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444433333
No 407
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.07 E-value=1.6e+02 Score=25.03 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHcCcchHHHHHH
Q 010807 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALIT-AHLHTRDKAKALAK 202 (500)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~-~~~~~~~~~~~~~~ 202 (500)
++++++-+.+.. +...+-.....|++++|.+-++++.+. .++--...|..+.. +++.. ....+.+
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~--a~QEyvE 87 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTT--ALQEYVE 87 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc--hHHHHHH
Confidence 455665555544 334444456677788887777776432 11111223333333 33332 4456778
Q ss_pred HHHHHHHhhc
Q 010807 203 ALGYFQKMKG 212 (500)
Q Consensus 203 a~~~~~~~~~ 212 (500)
|.-+|..+..
T Consensus 88 A~~l~~~l~~ 97 (204)
T COG2178 88 ATLLYSILKD 97 (204)
T ss_pred HHHHHHHHhc
Confidence 8888877764
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.71 E-value=1.5e+02 Score=26.30 Aligned_cols=58 Identities=22% Similarity=0.137 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG-KNGMIKEMESVLSRMK 282 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~ 282 (500)
.++..+-..++++++...++++...+...+..-.+.+-.+|- ..|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355566677777777777777777766666655555555542 2333445555555444
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.02 E-value=18 Score=28.37 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
.|.-.+|..+|.+|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34555666777777777766663 5555543
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.87 E-value=1e+02 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELS 387 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~ 387 (500)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 411
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.61 E-value=88 Score=32.10 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 472 (500)
+.|++.+|.+.+-.+.+.++.|...-..-+.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 4577888888887777777777664443333
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=48.36 E-value=2.5e+02 Score=26.80 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 010807 330 SMIINYGKARLQ---GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 397 (500)
Q Consensus 330 ~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 397 (500)
.++..+...++. -+|..+++...... +-|...--.+++.|...|-.+.|...|..+.-+.++.|.-.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~ 254 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLG 254 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhH
Confidence 344444444443 45666777666654 45566666778888888888888888887765555444433
No 413
>PRK10941 hypothetical protein; Provisional
Probab=47.79 E-value=2.1e+02 Score=26.03 Aligned_cols=61 Identities=7% Similarity=-0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+.+-.+|.+.++++.|+++.+.+....+ -++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35566777788888888888888877643 35555666666777888888887777776654
No 414
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.22 E-value=2.5e+02 Score=26.33 Aligned_cols=118 Identities=7% Similarity=0.030 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK---RQAFDKMEQVF 313 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~ 313 (500)
+.-+.++++.++... -+......+|..+.+..+.++..+.++++...... +...|...++.... .-.++.+..+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344555666555533 24555555666666666666666666666665222 45555555554333 22344444444
Q ss_pred HHHHhC------CC----CCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 314 KSLMHS------KE----KPTL-------PTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 314 ~~~~~~------~~----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
.+.++. +. .+.. ..+.-+...+.+.|..+.|..+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 433211 10 0011 1222233334556777777777777777543
No 415
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=46.81 E-value=50 Score=26.11 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
...|-..+...++++|.++|+..+...|..+++..
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 35566666777777777777777777777777655
No 416
>PRK09857 putative transposase; Provisional
Probab=45.50 E-value=1.8e+02 Score=26.73 Aligned_cols=64 Identities=6% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
.++.-..+.++.++-.++++.+.+. +.......-++..-+.+.|.-+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334455555555555555443 222333344455555666666677777888887777665
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.49 E-value=1.2e+02 Score=22.14 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=15.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.......|++++|...+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344456677777777777776643
No 418
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.45 E-value=2.1e+02 Score=24.95 Aligned_cols=26 Identities=4% Similarity=0.033 Sum_probs=16.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 438 KAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
....+.|+.++|.++|.+....+-..
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 34556777777777777777654333
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.33 E-value=2.3e+02 Score=25.52 Aligned_cols=190 Identities=15% Similarity=0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
+.+++++|++++..-.. .+.+.|+...|-++-..|.+. +.++|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~Ga~----------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL----------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHHHH----------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 010807 272 K-EMESVLSRMKSN-----QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345 (500)
Q Consensus 272 ~-~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (500)
+ +-.++.+++.+. ...-+......+...|.+.+++.+|+..|-.- -.++...+..++......|...+.
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~- 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA- 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H-
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch-
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHH--HHHHHhcCC
Q 010807 346 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL-------------GKDMKVSTLNAM--LEAYCMNGL 410 (500)
Q Consensus 346 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------~~~~~~~~~~~l--i~~~~~~g~ 410 (500)
.......+--|...+++..|...++...+. ++.++....|-+ +-.-+..++
T Consensus 141 --------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 141 --------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp --------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred --------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Q ss_pred hhhHHHHHHH
Q 010807 411 PTEADLLFEN 420 (500)
Q Consensus 411 ~~~A~~~~~~ 420 (500)
.+.-..+.++
T Consensus 207 ~~~F~~L~~~ 216 (260)
T PF04190_consen 207 LPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=2.2e+02 Score=25.22 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=77.8
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHh
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDI-ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQG 342 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~ 342 (500)
|.....++.|+.-|.+.... .|+. ..|+.=+.++.+..+++.+..--...++ +.|+.+ ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 66667788888866666554 5666 4456666677888888888776666655 445544 3344555666777888
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 343 KAEYVFQKMTA----MKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 343 ~a~~~~~~m~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
+|+..+.+... ..+.+.......|..+=-..-.+.+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88888877643 3344555666777776666666666666666554
No 421
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.76 E-value=96 Score=20.94 Aligned_cols=49 Identities=8% Similarity=0.197 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.|+...++.++..+++..-.++++..+++..+.|. .+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 45566778888888888888888888888888774 56666666666665
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.53 E-value=4.9e+02 Score=29.05 Aligned_cols=152 Identities=11% Similarity=0.029 Sum_probs=91.6
Q ss_pred HHhccCCHHHHHHHHHHHHh-----------------------CCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMH-----------------------SKEKPT-----LPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~-----------------------~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+|...|+..+|++.|.+... .|-.|. ..-|...++.+.+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36667888899988876522 122221 33477788888888999998888777
Q ss_pred HHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh------------H
Q 010807 351 MTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE------------A 414 (500)
Q Consensus 351 m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------A 414 (500)
.++. ++++ ..+++++.+.....|.+-+|...+-.-.... --......++..++.+|.++. .
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 7664 2222 4567888888888888888876553221110 113345566666777766543 3
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 415 DL-LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 415 ~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
.. +++..-+.........|+.|...+...+++.+|-.++
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 33 2333222222222344666666667888888766543
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.49 E-value=3e+02 Score=26.55 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG 212 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~ 212 (500)
..+.-+...|..+|+++.|++.|-+....- .+.....|-.+|..-+ -.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI----~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI----YMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH----hhcchhhhhhHHHHHHh
Confidence 357778888888999999999988855431 1122334444444444 44555555555555543
No 424
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.07 E-value=95 Score=20.68 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=28.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HHcCCHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-----TKANMKELVQKLL 453 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~ 453 (500)
+...|++-+|-++++.+-...-.+....+..||+.. .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777766433233455566666543 3567776666543
No 425
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.06 E-value=1e+02 Score=24.78 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=31.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (500)
...+.+.|++++.. -..++..+...++.-.|.++++++.+.++..+..|...-+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555554432 23444555555555666666666666655555555444444444444
No 426
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=43.61 E-value=23 Score=23.75 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTG 146 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (500)
.-+++.|+..|..+...+.++++++
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3688999999999998887877754
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.53 E-value=2.1e+02 Score=26.40 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 346 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 346 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 45566666666666666555555555666666666666665542 222555555554
No 428
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.00 E-value=1e+02 Score=23.25 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=8.9
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 010807 366 IITMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~ 385 (500)
++..|...++.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33344444555555544444
No 429
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.93 E-value=2.9e+02 Score=25.91 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccC--CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHH-HHH
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRW--YIADTGI--YSKLIAVMGKKGQTRLAMWLFSEMRN-----SGCRPDPS-VYN 184 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~ 184 (500)
++....+.++.++|++.++++.+.-. -.|+... -..+...+...|+..++.+.+++..+ .|+.|+++ .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 34444445688999999988866421 2345544 34556677788999999999988877 57777443 344
Q ss_pred HHHHHHH
Q 010807 185 ALITAHL 191 (500)
Q Consensus 185 ~li~~~~ 191 (500)
.+-.-|.
T Consensus 161 ~lssqYy 167 (380)
T KOG2908|consen 161 SLSSQYY 167 (380)
T ss_pred HHHHHHH
Confidence 4444343
No 430
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.78 E-value=2.8e+02 Score=25.63 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHhccCCHHHHHHHHHH-HHhCCCCCCHH----HHHHHHHHHHhcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 296 LIDSYGKRQAFDKMEQVFKS-LMHSKEKPTLP----TFNSMIINYGKARLQ-GKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
|..-..+...+++.+...++ |.+.+ -|+.. .|..++++-.-..+- .-|.+.++.+ .+|.-|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHH
Confidence 33334455566666665554 44444 44543 566666554333211 1233344333 468889999
Q ss_pred HhccCCHHHHH
Q 010807 370 YGYCDNVSRAR 380 (500)
Q Consensus 370 ~~~~~~~~~A~ 380 (500)
++..|+.+-.+
T Consensus 331 f~s~g~sEL~L 341 (412)
T KOG2297|consen 331 FCSQGQSELEL 341 (412)
T ss_pred HhcCChHHHHH
Confidence 99999987654
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.64 E-value=2.2e+02 Score=25.28 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHh
Q 010807 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMH 318 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~ 318 (500)
.+...+-+.|+++++...++++...+...+..--+.+-.+|-. -|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566677889999999999999888777777666666666633 2455566666665543
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.62 E-value=3.3e+02 Score=26.55 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=13.2
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFI 361 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~ 361 (500)
.+.+.|..++..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 55666666666666665544433
No 433
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.34 E-value=2.7e+02 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIV-------TYNILLRACAQARNVDQVNAL 242 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~ 242 (500)
+.+++++|+..+.++.. .|+..+.. +...+...|...|+....-+.
T Consensus 15 ~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 15 KSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred hhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 45556666666666665 34443332 233445555555555444333
No 434
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.20 E-value=3.8e+02 Score=26.79 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (500)
+...+..++.+....+....|+.++.++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444555566655555555667777777777766544
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.58 E-value=3.8e+02 Score=26.63 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh-------CCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHN-------MGVTPD-----------SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
|.|...+.+.|.+..+..+|.+..+ .|++|. ..+|+. .-.|.+.|+.-.|.+.|.+....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v- 364 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV- 364 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-
Confidence 4554445555555555555554442 344432 222332 33456777777777777766543
Q ss_pred CCCCHHHHHHHHHHHh
Q 010807 461 IVPNKRFFLEALETFS 476 (500)
Q Consensus 461 ~~p~~~~~~~ll~~~~ 476 (500)
++.++..|..+.++|-
T Consensus 365 fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhcCcHHHHHHHHHHH
Confidence 4556677777766664
No 436
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.37 E-value=3e+02 Score=25.33 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHH
Q 010807 358 PSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
-|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 45566666666666666554443
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.22 E-value=2.6e+02 Score=24.54 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=12.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 010807 226 LLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
-|......|+.+.|++....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444455666666666555543
No 438
>PRK09169 hypothetical protein; Validated
Probab=39.76 E-value=7.8e+02 Score=30.02 Aligned_cols=350 Identities=10% Similarity=0.009 Sum_probs=199.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHc---CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCC-
Q 010807 144 DTGIYSKLIAVMGKKGQTRLA----MWLFSEMRNS---GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER- 215 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~- 215 (500)
+..-....+++++|..+-+.+ ..+-+.+... .-.-+..-....+.++.+-.+....-..+..+...+....+
T Consensus 329 ~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l 408 (2316)
T PRK09169 329 NAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGL 408 (2316)
T ss_pred CHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhh
Confidence 455567788888888876653 3333333221 01346667778888998766422222334444444443211
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhC---CCCCCHHHHHHHHHHHhhcCCHHH----HHHHHHHHHh
Q 010807 216 -CKPNIVTYNILLRACAQARNVDQVNALFKEL----HES---ILAPDIYTYNGVMDAYGKNGMIKE----MESVLSRMKS 283 (500)
Q Consensus 216 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~---g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~ 283 (500)
-.-|..-....+++++|-+.-+.+.+....+ ... .-..|..-..+.+.+++|-++-+. +..+...+..
T Consensus 409 ~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~ 488 (2316)
T PRK09169 409 RAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAG 488 (2316)
T ss_pred hhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 1245666778889999887755433332222 111 023467778888999998776543 3333333322
Q ss_pred C---CCCCCHHHHHHHHHHHhccCCHHHHHH----HHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHhH----HHHHHH
Q 010807 284 N---QCKPDIITFNLLIDSYGKRQAFDKMEQ----VFKSLMHS---KEKPTLPTFNSMIINYGKARLQGK----AEYVFQ 349 (500)
Q Consensus 284 ~---~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~ 349 (500)
. .-..+......++.++.|-++.+.+.. +...+... -...+..-....+.++.+-.+.+. +..+..
T Consensus 489 ~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~ 568 (2316)
T PRK09169 489 DAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAA 568 (2316)
T ss_pred ChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1 122466778889999999887765433 33333221 123477788889999999776433 233444
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 350 KMTAMK---YTPSFITYECIITMYGYCDNVSR----AREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 350 ~m~~~~---~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
.+.... -..+..-..+.+.++.+-++-.. +..+...+... .-..|..-+..+++++++-.+.+.+.....
T Consensus 569 ~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~ 648 (2316)
T PRK09169 569 RLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAE 648 (2316)
T ss_pred HHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 333221 23567788899999999886543 33344443321 123577888889999999887766543333
Q ss_pred HH----HhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C---CCCCHHHHHHHHHHHhcCCCCCCCc
Q 010807 420 NS----HNMG---VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN----G---IVPNKRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 420 ~m----~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g---~~p~~~~~~~ll~~~~~~g~~~~~~ 485 (500)
.+ .... -..+..-+..+++++.+-.+.+.+......+... + -.-|......++.++.+-...+...
T Consensus 649 aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr 728 (2316)
T PRK09169 649 ALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACR 728 (2316)
T ss_pred HHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHH
Confidence 22 2211 1235677788889999988866544444333211 1 1235566677777777655444333
Q ss_pred cchhhhhh
Q 010807 486 SAKTDLTR 493 (500)
Q Consensus 486 ~~~~~l~~ 493 (500)
.....|..
T Consensus 729 ~A~~~LA~ 736 (2316)
T PRK09169 729 AAAEALAG 736 (2316)
T ss_pred HHHHHHHH
Confidence 33333333
No 439
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.75 E-value=4.1e+02 Score=29.93 Aligned_cols=154 Identities=11% Similarity=0.014 Sum_probs=96.9
Q ss_pred hccCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-------hCCCCCCHHHHHHHH
Q 010807 301 GKRQAFDKMEQ------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-------AMKYTPSFITYECII 367 (500)
Q Consensus 301 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~~~~~li 367 (500)
...|.+.++.+ ++......-.+.....|..+...+.+.++.++|...-.... ...-.-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455665555 55533333234456778888888899999999887654431 112122345566666
Q ss_pred HHHhccCCHHHHHHHHHHHHH-----CC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C--CCCCHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSK-----LG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----G--VTPDSSTY 433 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p~~~~~ 433 (500)
-.+...+....|...+..... .| .+|...+++.+-..+...++++.|+++++.+... | -..+..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 666666777778777776654 12 2444555555555555668899999998887653 1 12356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 010807 434 KLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~ 454 (500)
..+.+.+...+++..|....+
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHh
Confidence 888888888888777665544
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.04 E-value=8.1e+02 Score=29.97 Aligned_cols=60 Identities=8% Similarity=-0.083 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+|-...+..-+.|+++.|...+-+..+.+ . +..+-..+.-..+.|+...|+.++++-.+.
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444444555566666655554444443 1 233444445555666666666666655543
No 441
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=38.94 E-value=2.1e+02 Score=23.11 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMKSNQ-----CKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
+.++......+.+...+.+++.+.--. -..+...|.+++.+..+..- --.+..+|+-+.+.+.+.+..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555554444442110 01123334444444433333 223344444444444444444444444
Q ss_pred HHHHh
Q 010807 333 INYGK 337 (500)
Q Consensus 333 ~~~~~ 337 (500)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 44443
No 442
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.92 E-value=2e+02 Score=22.93 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.++..+--.+-.+++++. ...++.+.+.+++.+.+.......-....-|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455555556666777766 577888888899888752211222333344555788899999999999888765
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.20 E-value=1.8e+02 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888776
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.54 E-value=3.9e+02 Score=25.84 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
..+.-+...|..+|+++.|++.|.+.+.-- .+-....|-.+|..-.-.|+|..+..+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456667778888888888888888855421 1113344555566666677777777777766543
No 445
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.49 E-value=1.3e+02 Score=21.32 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA 185 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 185 (500)
+++.+.++.-.++|+++++.|.++| ..+...-+.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 5666777777888888888888776 344444333
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.35 E-value=2e+02 Score=22.50 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHH-------HhhhccCcchHHHHHHHHccc---------------------CCHHHH
Q 010807 77 LESKELVRVLMRSFSDKEPLVRTLN-------KYVKVVRSEHCFLLFEELGKS---------------------DKWLQC 128 (500)
Q Consensus 77 ~~a~~l~~~l~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~l~~~l~~~---------------------~~~~~A 128 (500)
.+-..+...|.+.....+|+..-++ .+...+.......+++.+.+. +...+.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp 82 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP 82 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010807 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFS 169 (500)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 169 (500)
.++|..|..++--..-+..|......+-..|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 447
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.18 E-value=5.1e+02 Score=27.15 Aligned_cols=181 Identities=8% Similarity=-0.111 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 233 ARNVDQVNALFKELHESI-LAPDI--YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
..+.+.|..++....... +.+.. .....+....+..+...++...++....... +......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHH
Confidence 445678888888764432 22221 2233333333333224566666665443322 333344444455578888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------------CCCC--------CH-H-----HH
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------------KYTP--------SF-I-----TY 363 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~~--------~~-~-----~~ 363 (500)
...+..|.... .-...-..-+..++...|+.++|...|+.+... |.++ .. . .-
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 88888875432 224445556677777788888888888876321 1110 00 0 00
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
..-+..+...|+...|...+..+... .+......+.....+.|.++.++....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 11223344556666666666655553 234444445455555666666655443
No 448
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.89 E-value=1.7e+02 Score=23.62 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344556655433 23444444443 3566777777777766655566665555555555553
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.48 E-value=1.7e+02 Score=24.27 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=38.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
.+...|++.+..= ..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+
T Consensus 16 ~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 16 LCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445666655443 345555555566677888888887777666766666666666666643
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=5.1e+02 Score=26.80 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 010807 182 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI------VTYNILLRACAQARNVDQVNALFKELHESILAPDI 255 (500)
Q Consensus 182 ~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (500)
.||..-..+ +..++..++++|..-.. .++.|. -....|--.|.+..+.|.|.+++++..+.... +.
T Consensus 357 LWn~A~~~F-----~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLF-----KMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SP 428 (872)
T ss_pred HHHhhHHHH-----HHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cH
Confidence 444444444 67788889988887653 223332 23455666777888999999999999886433 44
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMK 282 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~ 282 (500)
.+--.+.......|.-++|+.......
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 555556667777888888888776654
No 451
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.10 E-value=4.6e+02 Score=26.25 Aligned_cols=15 Identities=7% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhh
Q 010807 197 AKALAKALGYFQKMK 211 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~ 211 (500)
.|+...|+.++++..
T Consensus 213 ~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 213 DGSVRDMLSFMEQAI 227 (484)
T ss_pred CChHHHHHHHHHHHH
Confidence 355666666665543
No 452
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.01 E-value=1.7e+02 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 241 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
++|+-....|+..|...|..+++...-+=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666677777777777776666665566666666666654
No 453
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.96 E-value=51 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCC
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIA 143 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~ 143 (500)
+++-+.+++--++|++++++|.++|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 55666666788899999999999886544
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.91 E-value=3.6e+02 Score=24.97 Aligned_cols=223 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHH---------HHhCCCCCC--HHHHHHH
Q 010807 199 ALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQAR-----NVDQVNALFKE---------LHESILAPD--IYTYNGV 261 (500)
Q Consensus 199 ~~~~a~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~---------m~~~g~~p~--~~~~~~l 261 (500)
.+..++++...+ .. ..+..+|..++..+.... ..+.....|+. +.+.|..+. ......+
T Consensus 55 ~~~~~l~l~~~~~~~----E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 130 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPN----ETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRL 130 (324)
T ss_dssp -HHHHHHHHGGG-GT------SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHH
T ss_pred CHHHHHHHHHHhccC----CCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHH
Q ss_pred HHHH-hhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 262 MDAY-GKNGM-----IKEMESVLSRMKSNQC----KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 262 l~~~-~~~g~-----~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
+... ..... .+.|.+.|++....+. ..+...-..++....+.|+.+.-..+++... -..+...-..+
T Consensus 131 lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~---~~~~~~~k~~~ 207 (324)
T PF11838_consen 131 LRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK---NSTSPEEKRRL 207 (324)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH---TTSTHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh---ccCCHHHHHHH
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHh
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY-GYCDNVSRAREIFD---ELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~---~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+.+.+...+.+....+++.....+..++......+.... ......+.+.+.+. .........+......++..+..
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCT
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc
Q ss_pred cCChhhHHHHHHHHH--hCCCCC
Q 010807 408 NGLPTEADLLFENSH--NMGVTP 428 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~--~~~~~p 428 (500)
.-..++-.+-++++. .....|
T Consensus 288 ~~~t~~~~~~~~~f~~~~~~~~~ 310 (324)
T PF11838_consen 288 NFSTEEQLDELEEFFEDKPKPPP 310 (324)
T ss_dssp T--SHHHHHHHHHHHHHHCTCCC
T ss_pred cCCCHHHHHHHHHHHhhCcCCCh
No 455
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.45 E-value=5.1e+02 Score=26.97 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-------------CCHHHHHHH
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-------------PDSSTYKLL 436 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~~~~~l 436 (500)
+.....-+-...+-+.+.+.|+..+......++. ...|+...|+.++++....+-. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
+.++.. |+...++.++++|.+.|..|
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH
No 456
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.15 E-value=4.9e+02 Score=26.33 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPD 254 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (500)
+......++.++. .|+.+.++.++++|...|..|.
T Consensus 245 ~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3334444555443 4778888888888888877654
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.13 E-value=2.6e+02 Score=23.18 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 414 (500)
-+.+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|.-..+..+...|-+.+.
T Consensus 14 ~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 14 EKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3445667877775544 44455555566778999999999988777777777777888888877654
No 458
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.42 E-value=2.1e+02 Score=21.87 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 187 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 187 (500)
+|+.+.++...++|+++++.|.++| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5566777777888888888887776 44554444443
No 459
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=34.14 E-value=1.1e+02 Score=25.14 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (500)
..+.|...+...+|+. ...+++...+..++ +...+..+++-+...|+--.++-.++
T Consensus 100 ~I~~L~~~a~~~kD~~-T~nFLqWfv~EQ~e-Ee~l~~~I~d~~~~ag~~~~~l~~~D 155 (167)
T COG1528 100 SINELAEVAREEKDYA-TFNFLQWFVAEQVE-EEKLFKTILDKLELAGNDGEGLYLID 155 (167)
T ss_pred HHHHHHHHHHHcCchh-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCccchhhhH
Confidence 4455666666666654 35566666655555 56666666666666666444444444
No 460
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.93 E-value=3.4e+02 Score=24.15 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=75.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCH
Q 010807 229 ACAQARNVDQVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-LLIDSYGKRQAF 306 (500)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~ 306 (500)
-|.....++.|+..|-+.+. +.|+. .-|+.-+-++.+..+++.+..=-....+. .||.+--. .+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 45566778889887766655 45666 44566777788888888887766665554 55655433 445566677889
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 307 DKMEQVFKSLMH----SKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 307 ~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+.|+..+++... ..+.+.......|..+--+.-...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999987732 33444455566666554444444455555444
No 461
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.90 E-value=2e+02 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=9.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 010807 226 LLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m 246 (500)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 462
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.89 E-value=1.1e+02 Score=31.32 Aligned_cols=27 Identities=4% Similarity=0.052 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010807 255 IYTYNGVMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~m 281 (500)
.....-++..|.+.|-.+.+.++.+.+
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444445555555555555554443
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.87 E-value=2.3e+02 Score=22.13 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
.+.++|+.|...|+-.. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555443322 3444555555555555555555554
No 464
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.65 E-value=1.4e+02 Score=22.66 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
+..-.|.++++.+.+.+..++..|.-..+..+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333444444444444433344433333444444443
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.59 E-value=4.6e+02 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
..+.+.|+.++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777788888888777766654444443333
No 466
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.26 E-value=6.5e+02 Score=27.15 Aligned_cols=182 Identities=9% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
+.+....+...|+.++...+-..|.. |..++..+.+.+.+++|.+++..-. +...+...--.+ .
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i 570 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-I 570 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-H
Confidence 34444455566777776666555542 5677777888888888888776531 221111111111 1
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 414 (500)
...+.+-...|..+.. ..+......++..+.+. .....+...++-....-..-++..+|.++..|++..+-+.
T Consensus 571 ~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l- 646 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL- 646 (911)
T ss_pred hcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch-
Confidence 1122222233222222 22233334444444444 2334444444433332233477888888888877654333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCC
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANM------KELVQKLLKRMEQNG 460 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g 460 (500)
...++.....+-. ...-....++.|.+.+. ..-++++|.++.+..
T Consensus 647 l~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlA 697 (911)
T KOG2034|consen 647 LLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLA 697 (911)
T ss_pred HHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHH
Confidence 3333332221111 22233445556665554 333444455554443
No 467
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.26 E-value=6.7e+02 Score=27.29 Aligned_cols=27 Identities=15% Similarity=-0.032 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010807 225 ILLRACAQARNVDQVNALFKELHESILA 252 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (500)
.++++.. .++...++.+++++.+.|..
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 3444433 45666677777777666654
No 468
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.22 E-value=6.1e+02 Score=26.84 Aligned_cols=173 Identities=13% Similarity=0.202 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHhhcCCHHHHHHHHHHHHhC-C-CC
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDI----------YTYNGVMDAYGKNGMIKEMESVLSRMKSN-Q-CK 287 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~~ 287 (500)
..+...++-.|....+++..+++.+.+.+. ||. +.|.-.++---+-|+-++|+.+.-.+.+. | +.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 334455566677777788888888877654 222 12333444444567778888877666654 2 34
Q ss_pred CCHHHH-----HHH--HHHHhccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 010807 288 PDIITF-----NLL--IDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357 (500)
Q Consensus 288 ~~~~~~-----~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 357 (500)
||..+. .-+ -+.|...+..+.|++.|++.-+ +.|+.. -+..|+.+-++. ++.-. +|+..|+
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~----Elq~Igm- 348 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSL----ELQQIGM- 348 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchH----HHHHHHH-
Confidence 554322 111 1223445666778888887765 344433 233444333321 11111 1222221
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.|-..+++.|.+++..++|+-. +| +.+-.-.+++.+|.+.-+.|.+.
T Consensus 349 -------kLn~LlgrKG~leklq~YWdV~----------~y---~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 349 -------KLNSLLGRKGALEKLQEYWDVA----------TY---FEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -------HHHHHhhccchHHHHHHHHhHH----------Hh---hhhhhhccCHHHHHHHHHHHhcc
Confidence 1223345666666665555422 22 22333456677777777766654
No 469
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.14 E-value=3.4e+02 Score=23.84 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 010807 321 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITY--ECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 321 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 395 (500)
+.+...-+|.|+--|.-...+.+|...|.. +.|+.+ |..++ ..-|......|++++|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 445555666666666666556666655543 333333 22232 34455567777777777777766543233333
Q ss_pred HHHHHHHH----HHHhcCChhhHHHHHHH
Q 010807 396 STLNAMLE----AYCMNGLPTEADLLFEN 420 (500)
Q Consensus 396 ~~~~~li~----~~~~~g~~~~A~~~~~~ 420 (500)
..+-.|.. -..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23222221 23456666666666654
No 470
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.29 E-value=1.3e+02 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=16.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
++..+...+..-.|.++++.+.+.+...+..|...-+..+.
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 53 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLE 53 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHH
Confidence 33333343344444444444444444444443333333333
No 471
>PRK10941 hypothetical protein; Provisional
Probab=32.19 E-value=3.9e+02 Score=24.28 Aligned_cols=80 Identities=10% Similarity=0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 475 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 475 (500)
..+.+-.+|.+.++++.|+.+.+.+.... +.|+.-+.--.-.|.+.|.+..|..=++...+. --.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34567788999999999999999999864 335555666667789999999999999888765 4567777777777666
Q ss_pred hc
Q 010807 476 SS 477 (500)
Q Consensus 476 ~~ 477 (500)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 54
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.05 E-value=6.4e+02 Score=26.70 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHhh
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-------------LAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~~~~~ll~~~~~ 267 (500)
++....+.......|+.-+......++... .|+...++.+++++...| -..+......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
++...++.+++++...|.. -......|+..+
T Consensus 259 -~d~~~al~~l~~L~~~G~d-~~~~l~~L~~~l 289 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVG-FDNALGELAILL 289 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
No 473
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.00 E-value=1.4e+02 Score=19.13 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010807 150 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 189 (500)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 189 (500)
.+.-++.+.|++++|.+..+.+++. +|+..-...|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Confidence 4556778999999999999999885 7877666555443
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.79 E-value=1.6e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCC
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIA 143 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~ 143 (500)
.+++-+.++...++|+++.++|.++|.+.+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEIt~ 95 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEITP 95 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 367777777889999999999999986543
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.78 E-value=1e+02 Score=23.49 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555555566677777777766655666665555566655553
No 476
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.70 E-value=2.3e+02 Score=21.50 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 452 (500)
....++|..+.+-+...+. ....+--.-+..+.+.|+|++| +..- ... -.||...|..|- -.+.|..+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~-~~~-~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLP-QCH-CYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHH-TTS---GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc-ccC-CCccHHHHHHHH--HHhhccHHHHHHH
Confidence 3456777777777776553 2233333345567788888888 2222 222 256766666553 3477777777777
Q ss_pred HHHHHHCC
Q 010807 453 LKRMEQNG 460 (500)
Q Consensus 453 ~~~m~~~g 460 (500)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776554
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.60 E-value=72 Score=24.57 Aligned_cols=49 Identities=4% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
..++..+...+..-.|.++++.|.+.|...+..|....|+.+.+.|-..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4456666676667789999999999999999999999999998887553
No 478
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.43 E-value=4.3e+02 Score=24.93 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADT----GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 190 (500)
++.+..----++.+.++..+.+. .|++ .-|-+++......|.++.++.+|++....|..|-...-..++..+
T Consensus 110 l~Li~eGcp~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 110 LNLIEEGCPKEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.09 E-value=7e+02 Score=27.29 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCH
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE-SILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
.+.-.+.|.++...-. ..|..++..-..-+...|++..+.+++.++.+ .|-.++...|..++..+...|--
T Consensus 1212 ld~~~e~y~el~kw~d-~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLD-ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhh-cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 3444445544443111 33555666666667778889999998888766 45566777777777777666654
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.72 E-value=3.1e+02 Score=28.36 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHS--KEKPTLPTFNSMIINYGKARLQG------KAEYVFQKMTAMKYTPSFITYECI 366 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 366 (500)
.|..+|...|++-.+.++++.+... |-+.-...||..|+...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999998764 23334567888889999988764 3344444333 56688899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+.+-.+--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887764444445555555554
No 481
>PRK09857 putative transposase; Provisional
Probab=30.56 E-value=4.1e+02 Score=24.50 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=26.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 357 (500)
.++......++.++..++++.+.+. .+.......++..-+.+.|..+++..+..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3443334445544445555444433 1112222223334444444444445555555555543
No 482
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.35 E-value=7e+02 Score=26.64 Aligned_cols=46 Identities=7% Similarity=-0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 306 FDKMEQVFKSLMH--------SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 306 ~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
.+....+++.... .++..+......++... .|+..++..+++.+..
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 4566666666554 23455666666666543 7888888888887653
No 483
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.97 E-value=5.2e+02 Score=25.07 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+......++.. ..||...++..++.+.... +++. . -..+...+++.+-... ...+-..+-.+++
T Consensus 191 ~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~-~-----------~~~~~l~~~l~~~~~~-~Dk~gD~hYdliS 254 (436)
T COG2256 191 DEEALDYLVRL--SNGDARRALNLLELAALSA-EPDE-V-----------LILELLEEILQRRSAR-FDKDGDAHYDLIS 254 (436)
T ss_pred CHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCc-c-----------cCHHHHHHHHhhhhhc-cCCCcchHHHHHH
Confidence 33344444432 3678777877777665432 1121 0 0123333333332222 1224344445666
Q ss_pred HHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHhCCCC
Q 010807 299 SYGK---RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ-----GKAEYVFQKMTAMKYT 357 (500)
Q Consensus 299 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~~~ 357 (500)
++.| -.+.+.|+-++-+|++.|..|-...-..++-++..-|.- ..|...++.....|.+
T Consensus 255 A~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~P 321 (436)
T COG2256 255 ALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSP 321 (436)
T ss_pred HHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCc
Confidence 6654 468888888888888888776666666666666555542 2344455555555643
No 484
>PRK12798 chemotaxis protein; Reviewed
Probab=29.94 E-value=5.3e+02 Score=25.09 Aligned_cols=198 Identities=10% Similarity=0.077 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKSLMHS--KEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
.|+.+++.+.+..+.....++....|-.|+.+- .-..+...|+++|+...-. |.-.......--+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 566666666666666555555555555555443 2345666666666655431 1111122333334445566666666
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 345 EYVFQKMTAM-KYTPSF-ITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 345 ~~~~~~m~~~-~~~~~~-~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
..+-.....+ ...|-. ..+..+...+.+..+ .+.-..++..|.. .--..+|-.+...-.-.|+.+-|.-.-+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5554444332 112221 122223333333332 2222222222211 1124566666666666777766666555
Q ss_pred HHHhCCCCCC-HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010807 420 NSHNMGVTPD-SSTYKLLYKAY--TKANMKELVQKLLKRMEQNGIVPNKRFF 468 (500)
Q Consensus 420 ~m~~~~~~p~-~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 468 (500)
+.....-..+ ...-..|-.+. .-..+++++.+.+..+....+.|...-+
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L 333 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL 333 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH
Confidence 5544321111 01111111111 2344566777766666666665554443
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.82 E-value=5.2e+02 Score=24.94 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=35.7
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHhHHHHHHHHHHhC
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGK--ARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 354 (500)
+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34678888888888888776 444433 45555555544 45677788888776654
No 486
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.44 E-value=1.9e+02 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
+.+.|..++..+.... +-++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4456666666666543 33577788777666554
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.22 E-value=4e+02 Score=23.51 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 252 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (500)
..|.+ +..++-.+...|+++.|+++.+.+++.|..
T Consensus 81 ~qd~V-l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 81 YQDDV-LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CCCCe-eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 34433 334444667889999999999988888844
No 488
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.07 E-value=97 Score=16.35 Aligned_cols=14 Identities=0% Similarity=0.093 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHc
Q 010807 125 WLQCLEVFRWMQKQ 138 (500)
Q Consensus 125 ~~~A~~~~~~~~~~ 138 (500)
++.|..+|+.+...
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555554443
No 489
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.87 E-value=2.3e+02 Score=20.49 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
++|+-....|+..|...|..++....-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555666666555554444444444444444443
No 490
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=28.48 E-value=2.2e+02 Score=20.34 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010807 98 RTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAM 165 (500)
Q Consensus 98 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 165 (500)
.++.... ....++...+-......|....|..+++.+. ++ ..-|..++.++...|...-|.
T Consensus 22 ~il~~L~-~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~-----~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 22 EVLPYLT-CLTAEDKERIQAAENNSGNIKAAWTLLDTLV-RR-----DNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHhhCC-cCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-----CChHHHHHHHHHHcCCHHHHH
Confidence 3333333 6666777777777667788888999988888 32 234778888888888766654
No 491
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.81 E-value=4.1e+02 Score=23.13 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHccCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010807 125 WLQCLEVFRWMQKQRWYIA---D-TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG 175 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 175 (500)
...|++.|+...+....+. + ..+.-.+.....+.|+.++|.+.|..+...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3567778877766543321 1 2344456667778888999999888888753
No 492
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.79 E-value=5.8e+02 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
..+.||..+.+-+...++..-..+-..++|+-..+.+
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3455666665555555555555555566666555543
No 493
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.70 E-value=6.5e+02 Score=25.46 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-------------APDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
.|+..+......++... .|+...|..+++++...|- .++......++.++. .|+.+.++.++++
T Consensus 194 egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~~ 270 (509)
T PRK14958 194 ENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVTR 270 (509)
T ss_pred cCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 45555555555554432 5777777777766554321 112222333344333 3666777777777
Q ss_pred HHhCCCCCC
Q 010807 281 MKSNQCKPD 289 (500)
Q Consensus 281 m~~~~~~~~ 289 (500)
|...|..|.
T Consensus 271 l~~~g~~~~ 279 (509)
T PRK14958 271 LVEQGVDFS 279 (509)
T ss_pred HHHcCCCHH
Confidence 777766654
No 494
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.63 E-value=5.6e+02 Score=24.68 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=31.3
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTG--IYSKLIAVMGK--KGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 174 (500)
.+-+.++|..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344567777777777777664 233332 34444444443 44566777777766543
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.25 E-value=3.3e+02 Score=21.88 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=44.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
-+.+.+.|++++..=. .++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-..+
T Consensus 5 ~~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 5 NTALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455667777665433 344444443 4577899999999988877777776667778888887654
No 496
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=26.39 E-value=8.2e+02 Score=26.15 Aligned_cols=81 Identities=11% Similarity=0.033 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--H---hHHHHHHHHHHhCCCCCCHHHHH
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL--Q---GKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~---~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
....++++.. ++.+|++.|+..+.+|++.|..|....-..++.+....|. . ..|...+......|++--.....
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~la 337 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLA 337 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHH
Confidence 3344444443 3457899999999999988877766555555555544453 2 23444455555566443333333
Q ss_pred HHHHHHh
Q 010807 365 CIITMYG 371 (500)
Q Consensus 365 ~li~~~~ 371 (500)
.....++
T Consensus 338 q~~~~la 344 (725)
T PRK13341 338 QAALYLA 344 (725)
T ss_pred HHHHHHH
Confidence 3333333
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.29 E-value=2.8e+02 Score=20.69 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
.+.+++....+....+-....|.-.|.+.|+.+.+.+-|+. ++.+-|.+.+|...+..-
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet--EKalFPES~~fmDFLmk~ 115 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET--EKALFPESGVFMDFLMKN 115 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH--hhhhCccchhHHHHHHHc
Confidence 34445554444222223334455567777777777766653 345667777776666543
No 498
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.15 E-value=5.5e+02 Score=24.04 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=25.3
Q ss_pred hccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+.|++.+|.+.|+++.+.-.-. -..+...|+.++....-+.....++.+--
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666666666655431100 01123345555555555555555544433
No 499
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.05 E-value=8.2e+02 Score=26.04 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=89.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 227 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 227 (500)
-|+.+.+.+.+++|+++-+.... ..| -...+..+|..+. ..|++++|-...-.|.. -+..-|.-.+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl----~~~~y~~Aas~~p~m~g-----n~~~eWe~~V 430 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLL----FEGKYDEAASLCPKMLG-----NNAAEWELWV 430 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHH----hcchHHHHHhhhHHHhc-----chHHHHHHHH
Confidence 35566777888888887766543 234 3456777788887 77888888888888874 3566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH--------------H---hCCCCCCH
Q 010807 228 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--------------K---SNQCKPDI 290 (500)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m--------------~---~~~~~~~~ 290 (500)
..+...++......++ .......+...|..++-.+.. .+...-.++..+- . +..-. +.
T Consensus 431 ~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~ 505 (846)
T KOG2066|consen 431 FKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-ST 505 (846)
T ss_pred HHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-ch
Confidence 7777666655433332 222222455667666666655 2222222221110 0 00011 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 291 ITFNLLIDSYGKRQAFDKMEQVFKSLM 317 (500)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (500)
..-..|...|...+++..|.+++-...
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 334457788888889998888876553
No 500
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.92 E-value=9.9e+02 Score=26.94 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESIL--APD-IYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
-|...++.+-+.+..+.+.++-...++.-. .|. ..+++++.+.....|.+-+|...+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 355666666666776666666555544311 111 234556666666666666665444
Done!