Query 010807
Match_columns 500
No_of_seqs 680 out of 2981
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 14:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-33 7E-38 286.8 33.8 404 72-486 96-571 (597)
2 4g26_A Pentatricopeptide repea 100.0 3.3E-32 1.1E-36 267.5 24.7 205 238-442 8-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.4E-30 4.8E-35 265.8 36.0 361 111-487 119-538 (597)
4 4g26_A Pentatricopeptide repea 100.0 7.8E-32 2.7E-36 264.8 25.2 208 201-409 7-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-25 1.8E-29 212.0 45.0 371 73-476 12-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.1E-25 2.1E-29 211.6 41.1 352 118-485 8-359 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.5E-26 191.5 38.4 354 113-482 30-442 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.7E-26 192.6 36.1 311 142-467 23-364 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.7E-20 9.3E-25 185.8 37.8 368 73-467 19-484 (514)
10 2gw1_A Mitochondrial precursor 99.9 3.9E-20 1.3E-24 184.7 33.8 356 115-484 12-468 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 1.5E-18 5E-23 164.5 39.6 301 147-459 5-335 (359)
12 3ieg_A DNAJ homolog subfamily 99.9 2.7E-18 9.4E-23 162.6 39.3 313 113-441 7-351 (359)
13 3fp2_A TPR repeat-containing p 99.9 2.4E-18 8.1E-23 172.8 38.6 337 114-460 64-492 (537)
14 3fp2_A TPR repeat-containing p 99.8 9.8E-18 3.4E-22 168.3 36.6 356 114-483 30-480 (537)
15 3hym_B Cell division cycle pro 99.8 2.9E-18 1E-22 160.5 30.6 293 142-446 19-321 (330)
16 3hym_B Cell division cycle pro 99.8 3E-18 1E-22 160.5 29.1 291 177-480 19-320 (330)
17 1fch_A Peroxisomal targeting s 99.8 2.8E-18 9.6E-23 163.5 23.2 279 146-454 65-354 (368)
18 1fch_A Peroxisomal targeting s 99.8 3.6E-18 1.2E-22 162.7 22.5 288 197-489 38-354 (368)
19 2xm6_A Protein corresponding t 99.8 1.3E-14 4.4E-19 143.8 47.3 330 104-462 70-435 (490)
20 2xm6_A Protein corresponding t 99.8 2.2E-14 7.7E-19 142.1 47.9 310 122-460 56-397 (490)
21 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.6E-22 158.7 23.6 264 183-455 68-352 (365)
22 4eqf_A PEX5-related protein; a 99.8 2.7E-17 9.1E-22 156.6 20.9 268 144-420 64-352 (365)
23 3cv0_A Peroxisome targeting si 99.8 8.9E-17 3E-21 150.2 24.1 276 147-455 23-311 (327)
24 3cv0_A Peroxisome targeting si 99.8 1.3E-16 4.5E-21 149.0 24.8 259 221-485 22-306 (327)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-18 3.8E-23 176.4 10.3 117 220-336 127-247 (1134)
26 3mkr_A Coatomer subunit epsilo 99.8 3.2E-16 1.1E-20 143.7 24.9 249 155-424 9-264 (291)
27 3spa_A Mtrpol, DNA-directed RN 99.8 2.8E-18 9.5E-23 173.6 12.0 153 324-481 126-288 (1134)
28 1b89_A Protein (clathrin heavy 99.7 9.8E-18 3.4E-22 157.4 13.4 282 121-452 15-304 (449)
29 2ooe_A Cleavage stimulation fa 99.7 3E-14 1E-18 142.7 36.3 211 273-488 256-486 (530)
30 3mkr_A Coatomer subunit epsilo 99.7 2.7E-15 9.3E-20 137.5 25.4 252 196-466 11-269 (291)
31 2ooe_A Cleavage stimulation fa 99.7 4.8E-13 1.6E-17 133.9 41.5 383 73-459 25-492 (530)
32 3uq3_A Heat shock protein STI1 99.7 9.3E-15 3.2E-19 131.4 25.5 241 220-474 5-255 (258)
33 1b89_A Protein (clathrin heavy 99.7 1.4E-16 4.7E-21 149.7 13.4 249 157-453 15-263 (449)
34 4g1t_A Interferon-induced prot 99.7 3E-14 1E-18 140.4 29.3 343 117-467 59-468 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.8E-12 6.2E-17 135.8 41.2 319 104-477 980-1326(1630)
36 2pl2_A Hypothetical conserved 99.7 1.7E-14 5.9E-19 126.2 21.3 197 218-420 3-210 (217)
37 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.6E-19 125.9 21.0 200 252-457 2-212 (217)
38 1ouv_A Conserved hypothetical 99.6 6.8E-13 2.3E-17 120.5 31.9 225 218-460 4-252 (273)
39 3uq3_A Heat shock protein STI1 99.6 2.5E-14 8.4E-19 128.6 21.8 226 145-388 5-235 (258)
40 1xi4_A Clathrin heavy chain; a 99.6 3.9E-12 1.3E-16 133.3 39.1 312 112-482 1052-1372(1630)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-14 7.1E-19 130.5 19.9 248 196-453 17-269 (275)
42 2vq2_A PILW, putative fimbrial 99.6 4.6E-13 1.6E-17 117.5 25.9 202 219-423 7-210 (225)
43 1ouv_A Conserved hypothetical 99.6 2E-12 6.8E-17 117.4 31.0 211 196-425 18-252 (273)
44 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 120.1 26.2 201 220-424 37-238 (252)
45 2ho1_A Type 4 fimbrial biogene 99.6 6.1E-13 2.1E-17 119.2 26.0 210 255-470 37-247 (252)
46 3u4t_A TPR repeat-containing p 99.6 3.9E-13 1.3E-17 121.9 24.5 245 222-472 5-261 (272)
47 2h6f_A Protein farnesyltransfe 99.6 6.2E-13 2.1E-17 126.0 26.4 230 220-456 97-344 (382)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-13 5.1E-18 122.3 20.8 201 219-424 22-222 (243)
49 4g1t_A Interferon-induced prot 99.6 3.4E-12 1.1E-16 125.7 32.4 308 143-459 49-401 (472)
50 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.7E-17 114.4 26.4 214 254-472 7-222 (225)
51 3u4t_A TPR repeat-containing p 99.6 4.1E-13 1.4E-17 121.8 21.7 222 198-424 17-250 (272)
52 2h6f_A Protein farnesyltransfe 99.6 5.3E-13 1.8E-17 126.5 23.1 149 144-302 96-246 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-13 1.2E-17 119.8 20.4 202 253-459 21-222 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-13 7.5E-18 123.7 17.9 224 120-354 16-244 (275)
55 3ulq_A Response regulator aspa 99.5 1.7E-12 5.9E-17 124.1 22.3 296 155-458 22-367 (383)
56 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4E-17 127.9 20.1 224 222-461 143-389 (452)
57 4a1s_A PINS, partner of inscut 99.5 5.7E-13 1.9E-17 128.7 17.5 269 149-423 52-371 (411)
58 2ond_A Cleavage stimulation fa 99.5 4.5E-11 1.5E-15 110.5 29.6 219 237-459 33-270 (308)
59 3sf4_A G-protein-signaling mod 99.5 6.6E-13 2.2E-17 127.8 17.1 299 143-446 7-363 (406)
60 3sf4_A G-protein-signaling mod 99.5 9.2E-13 3.1E-17 126.8 17.2 298 178-481 7-363 (406)
61 4a1s_A PINS, partner of inscut 99.5 4E-13 1.4E-17 129.8 14.6 269 185-459 53-372 (411)
62 4abn_A Tetratricopeptide repea 99.5 3.8E-12 1.3E-16 125.1 21.1 214 197-418 81-315 (474)
63 3vtx_A MAMA; tetratricopeptide 99.5 1.7E-11 5.7E-16 104.0 22.4 167 289-459 4-170 (184)
64 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-11 9.5E-16 118.2 26.5 238 199-458 160-420 (452)
65 4abn_A Tetratricopeptide repea 99.5 4.3E-12 1.5E-16 124.7 20.5 216 235-456 83-318 (474)
66 3nf1_A KLC 1, kinesin light ch 99.5 9.8E-13 3.4E-17 121.6 15.1 241 217-458 24-306 (311)
67 3vtx_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 102.4 22.6 163 257-423 7-169 (184)
68 3ro2_A PINS homolog, G-protein 99.4 1.3E-12 4.5E-17 121.9 15.0 275 148-459 8-332 (338)
69 2ond_A Cleavage stimulation fa 99.4 7.3E-11 2.5E-15 109.1 26.4 218 201-424 33-270 (308)
70 3ro2_A PINS homolog, G-protein 99.4 3.4E-12 1.2E-16 119.1 16.7 263 222-485 7-323 (338)
71 3ulq_A Response regulator aspa 99.4 1.3E-11 4.5E-16 118.0 19.7 295 121-423 24-367 (383)
72 3q15_A PSP28, response regulat 99.4 1.1E-10 3.8E-15 111.3 25.4 311 142-458 7-364 (378)
73 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.3E-17 120.9 9.8 247 144-423 26-306 (311)
74 1hz4_A MALT regulatory protein 99.3 7.1E-10 2.4E-14 105.4 26.0 272 148-423 17-321 (373)
75 3as5_A MAMA; tetratricopeptide 99.3 2.3E-10 7.8E-15 96.6 20.2 163 292-458 10-172 (186)
76 3q15_A PSP28, response regulat 99.3 3.1E-10 1E-14 108.2 22.1 225 196-423 113-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 4.3E-10 1.5E-14 94.9 19.9 127 293-422 45-171 (186)
78 4e6h_A MRNA 3'-END-processing 99.3 4.3E-08 1.5E-12 99.2 37.6 394 75-475 48-584 (679)
79 4gyw_A UDP-N-acetylglucosamine 99.3 2.3E-10 7.8E-15 117.1 21.2 163 256-422 10-172 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.6E-10 5.5E-15 118.3 20.1 166 289-458 8-173 (723)
81 4e6h_A MRNA 3'-END-processing 99.3 1.2E-08 4E-13 103.4 33.1 379 105-488 62-564 (679)
82 1hz4_A MALT regulatory protein 99.3 1.8E-09 6.1E-14 102.6 26.0 285 196-481 26-352 (373)
83 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.6E-14 95.1 21.5 206 218-436 5-220 (228)
84 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.2E-14 95.9 20.5 208 253-473 5-221 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.3E-10 4.5E-15 105.4 13.2 229 231-459 12-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.4E-15 104.9 13.4 226 197-424 21-281 (283)
87 1qqe_A Vesicular transport pro 99.1 3.8E-09 1.3E-13 96.7 19.4 176 197-388 30-227 (292)
88 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 95.9 16.7 212 235-465 32-273 (292)
89 2fo7_A Synthetic consensus TPR 99.0 1.5E-08 5.1E-13 80.1 17.1 128 328-458 4-131 (136)
90 2fo7_A Synthetic consensus TPR 99.0 2.5E-08 8.6E-13 78.8 17.4 128 223-353 4-131 (136)
91 3rjv_A Putative SEL1 repeat pr 99.0 6.6E-08 2.2E-12 83.7 21.1 176 274-461 5-199 (212)
92 3mv2_B Coatomer subunit epsilo 99.0 4.3E-08 1.5E-12 88.3 20.0 178 274-458 85-281 (310)
93 3qky_A Outer membrane assembly 99.0 2E-08 7E-13 90.1 18.1 210 217-448 12-250 (261)
94 3urz_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 86.8 17.2 131 296-432 60-192 (208)
95 3qky_A Outer membrane assembly 99.0 1.4E-08 4.7E-13 91.2 16.9 185 254-459 14-224 (261)
96 3urz_A Uncharacterized protein 99.0 2.6E-08 9E-13 86.0 17.1 173 223-402 7-197 (208)
97 2uy1_A Cleavage stimulation fa 99.0 4.2E-06 1.4E-10 82.1 34.7 224 237-478 196-449 (493)
98 3dra_A Protein farnesyltransfe 98.9 1.1E-06 3.6E-11 80.0 27.0 221 234-459 47-287 (306)
99 3mv2_B Coatomer subunit epsilo 98.9 5.1E-07 1.7E-11 81.3 24.5 230 229-480 22-270 (310)
100 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.5E-12 81.2 20.7 176 202-390 4-198 (212)
101 2pzi_A Probable serine/threoni 98.9 7.4E-09 2.5E-13 106.3 14.1 173 266-445 402-583 (681)
102 4ga2_A E3 SUMO-protein ligase 98.9 9E-09 3.1E-13 83.7 11.6 146 296-445 3-149 (150)
103 2pzi_A Probable serine/threoni 98.9 1.4E-08 4.9E-13 104.2 15.6 174 231-410 402-583 (681)
104 2r5s_A Uncharacterized protein 98.9 2.6E-08 9.1E-13 83.4 13.7 156 262-421 13-170 (176)
105 2vsy_A XCC0866; transferase, g 98.9 8.1E-08 2.8E-12 96.7 18.5 154 268-425 2-158 (568)
106 3qou_A Protein YBBN; thioredox 98.9 7.8E-08 2.7E-12 87.5 16.6 163 256-422 118-282 (287)
107 2vsy_A XCC0866; transferase, g 98.9 6.5E-08 2.2E-12 97.4 17.4 156 233-392 2-160 (568)
108 4ga2_A E3 SUMO-protein ligase 98.8 4E-08 1.4E-12 79.8 12.8 140 196-340 9-149 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.1E-07 1E-11 80.3 19.4 201 220-459 4-213 (225)
110 2r5s_A Uncharacterized protein 98.8 4.4E-08 1.5E-12 82.0 13.3 162 112-282 9-171 (176)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 2.5E-07 8.7E-12 85.1 19.6 184 264-452 45-254 (307)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 4E-07 1.4E-11 79.5 19.8 207 179-425 3-214 (225)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.5E-12 87.8 16.5 218 196-416 3-253 (307)
114 3dra_A Protein farnesyltransfe 98.8 2.3E-06 7.7E-11 77.8 24.0 232 115-388 38-286 (306)
115 3u3w_A Transcriptional activat 98.8 1.9E-06 6.5E-11 78.6 23.8 162 261-422 81-264 (293)
116 3u3w_A Transcriptional activat 98.8 1.3E-06 4.5E-11 79.6 22.6 165 294-458 79-265 (293)
117 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.9E-12 85.3 16.3 165 219-387 116-282 (287)
118 3q7a_A Farnesyltransferase alp 98.7 1.8E-05 6E-10 72.8 27.7 223 232-459 66-331 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 3.9E-11 75.6 19.2 128 292-424 8-150 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 3.2E-06 1.1E-10 77.0 22.2 166 292-457 77-264 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.4E-06 4.7E-11 75.2 18.0 123 263-390 14-151 (213)
122 2uy1_A Cleavage stimulation fa 98.7 8.9E-06 3E-10 79.7 25.5 317 123-456 28-380 (493)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 4.1E-06 1.4E-10 76.3 21.6 167 257-423 77-265 (293)
124 1a17_A Serine/threonine protei 98.6 1.6E-06 5.4E-11 71.2 16.7 129 326-457 14-144 (166)
125 4gco_A Protein STI-1; structur 98.6 1.5E-06 5E-11 68.0 14.4 92 330-423 18-109 (126)
126 3gw4_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 77.4 12.5 157 302-459 4-176 (203)
127 1a17_A Serine/threonine protei 98.6 1.9E-06 6.5E-11 70.7 15.8 129 291-422 14-144 (166)
128 4gco_A Protein STI-1; structur 98.6 1.8E-06 6E-11 67.6 14.5 97 221-319 14-110 (126)
129 1na0_A Designed protein CTPR3; 98.6 3.5E-06 1.2E-10 65.1 15.8 96 326-423 10-105 (125)
130 3gw4_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 76.6 12.4 155 268-423 5-175 (203)
131 3q7a_A Farnesyltransferase alp 98.6 3.5E-05 1.2E-09 70.8 24.5 138 122-269 67-215 (349)
132 2c2l_A CHIP, carboxy terminus 98.6 6.6E-07 2.3E-11 81.1 13.0 195 219-423 3-198 (281)
133 3gyz_A Chaperone protein IPGC; 98.6 3.6E-06 1.2E-10 68.0 15.8 98 325-424 36-133 (151)
134 1na0_A Designed protein CTPR3; 98.5 3.6E-06 1.2E-10 65.1 15.4 113 220-335 9-121 (125)
135 2c2l_A CHIP, carboxy terminus 98.5 8.2E-07 2.8E-11 80.5 12.7 194 254-459 3-199 (281)
136 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 66.4 14.4 117 324-443 15-131 (133)
137 2vyi_A SGTA protein; chaperone 98.5 4.5E-06 1.5E-10 65.1 14.8 94 293-388 15-108 (131)
138 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 66.4 13.9 118 217-337 13-130 (133)
139 2vyi_A SGTA protein; chaperone 98.5 3.8E-06 1.3E-10 65.5 14.3 119 219-340 11-129 (131)
140 3gyz_A Chaperone protein IPGC; 98.5 4.1E-06 1.4E-10 67.7 14.6 103 360-466 36-138 (151)
141 2e2e_A Formate-dependent nitri 98.5 9.6E-07 3.3E-11 73.7 11.2 120 302-424 22-144 (177)
142 1p5q_A FKBP52, FK506-binding p 98.5 4.9E-06 1.7E-10 77.4 16.6 138 289-449 146-283 (336)
143 1p5q_A FKBP52, FK506-binding p 98.5 3.2E-06 1.1E-10 78.7 15.2 145 254-421 146-291 (336)
144 4f3v_A ESX-1 secretion system 98.5 1.6E-06 5.4E-11 77.0 12.0 187 121-319 18-237 (282)
145 2e2e_A Formate-dependent nitri 98.4 5.3E-06 1.8E-10 69.1 14.8 122 336-460 21-145 (177)
146 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.8E-11 69.9 11.0 96 326-423 22-117 (148)
147 4f3v_A ESX-1 secretion system 98.4 7E-06 2.4E-10 72.9 15.6 126 296-424 108-237 (282)
148 3dss_A Geranylgeranyl transfer 98.4 0.00015 5.2E-09 66.2 23.9 182 271-459 90-304 (331)
149 2fbn_A 70 kDa peptidylprolyl i 98.4 6.1E-07 2.1E-11 76.5 7.6 87 362-450 90-176 (198)
150 2vgx_A Chaperone SYCD; alterna 98.4 1.9E-06 6.5E-11 69.5 9.8 98 219-318 20-117 (148)
151 3upv_A Heat shock protein STI1 98.4 7.5E-06 2.6E-10 63.8 12.6 95 362-458 6-100 (126)
152 4gcn_A Protein STI-1; structur 98.3 9.9E-06 3.4E-10 63.3 13.2 96 362-458 10-111 (127)
153 4gcn_A Protein STI-1; structur 98.3 1E-05 3.5E-10 63.2 13.1 102 328-432 11-118 (127)
154 4b4t_Q 26S proteasome regulato 98.3 3.5E-05 1.2E-09 74.4 19.6 24 223-246 58-81 (434)
155 1elw_A TPR1-domain of HOP; HOP 98.3 2.8E-05 9.6E-10 59.1 15.2 97 221-319 5-101 (118)
156 1elw_A TPR1-domain of HOP; HOP 98.3 3E-05 1E-09 59.0 15.2 94 328-423 7-100 (118)
157 3upv_A Heat shock protein STI1 98.3 2E-05 6.8E-10 61.3 14.3 97 326-424 5-101 (126)
158 4b4t_Q 26S proteasome regulato 98.3 3.4E-05 1.2E-09 74.5 18.7 202 114-318 9-244 (434)
159 3dss_A Geranylgeranyl transfer 98.3 0.0022 7.6E-08 58.5 28.9 173 158-337 42-239 (331)
160 2xcb_A PCRH, regulatory protei 98.3 1.4E-05 4.8E-10 63.8 12.6 96 326-423 19-114 (142)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 2.3E-05 7.8E-10 66.6 14.7 159 263-424 12-186 (198)
162 3q49_B STIP1 homology and U bo 98.3 2.7E-05 9.2E-10 61.4 14.2 97 324-422 8-104 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 2.2E-05 7.4E-10 64.4 13.6 99 324-424 10-108 (164)
164 2xcb_A PCRH, regulatory protei 98.2 9.9E-06 3.4E-10 64.7 11.2 97 220-318 18-114 (142)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 2.3E-05 7.9E-10 64.3 13.0 100 218-319 9-108 (164)
166 2kck_A TPR repeat; tetratricop 98.2 2.3E-05 7.8E-10 59.1 11.9 93 329-423 10-105 (112)
167 3q49_B STIP1 homology and U bo 98.2 3.9E-05 1.3E-09 60.4 13.8 99 218-318 7-105 (137)
168 2dba_A Smooth muscle cell asso 98.2 8.7E-05 3E-09 59.2 15.9 96 360-458 28-127 (148)
169 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.5E-10 61.5 11.5 94 329-423 8-107 (131)
170 2kck_A TPR repeat; tetratricop 98.2 2.5E-05 8.7E-10 58.8 11.8 100 220-320 6-107 (112)
171 1elr_A TPR2A-domain of HOP; HO 98.2 2E-05 6.8E-10 61.3 11.2 97 221-318 5-107 (131)
172 2dba_A Smooth muscle cell asso 98.2 9.2E-05 3.1E-09 59.0 15.4 94 292-388 30-127 (148)
173 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 4.8E-10 64.9 9.7 26 432-457 131-156 (164)
174 1hxi_A PEX5, peroxisome target 98.1 3.3E-05 1.1E-09 59.7 11.2 90 366-457 23-112 (121)
175 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.8E-10 63.9 10.5 134 290-423 9-157 (164)
176 1hxi_A PEX5, peroxisome target 98.1 3.8E-05 1.3E-09 59.3 11.1 95 328-424 20-114 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.7E-05 2.3E-09 73.0 14.4 146 289-457 267-413 (457)
178 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.9E-10 61.3 7.5 84 374-458 4-89 (117)
179 1wao_1 Serine/threonine protei 98.0 3.6E-05 1.2E-09 75.3 12.0 120 227-349 13-134 (477)
180 2xev_A YBGF; tetratricopeptide 98.0 0.00017 5.8E-09 56.0 13.7 89 368-458 10-104 (129)
181 1wao_1 Serine/threonine protei 98.0 2.6E-05 8.8E-10 76.3 10.8 121 296-419 12-134 (477)
182 1klx_A Cysteine rich protein B 98.0 0.00047 1.6E-08 54.5 15.6 112 339-461 9-128 (138)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00012 4.2E-09 71.1 14.4 122 220-343 268-403 (457)
184 2hr2_A Hypothetical protein; a 97.9 0.00029 9.8E-09 56.4 13.9 109 364-472 15-149 (159)
185 2xev_A YBGF; tetratricopeptide 97.9 0.00029 9.9E-09 54.6 13.9 92 331-424 8-105 (129)
186 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.7E-09 68.5 13.4 90 360-451 273-362 (370)
187 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.7E-09 67.9 13.1 137 222-380 225-361 (370)
188 3rkv_A Putative peptidylprolyl 97.9 0.00019 6.5E-09 58.5 12.0 63 361-424 64-126 (162)
189 3k9i_A BH0479 protein; putativ 97.9 4.5E-05 1.6E-09 58.4 7.7 84 304-388 4-89 (117)
190 3rkv_A Putative peptidylprolyl 97.8 0.00011 3.7E-09 60.0 10.3 98 292-390 13-127 (162)
191 1dce_A Protein (RAB geranylger 97.8 0.00094 3.2E-08 66.5 18.8 173 236-413 45-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 7E-05 2.4E-09 69.6 9.9 60 363-423 233-292 (338)
193 3n71_A Histone lysine methyltr 97.8 0.0001 3.4E-09 71.8 10.8 125 335-459 319-464 (490)
194 3n71_A Histone lysine methyltr 97.8 6.8E-05 2.3E-09 72.9 9.4 125 299-423 318-463 (490)
195 1klx_A Cysteine rich protein B 97.8 0.001 3.4E-08 52.6 14.7 88 332-425 32-127 (138)
196 1dce_A Protein (RAB geranylger 97.8 0.0012 4.2E-08 65.7 18.5 170 271-445 45-241 (567)
197 2if4_A ATFKBP42; FKBP-like, al 97.8 8.6E-05 2.9E-09 69.0 9.3 132 289-424 178-328 (338)
198 2hr2_A Hypothetical protein; a 97.7 0.00068 2.3E-08 54.3 11.9 62 222-283 13-85 (159)
199 2l6j_A TPR repeat-containing p 97.5 9.8E-05 3.4E-09 55.6 5.3 63 361-424 5-67 (111)
200 2l6j_A TPR repeat-containing p 97.5 0.00016 5.4E-09 54.4 5.9 93 325-419 4-102 (111)
201 1na3_A Designed protein CTPR2; 97.4 0.0017 5.7E-08 46.5 10.7 78 361-440 10-87 (91)
202 2kat_A Uncharacterized protein 97.4 0.0018 6.1E-08 49.0 11.0 79 343-423 3-81 (115)
203 2kat_A Uncharacterized protein 97.4 0.00083 2.8E-08 50.9 8.8 78 309-388 4-81 (115)
204 3ma5_A Tetratricopeptide repea 97.3 0.00085 2.9E-08 49.4 7.9 64 359-423 6-69 (100)
205 1na3_A Designed protein CTPR2; 97.3 0.003 1E-07 45.0 10.7 80 326-407 10-89 (91)
206 1zu2_A Mitochondrial import re 97.3 0.00053 1.8E-08 54.8 6.9 86 337-424 14-120 (158)
207 1zu2_A Mitochondrial import re 97.2 0.0016 5.4E-08 52.0 8.7 70 196-268 14-93 (158)
208 3ma5_A Tetratricopeptide repea 97.0 0.0052 1.8E-07 45.1 9.0 65 218-283 5-69 (100)
209 3qww_A SET and MYND domain-con 96.9 0.0054 1.9E-07 58.5 10.6 85 338-422 311-409 (433)
210 3qww_A SET and MYND domain-con 96.9 0.0039 1.3E-07 59.5 9.6 87 372-458 310-410 (433)
211 3qwp_A SET and MYND domain-con 96.8 0.012 4E-07 56.3 12.4 90 333-422 295-398 (429)
212 3ly7_A Transcriptional activat 96.7 0.044 1.5E-06 50.3 14.9 63 289-353 276-338 (372)
213 3ly7_A Transcriptional activat 96.7 0.25 8.7E-06 45.3 19.7 73 217-293 274-346 (372)
214 3qwp_A SET and MYND domain-con 96.7 0.011 3.7E-07 56.5 11.0 106 367-472 294-416 (429)
215 3mkq_A Coatomer beta'-subunit; 96.6 0.031 1.1E-06 58.4 14.9 157 115-316 605-762 (814)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.17 5.6E-06 52.8 19.0 152 230-420 609-761 (814)
217 2kc7_A BFR218_protein; tetratr 96.2 0.013 4.5E-07 42.5 7.0 56 368-424 8-64 (99)
218 3bee_A Putative YFRE protein; 96.2 0.11 3.8E-06 37.2 11.4 65 394-459 5-72 (93)
219 2kc7_A BFR218_protein; tetratr 96.1 0.017 6E-07 41.8 7.2 57 333-390 8-65 (99)
220 1pc2_A Mitochondria fission pr 95.8 0.08 2.7E-06 41.7 9.7 80 343-424 16-100 (152)
221 3bee_A Putative YFRE protein; 95.6 0.11 3.7E-06 37.3 9.4 66 358-424 4-72 (93)
222 3mkq_B Coatomer subunit alpha; 95.6 0.34 1.2E-05 39.2 13.1 45 266-316 16-60 (177)
223 1wy6_A Hypothetical protein ST 95.6 0.54 1.9E-05 35.8 13.6 60 260-320 96-155 (172)
224 1pc2_A Mitochondria fission pr 95.5 0.12 4.1E-06 40.7 9.8 83 375-459 13-100 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.17 5.7E-06 37.2 10.0 66 359-424 4-75 (104)
226 3u64_A Protein TP_0956; tetrat 95.3 0.41 1.4E-05 42.2 13.5 97 196-295 175-282 (301)
227 3mkq_B Coatomer subunit alpha; 95.3 0.9 3.1E-05 36.7 16.4 127 300-456 15-141 (177)
228 1wy6_A Hypothetical protein ST 95.2 0.77 2.6E-05 35.0 13.4 63 327-390 93-155 (172)
229 3u64_A Protein TP_0956; tetrat 95.1 0.15 5.1E-06 44.9 10.2 83 343-427 181-272 (301)
230 2v5f_A Prolyl 4-hydroxylase su 95.0 0.28 9.6E-06 35.9 10.2 66 219-284 4-75 (104)
231 4h7y_A Dual specificity protei 94.0 0.27 9.1E-06 38.3 8.0 102 324-427 12-126 (161)
232 2ff4_A Probable regulatory pro 94.0 1.2 4.2E-05 41.6 14.5 71 112-184 174-249 (388)
233 4h7y_A Dual specificity protei 93.3 0.55 1.9E-05 36.6 8.6 115 358-475 11-138 (161)
234 1nzn_A CGI-135 protein, fissio 93.0 0.5 1.7E-05 35.7 8.0 65 393-458 33-102 (126)
235 4b4t_P 26S proteasome regulato 92.9 6.7 0.00023 37.3 21.0 258 198-455 30-320 (445)
236 2ff4_A Probable regulatory pro 92.8 0.48 1.6E-05 44.4 9.5 68 399-467 175-247 (388)
237 4b4t_P 26S proteasome regulato 92.6 3.4 0.00012 39.4 15.3 187 234-422 30-245 (445)
238 1nzn_A CGI-135 protein, fissio 92.6 1.2 4.2E-05 33.6 9.6 87 159-249 15-103 (126)
239 4gns_B Protein CSD3, chitin bi 91.1 0.92 3.2E-05 46.1 9.8 51 427-479 610-660 (754)
240 4gns_B Protein CSD3, chitin bi 90.7 1.3 4.3E-05 45.2 10.4 50 370-420 347-396 (754)
241 4ady_A RPN2, 26S proteasome re 90.3 19 0.00066 37.5 29.2 246 228-483 419-679 (963)
242 4fhn_B Nucleoporin NUP120; pro 88.3 12 0.00041 40.6 16.4 21 260-280 847-867 (1139)
243 1v54_E Cytochrome C oxidase po 87.5 5.7 0.0002 28.4 8.7 48 341-388 26-73 (109)
244 4fhn_B Nucleoporin NUP120; pro 86.4 27 0.00092 37.9 17.8 145 296-448 818-989 (1139)
245 1zbp_A Hypothetical protein VP 86.4 16 0.00054 31.7 12.9 121 117-248 5-128 (273)
246 3lvg_A Clathrin heavy chain 1; 85.0 0.00021 7.2E-09 67.0 -19.2 219 92-347 66-284 (624)
247 1qsa_A Protein (soluble lytic 84.8 33 0.0011 34.1 23.5 309 119-458 16-347 (618)
248 2y69_E Cytochrome C oxidase su 83.6 9.3 0.00032 29.0 8.7 61 341-402 69-129 (152)
249 1v54_E Cytochrome C oxidase po 83.5 10 0.00035 27.2 9.1 49 411-459 26-74 (109)
250 4ady_A RPN2, 26S proteasome re 82.0 53 0.0018 34.3 23.3 154 265-423 500-657 (963)
251 3o48_A Mitochondria fission 1 81.5 15 0.00052 27.8 9.7 71 177-249 37-107 (134)
252 2y69_E Cytochrome C oxidase su 81.0 13 0.00045 28.2 8.6 59 273-332 71-129 (152)
253 4b4t_R RPN7, 26S proteasome re 80.6 8.7 0.0003 36.3 9.9 62 327-388 133-196 (429)
254 3eiq_C Programmed cell death p 79.8 29 0.00099 31.6 12.5 72 362-434 219-292 (358)
255 3lvg_A Clathrin heavy chain 1; 79.3 0.00044 1.5E-08 64.8 -19.2 243 180-455 54-316 (624)
256 3txn_A 26S proteasome regulato 77.6 45 0.0015 30.9 22.2 164 223-387 22-208 (394)
257 1zbp_A Hypothetical protein VP 76.8 7 0.00024 33.9 7.1 56 368-424 5-60 (273)
258 4b4t_R RPN7, 26S proteasome re 76.1 11 0.00036 35.7 9.0 118 271-388 110-236 (429)
259 1y8m_A FIS1; mitochondria, unk 75.8 25 0.00085 27.1 11.1 67 358-424 37-106 (144)
260 3o48_A Mitochondria fission 1 74.9 25 0.00086 26.7 10.8 65 393-457 38-105 (134)
261 2p58_C Putative type III secre 74.4 21 0.00071 25.5 7.8 50 370-425 50-99 (116)
262 1y8m_A FIS1; mitochondria, unk 74.2 28 0.00094 26.8 11.6 68 392-459 36-106 (144)
263 3eiq_C Programmed cell death p 74.2 52 0.0018 30.0 12.6 78 397-475 219-298 (358)
264 2p58_C Putative type III secre 74.2 21 0.00072 25.5 8.0 80 373-460 20-99 (116)
265 2uwj_G Type III export protein 72.1 20 0.0007 25.5 7.1 49 405-459 49-97 (115)
266 2uwj_G Type III export protein 72.1 20 0.0007 25.5 7.1 88 339-435 20-107 (115)
267 3ffl_A Anaphase-promoting comp 71.1 25 0.00087 27.8 8.4 20 401-420 128-147 (167)
268 3esl_A Checkpoint serine/threo 71.0 41 0.0014 27.7 9.9 53 341-393 95-148 (202)
269 2wpv_A GET4, UPF0363 protein Y 70.0 60 0.0021 28.9 20.0 81 288-387 132-215 (312)
270 2wpv_A GET4, UPF0363 protein Y 69.0 63 0.0022 28.8 19.5 179 102-317 22-215 (312)
271 3esl_A Checkpoint serine/threo 62.9 62 0.0021 26.6 9.5 54 125-178 95-148 (202)
272 3ffl_A Anaphase-promoting comp 61.8 58 0.002 25.8 10.4 118 112-247 23-149 (167)
273 2nsz_A Programmed cell death p 60.7 49 0.0017 24.9 8.1 64 223-287 10-75 (129)
274 4a1g_A Mitotic checkpoint seri 60.1 31 0.001 26.9 6.9 53 127-179 83-135 (152)
275 2wvi_A Mitotic checkpoint seri 59.5 34 0.0012 27.1 7.2 55 127-181 78-132 (164)
276 2ion_A PDCD4, programmed cell 58.7 61 0.0021 25.2 8.6 24 364-387 13-36 (152)
277 2zu6_B Programmed cell death p 58.1 1E+02 0.0035 27.4 11.9 67 363-430 169-237 (307)
278 3lpz_A GET4 (YOR164C homolog); 56.3 1.1E+02 0.0039 27.4 22.6 188 94-318 13-215 (336)
279 3txn_A 26S proteasome regulato 54.5 1.3E+02 0.0046 27.7 24.1 300 147-460 21-344 (394)
280 4a1g_A Mitotic checkpoint seri 53.6 77 0.0026 24.7 9.6 28 363-390 104-131 (152)
281 2ion_A PDCD4, programmed cell 53.0 42 0.0014 26.2 6.8 64 223-287 12-77 (152)
282 2nsz_A Programmed cell death p 52.3 72 0.0025 24.0 9.9 62 364-426 11-74 (129)
283 2wvi_A Mitotic checkpoint seri 48.6 98 0.0034 24.4 9.7 50 344-393 79-129 (164)
284 4aez_C MAD3, mitotic spindle c 47.3 55 0.0019 27.4 6.8 53 126-178 131-183 (223)
285 3kae_A CDC27, possible protein 45.7 1.1E+02 0.0037 24.4 7.8 26 326-351 115-140 (242)
286 1wdy_A 2-5A-dependent ribonucl 44.5 19 0.00064 31.1 4.0 16 151-166 8-23 (285)
287 1qsa_A Protein (soluble lytic 43.3 2.6E+02 0.0088 27.7 30.2 115 235-353 229-347 (618)
288 2r9g_A AAA ATPase, central reg 43.3 1.2E+02 0.0042 24.7 8.1 54 372-426 26-84 (204)
289 2d2s_A Exocyst complex compone 41.8 1.6E+02 0.0054 24.9 9.3 91 330-423 23-119 (235)
290 3kae_A CDC27, possible protein 41.7 1.3E+02 0.0043 24.1 7.6 54 404-457 71-141 (242)
291 3pvs_A Replication-associated 40.3 2E+02 0.0068 27.1 10.6 141 305-462 166-327 (447)
292 3ctd_A Putative ATPase, AAA fa 40.1 1.6E+02 0.0054 24.3 9.8 21 373-393 48-68 (213)
293 3ltm_A Alpha-REP4; protein eng 39.7 1.5E+02 0.0051 24.0 17.6 18 218-235 31-48 (211)
294 1wdy_A 2-5A-dependent ribonucl 39.6 25 0.00087 30.2 4.1 22 407-428 191-212 (285)
295 1k1a_A B-cell lymphoma 3-encod 39.1 51 0.0018 27.4 5.9 28 227-254 13-40 (241)
296 2d2s_A Exocyst complex compone 39.1 1.8E+02 0.006 24.6 11.8 89 151-247 24-118 (235)
297 4aez_C MAD3, mitotic spindle c 38.9 1.4E+02 0.0049 24.9 8.1 51 343-393 132-183 (223)
298 2fe3_A Peroxide operon regulat 37.5 1.4E+02 0.0046 22.9 7.7 42 403-444 29-70 (145)
299 1oai_A Nuclear RNA export fact 37.2 19 0.00064 22.8 2.0 25 122-146 33-57 (59)
300 2yru_A Steroid receptor RNA ac 37.1 1.2E+02 0.0043 22.3 7.4 51 198-249 39-90 (118)
301 2xig_A Ferric uptake regulatio 36.7 1.4E+02 0.0049 22.9 8.5 44 401-444 32-75 (150)
302 3t8k_A Uncharacterized protein 36.0 97 0.0033 24.8 6.9 29 261-289 41-69 (186)
303 2xig_A Ferric uptake regulatio 35.9 1.2E+02 0.0041 23.4 7.0 59 281-340 18-76 (150)
304 2keb_A DNA polymerase subunit 35.8 1.1E+02 0.0039 21.5 6.3 30 344-373 28-57 (101)
305 4gq2_M Nucleoporin NUP120; bet 35.4 3.2E+02 0.011 28.8 12.2 113 113-249 814-926 (950)
306 3eyy_A Putative iron uptake re 35.4 1.1E+02 0.0039 23.3 6.8 34 411-444 33-66 (145)
307 2qx5_A Nucleoporin NIC96; mRNA 35.2 1.8E+02 0.0061 29.1 9.6 93 368-465 451-570 (661)
308 3bge_A Predicted ATPase; struc 34.6 1.3E+02 0.0046 24.5 7.0 32 304-335 21-52 (201)
309 2ijq_A Hypothetical protein; s 34.2 1.7E+02 0.0058 23.0 8.5 70 406-475 43-127 (161)
310 1mzb_A Ferric uptake regulatio 34.0 1.4E+02 0.0049 22.4 7.1 35 376-410 34-68 (136)
311 3mab_A Uncharacterized protein 33.8 53 0.0018 23.1 4.0 51 449-499 36-86 (93)
312 3pvs_A Replication-associated 32.8 3.2E+02 0.011 25.7 12.4 35 303-337 268-302 (447)
313 1bpo_A Protein (clathrin); cla 32.5 3.3E+02 0.011 25.8 11.4 110 79-191 331-440 (494)
314 3bge_A Predicted ATPase; struc 31.8 1.5E+02 0.0052 24.2 6.9 44 366-409 10-56 (201)
315 3l6a_A Eukaryotic translation 31.6 1.6E+02 0.0056 26.8 8.1 24 113-136 16-39 (364)
316 2fe3_A Peroxide operon regulat 31.3 1.5E+02 0.005 22.7 6.8 59 281-340 13-71 (145)
317 3bu8_A Telomeric repeat-bindin 31.0 2.2E+02 0.0075 23.6 7.7 85 75-168 87-171 (235)
318 2w57_A Ferric uptake regulatio 29.4 1.5E+02 0.0053 22.7 6.7 34 377-410 34-67 (150)
319 3t8k_A Uncharacterized protein 29.1 62 0.0021 26.0 4.5 91 196-290 15-109 (186)
320 4ets_A Ferric uptake regulatio 28.8 76 0.0026 24.9 4.8 45 225-269 37-83 (162)
321 1mzb_A Ferric uptake regulatio 28.7 1.4E+02 0.0046 22.5 6.1 59 281-340 9-68 (136)
322 2w57_A Ferric uptake regulatio 27.9 1.5E+02 0.005 22.9 6.2 60 280-340 7-67 (150)
323 2fu4_A Ferric uptake regulatio 26.9 1.4E+02 0.0048 19.8 7.4 9 414-422 36-44 (83)
324 4b4t_S RPN3, 26S proteasome re 26.8 3E+02 0.01 26.5 9.1 129 145-280 231-366 (523)
325 2lwd_A Probable ATP-dependent 25.4 74 0.0025 22.7 3.7 52 105-160 39-90 (100)
326 3eyy_A Putative iron uptake re 25.2 1.2E+02 0.004 23.3 5.2 57 281-339 10-66 (145)
327 2o03_A Probable zinc uptake re 25.1 1.5E+02 0.0051 22.1 5.7 33 408-440 23-55 (131)
328 4ets_A Ferric uptake regulatio 24.9 2.1E+02 0.0072 22.3 6.7 56 388-444 26-83 (162)
329 2qx5_A Nucleoporin NIC96; mRNA 24.5 5.4E+02 0.018 25.7 15.8 43 148-191 155-197 (661)
330 1k1a_A B-cell lymphoma 3-encod 24.0 1E+02 0.0034 25.5 5.2 185 261-464 12-210 (241)
331 3mwm_A ZUR, putative metal upt 23.5 1.3E+02 0.0046 22.7 5.2 33 377-409 30-62 (139)
332 2o03_A Probable zinc uptake re 23.3 1.2E+02 0.0042 22.6 4.9 44 226-269 16-59 (131)
333 3f3f_C Nucleoporin NUP85; stru 23.2 2.7E+02 0.0093 27.1 8.1 53 289-343 515-567 (570)
334 2zu6_B Programmed cell death p 23.1 2.1E+02 0.0072 25.3 7.0 64 223-287 169-234 (307)
335 3ygs_P Procaspase 9; apoptosis 22.8 2E+02 0.0069 20.1 7.3 37 304-344 51-87 (97)
336 1wgl_A TOLL-interacting protei 22.0 1.4E+02 0.0049 18.7 4.1 20 233-252 36-55 (59)
337 3kea_A K1L; tropism, ANK repea 21.9 59 0.002 28.3 3.3 45 227-275 35-79 (285)
338 3ltm_A Alpha-REP4; protein eng 21.3 3.2E+02 0.011 21.9 18.9 111 358-480 93-203 (211)
339 2keb_A DNA polymerase subunit 21.0 2.3E+02 0.0077 20.1 7.5 28 164-191 28-55 (101)
340 1ug3_A EIF4GI, eukaryotic prot 20.8 3.9E+02 0.013 23.8 8.6 25 223-247 14-38 (339)
341 4g8k_A 2-5A-dependent ribonucl 20.7 66 0.0023 28.6 3.4 105 345-465 219-329 (337)
342 1ug3_A EIF4GI, eukaryotic prot 20.4 1.3E+02 0.0044 27.1 5.2 146 182-349 13-165 (339)
343 2cos_A Serine/threonine protei 20.4 1.3E+02 0.0043 18.5 3.4 36 416-456 11-48 (54)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-33 Score=286.76 Aligned_cols=404 Identities=11% Similarity=0.035 Sum_probs=336.8
Q ss_pred CCccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHH-----------------HcccCCHHHHHHHHHH
Q 010807 72 RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEE-----------------LGKSDKWLQCLEVFRW 134 (500)
Q Consensus 72 ~~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-----------------l~~~~~~~~A~~~~~~ 134 (500)
+.+...+|..+++.++...++...+..+...+...++.+.+..+++. +.+.|++++|+++|+.
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 35667889999998887777766666666777777766666555444 4567999999999985
Q ss_pred HHHcc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH---------
Q 010807 135 MQKQR--------------WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAH--------- 190 (500)
Q Consensus 135 ~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~--------- 190 (500)
+.... +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHH
Confidence 32221 123458899999999999999999999999998864 33 33333332111
Q ss_pred -------------------------HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 191 -------------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245 (500)
Q Consensus 191 -------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 245 (500)
+....+.|++++|+++|+++... +++..+|+.++.+|.+.|++++|.++|++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTK 330 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11112789999999999999863 68999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 010807 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325 (500)
Q Consensus 246 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (500)
+.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 331 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 331 ILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 9987654 77889999999999999999999999998654 3478899999999999999999999999998753 3378
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 899999999999999999999999999875 45788999999999999999999999999998753 4789999999999
Q ss_pred HhcCChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 406 CMNGLPTEADLLFENSHNM----GVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+...|...|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 9999999999999999876 66787 7899999999999999999999999999875 447889999999999998
Q ss_pred CCCCCcc
Q 010807 480 AGSQSGS 486 (500)
Q Consensus 480 ~~~~~~~ 486 (500)
+++....
T Consensus 565 ~~~~A~~ 571 (597)
T 2xpi_A 565 IPGLAIT 571 (597)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8765443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-32 Score=267.50 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------HH
Q 010807 238 QVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA---------FD 307 (500)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~~ 307 (500)
.+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666654433 34677777777777777777777777777777777777777777766543 45
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 388 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-30 Score=265.75 Aligned_cols=361 Identities=9% Similarity=-0.021 Sum_probs=281.9
Q ss_pred hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc--------------C
Q 010807 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NS--------------G 175 (500)
Q Consensus 111 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--------------g 175 (500)
....+...+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|+++|+++. .. |
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 3344556666667777777777766442 4567777777777777777777777777422 11 1
Q ss_pred CCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH-----------------------------
Q 010807 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL----------------------------- 226 (500)
Q Consensus 176 ~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----------------------------- 226 (500)
..++..+|+.++.+|. +.|++++|+++|+++.... +.+...+..+
T Consensus 196 ~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYT----NLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cchhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 1234667777777777 5566777777777776532 2223332222
Q ss_pred ---------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 227 ---------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 227 ---------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+.. +..++..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 44455667777777777776654 468888999999999999999999999999876543 677888999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 377 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 377 (500)
.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988653 4478899999999999999999999999998753 446889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|++|.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 3478999999999999999999999999998864 4578999999999999999999999999998
Q ss_pred HC----CCCCC--HHHHHHHHHHHhcCCCCCCCccc
Q 010807 458 QN----GIVPN--KRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 458 ~~----g~~p~--~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
+. +..|+ ..+|..+...|.+.|+.+.....
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 76 77888 78999999999998887654433
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.8e-32 Score=264.81 Aligned_cols=208 Identities=13% Similarity=0.141 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC---------
Q 010807 201 AKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM--------- 270 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--------- 270 (500)
..+..+.+++.+ .+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344555566654 444444 346888999999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
|.+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988643
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.3e-25 Score=212.00 Aligned_cols=371 Identities=12% Similarity=0.043 Sum_probs=311.1
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.|..++|...+..+++..|+....... +...+...|++++|...++...+.. +.+..+|..+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg 74 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLL---------------LSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLG 74 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHH
Confidence 456778888888887776655433322 2233445689999999999988764 67889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (500)
.++.+.|++++|+..|+++.+. .| +...|..+..++. ..|++++|+..|+++.... +.+...+..+...+.
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALV----AAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 9999999999999999999875 35 4567888999998 7888999999999998642 445667888899999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (500)
..|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999886543 6789999999999999999999999999987543 67889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
.|++.....+ .+..++..+..+|...|++++|...++.+.+.. +.+..+|..+...+.+.|++++|.+.|+++.+..
T Consensus 225 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 301 (388)
T 1w3b_A 225 AYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC- 301 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999887643 368899999999999999999999999999864 3457889999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLE 470 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 470 (500)
+.+..+++.+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+. .|+ ...|..
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~ 378 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 378 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHh
Confidence 4578999999999999999999999999998863 446889999999999999999999999999864 454 344544
Q ss_pred HHHHHh
Q 010807 471 ALETFS 476 (500)
Q Consensus 471 ll~~~~ 476 (500)
+-..+.
T Consensus 379 lg~~~~ 384 (388)
T 1w3b_A 379 MGNTLK 384 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.1e-25 Score=211.59 Aligned_cols=352 Identities=9% Similarity=0.008 Sum_probs=305.3
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...+. ..
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~----~~ 80 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK----ER 80 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH----HC
Confidence 3445799999999999998864 5677888889999999999999999999988763 457789999999999 88
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
|++++|+..|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 88999999999998642 456778999999999999999999999999886543 556777888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 357 (500)
|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+..+ .+...|..+...+...|++++|...+++..... +
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 9999887433 678899999999999999999999999998643 368889999999999999999999999998854 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 358 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
.+..++..+...|...|++++|.+.|+++.+.+. .+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 4588999999999999999999999999998753 368899999999999999999999999998874 56889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 010807 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~ 485 (500)
..+.+.|++++|...++++.+.. +.+...+..+...+...|+.+...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998642 345678888899998888765443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.6e-21 Score=191.46 Aligned_cols=354 Identities=14% Similarity=0.076 Sum_probs=282.9
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
..+...+.+.|++++|+.+|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+..++.
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 334555667899999999999998863 5678999999999999999999999999999874 345778888888888
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKPNI---VTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYT 257 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 257 (500)
..|++++|+..|+++.... +.+. ..+..+ ...+...|++++|+..|+++.+.... +..+
T Consensus 106 ---~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 106 ---KQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp ---HTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred ---HcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 7778999999999998632 3334 566555 44489999999999999999886543 7889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM------ 331 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 331 (500)
+..+..+|.+.|++++|.++|+++.+... .+..++..+..+|...|++++|+..|+++...... +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 99999999999999999999999987643 37889999999999999999999999999875332 45555555
Q ss_pred ------HHHHHhcCCHhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 332 ------IINYGKARLQGKAEYVFQKMTAMKYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 332 ------i~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
...|...|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...++++.+.. +.+..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998853 44 4578889999999999999999999998864 347899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHH-HHC--C
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA------------YTKAN-----MKELVQKLLKRM-EQN--G 460 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~a~~~~~~m-~~~--g 460 (500)
+..+|...|++++|...|+++.+.. +-+...+..+..+ |...| +.+++.+.++++ .+. .
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999863 2245666666533 33334 556777777763 332 1
Q ss_pred CCCCH-------HHHHHHHHHHhcCCCCC
Q 010807 461 IVPNK-------RFFLEALETFSSSLAGS 482 (500)
Q Consensus 461 ~~p~~-------~~~~~ll~~~~~~g~~~ 482 (500)
..|+. ..|..+-.+|...++.+
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 12332 36777888887776654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-21 Score=192.63 Aligned_cols=311 Identities=13% Similarity=0.018 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++. ..|++++|+..|+++.... +.+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~ 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIQLK--MDFTA 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--CCcHH
Confidence 5567889999999999999999999999998763 346888888989898 7778999999999998643 55688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
.+..+...|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|+..|+++.+...
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999886432 33 455555 3448899999999999999988643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 366 (500)
.+...+..+..+|.+.|++++|+++|+++.+.. +.+..+|..+...|...|++++|...++.+.... +.+...+..+
T Consensus 175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 175 -WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp -TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 378889999999999999999999999998763 3478999999999999999999999999998753 3345555544
Q ss_pred ------------HHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 367 ------------ITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 367 ------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
...|...|++++|..+|+++.+.... + ...|..+..++.+.|++++|+..++++.... +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 88899999999999999999985422 2 4578899999999999999999999988763 4478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 467 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 467 (500)
..|..+..+|...|++++|...++++.+ +.|+...
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 9999999999999999999999999986 4565433
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-20 Score=185.83 Aligned_cols=368 Identities=9% Similarity=-0.032 Sum_probs=291.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.+...+|...+..++...++. .....+...+.+.|++++|+..|+.+.+.. +.+..+|..+.
T Consensus 19 ~g~~~~A~~~~~~al~~~p~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 80 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELKEDP----------------VFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRA 80 (514)
T ss_dssp TSCHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCccH----------------HHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHH
Confidence 355677777777777665431 112234445556799999999999998874 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPD----------------------------------------------------- 179 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------------------------------------- 179 (500)
.++.+.|++++|...|+++.+.+...+
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999999987642110
Q ss_pred -------------------------HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhc-----CCCC-------CCCHHH
Q 010807 180 -------------------------PSVYNALITAHLHTRDKAKALAKALGYFQKMKG-----MERC-------KPNIVT 222 (500)
Q Consensus 180 -------------------------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~ 222 (500)
...+......+.... ..|++++|+..|+++.. .... +.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR-SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSC-CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111122000 26889999999999876 3111 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
+..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++++.+.... +...+..+..+|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 888999999999999999999999887544 888999999999999999999999999887543 67788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
.|++++|+..|++..+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999887443 67789999999999999999999999998854 34577889999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 383 FDELSKLGKD-MK----VSTLNAMLEAYCM---NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 383 ~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++++.+.... ++ ...+..+..+|.. .|++++|...++++.... +.+..++..+...+.+.|++++|...++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9998874322 11 4488999999999 999999999999998864 4467889999999999999999999999
Q ss_pred HHHHCCCCCCHHH
Q 010807 455 RMEQNGIVPNKRF 467 (500)
Q Consensus 455 ~m~~~g~~p~~~~ 467 (500)
+..+.. |+...
T Consensus 474 ~a~~~~--~~~~~ 484 (514)
T 2gw1_A 474 ESADLA--RTMEE 484 (514)
T ss_dssp HHHHHC--SSHHH
T ss_pred HHHHhc--cccHH
Confidence 998753 55433
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-20 Score=184.72 Aligned_cols=356 Identities=8% Similarity=-0.043 Sum_probs=290.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCc
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 194 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 194 (500)
.-..+.+.|++++|+..|+.+.+.. |+..+|..+..++.+.|++++|+..|+++.+.+ +.+...|..+..++.
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~--- 84 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE--- 84 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH---
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH---
Confidence 4455667899999999999999864 689999999999999999999999999999864 345678888888998
Q ss_pred chHHHHHHHHHHHHHhhcCCCC----------------------------------------------------------
Q 010807 195 DKAKALAKALGYFQKMKGMERC---------------------------------------------------------- 216 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~---------------------------------------------------------- 216 (500)
..|++++|+..|+++......
T Consensus 85 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 -GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp -HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred -HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777899999999988653210
Q ss_pred -------------------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 010807 217 -------------------KPNIVTYNILLRACAQ---ARNVDQVNALFKELHE-----SILA--------PDIYTYNGV 261 (500)
Q Consensus 217 -------------------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~l 261 (500)
+.+...+......+.. .|++++|..+|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0013333444444443 8999999999999987 3111 235677888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 341 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 341 (500)
...+...|++++|...++++.+.... ...+..+..+|...|++++|+..++++..... .+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 89999999999999999999887543 88899999999999999999999999988643 3677899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
++|...++.+.+.. +.+...+..+...+...|++++|..+++.+.+... .+..++..+...|...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999865 34677899999999999999999999999988643 36788999999999999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 010807 422 HNMGV-TPD----SSTYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 484 (500)
Q Consensus 422 ~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 484 (500)
..... .++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|+.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 76421 112 4488999999999 999999999999998753 33566778888888887776543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.5e-18 Score=164.53 Aligned_cols=301 Identities=11% Similarity=0.001 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+...|..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 77 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK--MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--CCcchHHHHH
Confidence 34444444444445555555444444431 122334444444444 3444444544444444321 2234444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 227 LRACAQARNVDQVNALFKELHESILA--PDIYTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 292 (500)
...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 55555555555555555554443210 022222222 3556666666666666666665432 25556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH--------
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE-------- 364 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------- 364 (500)
+..+..++...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 6666666666667777766666666543 2355666666666666677777776666666542 22222222
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 365 ----CIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 365 ----~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|+..+++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2255567777777777777777765422 22 224456667777777777777777776653 3356677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
...+...|++++|...|++..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.7e-18 Score=162.64 Aligned_cols=313 Identities=14% Similarity=0.058 Sum_probs=257.1
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
..+-..+...|++++|+..|+.+.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 344556667899999999999998864 5678899999999999999999999999998863 235678888888888
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKP----NIVTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
..|++++|+..|+++... .| +...+..+ ...+...|++++|..+++++.+.... +..
T Consensus 83 ---~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 155 (359)
T 3ieg_A 83 ---KQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAE 155 (359)
T ss_dssp ---HHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ---HcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chH
Confidence 788899999999999863 34 45555555 58889999999999999999887543 788
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-------
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN------- 329 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 329 (500)
.+..+...+...|++++|...++++.+... .+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 899999999999999999999999998753 37888999999999999999999999999876433 444333
Q ss_pred -----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 330 -----SMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 330 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
.+...+...|++++|...++.+.+... .+. ..+..+...+...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 236678899999999999999988542 233 335567889999999999999999999864 347889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
+..+|...|++++|...|+++.+.. +-+...+..+..+..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 9999999999999999999999874 234556666655543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.4e-18 Score=172.81 Aligned_cols=337 Identities=10% Similarity=-0.001 Sum_probs=264.9
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC----------------- 176 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------- 176 (500)
.+...+.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|+..|+.+....-
T Consensus 64 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (537)
T 3fp2_A 64 NISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 34455566799999999999998874 66788999999999999999999999964321100
Q ss_pred -------------------CCCHH------------------------------HHHHHHHHHHcCc----chHHHHHHH
Q 010807 177 -------------------RPDPS------------------------------VYNALITAHLHTR----DKAKALAKA 203 (500)
Q Consensus 177 -------------------~p~~~------------------------------~~~~li~~~~~~~----~~~~~~~~a 203 (500)
.|+.. ....+...+.... ...+++++|
T Consensus 142 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 01111 1111111111000 023589999
Q ss_pred HHHHHHhhcCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 204 LGYFQKMKGMERCKPN-------IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
+.+|+++.... +.+ ..+|..+...+...|++++|...|+.+.+.. |+...+..+...+...|++++|.+
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 99999998642 233 3357777888999999999999999998864 558889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
.++++.+.... +..++..+..+|...|++++|++.|++..+..+. +...+..+...|...|++++|...++.+.+..
T Consensus 298 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999887543 6888999999999999999999999999886433 56889999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CChhhHHHHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMN----------GLPTEADLLFENS 421 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 421 (500)
+.+...+..+...+...|++++|...|+++.+... ......+..+..++... |++++|...|+++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 44577899999999999999999999999876321 12233455566778888 9999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 422 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 422 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8864 4567889999999999999999999999999764
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=9.8e-18 Score=168.30 Aligned_cols=356 Identities=9% Similarity=0.006 Sum_probs=276.8
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 193 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 193 (500)
.+-..+.+.|++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-- 104 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE-- 104 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH--
Confidence 34455667899999999999998874 6688999999999999999999999999998864 345777888888888
Q ss_pred cchHHHHHHHHHHHHHhhcCCC-----------------------------------CCCCHH-----------------
Q 010807 194 RDKAKALAKALGYFQKMKGMER-----------------------------------CKPNIV----------------- 221 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~-----------------------------------~~~~~~----------------- 221 (500)
..|++++|+..|+.+..... ..|+..
T Consensus 105 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 105 --SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp --HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred --HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 78889999998864421100 001111
Q ss_pred -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhhcCCHHH
Q 010807 222 -------------TYNILLRACA--------QARNVDQVNALFKELHESILAPD-------IYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 222 -------------~~~~ll~~~~--------~~g~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~ 273 (500)
....+...+. ..|++++|..+|+++.+.... + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 124788999999999876433 2 2356777788899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|...++++.+. .|+...+..+...|...|++++|++.|+++.+... .+..+|..+...+...|++++|...++.+.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999886 45578899999999999999999999999988643 3788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCC
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-----VTP 428 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p 428 (500)
.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|...|+++.+.. ...
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 64 3456789999999999999999999999999875 3467889999999999999999999999987632 122
Q ss_pred CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 010807 429 DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 483 (500)
Q Consensus 429 ~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 483 (500)
....+..+...+... |++++|...+++..+.. +.+...+..+-..+...|+.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 233455556777788 99999999999998763 2356778888888888876644
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-18 Score=160.53 Aligned_cols=293 Identities=9% Similarity=-0.059 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+. ..|++++|+.+++++.... +.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----ELNKANELFYLSHKLVDLY--PSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTSTH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----HhhhHHHHHHHHHHHHHhC--cCCHH
Confidence 3455567777777888888888888888887653 223444555556665 6677888888888877532 44567
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 222 TYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 222 ~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
.|..+...+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...|
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 7778888888888 888888888888766433 5667777888888888888888888887766433 445566677788
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhc
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYGY 372 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~ 372 (500)
...|++++|++.+++..+... .+...+..+...+...|++++|...++.+.+.. .+....++..+...|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 888888888888888877643 367778888888888888888888887776531 12335677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK 446 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 446 (500)
.|++++|...+++..+... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++ ...|+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred hcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 8888888888888777543 356777888888888888888888888877653 33566666666666 345544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3e-18 Score=160.46 Aligned_cols=291 Identities=10% Similarity=-0.049 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
..+...+..+...+. ..|++++|+.+|+++.... +.+...+..++..+...|++++|..+++++.+.... +..
T Consensus 19 ~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHY----YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STH
T ss_pred hhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHH
Confidence 455566677777777 6688999999999998643 455667777888999999999999999999886543 678
Q ss_pred HHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 257 ~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+..+...+...| ++++|.+.|++..+.... +...|..+..++...|++++|++.|++..+.... +...+..+...|
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 8889999999999 999999999999987543 6778999999999999999999999999886443 566777799999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--------KDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 407 (500)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..+|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999865 4568899999999999999999999999888732 13346789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hcCCC
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP-NKRFFLEALETF-SSSLA 480 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~ 480 (500)
.|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+. .| +...+..+..++ ...|+
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 999999999999998764 446788999999999999999999999988754 45 445555555555 34443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.8e-18 Score=163.49 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
..+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+..++..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~ 137 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----ENEQELLAISALRRCLELK--PDNQTALMA 137 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----HCcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 345555556666666666666666665542 223444555555555 4444555555555554322 334555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+...+...|++++|...|+++.+.... +...+..+.. ... ... ....+..+...+ ..|+
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-----------~~~-~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-----------GAG-LGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-----------hhc-ccHHHHHHHHHh-hccc
Confidence 555555555555555555555543321 1111100000 000 000 000000122222 5566
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
+++|+..|+++.+..+.. +..++..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666655532221 35556666666666666666666666655542 2345556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT----------PDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++.+.. +.+..++..+..+|.+.|++++|...|+++...... ....+|..+..+|...|++++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 665543 224556666666666666666666666665542100 014566666666666666666665554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.6e-18 Score=162.74 Aligned_cols=288 Identities=8% Similarity=-0.032 Sum_probs=209.9
Q ss_pred HHHHHHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 197 AKALAKALG-YFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 197 ~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
.|++++|+. .|++......-.| +...+..+...+...|++++|...|+++.+.... +..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355667776 6666554321112 2445666777777777777777777777766433 66677777777777778888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS---------------MIINYGKA 338 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~ 338 (500)
|.+.++++.+.... +..++..+..+|...|++++|++.|+++...... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 87777777765432 6667777777777788888888888777765432 2222211 23334488
Q ss_pred CCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
|++++|...++.+.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999886422 158899999999999999999999999998865 34688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHhcCCCCCCCccc
Q 010807 418 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV----------PNKRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 418 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------p~~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
|+++.... +.+..++..+...|.+.|++++|...++++.+..-. .....|..+...+...|+.+.....
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998764 456889999999999999999999999999864211 1267889999999999988766544
Q ss_pred hh
Q 010807 488 KT 489 (500)
Q Consensus 488 ~~ 489 (500)
..
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.3e-14 Score=143.82 Aligned_cols=330 Identities=12% Similarity=0.024 Sum_probs=267.2
Q ss_pred hhccCcchHHHHHHHHcc----cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 010807 104 VKVVRSEHCFLLFEELGK----SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSG 175 (500)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 175 (500)
.+.+..+....+-..+.. .+++++|++.|+...+.+ +...+..+...|.. .+++++|+..|++..+.|
T Consensus 70 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 145 (490)
T 2xm6_A 70 AEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG 145 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 334444433444344444 688999999999998865 67788888888888 889999999999998865
Q ss_pred CCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 010807 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESIL 251 (500)
Q Consensus 176 ~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 251 (500)
+...+..+-..|.......+++++|+++|++..+ ..+...+..+...|.. .++.++|.+.|+...+.|
T Consensus 146 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 217 (490)
T 2xm6_A 146 ---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE----QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG- 217 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-
Confidence 5566667776675311125579999999999886 2478888889999988 899999999999998875
Q ss_pred CCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCC
Q 010807 252 APDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKP 323 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~ 323 (500)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|++.|++..+.|
T Consensus 218 --~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 218 --DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 56778888888876 789999999999988764 45666777777776 899999999999988764
Q ss_pred CHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCH
Q 010807 324 TLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 324 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~~~ 395 (500)
+...+..+...|... +++++|...++...+.| +...+..+...|...| +.++|.+.|++..+.+ +.
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~ 363 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK 363 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence 566777888888887 89999999999998865 5567788888887766 7899999999999875 68
Q ss_pred HHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC
Q 010807 396 STLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGIV 462 (500)
Q Consensus 396 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 462 (500)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.+ .++.++|..+|++..+.|..
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 889999999998 899999999999999875 57788889999988 89999999999999988744
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.2e-14 Score=142.09 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=264.0
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.+++++|+..|+...+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+-..|.......
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 689999999999998875 67889999999998 999999999999998865 5566666777776311115
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NG 269 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 269 (500)
+++++|+.+|++... .-+...+..+...|.. .+++++|++.|+...+.| +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 679999999999986 3467888889999988 789999999999998875 77888888888888 89
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 010807 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQ 341 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 341 (500)
+.++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .++.
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 9999999999998875 56677788888875 789999999999998764 56677778888887 8999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---Chhh
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC-----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTE 413 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~ 413 (500)
++|...|+...+.| +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| ++++
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999998765 566777888888877 89999999999999876 5778888988888877 7899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 010807 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 460 (500)
|+++|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999999864 67889999999998 899999999999999876
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.3e-17 Score=158.69 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=184.5
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262 (500)
Q Consensus 183 ~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 262 (500)
+..+...+. ..|++++|+..|+++.... +.+..+|..+...|...|++++|+..|+++.+.... +..++..+.
T Consensus 68 ~~~~~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 68 AFEEGLKRL----KEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp HHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 444444444 4555666666666555422 345566666666666677777777777666654322 456666666
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK---------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMI 332 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 332 (500)
..|...|++++|...++++.+.... .....+..+...+...|++++|+++|+++.+..+. .+..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6777777777777777666553211 01233445678888999999999999998876433 2688899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
..|...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+... .+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988864 45688999999999999999999999999988643 35889999999999999999
Q ss_pred hHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGV---T--------PDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 413 ~A~~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
+|...|+++.+... . .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998876320 1 1357889999999999999888877654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2.7e-17 Score=156.64 Aligned_cols=268 Identities=8% Similarity=-0.018 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (500)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+...+. ..|++++|+..|+++.... +.+..+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----ENENEQAAIVALQRCLELQ--PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 44568888999999999999999999998764 346778888888888 6777999999999988643 5568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILA---------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITF 293 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 293 (500)
..+...|...|++++|...|+++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999999998775311 01233445678899999999999999999887433 268889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+...|...|++++|++.|++..+..+ .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 9999999999999999999999988643 378899999999999999999999999998864 44588999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKD-----------MKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|++++|...|+++.+.... .+..+|..+..++...|+.+.+..+..+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998873311 1367899999999999999998887765
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.9e-17 Score=150.20 Aligned_cols=276 Identities=11% Similarity=0.048 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+..++..+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 95 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----ENEKDGLAIIALNHARMLD--PKDIAVHAAL 95 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--cCCHHHHHHH
Confidence 34555666666666666666666665542 224445555555555 4445666666666655421 3345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHhccC
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL-ID-SYGKRQ 304 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~-~~~~~~ 304 (500)
...+...|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcc
Confidence 66666666666666666666554322 11111111000 0000011111 11 244555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
++++|.+.++++.+... .+..++..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666665555554422 245555555556666666666666666555532 2345555666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----------DSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++.+.. +.+..++..+..+|...|++++|...++++....... +...+..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 655543 2245566666666666666666666666655432110 2455666666666666666666665
Q ss_pred HH
Q 010807 454 KR 455 (500)
Q Consensus 454 ~~ 455 (500)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.3e-16 Score=149.02 Aligned_cols=259 Identities=9% Similarity=-0.023 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34556666777777777777777777665433 666777777777777777777777777766532 2566777777777
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM--------------II-NYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
...|++++|++.++++.+.... +...+..+ .. .+...|++++|...++.+.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7778888888887777765322 22222222 22 3778899999999999998865 447889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875 3468899999999999999999999999988764 4468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhcCCCCCCCc
Q 010807 446 KELVQKLLKRMEQNGIVP-----------NKRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~~~ 485 (500)
+++|.+.++++.+..-.. +...+..+...+...|+.+...
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999998753221 4677888888888888775443
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=176.42 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHE---SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHhccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 297 IDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 297 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
|+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 555555554 2445555555555555555555555554333
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.2e-16 Score=143.69 Aligned_cols=249 Identities=12% Similarity=0.059 Sum_probs=133.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (500)
....|++..|+..++..... .|+. .....+..+|. ..|+++.|+..++.. -+|+..++..+...+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi----~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYL----AQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHH----HTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHH----HCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 33445555555555443221 2222 22233444454 444455555544321 14455555566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (500)
.++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666665554333 334444444566666666666666655 2355556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 312 VFKSLMHSKEKPTLPTF---NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665542 221111 112222333466666666666666542 44566666666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhC
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNM 424 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 424 (500)
..+ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 432 255666666666666666654 45566665554
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=173.59 Aligned_cols=153 Identities=7% Similarity=-0.017 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
-..||+++|++|++.|+.++|..+|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 010807 401 MLEAYCMNGLP-TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN------KRFFLEALE 473 (500)
Q Consensus 401 li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~ 473 (500)
||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ .-++.|+ ..+..-+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998776554 344445555 3466665 334445555
Q ss_pred HHhcCCCC
Q 010807 474 TFSSSLAG 481 (500)
Q Consensus 474 ~~~~~g~~ 481 (500)
-+.+.+..
T Consensus 281 l~s~d~~~ 288 (1134)
T 3spa_A 281 VYAKDGRV 288 (1134)
T ss_dssp HHCCCSCC
T ss_pred HHccCCCC
Confidence 56665543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=9.8e-18 Score=157.39 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=137.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
+.|++++|.++++.+.. ..+|..++.++.+.|++++|++.|.+. +|...|..++.++. ..|++
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae----~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN----TSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH----hCCCH
Confidence 44779999999998832 348999999999999999999999653 67779999999888 78899
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
++|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..
T Consensus 78 EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 78 EELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988777652 5667889999999999999999998884 36778999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 360 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 360 (500)
+ ..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|...... +...+
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 7 36899999999999999999999988 2889999999999999999999655443 23344
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhhHHHHHHHHHhCCCCC------CHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN--GLPTEADLLFENSHNMGVTP------DSST 432 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~ 432 (500)
.-...++..|.+.|.+++|..+++...... +-....|+-|..+|++- ++..+.++.|..- .+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 445679999999999999999999998765 55688999998888875 3455555555421 12222 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~ 452 (500)
|..+.-.|.+.++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88888889999999988864
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3e-14 Score=142.68 Aligned_cols=211 Identities=9% Similarity=0.030 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFD-------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 338 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (500)
.+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777776652 2366777777777764 68876 8999999988632334688888999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEAD 415 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 415 (500)
|++++|..+|+.+.+. .|+ ...|..++..+.+.|++++|.++|++..+... .+...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999885 343 35788888888889999999999999887532 233333332222 34689999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcCCCCCCCccch
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPN--KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.-....|+.+....+.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999887753 3357888888888889999999999999998874 3343 345656666555566554444333
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.7e-15 Score=137.50 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|.+..|+..+++.... .|+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...|+.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 567799999999887642 3443 3556678999999999999987754 235577888999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 274 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|...++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998876544 566677788999999999999999987 4578899999999999999999999999999
Q ss_pred hCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 010807 353 AMKYTPSFIT---YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429 (500)
Q Consensus 353 ~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 429 (500)
+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.... +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 864 54321 1233455556699999999999999874 5689999999999999999999999999988864 447
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 010807 430 SSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~ 466 (500)
..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 8899999999999999876 67898888864 34443
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.8e-13 Score=133.90 Aligned_cols=383 Identities=11% Similarity=0.092 Sum_probs=263.8
Q ss_pred CccchhHHHHHHHHHHhcCCCchH-HHHHHHhhhccCcchHHHHHHHHccc------------------CCHHHHH----
Q 010807 73 KSEELESKELVRVLMRSFSDKEPL-VRTLNKYVKVVRSEHCFLLFEELGKS------------------DKWLQCL---- 129 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~l~~~------------------~~~~~A~---- 129 (500)
.+...++..+++.++...|....+ ...+....+.++.+.+..+++.+.+. |+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 456778888888888877766553 33444555556666666666554332 2333333
Q ss_pred HHHHHHHHccCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------
Q 010807 130 EVFRWMQKQRWY-IADTGIYSKLIAVMGK---------KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH------- 192 (500)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~------- 192 (500)
.+|+.....-+. +++...|...+....+ .|+++.|..+|++..+....+....|.......-.
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 366665543222 3456778888777665 68899999999998873111112334332221000
Q ss_pred --CcchHHHHHHHHHHHHHh------hcC--CCCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHH
Q 010807 193 --TRDKAKALAKALGYFQKM------KGM--ERCKPN--------IVTYNILLRACAQA----RNV----DQVNALFKEL 246 (500)
Q Consensus 193 --~~~~~~~~~~a~~~~~~~------~~~--~~~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m 246 (500)
.....+.+.+|..++... ... ..++|+ ...|...+...... ++. +++..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 001456778888777652 210 012444 34666666544332 232 4778889988
Q ss_pred HhCCCCCCHHHHHHHHHHHhh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 247 HESILAPDIYTYNGVMDAYGK-------NGMIK-------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 247 ~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
..... -+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+
T Consensus 265 l~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 87633 367888888888775 79987 8999999998632334688899999999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCC
Q 010807 313 FKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 313 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~ 390 (500)
|+++++..+. + ...|..++..+.+.|+.++|..+|+...+.. +.+...|...... +...|+.++|..+|+...+..
T Consensus 344 ~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 344 YNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 9999985322 3 3589999999999999999999999999863 2233333332222 346899999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 422 -p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999998864 2332 457888888888999999999999998864
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.3e-15 Score=131.36 Aligned_cols=241 Identities=13% Similarity=-0.029 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITF 293 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~ 293 (500)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888889999999999999999988877 67888999999999999999999999988764221 12 5788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+..+|...|++++|++.|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999998874 3443 34666788999999999988853 33467788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|++++|...++++.+... .+..+|..+..+|...|++++|+..+++..+.. +.+...+..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988653 468899999999999999999999999998864 446888999999999999999999999
Q ss_pred HHHHHC----CCCCCHHHHHHHHHH
Q 010807 454 KRMEQN----GIVPNKRFFLEALET 474 (500)
Q Consensus 454 ~~m~~~----g~~p~~~~~~~ll~~ 474 (500)
++..+. +..|+.......+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHHH
Confidence 988764 233665555544443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1.4e-16 Score=149.66 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=113.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 157 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236 (500)
Q Consensus 157 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 236 (500)
+.|++++|.++++++. +..+|..+..++. +.|++++|++.|.+. +|..+|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCH
Confidence 6788999999999983 2359999999999 889999999999653 4677999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
++|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988776664 4467888999999999999999998885 367789999999999999999999999976
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 396 (500)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 396 (500)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence 37999999999999999999999988 3789999999999999999999665544 223455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
-...++..|.+.|++++|+.+++...... .-....|+-|..+|++-. .++..+.+
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl 263 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHL 263 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 56679999999999999999999988765 556778888877777642 33333333
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3e-14 Score=140.44 Aligned_cols=343 Identities=12% Similarity=-0.007 Sum_probs=227.5
Q ss_pred HHHcccCCHHHHHHHHHHHHHc-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHH
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQ-------RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G-CRP-DPSV 182 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~ 182 (500)
......|++++|++.|++..+. ...+....+|+.+..+|...|++++|...|++..+. + ..+ ...+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3344569999999998876542 112334678999999999999999999999987652 1 111 2455
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA---CAQARNVDQVNALFKELHESILAPDIYTYN 259 (500)
Q Consensus 183 ~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 259 (500)
+..+..++... ..+++++|+..|++..... +-+...+..+..+ +...++.++|++.+++..+.... +...+.
T Consensus 139 ~~~~g~~~~~~--~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~ 213 (472)
T 4g1t_A 139 DCEEGWTRLKC--GGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKV 213 (472)
T ss_dssp HHHHHHHHHHH--CTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHH--ccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHH
Confidence 55554445422 2357999999999998643 3455566555555 34567788899999988776443 566666
Q ss_pred HHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 260 GVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 260 ~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+...+.. .|++++|.+.+++....... +...+..+...|...|++++|+..+++..+..+. +..++..+..+|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 66555544 46778999999998876433 7778899999999999999999999999886433 677777777666
Q ss_pred Hhc-------------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-
Q 010807 336 GKA-------------------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV- 395 (500)
Q Consensus 336 ~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 395 (500)
... +..+.|...++...+.. +.+..++..+...|...|++++|...|++..+....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 432 23566777787777654 344567788999999999999999999999886543322
Q ss_pred -HHHHHHHH-HHHhcCChhhHHHHHHHHHhCCC-----------------------CCCHHHHHHHHHHHHHcCCHHHHH
Q 010807 396 -STLNAMLE-AYCMNGLPTEADLLFENSHNMGV-----------------------TPDSSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 396 -~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~-----------------------~p~~~~~~~li~~~~~~g~~~~a~ 450 (500)
..+..+.. .+...|++++|+..|.+...... +.+..+|..+...|...|++++|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 12333332 23467899999999988765421 234567888888999999999999
Q ss_pred HHHHHHHHCC-CCCCHHH
Q 010807 451 KLLKRMEQNG-IVPNKRF 467 (500)
Q Consensus 451 ~~~~~m~~~g-~~p~~~~ 467 (500)
+.|++..+.| ..|+...
T Consensus 451 ~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASS 468 (472)
T ss_dssp ------------------
T ss_pred HHHHHHHhcCCCCCcHhh
Confidence 9999988764 3455443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1.8e-12 Score=135.78 Aligned_cols=319 Identities=12% Similarity=0.098 Sum_probs=234.0
Q ss_pred hhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-CCCCHHHHHHH---------------------------HHHH
Q 010807 104 VKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-YIADTGIYSKL---------------------------IAVM 155 (500)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l---------------------------i~~~ 155 (500)
.+..+++..-...+.+...|.+.+|+++++++.-.+. +..+....+.+ ...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 4556777777788888888999999999998874431 12233334433 3456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCC
Q 010807 156 GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 235 (500)
Q Consensus 156 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 235 (500)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie-------~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE-------HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH-------HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Confidence 67777888888887752 12222233333 5567888888888663 46788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
+++|+..|... -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|.+.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377888889999999999999999998877764 33333445888899998888644443
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 010807 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 395 (500)
-.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +.
T Consensus 1191 -----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 -----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred -----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1346667778899999999999999999874 378899999999999999999988762 57
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
.+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....|..+-..+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 8888888888888888888877664 23466777888999999999999999997766333 22334454444444
Q ss_pred hc
Q 010807 476 SS 477 (500)
Q Consensus 476 ~~ 477 (500)
++
T Consensus 1325 aK 1326 (1630)
T 1xi4_A 1325 SK 1326 (1630)
T ss_pred Hh
Confidence 43
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-14 Score=126.20 Aligned_cols=197 Identities=12% Similarity=0.020 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
++...+..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 34455555555666666666666666665554333 4555555555555666666666666555554322 444555555
Q ss_pred HHHhcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 298 DSYGKR-----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366 (500)
Q Consensus 298 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 366 (500)
.++... |++++|+..|++..+..+. +...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 4444444444444443221 33444444444444444444444444444433 334444444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..+|...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444444444444444321 1344444444444444444444444443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.9e-14 Score=125.88 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
+++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 356678888899999999999999999999987544 7888999999999999999999999999886433 78889999
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 332 IINYGKA-----------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 332 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
..++... |++++|...+++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998864 3457889999999999999999999999999877 68999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998864 4467888999999999999999999987654
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=6.8e-13 Score=120.51 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
-+...+..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35667777788888888888888888887773 255677777778888 888888888888887765 66777
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 294 NLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 294 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777788877 888888888888887764 67778888888888 888888888888888765 5666777
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 366 IITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 366 li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777 788888888888888765 46777788888888 888888888888887764 366777777
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCC
Q 010807 438 KAYTK----ANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 438 ~~~~~----~g~~~~a~~~~~~m~~~g 460 (500)
..|.+ .+++++|.+++++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88887 888888888888887765
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.5e-14 Score=128.56 Aligned_cols=226 Identities=9% Similarity=-0.021 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCC-CCCCC----
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPN---- 219 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---- 219 (500)
...|..+...+...|++++|+..|++..+.. .+...+..+..++. ..|++++|+..|++..... ...++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----EKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----HcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 4557777777777888888888888777765 56666666666666 5556777777777665421 00111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
..+|..+...+...|++++|...|+++.+.. |+. ..+.+.|++++|...++++...... +...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHH
Confidence 4566677777777777777777777766542 232 2344445556666666665554211 33445555555
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
+...|++++|+..|++..+... .+..+|..+..+|...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 5555555555555555554322 234445555555555555555555555544432 22344444444444455555555
Q ss_pred HHHHHHHHH
Q 010807 380 REIFDELSK 388 (500)
Q Consensus 380 ~~~~~~~~~ 388 (500)
...+++..+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=3.9e-12 Score=133.34 Aligned_cols=312 Identities=13% Similarity=0.132 Sum_probs=238.5
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
+..+-..+...|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+-.++.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 33445566778999999999999632 1222333332 778999999999865 34678888888888
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
..|++++|++.|.+. .|...|..++..|.+.|++++|++.|...++..-.|.. .+.++.+|++.+++
T Consensus 1117 ----~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1117 ----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRL 1183 (1630)
T ss_pred ----hCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCH
Confidence 788899999999775 37788899999999999999999999988776533333 33599999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
++...++ . .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 8654443 2 346677778999999999999999999985 48999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 352 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-...
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 35689999999999999999998876543 2357788899999999999999999998887654 33455
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHhcCCCCC
Q 010807 432 TYKLLYKAYTKA--NMKELVQKLLKRMEQN-GIVP------NKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 432 ~~~~li~~~~~~--g~~~~a~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~g~~~ 482 (500)
.|+-|...+++. ++..++.++|. ++ +++| +...|..++--|.+.|.++
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 677777777664 34444444443 33 3333 3456777777777666654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.1e-14 Score=130.52 Aligned_cols=248 Identities=8% Similarity=-0.112 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 196 KAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|++++|+..|+++...... +.+..+|..+...+...|++++|...|+++.+.... +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 568899999999999863211 124678889999999999999999999999887544 78899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|.+.++++.+.... +...+..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999886433 67788999999999999999999999998753 3333444445555677999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
.. +++...+ .++..+...++.++|...+....+..... +..++..+..+|...|++++|...|+++.... |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 3343444 47777888888999999998887643211 25788899999999999999999999998763 422
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 010807 431 STYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233355677888888887765
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.6e-13 Score=117.47 Aligned_cols=202 Identities=10% Similarity=-0.055 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...|..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 3455666666667777777777777666654322 4556666666666666666666666666554322 4555556666
Q ss_pred HHhcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 299 SYGKR-QAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
.|... |++++|+..++++.+.+..| +...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666665521122 23455555555555566666655555555432 22344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
++|..+++.+.+.....+...+..+...+...|+.++|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555433212444455555555555555555555555443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2e-12 Score=117.40 Aligned_cols=211 Identities=14% Similarity=0.033 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK---- 267 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---- 267 (500)
..|++++|+..|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 18 ~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred hCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 33445566666655554 2344556666666666 777777777777776654 56666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----AR 339 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 339 (500)
.+++++|++.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCC
Confidence 777777777777777664 56667777777777 778888888887777654 55666677777776 77
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLP 411 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 411 (500)
++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 165 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 8888888888877754 45667777777777 888888888888888765 36677778888887 8888
Q ss_pred hhHHHHHHHHHhCC
Q 010807 412 TEADLLFENSHNMG 425 (500)
Q Consensus 412 ~~A~~~~~~m~~~~ 425 (500)
++|...|++..+.|
T Consensus 239 ~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 239 KQAIENFKKGCKLG 252 (273)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888877764
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=4.4e-13 Score=120.06 Aligned_cols=201 Identities=10% Similarity=-0.003 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 456677777777777777777777777665322 5566666667777777777777777766655322 45566666666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
|...|++++|+++|+++...+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 34455555556666666666666666555532 2234555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++.+.+... .+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555554332 34445555555555555555555555555543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.1e-13 Score=119.15 Aligned_cols=210 Identities=10% Similarity=0.023 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 255 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 334 (500)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (500)
...+..+...+...|++++|.+.|+++.+... .+...+..+..+|...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 45677788889999999999999999987643 3788899999999999999999999999987643 378899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
|...|++++|..+++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998843344 467888899999999999999999999988653 368899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 470 (500)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.. |+...+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 999999998764 4577888899999999999999999999998753 54444433
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=3.9e-13 Score=121.89 Aligned_cols=245 Identities=12% Similarity=0.015 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--DIITFNLLIDS 299 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~ 299 (500)
.+......+...|++++|+..|+++.+.... +...+..+...+...|++++|++.+++..+....+ ....|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455677788888999999999888876543 45577778888888999999999998888743222 23447888888
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
|...|++++|++.|++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888876433 66788888899999999999999998887763 44567777777334445699999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG-VTPD------SSTYKLLYKAYTKANMKELV 449 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~a 449 (500)
.+.|+++.+... .+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998888653 357788888888888888 888888888876531 1233 25777788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 010807 450 QKLLKRMEQNGIVPNKRFFLEAL 472 (500)
Q Consensus 450 ~~~~~~m~~~g~~p~~~~~~~ll 472 (500)
.+.+++..+.. |+.......+
T Consensus 241 ~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHhcC--ccHHHHHHHh
Confidence 99999988653 5544443333
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=6.2e-13 Score=126.02 Aligned_cols=230 Identities=9% Similarity=-0.022 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
...|+.+...+.+.|++++|+..|+++++.... +...|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 345666666677777777777777777765443 56667777777777775 77777777777766443 6667777777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVS 377 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~ 377 (500)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777765433 66777777777777777777777777777754 3356777777777777 45445
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------
Q 010807 378 RA-----REIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------ 444 (500)
Q Consensus 378 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 444 (500)
+| +..|++.++... -+...|+.+..++...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 55 477777776543 25677777777777777 577888877776 332 345667777777777763
Q ss_pred ---CHHHHHHHHHHH
Q 010807 445 ---MKELVQKLLKRM 456 (500)
Q Consensus 445 ---~~~~a~~~~~~m 456 (500)
.+++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 247788888877
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.5e-13 Score=122.27 Aligned_cols=201 Identities=7% Similarity=0.021 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 4455666666777777777777777777664332 5666666677777777777777777776655322 5566666667
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
.|...|++++|++.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777665432 255666666667777777777777777666543 3345666666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777776666532 34666666777777777777777777766654
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=3.4e-12 Score=125.73 Aligned_cols=308 Identities=10% Similarity=-0.016 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC-
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G--CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM- 213 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~- 213 (500)
..+..||.+..++...|+.++|++.|++..+. + ..| ...+|+.+...|. ..|++++|+..|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHh
Confidence 34678999999999999999999999987542 1 122 4567888888888 677799998888876531
Q ss_pred ---CC--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhhcCCHHHHHHHHHHHHh
Q 010807 214 ---ER--CKPNIVTYNILLRACAQA--RNVDQVNALFKELHESILAPDIYTYNGVMDA---YGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 214 ---~~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~ 283 (500)
.+ ......+++.+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 11 122456777776666654 4699999999999876543 45555555444 4456788889999998877
Q ss_pred CCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 010807 284 NQCKPDIITFNLLIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 359 (500)
Q Consensus 284 ~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 359 (500)
.... +...+..+...+. ..+++++|.+++++.....+ .+..++..+...|...|++++|...+++..+.. +-+
T Consensus 204 l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 6433 5566665554443 35788899999999887643 478889999999999999999999999998864 345
Q ss_pred HHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 360 FITYECIITMYGYC-------------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 360 ~~~~~~li~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..++..+...|... +..+.|...++...+... .+..++..+...|...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66777776665432 235678888888877643 3566788899999999999999999999
Q ss_pred HHhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHC
Q 010807 421 SHNMGVTPDSS--TYKLLYK-AYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 421 m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~ 459 (500)
..+....+... .+..+.. ...+.|++++|+..|++..+.
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98865333221 2233332 345789999999999988764
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.4e-12 Score=114.36 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=180.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...+...|++++|.+.++++.+... .+...+..+..+|...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 456788888999999999999999999988643 3678899999999999999999999999987643 37888999999
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 334 NYGKA-RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 334 ~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
.+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999998433343 67888999999999999999999999988653 3688999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 472 (500)
++|...++++.......+...+..+...+...|+.+.+..+++.+.+. .|+...+..++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 999999999887642157778888888899999999999999998754 35555544443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=4.1e-13 Score=121.76 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP--DIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++..+.+..+ ....|..+...+...|++++|+
T Consensus 17 ~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 33444444444443321 2222344444445555555555555555554422111 1223455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.+++..+.... +...+..+..+|...|++++|++.|++..+.. +.+...|..+...+...+++++|...++.+.+..
T Consensus 95 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 95 QQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555555443222 34455555555555666666666665555442 2244445555422223336666666666555532
Q ss_pred CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 356 YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLG-KDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|...|+++.+.
T Consensus 173 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 173 -PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2234455555555555555 555555555554421 0111 245556666666667777777777666654
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=5.3e-13 Score=126.48 Aligned_cols=149 Identities=8% Similarity=0.043 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHH-HHHHHHHHHHhhcCCCCCCCHH
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKA-LAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+...|+.+..++.+.|++++|+..|++.++. .| +...|+.+...+. ..|+ +++|+..|+++.... +.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~----~~g~d~~eAl~~~~~al~l~--P~~~~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----SLQKDLHEEMNYITAIIEEQ--PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHH----HcccCHHHHHHHHHHHHHHC--CCCHH
Confidence 3567888888888888888888888888764 34 3455555555555 4453 666666666665432 34555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
.|+.+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6666666666666666666666666554433 4555555555555555555555555555554332 4445555555554
Q ss_pred c
Q 010807 302 K 302 (500)
Q Consensus 302 ~ 302 (500)
+
T Consensus 246 ~ 246 (382)
T 2h6f_A 246 N 246 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.6e-13 Score=119.82 Aligned_cols=202 Identities=9% Similarity=0.043 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.....|..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|++.|+++.+... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 34566777888899999999999999999886433 788899999999999999999999999987643 3788999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
..|...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 45688899999999999999999999999988653 46889999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+|+..++++.... +.+..++..+...+...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999988764 446889999999999999999999999999875
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.2e-13 Score=123.69 Aligned_cols=224 Identities=12% Similarity=-0.060 Sum_probs=147.6
Q ss_pred cccCCHHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
...+++++|+..|+.+.+.... +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+. ..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----~~ 90 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT----QA 90 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----HT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----Hc
Confidence 3457888999999888875311 1246678888888999999999999999888753 235677777777777 66
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
|++++|+..|+++.... +.+...|..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 91 ~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 67888888888877532 4456777888888888888888888888877643 3333344444455666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+.+...... ++...+ .++..+...++.++|++.+++........ +..++..+...|...|++++|...|+.+.+.
T Consensus 167 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 766655422 232333 35556666677777777777665432110 1345555555666666666666666665553
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.7e-12 Score=124.13 Aligned_cols=296 Identities=10% Similarity=0.012 Sum_probs=205.6
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCcchHHHHHHHH-----------HHHHHhhcCCCCCCC
Q 010807 155 MGKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALAKAL-----------GYFQKMKGMERCKPN 219 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~li~~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 219 (500)
+.+.+++++|..+++++.+. .+..|. ..|-.++..-... -.+.++.+. +.++.+... +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~--~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~ 96 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNL--MLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QAR 96 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--HHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH--HHhhcCcccccccccccchhhHHHHHHhc---CCC
Confidence 44577888888888877653 222332 2333333221100 223344444 555555431 111
Q ss_pred HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----
Q 010807 220 IV------TYNILLRACAQARNVDQVNALFKELHES----ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---- 284 (500)
Q Consensus 220 ~~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 284 (500)
.. .+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+.+..+.
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 11 1223666788899999999999998764 1111 2467888899999999999999999987653
Q ss_pred CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 010807 285 QC--KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-P----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM--- 354 (500)
Q Consensus 285 ~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 354 (500)
+. .....+++.+..+|...|++++|++.|++..+.... . ...++..+...|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 11 112457888899999999999999999987653111 1 1247888999999999999999999988762
Q ss_pred -CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC
Q 010807 355 -KY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG 425 (500)
Q Consensus 355 -~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~ 425 (500)
+. +....++..+...|...|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~ 333 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M 333 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence 32 334678899999999999999999999987753 111123345678888888998 78888888775 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 426 VTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 426 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|+ ...+..+...|...|++++|..++++..+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 45677888899999999999999998875
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.2e-12 Score=127.94 Aligned_cols=224 Identities=9% Similarity=-0.010 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG---MIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
.+..+...|...+.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 444445555555533333332222211111123336777777777788 788888888888877644 5555566666
Q ss_pred HHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 299 SYGKR----QAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-Y--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 299 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.|... +++++|++.|++.. . -+...+..+... | ...+++++|...|++..+.| +...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 66554 68888888888876 2 245566666665 3 45788888888888888765 5667777777776
Q ss_pred ccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 372 YCD-----NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 372 ~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
.| ++++|.+.|++.. .| ++..+..|...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence 44 8888888888777 43 57777777777766 3378888888888877662 3345556666653
Q ss_pred ----cCCHHHHHHHHHHHHHCCC
Q 010807 443 ----ANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 443 ----~g~~~~a~~~~~~m~~~g~ 461 (500)
..+.++|..+|+...+.|.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 4578888888888887774
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=5.7e-13 Score=128.71 Aligned_cols=269 Identities=10% Similarity=-0.012 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCCC
Q 010807 149 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-P----SVYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKPN 219 (500)
Q Consensus 149 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 219 (500)
..+...+...|++++|+..|++..+.+ |+ . ..+..+...+. ..|++++|+..|++.... ...+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYF----YLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 334444555555555555555555432 22 1 23334444444 444455555555444321 001223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCC-----------------HHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESI-----LAPDIYTYNGVMDAYGKNGM-----------------IKEMESV 277 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~ 277 (500)
..++..+...|...|++++|...+++..+.. ......++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566777777777888888887777665421 01123455666666666777 6666666
Q ss_pred HHHHHhC----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHH
Q 010807 278 LSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 278 ~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
+++..+. +. .....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6654331 11 112235556666666667777777666665432110 01 12455555666666666666666
Q ss_pred HHHHHhCCCC-C----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 348 FQKMTAMKYT-P----SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 348 ~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
+++....... . ...++..+...|...|++++|...+++..+... .....++..+..+|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6555432100 0 133455555555666666666666555543110 00123445555555555555555555
Q ss_pred HHHHHh
Q 010807 418 FENSHN 423 (500)
Q Consensus 418 ~~~m~~ 423 (500)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=4.5e-11 Score=110.53 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYG-------KNGMI-------KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
++|..+|++....... +...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555556555553222 4455555554443 23554 6677777766652112245566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRAR 380 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~ 380 (500)
.|++++|.++|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776663222 222 66666666667777777777777776643 233344433333221 257777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTP--DSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+|+...+... -+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777766432 256677777777777777777777777777652 343 35566666777777777777777777776
Q ss_pred HC
Q 010807 458 QN 459 (500)
Q Consensus 458 ~~ 459 (500)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=6.6e-13 Score=127.81 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---CC
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER 215 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 215 (500)
.....+......+...|++++|...|++..+.+. .+ ...+..+...+. ..|++++|+..|++.... .+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcc
Confidence 3455666777777788888888888887776531 12 235555666666 556677777777765321 01
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhhcCC-------------------
Q 010807 216 -CKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGM------------------- 270 (500)
Q Consensus 216 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~------------------- 270 (500)
.+....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 1122456777888888889998888888876543110 12 3467777778888888
Q ss_pred -HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcC
Q 010807 271 -IKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKAR 339 (500)
Q Consensus 271 -~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~ 339 (500)
+++|.+.+.+.... +..+ ...++..+...|...|++++|++.+++..+... .++ ..++..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 88888877765432 1111 234567777788888888888888877654211 111 236777777788888
Q ss_pred CHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcC
Q 010807 340 LQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNG 409 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 409 (500)
++++|...+++...... ..+ ..++..+...|...|++++|...+++..+.... .+ ..++..+..+|...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 88888888877654210 011 456677777788888888888887776652110 11 456677777778888
Q ss_pred ChhhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCH
Q 010807 410 LPTEADLLFENSHNM----GVTP-DSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~ 446 (500)
++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888888877775542 1111 134455555566555543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=9.2e-13 Score=126.80 Aligned_cols=298 Identities=9% Similarity=-0.026 Sum_probs=219.5
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHES---- 249 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 249 (500)
.....+......+. ..|++++|+..|++..... +.+ ...|..+...+...|++++|...+++....
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 34445555556666 6778999999999998642 233 357889999999999999999999987543
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHhccCC------------------
Q 010807 250 ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CK-PDIITFNLLIDSYGKRQA------------------ 305 (500)
Q Consensus 250 g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~------------------ 305 (500)
+..| ...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 2111 24567888899999999999999999876531 11 114478888899999999
Q ss_pred --HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhcc
Q 010807 306 --FDKMEQVFKSLMHS----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYC 373 (500)
Q Consensus 306 --~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~ 373 (500)
+++|++.+++.... +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999876542 1111 245788889999999999999999998865310 122 34788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHc
Q 010807 374 DNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKA 443 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~ 443 (500)
|++++|...+++..+.... .+ ..++..+...|...|++++|...+++.....- ..+ ..++..+...|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999988752111 11 56788899999999999999999998765311 112 56788888999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCC
Q 010807 444 NMKELVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAG 481 (500)
Q Consensus 444 g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 481 (500)
|++++|..++++..+. |..+. ..++..+-..+...|..
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999987754 32222 34455566666666654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=4e-13 Score=129.77 Aligned_cols=269 Identities=9% Similarity=-0.037 Sum_probs=205.7
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCH
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHES----IL-APDI 255 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 255 (500)
.+...+. ..|++++|+..|+++.... +.+. ..|..+...|...|++++|...+++..+. +. ....
T Consensus 53 ~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 53 LEGERLC----NAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH----HhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3344455 6778999999999998642 3333 57889999999999999999999987653 11 1234
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSN----Q-CKPDIITFNLLIDSYGKRQA-----------------FDKMEQVF 313 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 313 (500)
.++..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 66788889999999999999999987653 1 11234578888899999999 99999999
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 010807 314 KSLMHS----KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 314 ~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~ 383 (500)
++..+. +. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 11 11235788889999999999999999998866321 112 337888999999999999999999
Q ss_pred HHHHHCCCC-----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 384 DELSKLGKD-----MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 384 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++..+.... ....++..+..+|...|++++|...+++..... . .....++..+...|...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988763211 125678889999999999999999999876531 0 112457888899999999999999999
Q ss_pred HHHHHC
Q 010807 454 KRMEQN 459 (500)
Q Consensus 454 ~~m~~~ 459 (500)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3.8e-12 Score=125.11 Aligned_cols=214 Identities=10% Similarity=0.012 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
...+++++..+++.... .+.+...|..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|.
T Consensus 81 ~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34467777777776642 245777888888888888888 8888888888776433 5777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKR---------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-------- 338 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 338 (500)
+.|++..+. .|+...+..+..+|... |++++|++.|++..+..+ .+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcccc
Confidence 888887776 35567777777777777 777777777777776533 2566677777777666
Q ss_pred CCHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 339 RLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
|++++|...|++..+.. + -+...|..+..+|...|++++|.+.|++..+... -+...+..+..++...|++++|+
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666542 1 2455666666666666666666666666655432 24555566666666666666655
Q ss_pred HHH
Q 010807 416 LLF 418 (500)
Q Consensus 416 ~~~ 418 (500)
+.+
T Consensus 313 ~~~ 315 (474)
T 4abn_A 313 ESK 315 (474)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.7e-11 Score=103.99 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...|..+..+|.+.|++++|++.|++.++..+. +..++..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666654322 55666666666666666666666666665543 334555556666
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
.+...++++.|...+.+..+... -+...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665432 246666666666667777777777776666543 3355666666666777777777
Q ss_pred HHHHHHHHHHC
Q 010807 449 VQKLLKRMEQN 459 (500)
Q Consensus 449 a~~~~~~m~~~ 459 (500)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666643
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=2.8e-11 Score=118.17 Aligned_cols=238 Identities=11% Similarity=0.027 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CCH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR---NVDQVNALFKELHESILAPDIYTYNGVMDAYGKN----GMI 271 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~ 271 (500)
..+++..++...... .|+ .+..|...|...| +.++|++.|+...+.|.. +...+..+...|... +++
T Consensus 160 ~~~~a~~~~~~a~~~---~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAALNT---TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHTTT---CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHHcC---CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 455555555555431 233 6777777777777 778888888887777644 555555666666554 678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHhH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDS-Y--GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-----LQGK 343 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 343 (500)
++|++.|++.. . -+...+..|... | ...+++++|++.|++..+.| +...+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88888888776 3 244555555555 3 45778888888888877665 5666677777666 44 7788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHH
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEAD 415 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 415 (500)
|...|++.. .-+...+..|...|.. ..+.++|...|+...+.| +......|...|.. ..+..+|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888877766 2356666667766665 347888888888877766 34455566666653 34677888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+|+...+.| .++.......+......++..+|..+.++..+
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888877766 22222222222222333455566666665544
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=4.3e-12 Score=124.74 Aligned_cols=216 Identities=9% Similarity=-0.031 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 313 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (500)
.++++++.+++...... .+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46677778877665433 4788999999999999999 9999999999887433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCH
Q 010807 314 KSLMHSKEKPTLPTFNSMIINYGKA---------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------DNV 376 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~ 376 (500)
++..+.. |+...+..+...|... |++++|...+++..+.. +-+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999854 6678999999999999 99999999999998864 44688999999999988 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++|...|++..+.... -+...|..+..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999986431 378999999999999999999999999998864 3467788999999999999999988665
Q ss_pred HH
Q 010807 455 RM 456 (500)
Q Consensus 455 ~m 456 (500)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=9.8e-13 Score=121.59 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=167.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-----
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----- 284 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 284 (500)
+.+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334667888888999999999999999888763 22234566788888889999999999998887654
Q ss_pred -CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-
Q 010807 285 -QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 354 (500)
Q Consensus 285 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 354 (500)
+. .....++..+...|...|++++|++.|++..+. +. ......+..+...|...|++++|..+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 224567788888999999999999999887654 12 223567888888999999999999999888764
Q ss_pred -----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-------CCC-------CHHHHHHHHHHHHhcCChhhH
Q 010807 355 -----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLG-------KDM-------KVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 355 -----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~A 414 (500)
+..| ...++..+...|...|++++|.+.++++.+.. ..+ ....+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 24577888899999999999999999887521 111 122233334445556677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
...+....... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777766542 33466788899999999999999999998765
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=3e-11 Score=102.42 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
.|..+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..+........ .+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHH
Confidence 3444444444444444444444444333221 334444444444444444444444444443321 13344444444444
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
..++++.+...+....... +.+...+..+...|...|++++|++.|++..+..+ .+..+|..+..+|.+.|++++|+.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555544444432 22344445555555555555555555555554432 244555555555555555555555
Q ss_pred HHHHHHh
Q 010807 417 LFENSHN 423 (500)
Q Consensus 417 ~~~~m~~ 423 (500)
.|++.++
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=1.3e-12 Score=121.91 Aligned_cols=275 Identities=12% Similarity=0.062 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCC
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKP 218 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 218 (500)
+......+...|++++|...|+++.+.. |+ ...+..+...+. ..|++++|+..+++.... ...+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 3444555566666666666666665542 22 233444444444 344455555555554321 00011
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCC--------------------HHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGM--------------------IKE 273 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~ 273 (500)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 244566777777777888888777776544210 011 2345555566666666 555
Q ss_pred HHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010807 274 MESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 348 (500)
Q Consensus 274 a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (500)
|.+.+++.... +.. .....+..+...|...|++++|.+.+++..+...
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------- 214 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------------------
Confidence 55555544321 100 0122344444445555555555555544432100
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 349 QKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-M----KVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 349 ~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
..+. .....++..+...+...|++++|...+++..+.... . ...++..+...|...|++++|...+++..
T Consensus 215 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 215 ----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp ----HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0000 001224445555555555555555555544431100 0 13455556666666666666666666554
Q ss_pred hC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 423 NM----GV-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 423 ~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.. +- .....++..+...|.+.|++++|..++++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 32 10 011335556666666677777777766666543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=7.3e-11 Score=109.10 Aligned_cols=218 Identities=7% Similarity=0.003 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACA-------QARNV-------DQVNALFKELHES-ILAPDIYTYNGVMDAY 265 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 265 (500)
++|+..|++..... +.+...|..++..+. +.|++ ++|..+|++..+. .. -+...|..+...+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34555555554321 345555555555554 24664 7777777777763 22 2556777777777
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHhH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDII-TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGK 343 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 343 (500)
.+.|++++|.++|++..+.... +.. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888777764222 232 677777777777888888888888776543 23444443333322 3688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDM--KVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877643 3357777888888888888888888888888752 233 466788888888888888888888888
Q ss_pred HHhC
Q 010807 421 SHNM 424 (500)
Q Consensus 421 m~~~ 424 (500)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=3.4e-12 Score=119.08 Aligned_cols=263 Identities=9% Similarity=-0.041 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIIT 292 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~ 292 (500)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555666667777777777766654322 2 245566666666777777777766664432 111 12445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKARL--------------------QGKAEYV 347 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 347 (500)
+..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777777777777776543211 112 3466777777777777 7888777
Q ss_pred HHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 348 FQKMTAM----KYT-PSFITYECIITMYGYCDNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 348 ~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
+++.... +.. ....++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765432 111 12456788888899999999999999887652 11 11244788899999999999999999
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCCCCCc
Q 010807 418 FENSHNMGV-TPD----SSTYKLLYKAYTKANMKELVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 418 ~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~~~ 485 (500)
+++...... ..+ ..++..+...+...|++++|..++++..+. +-.+. ...+..+-..+...|+.+...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998765310 112 567888889999999999999999988754 21111 345667777777777665443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.3e-11 Score=118.02 Aligned_cols=295 Identities=9% Similarity=-0.066 Sum_probs=204.1
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIAD--TGIYSKLIAV--MGKKGQTRLAM-----------WLFSEMRNSGCRPDPSVYN 184 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~~~~ 184 (500)
+.+++++|..+++.+.+.- ....| ...|..++.. ..-.++++.+. +.++.+.... .+...+.
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l 101 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLL 101 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHH
Confidence 4588888988888876542 12123 3334444332 12223444444 6666665421 1111111
Q ss_pred ------HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 010807 185 ------ALITAHLHTRDKAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHESILA-P 253 (500)
Q Consensus 185 ------~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p 253 (500)
.....+. ..|++++|+..|++......-.+ ...+|..+...|...|++++|+..+++..+.-.. +
T Consensus 102 ~~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 102 EYYFNFFRGMYEL----DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 1223333 66789999999999875321122 3467899999999999999999999987653111 1
Q ss_pred -----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 010807 254 -----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---- 319 (500)
Q Consensus 254 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 319 (500)
...+++.+...|...|++++|++.+++..+. +.. ....++..+..+|...|++++|++.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2357888889999999999999999987643 111 11247888999999999999999999988762
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCC
Q 010807 320 KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGK 391 (500)
Q Consensus 320 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~ 391 (500)
+. +....++..+...|...|++++|...+++..+.. -+.....+..+...|...|+ +++|..++++... .
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~ 335 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--Y 335 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--H
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--H
Confidence 23 3346789999999999999999999999876531 11123346778888999999 7777777776521 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+.....+..+...|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22345778899999999999999999998765
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=1.1e-10 Score=111.32 Aligned_cols=311 Identities=9% Similarity=0.013 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHc----CcchH---HHHHHHHHHHH
Q 010807 142 IADTGIYSKLIAVM--GKKGQTRLAMWLFSEMRNS--GCRPD--PSVYNALITAHLH----TRDKA---KALAKALGYFQ 208 (500)
Q Consensus 142 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~----~~~~~---~~~~~a~~~~~ 208 (500)
.|+..+-+.+-..| .+.+++++|..+++++.+. .++.| ...|-.++..-.. ..... +......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34455555555555 6788888888888887652 22223 2333333322110 00000 01111114444
Q ss_pred HhhcCCCCCC-C-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 209 KMKGMERCKP-N-I---VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 209 ~~~~~~~~~~-~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
.+.... .+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|++++|...+
T Consensus 87 ~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 87 TIETPQ--KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHGGG--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccC--CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 443210 11 1 1 1233455667789999999999999876421 122 456788889999999999999999
Q ss_pred HHHHhC----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHH
Q 010807 279 SRMKSN----QC-KP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 279 ~~m~~~----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
.+..+. +. .+ ...+++.+..+|...|++++|++.|++..+. +.. ....++..+..+|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 987653 11 11 2557888999999999999999999887652 111 1235788899999999999999999
Q ss_pred HHHHHh-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---hhhHH
Q 010807 348 FQKMTA-----MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCMNGL---PTEAD 415 (500)
Q Consensus 348 ~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~ 415 (500)
+++..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....++.+...|...|+ +.+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999877 43 3337788999999999999999999999988732 12224456667777777888 78888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 324 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888762 22222 34667788899999999999999998864
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=120.87 Aligned_cols=247 Identities=15% Similarity=0.070 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-------GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 213 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~--- 213 (500)
+..++..+...+...|++++|..+|+++.+. ........+..+...+. ..|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888887652 11222344445555555 445566666666555431
Q ss_pred ---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 214 ---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 214 ---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
...+....++..+...|...|++++|...|+++.+. +..| ....+..+...+...|++++|.++++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223445666667777777777777777666543 1111 233455555556666666666666655544
Q ss_pred C------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010807 284 N------QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-------EKPTLPTFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 284 ~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
. +..| ...++..+..+|...|++++|++.++++.+.. ..+.......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------- 242 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------- 242 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------
Confidence 2 1111 22344555555555566666655555554310 0000000000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 350 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
....+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..+|++..+
T Consensus 243 ---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ---------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01122223333334444455555555554432 22345566666667777777777776666554
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=7.1e-10 Score=105.44 Aligned_cols=272 Identities=11% Similarity=-0.002 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC----
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS----VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---- 219 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 219 (500)
+......+...|++++|...+++........+.. .++.+...+. ..|++++|...+++......-..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4445556667888888888888877653222222 3334444454 567778887777776532110112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC----C
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHES----ILA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK----P 288 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~ 288 (500)
..+++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 234566777888888888888888876542 221 2 2345566777788888888888888876653211 1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFN----SMIINYGKARLQGKAEYVFQKMTAMKYTP---S 359 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~ 359 (500)
...++..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 23456677777788888888888887765431111 111111 22334667788888888877765533111 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234556667777778888887777766542 211122 2555566667777777777777776553
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.3e-10 Score=96.59 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=102.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555556666666666666666554422 245566666666666666666666666665542 334556666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777776666643 2356666666777777777777777777766553 3345666667777777777777777
Q ss_pred HHHHHHH
Q 010807 452 LLKRMEQ 458 (500)
Q Consensus 452 ~~~~m~~ 458 (500)
++++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.1e-10 Score=108.24 Aligned_cols=225 Identities=9% Similarity=-0.004 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESIL-----AP-DIYTYNGVMDAY 265 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p-~~~~~~~ll~~~ 265 (500)
..|++++|+..|++......-.++ ..++..+...|...|+++.|...+++..+... .+ ...+++.+...|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 667899999999998753221233 55788899999999999999999998765311 11 245778889999
Q ss_pred hhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHH
Q 010807 266 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-----SKEKPTLPTFNSMIINY 335 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~ 335 (500)
...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.|++..+ .... ...++..+...|
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~ 271 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTL 271 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHH
Confidence 9999999999999987653 211 1235678899999999999999999998876 4333 377889999999
Q ss_pred HhcCCHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 336 GKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|...++.... .+.....+..+...|...
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHC
Confidence 99999999999999987742 12224456777778888888 7777777776221 112245677889999999
Q ss_pred CChhhHHHHHHHHHh
Q 010807 409 GLPTEADLLFENSHN 423 (500)
Q Consensus 409 g~~~~A~~~~~~m~~ 423 (500)
|++++|...|++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=4.3e-10 Score=94.86 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHH
Confidence 3333333333444444444443333321 1133334444444444444444444444443322 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544444444432 1234444445555555555555555554443
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=4.3e-08 Score=99.25 Aligned_cols=394 Identities=11% Similarity=0.067 Sum_probs=220.1
Q ss_pred cchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHH------------------cccCC---HHHHHHHHH
Q 010807 75 EELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEEL------------------GKSDK---WLQCLEVFR 133 (500)
Q Consensus 75 ~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l------------------~~~~~---~~~A~~~~~ 133 (500)
+.+....+-+.+.+.-.+.......+......+....++.+++.+ .+.+. ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 334444555555544445555555555544444444444433332 23466 899999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHcCc-----chH
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQT--------RLAMWLFSEMRN-SGC-RPD-PSVYNALITAHLHTR-----DKA 197 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~~~-----~~~ 197 (500)
........+|++..|...+....+.++. +...++|+.... .|. .++ ...|...+....... ...
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9887632248999999988877776654 334578887664 466 554 567877776543211 134
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHH-------------------
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-------------ARNVDQVNALFKE------------------- 245 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~------------------- 245 (500)
++++.+..+|++..... ...-..+|......-.. ..+++.|...+.+
T Consensus 208 ~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 56788888888887521 11112233211111000 0112223333322
Q ss_pred ------------------------------------------------HHhCCCCCCHHHHHHHHHHHhhcCCHHHHH-H
Q 010807 246 ------------------------------------------------LHESILAPDIYTYNGVMDAYGKNGMIKEME-S 276 (500)
Q Consensus 246 ------------------------------------------------m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~ 276 (500)
.+..- .-+...|......+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22111 112222333333344556666675 7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHH
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK---------EKPT------------LPTFNSMIINY 335 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~ 335 (500)
+|++.... ++.+...|-..+....+.|+++.|.++|+.++... ..|+ ..+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77777653 33355556666677777777888887777776531 0121 23566666666
Q ss_pred HhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 336 GKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
.+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 6677777888888777765 2 12233333332222233 4477888888777765 33456667777777777788888
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 414 ADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 414 A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.++|.+.- |+......++..|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 888888777653211 23466666666677788888888887777653 3333333334444
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2.3e-10 Score=117.15 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+|+.+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.... +...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444555555555555555555554443222 3445555555555555555555555555553222 455556666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
...|++++|...|++..+.. +-+...|..+..+|...|++++|++.|++..+... -+...|..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 66666666666666655532 22355666666666666666666666666666442 24566666666666666666666
Q ss_pred HHHHHHH
Q 010807 416 LLFENSH 422 (500)
Q Consensus 416 ~~~~~m~ 422 (500)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.6e-10 Score=118.25 Aligned_cols=166 Identities=7% Similarity=0.023 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999886433 68899999999999999999999999999864 345889999999
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|...|++++|++.|++..+... -+...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999998754 368899999999999999999999999998864 3367899999999999999999
Q ss_pred HHHHHHHHHH
Q 010807 449 VQKLLKRMEQ 458 (500)
Q Consensus 449 a~~~~~~m~~ 458 (500)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=1.2e-08 Score=103.35 Aligned_cols=379 Identities=12% Similarity=0.032 Sum_probs=241.4
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQ---TRLAMWLFSEMRNSG-CRPDP 180 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~ 180 (500)
...+......+++.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+|++.+... ..|++
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 3456677778899888889999999999999987 67888999999999999999 999999999998763 24888
Q ss_pred HHHHHHHHHHHcCcc----hHHHHHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHH
Q 010807 181 SVYNALITAHLHTRD----KAKALAKALGYFQKMKGMERC-KP-NIVTYNILLRACA---------QARNVDQVNALFKE 245 (500)
Q Consensus 181 ~~~~~li~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 245 (500)
..|...+......++ ..+..+...++|+.....-|. .+ +...|...+.... ..++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 888887765542211 133456677888887654455 44 4568888886544 23457888899998
Q ss_pred HHhCCCCCCHHHHH---HHHHHHh----------hcCCHHHHHHHHHH--------------------------------
Q 010807 246 LHESILAPDIYTYN---GVMDAYG----------KNGMIKEMESVLSR-------------------------------- 280 (500)
Q Consensus 246 m~~~g~~p~~~~~~---~ll~~~~----------~~g~~~~a~~~~~~-------------------------------- 280 (500)
++......-..+|. .+...+. ...+++.|...+.+
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 88542221122221 1111100 00111222222222
Q ss_pred -----------------------------------HHhCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHhCCCCCC
Q 010807 281 -----------------------------------MKSNQCKPDIITFNLLIDSYGKRQAFDKME-QVFKSLMHSKEKPT 324 (500)
Q Consensus 281 -----------------------------------m~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 324 (500)
.... ++-+...|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 2211 0112223333333344567777786 888888764 4446
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTPS------------FITYECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~~~~~~A~~~~ 383 (500)
...|...+....+.|++++|..+|+.+.... -.|+ ..+|...+....+.|+++.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677778888888899999999998887631 0132 235777777777888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010807 384 DELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 462 (500)
Q Consensus 384 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (500)
....+.-.......|...+..-.+. ++.+.|..+|+..++. ++-+...+...+......|+.+.|..+|++.......
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9888751112233443333333333 4589999999988876 3445666678888888889999999999988866432
Q ss_pred C--CHHHHHHHHHHHhcCCCCCCCccch
Q 010807 463 P--NKRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 463 p--~~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+ ....|...++-=...|+.+....+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2234555554444555554433333
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.8e-09 Score=102.62 Aligned_cols=285 Identities=10% Similarity=0.013 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHh
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYG 266 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~ 266 (500)
..|++++|...+++...... ..+. ..++.+...+...|++++|...+++...... ..+ ..++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56779999999999775331 2222 2567778889999999999999998765311 112 233567778899
Q ss_pred hcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHH
Q 010807 267 KNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----PTLPTFNSMIINY 335 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~ 335 (500)
..|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999987653 222 2 2445677888899999999999999988754222 1245788888899
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPS--FITYE----CIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYC 406 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~ 406 (500)
...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998875321111 22221 23345778999999999999887643221 1335677889999
Q ss_pred hcCChhhHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC----CCHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNM----GVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQN----GIV----PNKRFFLEALE 473 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~----p~~~~~~~ll~ 473 (500)
..|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..+. |.. ........+++
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~ 344 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 344 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHH
Confidence 999999999999887542 222223 36667778899999999999999887653 332 12234566777
Q ss_pred HHhcCCCC
Q 010807 474 TFSSSLAG 481 (500)
Q Consensus 474 ~~~~~g~~ 481 (500)
.+......
T Consensus 345 ~~~~~~~~ 352 (373)
T 1hz4_A 345 QLIQLNTL 352 (373)
T ss_dssp HHHHTTCS
T ss_pred HHHhCCCC
Confidence 77766665
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.6e-09 Score=95.09 Aligned_cols=206 Identities=8% Similarity=-0.039 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567788888888899999999999998888765467777777888888999999999999988876433 567788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTL-------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECII 367 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li 367 (500)
.+|...|++++|++.|++..+..+. +. ..|..+...+...|++++|...|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 8889999999999999888875332 44 45777888888889999999999888875 344 45667777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
.+|... +..+++.+...+. .+...|.... ....+.+++|+..|++..+.. +-+..+...+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 776543 3444555555432 2344454443 334566889999999888763 2234444433
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.2e-09 Score=95.93 Aligned_cols=208 Identities=9% Similarity=0.019 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.|...+......+...|++++|+..|++..+....++...+..+..++...|++++|++.|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999988765467777777899999999999999999999886433 677888999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSF-------ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLE 403 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~ 403 (500)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+... - +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999988854 2344 4578888888999999999999999988642 2 2567777777
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+......++.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 776544 34455555543 33445554443 33456789999999999865 355544444443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.3e-10 Score=105.45 Aligned_cols=229 Identities=15% Similarity=0.089 Sum_probs=159.0
Q ss_pred HHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010807 231 AQARNVDQVNALFKELHE-------SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------QC-KPDIITFNLL 296 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 296 (500)
...|++++|+..|++..+ ...+....++..+...|...|++++|+..+++..+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346777777777766654 222234677888999999999999999999998754 22 2245678889
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCC-CHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHS------KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTP-SFIT 362 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~ 362 (500)
..+|...|++++|++.|++.... .. +....++..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 224567888999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC-------C-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH---hCC--CCCC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKL-------G-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSH---NMG--VTPD 429 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~-------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~--~~p~ 429 (500)
+..+...|...|++++|..+++++.+. . .......|..+...+...+....+..+..... ..+ ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988763 1 11223344444444444444433333221111 111 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888899999999999999999988753
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.6e-10 Score=104.86 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhhcC
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g 269 (500)
...+++|++++++... ...+....++..+...|...|++++|+..++++.+. +- .....++..+...|...|
T Consensus 21 ~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 21 VPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 4457777777777764 122334678999999999999999999999998754 22 223567888999999999
Q ss_pred CHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHH
Q 010807 270 MIKEMESVLSRMKSN------Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINY 335 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~ 335 (500)
++++|.+.+.+.... . .+....++..+...|...|++++|+..|++..+. +..| ...++..+...|
T Consensus 100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999998764 1 1234667888999999999999999999998764 1122 356788999999
Q ss_pred HhcCCHhHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAM-------KYTP-SFITYECIITMYGYCDN------VSRAREIFDELSKLGKDMKVSTLNAM 401 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (500)
...|++++|...++++.+. ...+ ....+..+...+...+. +..+...++..... .+....++..+
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 258 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSL 258 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 9999999999999998763 1112 22233333333333222 23333333222211 12235678889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 010807 402 LEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+|...|++++|..+|++..+.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=3.8e-09 Score=96.67 Aligned_cols=176 Identities=7% Similarity=-0.076 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAPD-IYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 271 (500)
.+++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++
T Consensus 30 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 30 SYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 44577777777665 23566778888888777766442 21111 34566666666667777
Q ss_pred HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCC
Q 010807 272 KEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKP-T----LPTFNSMIINYGKARL 340 (500)
Q Consensus 272 ~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~ 340 (500)
++|+..+++..+. |-.. -..+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|+
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 7776666665432 1000 023444555555553 55555555555544321100 0 1234444444444555
Q ss_pred HhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSF------ITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+++|...|+...+....... ..|..+..++...|++++|...|++..+
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555444443211110 1233344444444444444444444433
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=4.9e-09 Score=95.88 Aligned_cols=212 Identities=8% Similarity=-0.034 Sum_probs=156.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKPD-IITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a 309 (500)
++++|...|++. ...|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888776 34577899999999999887653 32222 56889999999999999999
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCCHHH
Q 010807 310 EQVFKSLMHSKEKP-T----LPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYT-PS----FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 310 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 378 (500)
+..|++.++..... + ..+++.+...|... |++++|...|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999876531111 1 45788999999996 9999999999988763211 11 3568889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--HcC
Q 010807 379 AREIFDELSKLGKDMKV------STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD------SSTYKLLYKAYT--KAN 444 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g 444 (500)
|+..|++..+....... ..|..+..++...|++++|+..|++..+. .|+ ...+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999986543221 26778888999999999999999998864 332 123445566664 456
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 010807 445 MKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~p~~ 465 (500)
++++|+..|+++. .+.|..
T Consensus 255 ~~~~A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFM--RLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSS--CCCHHH
T ss_pred HHHHHHHHhccCC--ccHHHH
Confidence 7888888876554 234444
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.5e-08 Score=80.10 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
|..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 3444444555555555555555544432 22344444555555555555555555555554331 234455555555555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.|++++|..+++++.... +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 22344555555555555666666555555543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=2.5e-08 Score=78.78 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444555555555666666555555543322 344455555555555555555555555544322 134444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
.|++++|.++++++..... .+...+..+...+...|++++|...++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555444321 1344444444444445555555444444443
No 91
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=6.6e-08 Score=83.69 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQ 349 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 349 (500)
|++.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 34444444444544555555555555554432 33444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 010807 350 KMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCM----NGLPTEADLLFEN 420 (500)
Q Consensus 350 ~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 420 (500)
...+.| +...+..|...|.. .+++++|.+.|++..+.+.. .++..+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 34444555555544 55566666666655554411 014555555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 010807 421 SHNMGVTPDSSTYKLLYKAYTKA-N-----MKELVQKLLKRMEQNGI 461 (500)
Q Consensus 421 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 461 (500)
..+. ..+...+..|...|... | +.++|..+|++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5554 12333455555555432 2 56666666666665553
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=4.3e-08 Score=88.26 Aligned_cols=178 Identities=12% Similarity=-0.029 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|...++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 22333333444555555555555555555444332 1134444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--c--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 353 AMKYTP-----SFITYECIITMYG--Y--CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 353 ~~~~~~-----~~~~~~~li~~~~--~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+. .| +..+...+..++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 23 1333333333311 1 124555555555554432 2222222233345555555555555554332
Q ss_pred C-----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 424 M-----GV----TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 424 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
. .. +-|+.++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 1233444444444444444 44555555543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=2e-08 Score=90.07 Aligned_cols=210 Identities=13% Similarity=-0.008 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DII 291 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~ 291 (500)
+.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++..+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345666777777788888888888888888775432 2 566777777888888888888888887765321 1 244
Q ss_pred HHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 010807 292 TFNLLIDSYGK--------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 363 (500)
Q Consensus 292 ~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 363 (500)
.+..+..++.. .|++++|+..|+++++..+. +......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56666677777 78888888888887765332 2222211100 0000000 01113
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHhCCCCCC--
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN----------GLPTEADLLFENSHNMGVTPD-- 429 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~-- 429 (500)
..+...|...|++++|+..|+.+.+..+.. ....+..+..+|... |++++|+..|+++.+. .|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 455666677777777777777766643221 234566666666654 6667777777776664 233
Q ss_pred --HHHHHHHHHHHHHcCCHHH
Q 010807 430 --SSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 430 --~~~~~~li~~~~~~g~~~~ 448 (500)
......+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 2334444444444444443
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.9e-08 Score=86.81 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=69.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
+..+|.+.|++++|+..|++.++..+. +...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 556666666666666666666654322 55666666666666666666666666666543 2345556666555544432
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 376 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 376 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
...+...+..... ..|....+..+..++...|++++|+..|++.++. .|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 2333334433321 1122222333444455566666666666666654 455433
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=1.4e-08 Score=91.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-CHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-P-TLPTF 328 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 328 (500)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++.++..+. + ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455555566666677777777777776665322 2 455566666666677777777777766654221 1 23445
Q ss_pred HHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 329 NSMIINYGK--------ARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 329 ~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
..+..++.. .|++++|...|+++.+.. |+ ......+ ..+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 555666666 666666666666665532 22 1111111 111111100 012246
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGVT-P-DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQN 459 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 459 (500)
.+..+|.+.|++++|+..|+++++.... + ....+..+..+|... |++++|...+++..+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6788999999999999999999875311 1 345778888888866 8999999999999875
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.6e-08 Score=85.97 Aligned_cols=173 Identities=10% Similarity=-0.003 Sum_probs=117.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----------------VMDAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
+......+...|++++|+..|++..+..+. +...|.. +..+|.+.|++++|+..|++..+...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 333445566677777777777776654322 3344444 78888899999999999999887754
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCHHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
. +...+..+..+|...|++++|+..|++.++..+. +..+|..+..+|...|. .+.+...++.... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3 7788888999999999999999999998886433 67788888888766544 3344555554432 122233344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
....++...|++++|...|++..+.. |+......+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 45666677889999999999988754 5655444433
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=4.2e-06 Score=82.06 Aligned_cols=224 Identities=11% Similarity=0.001 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
+.+..+|+++..... .+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence 345566777665432 34666777777777788888888888887776 223322222 2111111111 2222
Q ss_pred HhCC---------CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHH
Q 010807 317 MHSK---------EKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVSRAREIF 383 (500)
Q Consensus 317 ~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~ 383 (500)
.+.- ..+ ....|...+....+.+..+.|..+|+.. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 1110 001 1234555666666677899999999988 321 2345555433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C-
Q 010807 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN--G- 460 (500)
Q Consensus 384 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g- 460 (500)
+...+.- +-++..|...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+. +
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~ 417 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKAD 417 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhccc
Confidence 9888753 2346667777888888999999999999873 24677887777777889999999988888742 1
Q ss_pred --CCCC------------HHHHHHHHHHHhcC
Q 010807 461 --IVPN------------KRFFLEALETFSSS 478 (500)
Q Consensus 461 --~~p~------------~~~~~~ll~~~~~~ 478 (500)
-.|. ..++..++..|...
T Consensus 418 ~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 418 AILPPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp CCBCCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred ccCCcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 1111 25678888888543
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=1.1e-06 Score=79.98 Aligned_cols=221 Identities=7% Similarity=-0.043 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcc---C
Q 010807 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKR---Q 304 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~ 304 (500)
...++|+++++.++...+. +...|+.--..+...| +++++++.++.+.....+ +...|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3446888888888876544 5666777777777777 899999999988876544 444454433333 333 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------H
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------V 376 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~ 376 (500)
++++++++++.+.+..++ +..+|+.-.-.+.+.|.++ ++.+.++.+.+.. +-|...|+.-...+.+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 889999999999887544 8888888888888888888 9999999998865 4577788777777777776 8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
+++++.++.++...+ -|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++..|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999998764 489999999999999888544 556777766532 1347788999999999999999999999
Q ss_pred HHHHHC
Q 010807 454 KRMEQN 459 (500)
Q Consensus 454 ~~m~~~ 459 (500)
+.+.+.
T Consensus 282 ~~l~~~ 287 (306)
T 3dra_A 282 DLLKSK 287 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998763
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=5.1e-07 Score=81.29 Aligned_cols=230 Identities=10% Similarity=-0.041 Sum_probs=158.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 229 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (500)
-..-.|++..++.-. .+............+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344578888877733 3222222333444455777777776532 12234444555444443 322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
|+..|++....+ .++..++..+..++...|++++|..++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887765 45666677888999999999999999999877653 2357788899999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 388 KLGKDM-----KVSTLNAMLEA--YCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 388 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.. | +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 853 4 24555566655 33334 899999999999776 56644445555689999999999999997765
Q ss_pred C-----CC----CCCHHHHHHHHHHHhcCCC
Q 010807 459 N-----GI----VPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 459 ~-----g~----~p~~~~~~~ll~~~~~~g~ 480 (500)
. .. +-+..++..++......|.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 3 11 3355666577666666665
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.6e-07 Score=81.24 Aligned_cols=176 Identities=7% Similarity=-0.034 Sum_probs=111.9
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC----CHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----MIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~ 277 (500)
+|+++|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|++.
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45566666665 3466777777777777777777777777777654 55666666666666 5 67777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGK----ARLQGKAEYVF 348 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 348 (500)
|++..+.| +...+..|...|.. .+++++|++.|++..+.+.. .....+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45566666666665 66777777777777665431 015566666666666 56667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHCC
Q 010807 349 QKMTAMKYTPSFITYECIITMYGYC------DNVSRAREIFDELSKLG 390 (500)
Q Consensus 349 ~~m~~~~~~~~~~~~~~li~~~~~~------~~~~~A~~~~~~~~~~~ 390 (500)
++..+. ..+...+..|..+|... .+.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666654 12333455555555432 26666666666666655
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=7.4e-09 Score=106.33 Aligned_cols=173 Identities=6% Similarity=-0.076 Sum_probs=143.7
Q ss_pred hhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 266 GKNGMIKEMESVLSRMK--------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 432 336677888899999999999999999999886433 78899999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
.|++++|...|++..+.. +-+...+..+..+|...|++++ .+.|++..+.+. -+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 3457888999999999999999 999999998764 3688999999999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 010807 418 FENSHNMGVTPD-SSTYKLLYKAYTKANM 445 (500)
Q Consensus 418 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 445 (500)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998876 454 5677777777766554
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=9e-09 Score=83.72 Aligned_cols=146 Identities=12% Similarity=0.053 Sum_probs=99.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
|...+...|++++|+..++....... .+...+..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 44556667788888888877754311 134456667778888888888888888887754 3457788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL-FENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+++|...|++..+..+ -+..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888887653 2577888888888888888776654 46666643 2355666666556655553
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.4e-08 Score=104.23 Aligned_cols=174 Identities=7% Similarity=-0.077 Sum_probs=145.3
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 231 AQARNVDQVNALFKELH--------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999998 432 236678888999999999999999999999886443 77889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
.|++++|++.|++..+..+. +...|..+..+|.+.|++++ ...|++..+.. +-+...|..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886443 67889999999999999999 99999998864 44678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 383 FDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
|+++.+.+. -+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999988652 246778888888766555
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.6e-08 Score=83.39 Aligned_cols=156 Identities=7% Similarity=0.007 Sum_probs=72.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARL 340 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~ 340 (500)
...+.+.|++++|...|++..+.... +...+..+..++...|++++|+..|++.....+ +...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcc
Confidence 33444555555555555544433211 344455555555555555555555555443322 22222211111 111112
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
..+|...++...+.. +-+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223445555544432 2234555555555555555555555555555543322 23455555555555555555555555
Q ss_pred HH
Q 010807 420 NS 421 (500)
Q Consensus 420 ~m 421 (500)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=8.1e-08 Score=96.74 Aligned_cols=154 Identities=7% Similarity=-0.099 Sum_probs=116.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
.|++++|++.+++..+.... +...+..+...|...|++++|++.|++..+... .+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988776433 678888999999999999999999999988643 3688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN---GLPTEADLLFENSHNM 424 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 424 (500)
+++..+.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988864 44678889999999999999999999999988653 3678888999999999 9999999999998876
Q ss_pred C
Q 010807 425 G 425 (500)
Q Consensus 425 ~ 425 (500)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=7.8e-08 Score=87.55 Aligned_cols=163 Identities=8% Similarity=-0.096 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-FNSMIIN 334 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 334 (500)
..+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..++++.... |+... .......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 44444555555666666666666666554322 45556666666666666666666666655432 23222 2222223
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhh
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 413 (500)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+..... +...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445556666666666666543 3456666667777777777777777777776654321 25566777777777777777
Q ss_pred HHHHHHHHH
Q 010807 414 ADLLFENSH 422 (500)
Q Consensus 414 A~~~~~~m~ 422 (500)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666543
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=6.5e-08 Score=97.42 Aligned_cols=156 Identities=7% Similarity=-0.098 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
.|++++|++.|++..+.... +...+..+...+.+.|++++|.+.+++..+.... +...+..+..+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999998876443 6788999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKL 389 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~ 389 (500)
|++..+... .+...+..+..+|...|++++|...+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988643 368899999999999999999999999998864 44678899999999999 9999999999999887
Q ss_pred CCC
Q 010807 390 GKD 392 (500)
Q Consensus 390 ~~~ 392 (500)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 643
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=4e-08 Score=79.83 Aligned_cols=140 Identities=6% Similarity=-0.104 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|++++|+..+++..... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 6788888888888876421 223445667888888888888888888888776544 6777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV-FKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
..|++..+.... +...+..+...|.+.|++++|.+. +++..+..+ -+..+|......+...|+
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 888887776433 567777777788888877665554 466665432 256666666666655553
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=3.1e-07 Score=80.28 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILA-P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDI-ITFNL 295 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~-~~~~~ 295 (500)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445555666677777777777777777664322 1 1345666677777777777777777777665322 111 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCD 374 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 374 (500)
+..++...+.. .+ ..|..+...+...|++++|...|+.+.+.. |+ ...+......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 33333322110 00 011112222334556666666666666542 22 1111111000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD----SSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~ 450 (500)
..+...+ ......+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 0000000 011123456677777777777777777664 232 245666777777777777777
Q ss_pred HHHHHHHHC
Q 010807 451 KLLKRMEQN 459 (500)
Q Consensus 451 ~~~~~m~~~ 459 (500)
+.++.+...
T Consensus 205 ~~~~~l~~~ 213 (225)
T 2yhc_A 205 KVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 777776655
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=4.4e-08 Score=82.05 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=105.9
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
....-..+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..|+..... .|+...+..+.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 3444455566788888888888877653 556788888888888899999999888887664 234433322211111
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 270 (500)
. ..+...+|+..|++..... +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 85 ~---~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 85 H---QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp H---HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred H---hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 0 1122233566676666432 3456777777777888888888888887777665432 34566777777777777
Q ss_pred HHHHHHHHHHHH
Q 010807 271 IKEMESVLSRMK 282 (500)
Q Consensus 271 ~~~a~~~~~~m~ 282 (500)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=2.5e-07 Score=85.09 Aligned_cols=184 Identities=9% Similarity=-0.030 Sum_probs=100.1
Q ss_pred HHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 010807 264 AYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEKP-TLPTFNSMII 333 (500)
Q Consensus 264 ~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 333 (500)
.|...|++++|...|.+..+. +-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544321 1000 1234555566666666666666666654332 1110 1245566666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTP-----SFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMK-VSTLNAMLE 403 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~ 403 (500)
.|.. |++++|...|++..+..... ...++..+...|...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777776666655421000 1345667777777777777777777776652 11111 235666666
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPD------SSTYKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~ 452 (500)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777788888888888776 3 221 12344455555 56666665553
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4e-07 Score=79.53 Aligned_cols=207 Identities=11% Similarity=-0.026 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--
Q 010807 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDI-- 255 (500)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-- 255 (500)
+...+..+...+. ..|++++|+..|+++.....-.+. ...+..+..++.+.|++++|+..|+++.+.......
T Consensus 3 ~~~~~~~~a~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKL----QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 4556666777777 888999999999999863211222 457888999999999999999999999876543221
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
..+..+..++.+.|.. .+ ..|..+...+...|++++|+..|+++++..+. +...+......
T Consensus 79 ~a~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l- 139 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL- 139 (225)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH-
Confidence 2344444444433211 11 11233444556678889999999988876432 22222211110
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 413 (500)
..+...+. .....+...|.+.|++++|...|+.+.+..+.. ....+..+..+|.+.|++++
T Consensus 140 ---------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 ---------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00001100 112345667788888888888888888754321 12567778888888888888
Q ss_pred HHHHHHHHHhCC
Q 010807 414 ADLLFENSHNMG 425 (500)
Q Consensus 414 A~~~~~~m~~~~ 425 (500)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 888888877763
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=1e-07 Score=87.76 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHhhcC-----CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGM-----ERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESILAP-D----IYTYNGV 261 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~-----~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~----~~~~~~l 261 (500)
..|++++|.+++++.... .+..++ ...|+.....|...|++++|...|.+..+..... + ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999876531 111344 2368888888999999999999999876532111 1 3578888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSM 331 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 331 (500)
...|.+.|++++|+..|++..+. |-.. -..++..+..+|.. |++++|+..|++..+..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 89999999999999999987643 2111 14577888889988 99999999999876532111 14678889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHH
Q 010807 332 IINYGKARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDM-K---VSTLNAML 402 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~---~~~~~~li 402 (500)
...|...|++++|...|++.... +..+. ...+..++.++...|++++|...|++.. ..... + ......++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999988763 21111 2356677778888899999999999988 43221 1 12344455
Q ss_pred HHHHhcCChhhHHH
Q 010807 403 EAYCMNGLPTEADL 416 (500)
Q Consensus 403 ~~~~~~g~~~~A~~ 416 (500)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 554 5666655554
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=2.3e-06 Score=77.80 Aligned_cols=232 Identities=9% Similarity=0.024 Sum_probs=114.0
Q ss_pred HHHHHcccCCH-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 115 LFEELGKSDKW-LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 115 l~~~l~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.+..+.+.+.+ ++|++.++.+.... +.+..+|+.--.++...| ++++++++++.+.... +-+...|+.--..+.
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 34443344433 56777777777653 445666777777777777 7777777777776642 123334443322221
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA---RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (500)
+. + ... +++++++.+++.+.+...+ |..+|+.-.-.+.+.
T Consensus 115 ~~-------------~-----------------------~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l 157 (306)
T 3dra_A 115 QI-------------M-----------------------ELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTF 157 (306)
T ss_dssp HH-------------H-----------------------HHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HH-------------H-----------------------HhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 00 0 111 3445555555555544333 445555444444444
Q ss_pred CCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 269 GMIK--EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA------FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 269 g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
|.++ ++++.++++.+.... |...|+.-.....+.+. ++++++.+++++...+. |...|+.+...+.+.|+
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 5444 555555555554333 44444444333334333 55555555555554332 55555555555555444
Q ss_pred HhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGK-AEYVFQKMTAMK--YTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
... +..+...+...+ -..+...+..+..+|.+.|+.++|.++++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 236 SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 222 223333332211 122344555555555555555555555555544
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=1.9e-06 Score=78.57 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=98.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQC-KPDI----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNS 330 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 330 (500)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++....... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888877766422 1221 13334666667777888888888777763221 12 235777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTA----M-KYTPS-FITYECIITMYGYCDNVSRAREIFDELSK----LGKDMK-VSTLN 399 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~~ 399 (500)
+..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777777663 1 11111 23566677777777777777777766554 111111 45666
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHH
Q 010807 400 AMLEAYCMNGL-PTEADLLFENSH 422 (500)
Q Consensus 400 ~li~~~~~~g~-~~~A~~~~~~m~ 422 (500)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66777777773 467766666554
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.3e-06 Score=79.64 Aligned_cols=165 Identities=10% Similarity=0.071 Sum_probs=126.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CC----HHHH
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PS----FITY 363 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 363 (500)
...+..+...|++++|.+++++..+.... ++. ..+..+...+...+++++|...++........ ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33467788999999999999998875322 221 13345667777788999999999999884322 22 3468
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSK----L-GKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTPD-SST 432 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 432 (500)
+.+...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998874 1 1111 2347889999999999999999999987642 22233 678
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010807 433 YKLLYKAYTKAN-MKELVQKLLKRMEQ 458 (500)
Q Consensus 433 ~~~li~~~~~~g-~~~~a~~~~~~m~~ 458 (500)
|..+..++.+.| ++++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999999 57999999988764
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.7e-07 Score=85.25 Aligned_cols=165 Identities=7% Similarity=-0.094 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-LLI 297 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li 297 (500)
+...+..+...+...|++++|...|++....... +...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666666677777777777766665433 55666666667777777777777776665542 3332222 222
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNV 376 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~ 376 (500)
..+...++.+.|+..+++.....+ .+...+..+...+...|++++|...|..+.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234455666666666666666433 25666667777777777777777777776664311 1145666677777777777
Q ss_pred HHHHHHHHHHH
Q 010807 377 SRAREIFDELS 387 (500)
Q Consensus 377 ~~A~~~~~~~~ 387 (500)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=1.8e-05 Score=72.76 Aligned_cols=223 Identities=8% Similarity=-0.006 Sum_probs=159.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-C-CHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-Q-AFDK 308 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~~~ 308 (500)
+.+..++|+++++.++..... +..+|+.--..+...| .+++++++++.+.....+ +...|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 344556788888888876554 5666777666777777 588888888888887655 666776655555554 5 7788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-----
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--------KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN----- 375 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----- 375 (500)
++++++.+.+...+ +..+|+--.-.+.+.|.++ ++.+.++++.+.. +-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 88888888876444 7777777666666655555 8888888888865 4578888888888877776
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCC
Q 010807 376 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP--------------------TEADLLFENSHNMG-----VTP 428 (500)
Q Consensus 376 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~p 428 (500)
++++++.++++....+ -|...|+.+-..+.+.|+. ....++..++...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7889999988888754 4788998888888777764 22333333333321 135
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
....+..|+..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7888899999999999999999999998654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.2e-06 Score=75.64 Aligned_cols=128 Identities=11% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.+..+...+...|++++|+..|++. +.++...|..+..+|...|++++|...++...+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445556666777777777777665 34466677777777777777777777777766643 335666677777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 372 YCDNVSRAREIFDELSKLGKDM---------------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|++++|...|+...+..... ....+..+..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777766643221 1255666666667777777777777766654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=3.2e-06 Score=77.02 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=105.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---CCC--HH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL-----PTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FI 361 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 361 (500)
.+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666777777777777766654322111 2233455556667778888877777765321 111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSK---LGK-DM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTP-DS 430 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 430 (500)
+++.+...|...|++++|...|++..+ ... .+ ...++..+..+|...|++++|+..+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888877662 111 11 1257777888888888888888888876542 1111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 010807 431 STYKLLYKAYTKANMKELV-QKLLKRME 457 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a-~~~~~~m~ 457 (500)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777788888888888888 66676654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.4e-06 Score=75.16 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=59.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (500)
..+...|++++|.+.|++.. .|+...+..+..+|...|++++|++.|++..... +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 33444444444444444331 2344444444444444455555555444444432 123444444555555555555
Q ss_pred HHHHHHHHHHhCCC--------------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 343 KAEYVFQKMTAMKY--------------TP-SFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 343 ~a~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
+|...|+...+... .| ....+..+..+|...|++++|.+.|+...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 55555555444221 01 12455556666666666666666666666543
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=8.9e-06 Score=79.74 Aligned_cols=317 Identities=9% Similarity=-0.011 Sum_probs=197.2
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHcCcchHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQ-TRLAMWLFSEMRNS-GCRP-DPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~~~~~~~ 199 (500)
+.++.+..+|+..... .|++..|...+....+.+. .+....+|+..... |..| +...|...+..+.......++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 8899999999999884 4699999999999888874 45678889988764 5444 678888887766543335788
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-------------RNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 266 (500)
++.+..+|++..... ...-...|......-... +.+..|..+++++...-...+...|...+..-.
T Consensus 105 ~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 105 IEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 999999999998621 111122344333221111 122334444544432100113345555554432
Q ss_pred hcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010807 267 KNG--M-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339 (500)
Q Consensus 267 ~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (500)
..+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|....
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhc
Confidence 221 1 345778899888753 336778888888888999999999999999987 32333332 232221
Q ss_pred CHhHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 340 LQGKAEYVFQKMTAMK---------YTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
..++. ++.+.+.- ..+ ....|...+....+.++++.|..+|+.. .. ...+..+|-.....-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence 11222 22222110 001 1245666777777788999999999999 32 22345555433322222
Q ss_pred -cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 408 -NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 408 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.++.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|++.
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 336999999999988753 223555666777778899999998888775
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=4.1e-06 Score=76.34 Aligned_cols=167 Identities=7% Similarity=-0.066 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---CCC--HH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPT--LP 326 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 326 (500)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677888888888888887776532211 12234466667888899999999998875322 112 45
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLG----KDM-KV 395 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~ 395 (500)
+|+.+...|...|++++|...+++..+. ...++ ..++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999988731 01122 2588899999999999999999999876521 111 26
Q ss_pred HHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 010807 396 STLNAMLEAYCMNGLPTEA-DLLFENSHN 423 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 423 (500)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777877653
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.6e-06 Score=71.22 Aligned_cols=129 Identities=12% Similarity=-0.029 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666677777777777777766643 3356667777777777777777777777777654 23567777777778
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK--AYTKANMKELVQKLLKRME 457 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~ 457 (500)
...|++++|...|++..... +.+...+..+.. .+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888777653 224444433333 3667788888887776654
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1.5e-06 Score=68.00 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
.....|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+. .+...|..+..+|...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCC
Confidence 33344444444444444444433322 22333444444444444444444444444443321 13344444444444444
Q ss_pred ChhhHHHHHHHHHh
Q 010807 410 LPTEADLLFENSHN 423 (500)
Q Consensus 410 ~~~~A~~~~~~m~~ 423 (500)
++++|++.|++.++
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=4.6e-07 Score=77.38 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=85.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHhccCCH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA----MKYT-PSFITYECIITMYGYCDNV 376 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~~~~ 376 (500)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+ .+.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555665543333221 222345555566666666666666666655544 1111 1234556666666777777
Q ss_pred HHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC
Q 010807 377 SRAREIFDELSKL----GKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANM 445 (500)
Q Consensus 377 ~~A~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~ 445 (500)
++|.+.+++..+. +-. .....+..+...+...|++++|...+++.....- ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777776665542 101 1134566667777777777777777776553200 111 2335666667777788
Q ss_pred HHHHHHHHHHHHHC
Q 010807 446 KELVQKLLKRMEQN 459 (500)
Q Consensus 446 ~~~a~~~~~~m~~~ 459 (500)
+++|...+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766643
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=1.9e-06 Score=70.74 Aligned_cols=129 Identities=8% Similarity=-0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 370 (500)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 370 (500)
..+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3455666667777777777777777666432 256677777777777777777777777776653 34566777777777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhhHHHHHHHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAML--EAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 422 (500)
...|++++|...|++..+... .+...+..+. ..+...|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888887776543 2444553333 33667778888877776643
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.8e-06 Score=67.55 Aligned_cols=97 Identities=6% Similarity=-0.055 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 34555566666666666666666666554332 4555666666666666666666666665554322 455555566666
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 010807 301 GKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~ 319 (500)
...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666655553
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=3.5e-06 Score=65.11 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444445555555555554444432 2234444445555555555555555555544432 12344455555555
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|...++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=6.2e-07 Score=76.57 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHh
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~ 342 (500)
.|++++|.++++.+... .......+..+...|...|++++|...+++..+. +.. ....++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533333221 1123444555555555555655555555554431 111 12344555566666666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCh
Q 010807 343 KAEYVFQKMTAM----KYTP--SFITYECIITMYGYCDNVSRAREIFDELSK----LGKD-MKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 343 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~ 411 (500)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+.. .-..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666555432 1011 133456666667777777777777766553 1110 0123356667777777888
Q ss_pred hhHHHHHHHHHh
Q 010807 412 TEADLLFENSHN 423 (500)
Q Consensus 412 ~~A~~~~~~m~~ 423 (500)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776543
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=3.5e-05 Score=70.75 Aligned_cols=138 Identities=9% Similarity=0.001 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH-H-
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA-K- 198 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-~- 198 (500)
.+..++|+++++.+.... +-+..+|+.--.++...| .+++++.+++.+.... +-+...|+.--..+. .. +
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~----~l~~~ 139 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD----RISPQ 139 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH----HHCCS
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----HhcCC
Confidence 344567888888888764 556677888777777777 4888888888887653 235556666555444 22 2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD--------QVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
++++++++++++.... +.|...|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 140 ~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred ChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 4567777777776533 556666665555554444444 555555555554333 4445554444444444
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=6.6e-07 Score=81.08 Aligned_cols=195 Identities=8% Similarity=-0.040 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4567777888888888888888888888776433 6777888888888888888888888888776433 6777888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
+|...|++++|+..|++..+..+. +...+...+....+ ..++.. +..........+......+...+ .|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 888888888888888877653211 00011111111111 111111 12222333344444444443322 577888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHh
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHN 423 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 423 (500)
|.+.++...+... .+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888877776532 2333444444444444 567788888877654
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=3.6e-06 Score=67.96 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
...+..+...+.+.|++++|...|+...... +-+...|..+..+|...|++++|+..|++..+..+ -++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3455555666666666666666666666543 33455666666666666666666666666666542 245566666666
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...|++++|+..|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=3.6e-06 Score=65.06 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|++++|..+++++.+... .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45566666667777777777777777665432 2455666666666666666666666666655432 245556666666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
|...|++++|...|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 6666666666666666655422 2344444444333
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=8.2e-07 Score=80.46 Aligned_cols=194 Identities=6% Similarity=-0.037 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5567788888999999999999999999886433 788899999999999999999999999988643 37888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
+|...|++++|...|+...+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999887642 110 011111111111 111111 2223333344455555544333 368899
Q ss_pred hHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 010807 413 EADLLFENSHNMGVTPDSSTY-KLLYKAYTKA-NMKELVQKLLKRMEQN 459 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~-g~~~~a~~~~~~m~~~ 459 (500)
+|++.+++..+. .|+.... ..+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888765 5554433 3333334444 6788899999877653
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=3.1e-06 Score=66.40 Aligned_cols=117 Identities=8% Similarity=-0.093 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 34455555555666666666666666555542 22455555566666666666666666666555432 24555666666
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 443 (500)
+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666655432 11233444444444433
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=4.5e-06 Score=65.10 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=39.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|+..|++...... .+...+..+...+...|++++|...++...... +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33344444444444444444444433211 133344444444444444444444444444321 1223344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELSK 388 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~ 388 (500)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=3.1e-06 Score=66.37 Aligned_cols=118 Identities=9% Similarity=-0.024 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+.+...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 344566777777777777777777777777665332 5666666666777777777777777766654322 45566666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
..+|.+.|++++|++.|++..+.... +...+..+..++..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666777777777777666554221 33444444444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=3.8e-06 Score=65.50 Aligned_cols=119 Identities=10% Similarity=-0.033 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+...|++++|...|++....... +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 3445666667777777777777777776654322 5566666666677777777777777766654322 4556666666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
+|...|++++|...|++..+... .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66677777777777766665432 245555555555555544
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=4.1e-06 Score=67.67 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
...+..+...+.+.|++++|...|+++.+..+ -+...|..+..+|...|++++|+..|++..... +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 55778888999999999999999999999763 478999999999999999999999999998864 3467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 440 YTKANMKELVQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 466 (500)
|.+.|++++|...|++..+.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999999764 5554
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=9.6e-07 Score=73.72 Aligned_cols=120 Identities=11% Similarity=0.132 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNV--SR 378 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 378 (500)
..|++++|+..+++...... .+...|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555566666655554322 245555666666666666666666666655532 2244455555555 5555665 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++.+.+... .+...+..+..+|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666655432 24555556666666666666666666665554
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=4.9e-06 Score=77.43 Aligned_cols=138 Identities=11% Similarity=-0.071 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...+..+...|.+.|++++|+..|++.++........ ..+.+..+- +.....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45566777777777778888877777776643322100 000000000 000234444555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432 244455555555555555555555555554432 2234445555555555555554
Q ss_pred H
Q 010807 449 V 449 (500)
Q Consensus 449 a 449 (500)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=3.2e-06 Score=78.72 Aligned_cols=145 Identities=10% Similarity=-0.056 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...|.+.|++++|+..|++..+....... . ..+.+.++- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 5678888999999999999999999998876433110 0 001111100 0 01234555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 23455566666666666666666666666665432 245566666666666666666
Q ss_pred H-HHHHHHH
Q 010807 414 A-DLLFENS 421 (500)
Q Consensus 414 A-~~~~~~m 421 (500)
| ..+|..|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=1.6e-06 Score=77.05 Aligned_cols=187 Identities=8% Similarity=-0.077 Sum_probs=112.6
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------------
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKL-------IAVMGKKGQTRLAMWLFSEMRNSGCRPDP------------- 180 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------- 180 (500)
..++...|++.|..+.+.. +.....|..+ ..++.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 3589999999999999874 5567788888 5666666666666665555443 23321
Q ss_pred ---------HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 181 ---------SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 181 ---------~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
..+-.+...+. ..|++++|.++|+.+... .|+......+...+.+.+++++|+..|+......
T Consensus 94 ~~~~v~~r~dl~LayA~~L~----~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEA----AQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHH----HHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred cccccCCHhHHHHHHHHHHH----HCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 11222333344 667777777777777642 3433355555567777777777777776443321
Q ss_pred CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 252 APD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 252 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 110 23455666667777777777777776654322132 223444555666667777777777766654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=5.3e-06 Score=69.11 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=101.5
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--h
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLP--T 412 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 412 (500)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+... .+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45688899999999888754 45688999999999999999999999999988653 368888888888 8899998 9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+|...++++.... +.+...+..+...+...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998864 3467888999999999999999999999998763
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.7e-06 Score=69.87 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 334444445555555555555555544432 22344444555555555555555555555544332 1344444455555
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|+..|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554443
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=7e-06 Score=72.92 Aligned_cols=126 Identities=8% Similarity=-0.101 Sum_probs=64.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcc
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYC 373 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~ 373 (500)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555666666666666555432 222244444445566666666666665333211 010 22445555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 374 DNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666555332212 2234445555556666666666666665554
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00015 Score=66.22 Aligned_cols=182 Identities=7% Similarity=0.006 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ--AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-QGKAEYV 347 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 347 (500)
+++++.+++.+.....+ +..+|+.-..++.+.+ ++++++.+++.+.+..+. +...|+.-...+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45666666666655433 5555554444444444 366666666666665333 56666666555566665 4666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYC--------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN----- 408 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 408 (500)
+..+.+.. +-|...|+.....+.+. +.++++++.+.......+ -|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 66666654 33555555444444333 346777888877777653 3677777665555554
Q ss_pred ------CChhhHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHC
Q 010807 409 ------GLPTEADLLFENSHNMGVTPDSSTYKLLYK-----AYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 409 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467788888888775 4543 2322211 222356777788888887753
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=6.1e-07 Score=76.54 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
.+..+..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|+..|++..... +-+...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444432 1234444444444444444444444444444332 123334444444444
Q ss_pred HcCCHHHHH
Q 010807 442 KANMKELVQ 450 (500)
Q Consensus 442 ~~g~~~~a~ 450 (500)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444333
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=1.9e-06 Score=69.55 Aligned_cols=98 Identities=9% Similarity=-0.094 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+...|++++|+..|+........ +...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3445556666666677777777777666654333 5556666666666666666666666666554322 4455556666
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~ 318 (500)
+|...|++++|++.|+..++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=7.5e-06 Score=63.77 Aligned_cols=95 Identities=11% Similarity=-0.109 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
.+..+...+...|++++|...|++..+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444555555555555555555555432 245555555555555555555555555555442 223445555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQ 458 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (500)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555543
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=9.9e-06 Score=63.31 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCC----HHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG--VTPD----SSTYKL 435 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 435 (500)
.+..+...+.+.|++++|+..|++..+..+ -+...|+.+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555555432 245555555556666666666665555554321 0111 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+..++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666665554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1e-05 Score=63.22 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMK----VSTLNAM 401 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 401 (500)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.+++..+... ..+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4444445555555555555555544432 22344455555555555555555555554443211 001 1245555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
..++...|++++|++.|++.+.. .||..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 55666666666666666665543 344433
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.5e-05 Score=74.37 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
+..+...|...|++++|.+.+..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555555444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=2.8e-05 Score=59.14 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+..+...+...|++++|...|+........ +...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555555666666666666666665554322 4455555555555666666666666655554222 444555555555
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 010807 301 GKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~ 319 (500)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5556666666666555543
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=3e-05 Score=58.96 Aligned_cols=94 Identities=11% Similarity=-0.050 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 12333444444444444444444444444444321 133444444444444
Q ss_pred cCChhhHHHHHHHHHh
Q 010807 408 NGLPTEADLLFENSHN 423 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~ 423 (500)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2e-05 Score=61.31 Aligned_cols=97 Identities=8% Similarity=-0.142 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..|..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|+..+++..+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 344555555666666666666666665543 33455666666666666666666666666666542 2456666666666
Q ss_pred HhcCChhhHHHHHHHHHhC
Q 010807 406 CMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~ 424 (500)
...|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.4e-05 Score=74.46 Aligned_cols=202 Identities=11% Similarity=-0.005 Sum_probs=138.2
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIAD---------------TGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCR 177 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 177 (500)
.-.+.+.+.|++++|++.|..+.+...-..+ ..++..+...|.+.|++++|.+.+..+.+. +..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3445566779999999999999876422211 134788999999999999999999987653 111
Q ss_pred CCHH---HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 010807 178 PDPS---VYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES- 249 (500)
Q Consensus 178 p~~~---~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 249 (500)
++.. .....+..+.. ..|.+++|+.+++..... .....-..++..+...|...|++++|..+++++...
T Consensus 89 ~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQ---VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHHHHHHHCS---CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 2222 22222333322 345577777777665421 112223567888999999999999999999987543
Q ss_pred -CC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 250 -IL--AP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 250 -g~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
+. .+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 11 2467888899999999999999999887542 22211 34567777888889999999888876643
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.0022 Score=58.53 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=107.7
Q ss_pred cCCHH-HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCcc------hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010807 158 KGQTR-LAMWLFSEMRNSGCRPDP-SVYNALITAHLHTRD------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229 (500)
Q Consensus 158 ~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (500)
.|.++ +|+.+++.+... .|+. ..|+.--..+...+. ....+++++.+++.+.... +-+..+|+.-...
T Consensus 42 ~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wl 117 (331)
T 3dss_A 42 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 117 (331)
T ss_dssp TTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34443 567777777654 3433 334432222221000 1123678888888887532 5677788877777
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---
Q 010807 230 CAQAR--NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR--- 303 (500)
Q Consensus 230 ~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 303 (500)
+.+.+ .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 478888888888887655 77888777777777777 58888888888877555 666776555444433
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 304 -----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 304 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
+.++++++.+...+...+. |...|+-+-..+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3456677777766664333 56666544444443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=1.4e-05 Score=63.82 Aligned_cols=96 Identities=10% Similarity=-0.056 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|+....... .+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 344444555555666666666666555533 23455555555556666666666666665555432 2444555555556
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655544
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2.3e-05 Score=66.60 Aligned_cols=159 Identities=10% Similarity=0.014 Sum_probs=107.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---------------HHH
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT---------------LPT 327 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~ 327 (500)
......|+++++.+.++.-.... ......+..+...+...|++++|+..|++......... ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444555666665555322221 11455677888889999999999999999987533211 278
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
|..+..+|...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... -+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHH
Confidence 8889999999999999999999998864 45688889999999999999999999999988653 367888888888888
Q ss_pred cCChhhHH-HHHHHHHhC
Q 010807 408 NGLPTEAD-LLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~-~~~~~m~~~ 424 (500)
.++.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88777776 555555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=2.7e-05 Score=61.44 Aligned_cols=97 Identities=9% Similarity=-0.089 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+... .+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34455555555555555555555555554432 22344555555555555555555555555554332 23445555555
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~ 422 (500)
+|...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=2.2e-05 Score=64.44 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...|++..+.. +-+...|..+..+|...|++++|+..|++..+... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777778888888888888888877754 33677777888888888888888888888877653 35777888888
Q ss_pred HHHhcCChhhHHHHHHHHHhC
Q 010807 404 AYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+|...|++++|+..|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877664
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=9.9e-06 Score=64.71 Aligned_cols=97 Identities=14% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...+..+...+.+.|++++|+..|+........ +...|..+..++.+.|++++|+..|++....... +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344555666666777777777777766655433 5566666666666666666666666666655332 44555566666
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 010807 300 YGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~ 318 (500)
|...|++++|++.|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=2.3e-05 Score=64.26 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.+...|..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566777777888888888888888887765433 6677777777788888888888888877766433 566777777
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777888888888888777664
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=2.3e-05 Score=59.07 Aligned_cols=93 Identities=10% Similarity=-0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYC 406 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 406 (500)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 333344444444444444444443322 2233444444444444444444444444444432 11 2444444444455
Q ss_pred hc-CChhhHHHHHHHHHh
Q 010807 407 MN-GLPTEADLLFENSHN 423 (500)
Q Consensus 407 ~~-g~~~~A~~~~~~m~~ 423 (500)
.. |++++|.+.+++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 55 555555555544444
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=3.9e-05 Score=60.45 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.+...|..+...+...|++++|+..|+........ +...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 34556666666666666666666666666554332 4555566666666666666666666665554322 455555556
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 010807 298 DSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~ 318 (500)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655543
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=8.7e-05 Score=59.15 Aligned_cols=96 Identities=9% Similarity=-0.101 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 435 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 435 (500)
...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3444444444444555555555555444432 22 3444445555555555555555555544432 223444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.9e-05 Score=61.46 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHHH
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMK----VSTLNAML 402 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~li 402 (500)
..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333344444444444444444443322 22333444444444444444444444444433211 011 33444444
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 010807 403 EAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+|...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444555555544444444
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=2.5e-05 Score=58.79 Aligned_cols=100 Identities=9% Similarity=-0.155 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLID 298 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~ 298 (500)
...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445556666677777777777777776655332 5566666666677777777777777776665211 03556666666
Q ss_pred HHhcc-CCHHHHHHHHHHHHhCC
Q 010807 299 SYGKR-QAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~~ 320 (500)
++.+. |++++|++.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777666543
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=2e-05 Score=61.34 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITFN 294 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~ 294 (500)
..|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++....... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666677777777777666654322 4555666666666666666666666665543211 11 44555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
.+..+|...|++++|.+.|++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666666666655
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=9.2e-05 Score=59.02 Aligned_cols=94 Identities=9% Similarity=-0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
.+..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|++++|...++...+.. +.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 3334444444444444444444444332 122 2333333334444444444444444333321 11233333333
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.++...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444443333
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.4e-05 Score=64.87 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444445555555555555555443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=3.3e-05 Score=59.66 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=43.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+...+.+.|++++|...|++..+... -+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 33444445555555555555544332 234445555555555555555555555544432 1234444455555555555
Q ss_pred HHHHHHHHHHHH
Q 010807 446 KELVQKLLKRME 457 (500)
Q Consensus 446 ~~~a~~~~~~m~ 457 (500)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=2e-05 Score=63.95 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS---- 359 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~---- 359 (500)
..++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|...++...+... ..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888999999999999999987653211 12 24788889999999999999999998765311 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKL----GKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999987753 211 1235677888899999999999999998765
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=3.8e-05 Score=59.32 Aligned_cols=95 Identities=7% Similarity=-0.101 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..|++..+..+ -+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3445556666677777777777666643 33566666666777777777777777777666543 246666677777777
Q ss_pred cCChhhHHHHHHHHHhC
Q 010807 408 NGLPTEADLLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~ 424 (500)
.|++++|+..|++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766653
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=6.7e-05 Score=72.95 Aligned_cols=146 Identities=12% Similarity=0.001 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
....+..+...|.+.|++++|+..|++.++....... + ..+.... .. ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 3445666667777777777777777766653222110 0 0000000 00 001345555566
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655432 245566666666666666666666666665542 2233455555555555555554
Q ss_pred HHH-HHHHHH
Q 010807 449 VQK-LLKRME 457 (500)
Q Consensus 449 a~~-~~~~m~ 457 (500)
+.+ .+++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 442 334443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.4e-05 Score=61.28 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 374 DNVSRAREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
|++++|+..|++..+.+ -+-+...+..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555544432 11123444455555555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHHH
Q 010807 452 LLKRMEQ 458 (500)
Q Consensus 452 ~~~~m~~ 458 (500)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=3.6e-05 Score=75.26 Aligned_cols=120 Identities=11% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...+..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 33455566666666666666654322 4566666666666666666666666666655322 455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIIN--YGKARLQGKAEYVFQ 349 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 349 (500)
++|++.|++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666554222 22233333333 555566666666655
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=0.00017 Score=55.98 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=39.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKV---STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYT 441 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 441 (500)
..+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+++.... +.+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHH
Confidence 3344444444444444444443211 11 234444444445555555555555444431 111 333444444455
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQ 458 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (500)
..|++++|...|++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=2.6e-05 Score=76.26 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=86.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456677888888888888777532 257788888888888888888888888888764 3457778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhhHHHHHH
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEA--YCMNGLPTEADLLFE 419 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 419 (500)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888775432 34455555555 778888888888887
No 182
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00047 Score=54.48 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=70.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEA 414 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 414 (500)
+++++|...|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 23332 5555666666666777776666654 46666666666666 5667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (500)
+.+|++..+.| +...+..|...|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777766654 45566666666666 6677777777777666653
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=0.00012 Score=71.07 Aligned_cols=122 Identities=6% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPD--------------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
...|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677778888888888888888888776432211 2444444444444455555544444444432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (500)
.. +...|..+..+|...|++++|+..|++.++..+. +...+..+..++...++.++
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 21 3444444444444444444444444444443211 23334444444444444433
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=0.00029 Score=56.45 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=62.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCC
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDM------KV-----STLNAMLEAYCMNGLPTEADLLFENSHNM-----GVT 427 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 427 (500)
......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555555432210 12 26667777777777777777777766653 113
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010807 428 PD-SSTY----KLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRFFLEAL 472 (500)
Q Consensus 428 p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll 472 (500)
|+ ...| .....++...|++++|+..|++..+ .|+.+........+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 43 4456 6677777777777777777777754 25555555444433
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00029 Score=54.62 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEA 404 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 404 (500)
+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 34455556666666666666555321 111 35555566666666666666666666654321 2 4555666666
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.90 E-value=0.00014 Score=68.47 Aligned_cols=90 Identities=11% Similarity=-0.043 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
...|..+..+|.+.|++++|++.+++..+... -+...|..+..+|...|++++|+..|++..+.. +-+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45667777777777777777777777776542 356777777777777777777777777776653 2245566666666
Q ss_pred HHHcCCHHHHHH
Q 010807 440 YTKANMKELVQK 451 (500)
Q Consensus 440 ~~~~g~~~~a~~ 451 (500)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00017 Score=67.91 Aligned_cols=137 Identities=3% Similarity=-0.094 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
.|..+...+.+.|++++|+..|++..+.- +. .......+++ .+. -+.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~-------~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADG-------AKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHH-------GGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHH-------HHH-HHHHHHHHHHHHHHHH
Confidence 45667777888888888888887776410 00 0000000000 000 0113445556666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
+.|++++|++.+++.++... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665432 245566666666666666666666666665542 224555555555555555555554
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00019 Score=58.52 Aligned_cols=63 Identities=16% Similarity=-0.002 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|++....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4556666666666666666666666666542 24566666666666666666666666666554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=4.5e-05 Score=58.41 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 304 QAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
|++++|+..|++.++.+. +.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444443320 1122334444444444444444444444444432 1223344444444444444444444
Q ss_pred HHHHHHH
Q 010807 382 IFDELSK 388 (500)
Q Consensus 382 ~~~~~~~ 388 (500)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00011 Score=60.00 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHS--------K---------EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.+......+.+.|++++|+..|.+.+.. . .+.+...|..+..+|.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555544432 0 0113456777778888888888888888887775
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
. +.+...|..+..+|...|++++|...|+...+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4 4457778888888888888888888888887754
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.00094 Score=66.50 Aligned_cols=173 Identities=6% Similarity=-0.051 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ- 304 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~- 304 (500)
.++|++.++++...... +...|+.--..+...|+ ++++++.++++.+...+ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45667777777765544 55556655555555555 77888888887776554 6666766666666777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---------
Q 010807 305 -AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------- 373 (500)
Q Consensus 305 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 373 (500)
+++++++.++++.+..+. +..+|+.-...+.+.| .++++.+.+..+.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668888888888776444 7777777777777777 7777888877777654 34566666665555442
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 374 -----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 374 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
+.++++++.+++.....+ -|...|+.+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 557899999998888754 378899988888888777544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=7e-05 Score=69.61 Aligned_cols=60 Identities=12% Similarity=-0.112 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|++..+
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444321 2344444444445555555555555544443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.0001 Score=71.77 Aligned_cols=125 Identities=6% Similarity=-0.028 Sum_probs=80.0
Q ss_pred HHhcCCHhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHH
Q 010807 335 YGKARLQGKAEYVFQKMTAM---KYTP----SFITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTLNA 400 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~ 400 (500)
+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..++++..+ .|. +-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777666542 1112 245677777777778888887777776654 222 112456777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHN-----MGV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...|.+++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777653 221 122 234455566777778888888888887753
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=6.8e-05 Score=72.93 Aligned_cols=125 Identities=3% Similarity=-0.043 Sum_probs=91.0
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CC-CCC-HHHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----KY-TPS-FITYE 364 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~ 364 (500)
.+...|++++|+.++++.++. -..+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678899998888776542 1111 2457888888999999999998888876542 21 122 56788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-----CCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 365 CIITMYGYCDNVSRAREIFDELSK-----LGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.|...|...|++++|+.++++..+ .|.. ....+.+.+-.++...+.+++|..+|.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887764 3432 2244566777888888999999999988875
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.001 Score=52.56 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
...|...+..++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| ++..+..|...|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 333333344444444444444432 33444444444444 455555555555555544 34455555555555
Q ss_pred ----cCChhhHHHHHHHHHhCC
Q 010807 408 ----NGLPTEADLLFENSHNMG 425 (500)
Q Consensus 408 ----~g~~~~A~~~~~~m~~~~ 425 (500)
.+++++|..+|++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.0012 Score=65.67 Aligned_cols=170 Identities=8% Similarity=-0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA----------FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR- 339 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 339 (500)
-++|++.++++...... +...|+.--.++.+.++ ++++++.++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35667777777765433 44555544444444444 66777777777665443 6666666666666666
Q ss_pred -CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 010807 340 -LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN--------- 408 (500)
Q Consensus 340 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 408 (500)
+++++.+.++.+.+.. +-+...|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5567777777766654 335666666666666666 666666666666665433 566666666555542
Q ss_pred -----CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 409 -----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 409 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+.++++++.+++++... +-|...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455666665555442 2244455554444444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=8.6e-05 Score=69.01 Aligned_cols=132 Identities=8% Similarity=-0.078 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP------------------TFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
....+..+...+.+.|++++|+..|++.+.. .|+.. .|..+..+|.+.|++++|...++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667888889999999999999999998774 34433 788889999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHhC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 424 (500)
.++.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++..+|.+|...
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88864 446888999999999999999999999998875422 45555555555 33445667778888877654
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.00068 Score=54.26 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAP------DI-----YTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.+......+.+.|++++|+..|+..++..... +. ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677777777777777766543221 11 1444444445555555555554444443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=9.8e-05 Score=55.55 Aligned_cols=63 Identities=11% Similarity=-0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+..+...+...|++++|.+.|++..+... .+...|..+..+|...|++++|+..+++....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444555555555555555555544321 23445555555555555555555555555443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00016 Score=54.35 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK------VSTL 398 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 398 (500)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4455666666666777777777776666543 335666667777777777777777777777664321 2 4455
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~ 419 (500)
..+..++...|++++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 555666666666666554444
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0017 Score=46.46 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
..+..+...+...|++++|...|++..+... .+...+..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444455555555555555555555554431 234555555555555566666665555555432 22344444444443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.0018 Score=49.00 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+...|+...+.. +.+...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555543 33455666666666666666666666666665432 245566666666666666666666666655
Q ss_pred h
Q 010807 423 N 423 (500)
Q Consensus 423 ~ 423 (500)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.00083 Score=50.90 Aligned_cols=78 Identities=5% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|+..|++..+..+ .+...+..+...|...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554422 245556666666666666666666666665543 23355566666666666666666666665554
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.00085 Score=49.44 Aligned_cols=64 Identities=22% Similarity=0.130 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666666665422 455666666666666666666666666543
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.003 Score=45.05 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 445555555666666666666666655532 23455556666666666666666666666665432 2445555555444
Q ss_pred Hh
Q 010807 406 CM 407 (500)
Q Consensus 406 ~~ 407 (500)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00053 Score=54.76 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=45.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV----------SRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+.+++|...++...+.. +-+...|..+..++...+++ ++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445566666666665543 33455566565565555443 3555555555554422 4555555555555
Q ss_pred hcC-----------ChhhHHHHHHHHHhC
Q 010807 407 MNG-----------LPTEADLLFENSHNM 424 (500)
Q Consensus 407 ~~g-----------~~~~A~~~~~~m~~~ 424 (500)
..| ++++|++.|++.++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 543 455555555555543
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.21 E-value=0.0016 Score=52.02 Aligned_cols=70 Identities=6% Similarity=-0.142 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV----------DQVNALFKELHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 265 (500)
+.+.+++|++.+++..+.. +.+...|+.+..++...+++ ++|+..|++.++.... +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4556666666666666432 44566666666666666554 3555555555554333 444555555555
Q ss_pred hhc
Q 010807 266 GKN 268 (500)
Q Consensus 266 ~~~ 268 (500)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.0052 Score=45.10 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666666655433 445566666666666666666666665543
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0054 Score=58.53 Aligned_cols=85 Identities=7% Similarity=-0.076 Sum_probs=43.7
Q ss_pred cCCHhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHH
Q 010807 338 ARLQGKAEYVFQKMTAM---KYTPS----FITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTLNAMLE 403 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~ 403 (500)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. +-...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666666554431 11121 34555666666666666666666655543 121 112334556666
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~ 422 (500)
.|..+|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0039 Score=59.51 Aligned_cols=87 Identities=13% Similarity=-0.033 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSK-----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----G-VTPD-SSTYKLLY 437 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li 437 (500)
..|++++|+.++++..+ .|. +....+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999998765 221 112468999999999999999999999987642 2 1333 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 010807 438 KAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.012 Score=56.29 Aligned_cols=90 Identities=6% Similarity=-0.080 Sum_probs=49.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMK---YTPS----FITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTL 398 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~ 398 (500)
..+...|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.++++..+ .|. +-...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666665421 1122 34556666666666666666666665543 121 1123455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666544
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.72 E-value=0.044 Score=50.30 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
+..+|.++...+...|++++|+..+++....+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555554432 3444444444444555555555555554444
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.25 Score=45.32 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 5567777777666666777888887777777664 56666666667777777777777777776665 3444444
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.011 Score=56.48 Aligned_cols=106 Identities=11% Similarity=-0.025 Sum_probs=78.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLG---KDM----KVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----G-VTPD-SST 432 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~ 432 (500)
+..+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|+.++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887621 112 3568899999999999999999999987642 2 2333 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQN---GIVPNKRFFLEAL 472 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll 472 (500)
++.|...|...|++++|..++++..+- -+-|+......+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 899999999999999999999988753 2334544444433
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.58 E-value=0.031 Score=58.42 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=100.9
Q ss_pred HHHHHcccCCHHHHHH-HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLE-VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 193 (500)
.+......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .- .....
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l-- 663 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELAL-- 663 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHH--
T ss_pred HHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhh--
Confidence 3444445688888876 44221 112234778888899999999887763221 11 12223
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|+++.|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+.
T Consensus 664 --~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 664 --KVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp --HHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred --hcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 677899999886554 3678999999999999999999999988753 3445555555777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
..++.+.....|. ++....+|.+.|++++|++++.++
T Consensus 726 ~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 726 LVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666555555432 233344455566666666665543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.38 E-value=0.17 Score=52.85 Aligned_cols=152 Identities=10% Similarity=0.046 Sum_probs=89.7
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 230 CAQARNVDQVNA-LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 230 ~~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (500)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.- . .- .......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~~----f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-QK----FELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-HH----HHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-hh----eehhhhcCCHHH
Confidence 345677777766 44211 11223366677777788888877665311 1 11 223455688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|.++.+.+ .+...|..+...+.+.++++.|+..|..+.. |..+...|...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 87776432 3677888888888888888888888876643 33444455556666665555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
.|. ++.-..+|.+.|++++|++++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 431 23334445556666666666554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.24 E-value=0.013 Score=42.51 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=29.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+...|++++|...|+++.+... .+.. .+..+..+|...|++++|+..|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555432 2344 5555555555555555555555555543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.16 E-value=0.11 Score=37.21 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 394 KVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|+..+..+..++...++ .++|..++++..... +-+......+...+.+.|++++|+.+|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 345555555544432 223444444444555555555555555555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.13 E-value=0.017 Score=41.82 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=30.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..+...|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34445555555555555555432 22334 55555555555566666666665555543
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.76 E-value=0.08 Score=41.72 Aligned_cols=80 Identities=14% Similarity=-0.059 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
.+.+-|.+..+.| .++..+...+..++++.+ ++++++.+++.+.+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344444444433 244444444445555544 3445555555554433 11 122333334444555555555555
Q ss_pred HHHHHhC
Q 010807 418 FENSHNM 424 (500)
Q Consensus 418 ~~~m~~~ 424 (500)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.64 E-value=0.11 Score=37.30 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555556555543333 5677777777776543 25666666677777777777777777777765
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.34 Score=39.15 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=23.8
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+.|+++.|.++.+++ .+...|..|.+.....|+++-|++.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555555444 14455555555555555555555555543
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.58 E-value=0.54 Score=35.80 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010807 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (500)
..++.+...|+.|+-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333344444444444444443221 12333334444444444444444444444444333
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.12 Score=40.71 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELV 449 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a 449 (500)
.+..+.+-|.+..+.+. ++..+...+..++++.+ ++++++.+|++..+.. .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34555666665555543 56666667777777766 4557777777766653 23 345555666677777777777
Q ss_pred HHHHHHHHHC
Q 010807 450 QKLLKRMEQN 459 (500)
Q Consensus 450 ~~~~~~m~~~ 459 (500)
.++++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777653
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.39 E-value=0.17 Score=37.15 Aligned_cols=66 Identities=14% Similarity=-0.071 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...+..|...+.+.|+++.|...|+...+.. -.+...++..|..+|.+.|++++|+.+++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444455555555666666666555544310 1123455666666666666666666666666553
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.34 E-value=0.41 Score=42.19 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 196 KAKALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
..+....|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.++....-+..++......+++
T Consensus 175 Al~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 566778888888888764 455 55788888888884 8899999999988876543346777777787877
Q ss_pred c-CCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 010807 268 N-GMIKEMESVLSRMKSNQCK--PDIITFNL 295 (500)
Q Consensus 268 ~-g~~~~a~~~~~~m~~~~~~--~~~~~~~~ 295 (500)
. |+.+++.+.+++....... |+....+.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 4 8888888888888887655 55444433
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.9 Score=36.71 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=92.3
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
....|+++.|.++.+++ .+...|..|.......|+++-|...|..... +..+.-.|...|+.++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45679999999998876 3788999999999999999999999987653 34566667778888887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.++-+.....|- ++.-..++...|+++++.++|.+.-. .|... ......|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 777766666552 46666778888999999999865332 22111 1122356777787777655
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.15 E-value=0.77 Score=34.98 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
.++..++.+...|..+....++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444444455555555444443221 23444444445555555555555555555554444
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.14 E-value=0.15 Score=44.93 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhh
Q 010807 343 KAEYVFQKMTAMKYTPS---FITYECIITMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTE 413 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~ 413 (500)
.|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344444444442 233 3345555555555 266666666666666644322355555556666553 66666
Q ss_pred HHHHHHHHHhCCCC
Q 010807 414 ADLLFENSHNMGVT 427 (500)
Q Consensus 414 A~~~~~~m~~~~~~ 427 (500)
|.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666655443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.00 E-value=0.28 Score=35.87 Aligned_cols=66 Identities=5% Similarity=-0.034 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESI------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
+..-+..|...+.+.|+++.|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445566666666777777776666654421 1123444555555555555555555555555543
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.04 E-value=0.27 Score=38.31 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHHHHCC
Q 010807 324 TLPTFNSMIINYGKARLQ------GKAEYVFQKMTAMKYTPSFI----TYECIIT---MYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----~~~~li~---~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
|..+|-..+....+.|+. ++..++|++.... ++|+.. .|--+-- .+...+|.++|.++|+.+....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5556666655553 344310 0100000 0122356666666666665443
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 427 (500)
-+. ..+|-.....-.++|+...|.+++...+..+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 333 555555555555666666666666666655533
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.00 E-value=1.2 Score=41.59 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=56.2
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-----SGCRPDPSVYN 184 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 184 (500)
...+++.....|++.+|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566667799999998888887764 66888999999999999999999999988754 48888876643
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.25 E-value=0.55 Score=36.56 Aligned_cols=115 Identities=9% Similarity=-0.005 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHhccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDNV------SRAREIFDELSKLGKDMKVS-TLNAMLE------AYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 424 (500)
-|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566777777777767777 7788888887764 444321 1111111 123448999999999998764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 425 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
.-.- ...|......-.+.|+...|.+++.+....+-.| ...+...++-.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 3222 7777777777789999999999999999876554 34445555444
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.02 E-value=0.5 Score=35.74 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTE---ADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
++..+--.+.+++.+..+... ++.++++....+ .| .....-.|.-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445544444333 445555444432 12 122333334455555555555555555543
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.86 E-value=6.7 Score=37.32 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHhhcCC
Q 010807 198 KALAKALGYFQKMKG----MERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYT--YNGVMDAYGKNGM 270 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~--~~~ll~~~~~~g~ 270 (500)
++++.|++.+..+.+ ......+......++..|...|+++...+.+..+.+. |..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 556666665544432 1234555667778888888888888887777665433 32222211 1222222222332
Q ss_pred HHH--HHHHHHHHH---hCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHh
Q 010807 271 IKE--MESVLSRMK---SNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPT---LPTFNSMIINYGK 337 (500)
Q Consensus 271 ~~~--a~~~~~~m~---~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 337 (500)
.+. -..+.+... +..+.. -......|...|...|++.+|.+++.++... +.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 111221111 111111 1223456778888899999999999887532 22211 3466777888889
Q ss_pred cCCHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHH
Q 010807 338 ARLQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNA----MLEAYC 406 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~----li~~~~ 406 (500)
.+++.+|..++..+.. ....|+ ...+...+..+...+++.+|...|.++.+. ...-|...+.. ++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999988887642 222222 345677788888889999888887776541 11113322222 222222
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA--NMKELVQKLLKR 455 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~ 455 (500)
-.+....-..++.........++...|..++.+|... .+++.+.+.|..
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222233333322222235677888888888664 356666655543
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.75 E-value=0.48 Score=44.42 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 467 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 467 (500)
..++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334445555555555555555554432 33455555555555555555555555555432 255555544
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=3.4 Score=39.40 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----hcc
Q 010807 234 RNVDQVNALFKELHES-----ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSY----GKR 303 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~----~~~ 303 (500)
|+++.|++.+..+.+. ...........++..|...|+++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666542 24446677888888899999998888877766554 322222 23333322 222
Q ss_pred CCHHH--HHHHHHHHH---hCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCC---HHHHHHHHHHH
Q 010807 304 QAFDK--MEQVFKSLM---HSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTA--MKYTPS---FITYECIITMY 370 (500)
Q Consensus 304 ~~~~~--a~~~~~~~~---~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~---~~~~~~li~~~ 370 (500)
...+. -..+.+.+. +..+-.. ......|...|...|++.+|..++..+.. .|.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 111111111 1111111 12234566667777777777777777654 222111 24555666677
Q ss_pred hccCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 371 GYCDNVSRAREIFDELSK----LGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
...+++.+|..++.++.. ....|+ ...+..++..+...++|.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777766532 211121 2344555666666777777766665554
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.59 E-value=1.2 Score=33.62 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHcCCH
Q 010807 159 GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNV 236 (500)
Q Consensus 159 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~ 236 (500)
.....+.+-|.+....|. ++..+--.+..+++++. ...+..+++.+++.+.... .| .....-.|.-++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 334555566666555443 56666556666777765 5677778888888877521 22 233444566677888888
Q ss_pred HHHHHHHHHHHhC
Q 010807 237 DQVNALFKELHES 249 (500)
Q Consensus 237 ~~a~~~~~~m~~~ 249 (500)
++|.+.++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887765
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.92 Score=46.13 Aligned_cols=51 Identities=10% Similarity=-0.066 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 427 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 427 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
+-+..-|..|.....+.+++++|.+.|+..... +-+......+|+-|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 445667888888888888888888888888754 466677788888887654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.74 E-value=1.3 Score=45.17 Aligned_cols=50 Identities=6% Similarity=-0.093 Sum_probs=26.7
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|...|+++.|+++-++..... +-+-.+|-.|..+|...|+++.|+-.++.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 444555555555555555532 22355555555555555555555555554
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.32 E-value=19 Score=37.55 Aligned_cols=246 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHH
Q 010807 228 RACAQARNVDQVNALFKELHESIL-------APDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDII--TFNLLI 297 (500)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~--~~~~li 297 (500)
-+....|..+++..++.......- .+....-..+.-+++-.|. -+++.+.+..+....- +... .--+|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 334455555567776666544211 0111112222223322332 2456666666555321 1111 122344
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcc
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI--INYGKARLQGKAEYVFQKMTAMKYTPSFIT--YECIITMYGYC 373 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 373 (500)
..|...|+-+....++..+.+.. +..+...+. -++...|+.+.+..+.+.+.... .|.... ..++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 45667788888888887766532 333333333 34446788888888888887642 222222 12445578888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKL 452 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 452 (500)
|+.....+++..+.+.. ..++.-.-.+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99888888988888643 2233333333344555777777788887766654 45554444455555555543 677888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 010807 453 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 483 (500)
Q Consensus 453 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 483 (500)
+..+.. .+|..+=...+.+++..|.+..
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCc
Confidence 888874 3577777778888887776643
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.25 E-value=12 Score=40.61 Aligned_cols=21 Identities=10% Similarity=-0.146 Sum_probs=11.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 010807 260 GVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~ 280 (500)
.+..+|...|++++|.+.|.+
T Consensus 847 l~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 334455556666666666544
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.46 E-value=5.7 Score=28.41 Aligned_cols=48 Identities=6% Similarity=0.088 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.-++..-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666666665554
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.40 E-value=27 Score=37.88 Aligned_cols=145 Identities=12% Similarity=-0.026 Sum_probs=95.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-------------------
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY------------------- 356 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 356 (500)
++..+.+.+.++.+.++..- .+.+...--.+..+|...|++++|...|++.-. |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 33344445555555443322 233555555677888899999999999976421 11
Q ss_pred ----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 357 ----TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 357 ----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
..-..-|..++..+.+.+.++.+.++-....+...+-+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 011234677888888899999988888776653322222 3688899999999999999999888776543
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 010807 429 DSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~ 448 (500)
-...+..|+...+..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667777777776665443
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.35 E-value=16 Score=31.71 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=74.2
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
..+-+.|++++|++....-.+.. +.|...-..++..+|-.|++++|.+=++...+. .|+...-..+...++ .
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI----~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV----K 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH----H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHH----H
Confidence 45667899999999888777764 778999999999999999999999999988775 454433322222222 1
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 010807 197 AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACA--QARNVDQVNALFKELHE 248 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~ 248 (500)
...... ++|.-- ...++. ....-...++.+.. ..|+.++|..+-.++.+
T Consensus 77 aE~~R~--~vfaG~-~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 AAQARK--DFAQGA-ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHH--HHTTSC-CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHcCC-CCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111111 111110 001111 11223334444443 46899998888877754
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.98 E-value=0.00021 Score=66.99 Aligned_cols=219 Identities=12% Similarity=0.153 Sum_probs=126.2
Q ss_pred CCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010807 92 DKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM 171 (500)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (500)
+...+.+.+++|.++.++.....+++...+.|.+++-+..+.-.++.. -+..+=+.|+.+|++.++..+-.+++.
T Consensus 66 ~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-- 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-- 140 (624)
T ss_dssp TSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS--
T ss_pred ccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc--
Confidence 334566668888999999999999999999999998888777666542 234455788999999998775444431
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 172 RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 172 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
.|+..-...+..-|. ..|.++.|.-+|..+... ..|...+.+.|++..|.+.-+..
T Consensus 141 -----~~N~A~iq~VGDrcf----~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArKA----- 196 (624)
T 3lvg_A 141 -----GPNNAHIQQVGDRCY----DEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARKA----- 196 (624)
T ss_dssp -----CCSSSCTHHHHHHHH----HSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTTC-----
T ss_pred -----CCCcccHHHHHHHHH----HccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 355555555666665 445566666666555432 22333344455555444322211
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
-++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++-+.+++.-... .......|+-|
T Consensus 197 -ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 197 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp -CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred -CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 14455555556666666555443332222211 111234455566666666666666665532 23355666666
Q ss_pred HHHHHhcCCHhHHHHH
Q 010807 332 IINYGKARLQGKAEYV 347 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~ 347 (500)
...|++- ++++..+.
T Consensus 270 aILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 270 AILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHHSS-CTTHHHHH
T ss_pred HHHHHhc-CHHHHHHH
Confidence 6666654 33443333
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.77 E-value=33 Score=34.08 Aligned_cols=309 Identities=7% Similarity=-0.032 Sum_probs=161.0
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHcC
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY----NALITAHLHT 193 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~ 193 (500)
..+.|++..+..+...+.. ++. ....|..+...+ .....++...++.+- |+.... +..+..+.
T Consensus 16 a~~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~------~~~p~~~~Lr~~~l~~l~-- 83 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDL-MNQPAVTVTNFVRAN------PTLPPARTLQSRFVNELA-- 83 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC------TTCHHHHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC------CCChhHHHHHHHHHHHHH--
Confidence 3456788777766555432 222 112333333222 122344444444332 333222 33334444
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH-
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK- 272 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~- 272 (500)
+.+++...+.++.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|.+.
T Consensus 84 --~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 84 --RREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp --HTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH
T ss_pred --hCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH
Confidence 33345544443322 2445555556777788889988888877777666533 4456677888888766543
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCCCHHHHHH---HHHHHHhcC
Q 010807 273 -EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---------KEKPTLPTFNS---MIINYGKAR 339 (500)
Q Consensus 273 -~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~---li~~~~~~~ 339 (500)
....=++.+...| +...-..++... ..+ .....+.+..+... ...++...-.. .+.-+.+ .
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l-~~~-~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQM-PAD-YQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTC-CGG-GHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhC-CHH-HHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 3444445555543 222222222211 011 11001111111111 01223322122 2222333 4
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFIT----YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
+.+.|...+....... ..+... ...+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 7789999998886543 233322 2334444445553556666666655433 34444555555566789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|+.|..... .......-+.+++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876422 2344445566788899999999999999875
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.57 E-value=9.3 Score=29.00 Aligned_cols=61 Identities=5% Similarity=0.042 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
.-+...-++.+....+.|++.+..+.+.+|-+.+|+..|.++|+.++.+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3445555555656666677777777777777777777777777666543 122334455444
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.51 E-value=10 Score=27.16 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666655543
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.97 E-value=53 Score=34.35 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=67.5
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN---SMIINYGKARLQ 341 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~ 341 (500)
+.-.|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... ..| ..-|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCH
Confidence 445555555555555554431 111222222222333455666666666555542 111 11121 233345556666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLFEN 420 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 420 (500)
.....++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+.---.+.-+....|.. .+|+.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 65555666665531 1122222222223333455455555555444433 23333333333333334443 456666666
Q ss_pred HHh
Q 010807 421 SHN 423 (500)
Q Consensus 421 m~~ 423 (500)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 653
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.54 E-value=15 Score=27.83 Aligned_cols=71 Identities=6% Similarity=-0.031 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.|+..+--.+..+++++. ...+..+++.+++.+.... .......+--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 455555444555555554 4556667777776665421 1112344455556677777777777777776654
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.98 E-value=13 Score=28.22 Aligned_cols=59 Identities=8% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
+..+-++.+...++.|++....+.+.+|-+.+|+..|+++|+-+..+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555666677777777777777777777777777666544 222333454444
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.65 E-value=8.7 Score=36.35 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+...+...|.+.|++++|.+.+.++......+ -...+-.+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45567777777777777777777776532222 245566666777777777777777766543
No 254
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.75 E-value=29 Score=31.64 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=45.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
....++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+....++..+...|+-+......
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3577888888889999999999888643221 23445555555554333 345677788887777554433333
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.32 E-value=0.00044 Score=64.85 Aligned_cols=243 Identities=12% Similarity=0.166 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 180 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 259 (500)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 259 (500)
...|..|..+.. ..+.+.+|++-|-+ .-|+..|..++.+..+.|.+++-++.+.-.++..-+| ..=+
T Consensus 54 p~VWs~LgkAqL----~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDt 120 (624)
T 3lvg_A 54 PAVWSQLAKAQL----QKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVET 120 (624)
T ss_dssp CCCSSSHHHHTT----TSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTH
T ss_pred ccHHHHHHHHHH----ccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHH
Confidence 345666666665 33444444443322 1244456677777777777777776665554443222 2234
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-------------------
Q 010807 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK------------------- 320 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------------- 320 (500)
.|+-+|++.+++.+..+++. .||..-...+.+-|...|.++.|.-+|..+....
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777776555433322 3455555666667777777777776666542110
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 321 -EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 321 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
-..++.||-.+-.+|...+.+.-|.-.--.+.-. +| -...++..|...|-+++-+.+++.-.... .....+|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 0225567777777777777776665544444432 22 12346777888888888888888776432 35688899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
-|.-.|++- ++++-.+.++..-.. .| .-.+|++|.+...|.++.-++.+
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 998888876 455555555433221 11 22478899999999998887664
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.64 E-value=45 Score=30.91 Aligned_cols=164 Identities=10% Similarity=-0.075 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhCCCCCCHHHH----
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESI-LAP---DIYTYNGVMDAYGKN-GMIKEMESVLSRMKSNQCKPDIITF---- 293 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p---~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~---- 293 (500)
...|...|.+.|+.++..+++.....-- .-| .......+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4456666777777777766666543211 011 123345566666553 2333334444433321100 11111
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHH-
Q 010807 294 --NLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM--KYTPSFITY- 363 (500)
Q Consensus 294 --~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~- 363 (500)
.-++..|...|++.+|.+++.++.+.--.. -...|..-+..|...++..++...+...... .+.+++...
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 246677777777777777777665531111 1234555566677777777777777665432 122333222
Q ss_pred ---HHHHHHHh-ccCCHHHHHHHHHHHH
Q 010807 364 ---ECIITMYG-YCDNVSRAREIFDELS 387 (500)
Q Consensus 364 ---~~li~~~~-~~~~~~~A~~~~~~~~ 387 (500)
..-...+. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22223345 6777777776665543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.84 E-value=7 Score=33.85 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
....+.|++++|++....-++.. +-|...-..|+..+|-.|++++|..-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45667899999999888877765 347888888999999999999998888776654
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.08 E-value=11 Score=35.73 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 271 IKEMESVLSRMKSNQC-KP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
+++..+......+... .. -..+...+...|.+.|+++.|.+.|.++...- ..--...+-.++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444322 11 12356788999999999999999999998653 33345678888999999999999999
Q ss_pred HHHHHHh---CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 347 VFQKMTA---MKYTPSFI--TYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 347 ~~~~m~~---~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.+.++.. .+-.|+.. ....-+..+...+++..|...|-+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9988754 23233322 112223345567889998888877655
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.83 E-value=25 Score=27.06 Aligned_cols=67 Identities=7% Similarity=-0.075 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|+..+--.+..++.+... ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344443334444443332 2334444444444322111222223334444555555555555554443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.89 E-value=25 Score=26.66 Aligned_cols=65 Identities=3% Similarity=-0.099 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 393 MKVSTLNAMLEAYCMNGLP---TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
|++.+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|+++.|.++.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444332 2344444444433211112333334444555555555555554444
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.37 E-value=21 Score=25.48 Aligned_cols=50 Identities=10% Similarity=-0.026 Sum_probs=20.6
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
+.+.|++++|..+.+.+. -||...|-+| +-.+.|..+++..-+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 444455555544433221 3444444333 2223444444444444444433
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.25 E-value=28 Score=26.82 Aligned_cols=68 Identities=3% Similarity=-0.080 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 392 DMKVSTLNAMLEAYCMNGLP---TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.|+..+--.+.+++.+..+. .+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34555555555555555443 345555555554321112333344444566666666666666665543
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.21 E-value=52 Score=29.98 Aligned_cols=78 Identities=12% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM--KELVQKLLKRMEQNGIVPNKRFFLEALET 474 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 474 (500)
..+.++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+....++..+.+.|+.+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577889999999999999999998642221 23344455555555433 45688888888888877666555444443
Q ss_pred H
Q 010807 475 F 475 (500)
Q Consensus 475 ~ 475 (500)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.20 E-value=21 Score=25.46 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 452 (500)
....++|..+-+-+...+. ...+--+-+..+.+.|+|++|..+.+.+. .||...|..|- -.+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3456777777766666542 22222222455778888888888877654 67877776664 3477888888877
Q ss_pred HHHHHHCC
Q 010807 453 LKRMEQNG 460 (500)
Q Consensus 453 ~~~m~~~g 460 (500)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 77777665
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.14 E-value=20 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=20.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.+.|+|++|..+.+.+. .||...|..|- -.+.|..+++...+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 344444444444443322 34444443332 22444444444444444433
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.07 E-value=20 Score=25.48 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=57.4
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
-..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. -||...|-+| +-.+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 356777777777776542 22222333455778899998887765433 5777777665 445788888888888
Q ss_pred HHHHhCCCCCCHHHHHH
Q 010807 419 ENSHNMGVTPDSSTYKL 435 (500)
Q Consensus 419 ~~m~~~~~~p~~~~~~~ 435 (500)
.++...| .|....|..
T Consensus 92 ~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 92 AGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHTCS-SHHHHHHHH
T ss_pred HHHHhCC-CHHHHHHHH
Confidence 7777776 555555543
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.13 E-value=25 Score=27.84 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~ 420 (500)
+..||.+.|++++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44555555555555555544
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.03 E-value=41 Score=27.65 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 010807 341 QGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 393 (500)
...+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344555555544443322 3344444444445555555555555544444444
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.03 E-value=60 Score=28.91 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCHHHHH
Q 010807 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA---RLQGKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
-+......+...|.+.+++.+|+..|-. |..-+...+..++.-+... |...++.- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 3677788888888899999998887741 1111345555555444443 33332211 1112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
. +--|...+++..|..+|+...
T Consensus 194 a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCHHHHHHHHHHHH
Confidence 2 223445788888888887664
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.97 E-value=63 Score=28.76 Aligned_cols=179 Identities=8% Similarity=-0.047 Sum_probs=98.0
Q ss_pred HhhhccCcchHHH----HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHH
Q 010807 102 KYVKVVRSEHCFL----LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMW----LFSEMRN 173 (500)
Q Consensus 102 ~~~~~~~~~~~~~----l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~ 173 (500)
.....|+.-+|+. +..++.+++++++|++++.. -...+.+.|+...|-+ +.+-..+
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~----------------ga~~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ----------------GALSFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------HHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 3334444444443 44455556777777776533 2223444566555444 3455556
Q ss_pred cCCCCCHHHHHHHHHHHHcCc----chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 174 SGCRPDPSVYNALITAHLHTR----DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 174 ~g~~p~~~~~~~li~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.+++++......++..+.... .+..-+.+|+.+-.+... ...-++.....+...|.+.|++.+|...|-.
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---- 159 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFML---- 159 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----
Confidence 677888777777777665422 133445555555555432 1245778888899999999999998887731
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 250 ILAPDIYTYNGVMDAYGKN---GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317 (500)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (500)
|-.-+...+..++.-+... |...++ +...-.+++ .|.-.++...|..+|+...
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 1100244454444444333 332222 111112222 3445577777777777654
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.88 E-value=62 Score=26.56 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010807 125 WLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (500)
..++.++|..|..++--.--+..|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 446666666666655223344556666666666677777777776666665555
No 272
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.80 E-value=58 Score=25.79 Aligned_cols=118 Identities=5% Similarity=-0.048 Sum_probs=67.9
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-HH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADT-------GIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDP-SV 182 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~ 182 (500)
.+.-++.+...+.++.|+-+.+.+.......+++ .++..+.+++...|++..|...|++.++. ..-+.. ..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3445566667788888888777654433223332 35677888999999999999999997542 111111 11
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 183 ~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
...+ .. ...... ......+...---+..+|.+.+++++|+.+++.+.
T Consensus 103 ~~~~-~~-------~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPST-GN-------SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccc-cc-------cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111 00 000000 01123455555567788888888888888887753
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.69 E-value=49 Score=24.92 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCK 287 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 287 (500)
.+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455777777778888888888777422111 22333344444444332 34566666666666544
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.08 E-value=31 Score=26.93 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 010807 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD 179 (500)
Q Consensus 127 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 179 (500)
++.++|..|..++--.--+..|......+-..|++.+|.++|+.-++.+-+|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 37778888877763344566788888888888888888888888888777773
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.46 E-value=34 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 010807 127 QCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS 181 (500)
Q Consensus 127 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 181 (500)
++.++|..|..++--.--+..|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3777888888877444456778888888999999999999999999888777543
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.73 E-value=61 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=12.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344445555555555555555543
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.08 E-value=1e+02 Score=27.38 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCCH
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 430 (500)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+...|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 467888888899999999999888643221 23444555555554433 34566788888776655433
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.29 E-value=1.1e+02 Score=27.42 Aligned_cols=188 Identities=9% Similarity=0.086 Sum_probs=0.0
Q ss_pred chHHHHHHHhhhccCc-------chHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010807 94 EPLVRTLNKYVKVVRS-------EHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMW 166 (500)
Q Consensus 94 ~~~~~~l~~~~~~~~~-------~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 166 (500)
+.....+......|+. ..++.+...+.+++++++|+++ ...-...+.+.|+...|-+
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidL----------------L~~GA~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDI----------------LASVSQTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH----------------HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHH----------------HHHHHHHHHHCCCcchHHH
Q ss_pred HH----HHHHHcCCCCCHHHHHHHHHHHHcCcc----hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 167 LF----SEMRNSGCRPDPSVYNALITAHLHTRD----KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238 (500)
Q Consensus 167 ~~----~~m~~~g~~p~~~~~~~li~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 238 (500)
+- +-..+.++++|......++..+..... +..-+.+|+.+=.+.- ....-|......+...|.+.+++.+
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g--~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG--DYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS--SCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHccCCHHH
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 239 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
|...| -.|-.+....|..++.-+...+...++--++.+..=. |.-.++...|..+|+.+.+
T Consensus 155 Ae~H~----ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~---------------yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 155 AEKHL----VLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLP---------------YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHH----TTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH----HhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---------------HHHhCCHHHHHHHHHHHHH
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.50 E-value=1.3e+02 Score=27.71 Aligned_cols=300 Identities=8% Similarity=-0.030 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRP---DPSVYNALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
....+...|.+.|+.++..+++...... +.-| .......++..+....+ ....++-..+.+++.......-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777666666654321 1111 22334455555543322 22334444455555543211000011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD-----IYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFN 294 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~ 294 (500)
.=..++..|...|++.+|.+++..+.+.=-..| ...|..-+..|...+++.++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 123578899999999999998888865311111 244566677888899999999888876543 2223333221
Q ss_pred H----HHHHHh-ccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHhHHHHHHH-HHHhCCCCCCHHH
Q 010807 295 L----LIDSYG-KRQAFDKMEQVFKSLMHSKEKPT------LPTFNSMIINYGKARLQGKAEYVFQ-KMTAMKYTPSFIT 362 (500)
Q Consensus 295 ~----li~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~ 362 (500)
. -...+. ..++|..|...|-+....-.... ...|..+. +.. .++..+...++. .....-..|....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhccccccccCCccHHH
Confidence 1 122345 78899998887766532101111 12232222 222 233222222221 1111112355555
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
+..++.+|. .+++.+...+++.... .+..|......+-..+-+ -...+ +.++.. +-...++..+...+.-
T Consensus 259 l~~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--Ir~~~---L~~i~~---pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 259 MKSVAEASH-KRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--MLEQN---LCRIIE---PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--HHHHH---HHHHHT---TCSEEEHHHHHHHHTC
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--HHHHH---HHHHhH---hhceeeHHHHHHHHCc
Confidence 666666654 5677766666665433 233454432111100000 00111 111111 1123444555444422
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 010807 443 ANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 443 ~g~~~~a~~~~~~m~~~g 460 (500)
..+++...+-+|...|
T Consensus 329 --s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDK 344 (394)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHCC
Confidence 5677788888887664
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.56 E-value=77 Score=24.66 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=11.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
|......+...|++.+|.++|+.-++.+
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3333333344444444444444443333
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.03 E-value=42 Score=26.17 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCK 287 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 287 (500)
.+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777777788888888888777422111 22333344444444322 34566666666665544
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.34 E-value=72 Score=23.95 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCC
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGV 426 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 426 (500)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.+. .+....++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44555555566666666666655421111 12233333333333321 2344555555555443
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.59 E-value=98 Score=24.43 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 010807 344 AEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 393 (500)
..++|..|...|+-.. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4444555544443322 3344444444444555555555555544444444
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.28 E-value=55 Score=27.40 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010807 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178 (500)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (500)
+++.++|..|..++--.--+..|......+-..|++.+|.++|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35666777777766333445667777777777777777777777777766666
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.72 E-value=1.1e+02 Score=24.44 Aligned_cols=26 Identities=0% Similarity=-0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
..|+.+...|.+.|+.++|...+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 45666667777788888888776543
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.49 E-value=19 Score=31.14 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMW 166 (500)
Q Consensus 151 li~~~~~~g~~~~A~~ 166 (500)
.+...++.|+.+....
T Consensus 8 ~L~~A~~~g~~~~v~~ 23 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQ 23 (285)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 3444455565543333
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.33 E-value=2.6e+02 Score=27.73 Aligned_cols=115 Identities=5% Similarity=-0.107 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNG----VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (500)
+.+.|...+....+... .+...... +.......+...++...+........ +.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888877765432 23322222 22233334434566666666554432 3323333334445668888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
..|+.|..... .......-+..++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888755321 2344445566677788888888888877653
No 288
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.29 E-value=1.2e+02 Score=24.74 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----hhHHHHHHHHHhCCC
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-----TEADLLFENSHNMGV 426 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~ 426 (500)
+-.|.+.|+-.+.+|.+.| .|....-..++.+.-.-|.- ..|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567778888888888777 55333333334444444432 223344444444553
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.84 E-value=1.6e+02 Score=24.88 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAM--KYTP----SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
--++.+....++++|..++++..+. +.+. +.......+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3467777888888888888776542 2221 111112222222222222333344444422 345666666777
Q ss_pred HHHhcCChhhHHHHHHHHHh
Q 010807 404 AYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 78888888888888876653
No 290
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.71 E-value=1.3e+02 Score=24.09 Aligned_cols=54 Identities=19% Similarity=-0.071 Sum_probs=34.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCC----------------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVT----------------PDS-STYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~----------------p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+|-+..++..|+..++.++...+. -|. .-++.+...|.+.|+.++|...+..--
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 455566666666666666543322 233 345566668889999999999886543
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.35 E-value=2e+02 Score=27.12 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHhc
Q 010807 305 AFDKMEQVFKSLMHS--------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-T---PSFITYECIITMYGY 372 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~---~~~~~~~~li~~~~~ 372 (500)
..++...+++..... ++..+......++.. ..|+..++..+++.+..... . ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 445666666666543 233456666666554 46788888887777654321 0 001111111111111
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---
Q 010807 373 CD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAY---CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM--- 445 (500)
Q Consensus 373 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--- 445 (500)
.. .++ +-....| .++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|.
T Consensus 244 ~~~~~d--------------k~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p 308 (447)
T 3pvs_A 244 RSARFD--------------NKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADP 308 (447)
T ss_dssp CCCC-----------------CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCT
T ss_pred hhhccC--------------CccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCh
Confidence 10 000 0012222 233333 3456788888888888888766554444444444444443
Q ss_pred --HHHHHHHHHHHHHCCCC
Q 010807 446 --KELVQKLLKRMEQNGIV 462 (500)
Q Consensus 446 --~~~a~~~~~~m~~~g~~ 462 (500)
...|...++....-|++
T Consensus 309 ~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 309 RAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHHHHHHHHHhCCc
Confidence 23344444444444543
No 292
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.08 E-value=1.6e+02 Score=24.33 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 010807 373 CDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~ 393 (500)
-.|.+.|+-.+.+|++.|..|
T Consensus 48 GSDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 456666666666666666554
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.75 E-value=1.5e+02 Score=23.96 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 010807 218 PNIVTYNILLRACAQARN 235 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~ 235 (500)
++..+-...+..+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.62 E-value=25 Score=30.24 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=10.7
Q ss_pred hcCChhhHHHHHHHHHhCCCCC
Q 010807 407 MNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p 428 (500)
..|+.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444444445555555555443
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.10 E-value=51 Score=27.39 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPD 254 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (500)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4445667777777777776666554433
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.08 E-value=1.8e+02 Score=24.60 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNS--GCRP----DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 224 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (500)
-++++.-..++++|.+++++..+. ++++ +.......+..-+ ....-.-+..+.+.+.. ..+.....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki----~eR~~~L~~~L~~~l~~----~~~~~~~r 95 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKI----EQRREAISSKLSQSILS----SNEIVHLK 95 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHH----HHHHHHHHHHHHHHHHT----CSSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHH----HHHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 466777788888888887776542 2221 1122222233332 22223333344444432 34555566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
..+..+.+.|+.++|.++|-+..
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHH
Confidence 66777888888888888876654
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.85 E-value=1.4e+02 Score=24.88 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 010807 343 KAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 393 (500)
....+|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555554332 4445555555555566666666665555554444
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.54 E-value=1.4e+02 Score=22.86 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=18.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 403 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444445555555544443334444443344443333
No 299
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=37.24 E-value=19 Score=22.83 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTG 146 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (500)
.-+++.|+..|..+...+.++|+++
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3688999999999988887877654
No 300
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.06 E-value=1.2e+02 Score=22.29 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHH-HHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 198 KALAKALGY-FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 198 ~~~~~a~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.+.++-+.+ |+.+.. ..+.|++...-.-+..+...++++.|.++.-.+...
T Consensus 39 ~D~~KRL~~LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 39 DDISRRLALLREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 445554444 444443 455555444444455566788888888888777653
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.69 E-value=1.4e+02 Score=22.91 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=19.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555544433334444433334443333
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.03 E-value=97 Score=24.79 Aligned_cols=29 Identities=3% Similarity=-0.091 Sum_probs=15.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCCC
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPD 289 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 289 (500)
.+...+..|..+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444555555555555566666655544
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.93 E-value=1.2e+02 Score=23.35 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
+.+.|+.++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44555553322 233444444444455566666666555555555554444455544443
No 304
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.78 E-value=1.1e+02 Score=21.52 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
+..+.++....|+.|+..+..-++..|...
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 334444444445555554444444444433
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.44 E-value=3.2e+02 Score=28.81 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=67.5
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
..++..+...+..+-|.++..|+.. +...--.+..+|...|++++|...|++.- .|+..+......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~------- 879 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV------- 879 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG-------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc-------
Confidence 4466777777888777776655433 44444567788889999999999998753 344332211110
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
......++..... ......-|..++..+-+.+-++.+.++-+..++.
T Consensus 880 -------~~~~~~ll~~~e~---~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 880 -------LREFQEIAEKYHH---QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp -------GHHHHHHHHHTTT---CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------hhhhhhccCcccc---cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0011112222111 1223346778888888888888888888777654
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.41 E-value=1.1e+02 Score=23.32 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555544443344444443344443333
No 307
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.20 E-value=1.8e+02 Score=29.09 Aligned_cols=93 Identities=6% Similarity=-0.004 Sum_probs=49.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc----C----------C-hhhHHHHHHHHHhC-----CC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MN----G----------L-PTEADLLFENSHNM-----GV 426 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~----g----------~-~~~A~~~~~~m~~~-----~~ 426 (500)
..+...|++++|..+|....+.+. -..+.|.++.-.. .. + + ...|..+.+..... .+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDI--VITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Confidence 356678888888888876554221 1333444433322 21 1 1 12344444432222 22
Q ss_pred C-CCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 427 T-PDSSTYKLLYKA-----YTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 427 ~-p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
. .+..|+..|++. +.+.|+++.|++.++++ ++.|..
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~ 570 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPFS 570 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 2 244567666553 37899999999877654 455544
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.56 E-value=1.3e+02 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.|.+.|+-.+-+|++.|..|.-..-..++.+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555554443333333333333
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.25 E-value=1.7e+02 Score=22.99 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=47.5
Q ss_pred HhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHHC--CCCC-----CHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGVTP--DSSTYKLLYK-A-----YTKANMKELVQKLLKRMEQN--GIVP-----NKRFFLE 470 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~~--g~~p-----~~~~~~~ 470 (500)
...|++-+|-++|+..-...-.+ +...|..||+ . ..+.|+...|..++.+.... ++.+ |...+..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~~ 122 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRT 122 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHHH
Confidence 44599999999999987764455 5566777777 2 24689999999999988763 3333 3344444
Q ss_pred HHHHH
Q 010807 471 ALETF 475 (500)
Q Consensus 471 ll~~~ 475 (500)
.+..+
T Consensus 123 ~~~~~ 127 (161)
T 2ijq_A 123 TVTNA 127 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.96 E-value=1.4e+02 Score=22.37 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444444444444333334333333344444443
No 311
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=33.76 E-value=53 Score=23.06 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccchhhhhhhhhhcc
Q 010807 449 VQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAK 499 (500)
Q Consensus 449 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~l~~~~~~~~ 499 (500)
|.+.|.++.+.|..|+...+..+..+..-.--..-....+++|...++..|
T Consensus 36 a~~ay~rLk~~~~~~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 36 SKEAFLRIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhh
Confidence 566677777777777777777666665543333444455566655555544
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.82 E-value=3.2e+02 Score=25.70 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
.++.+.|+.++.+|.+.|..|....-..++.+...
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 35666666666666666555444433334444433
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.54 E-value=3.3e+02 Score=25.80 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc
Q 010807 79 SKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKK 158 (500)
Q Consensus 79 a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 158 (500)
...++.-+.....+.+-..++...+.-.|-.+....-|+.+-..|++++|-.+--...+. +--+..+.+.+-.+=..-
T Consensus 331 e~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g--iLRt~~Ti~rFk~vp~~p 408 (494)
T 1bpo_A 331 EENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG--ILRTPDTIRRFQSVPAQP 408 (494)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG--SSCSHHHHHHHTTSCCCT
T ss_pred cccchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc--cccCHHHHHHHhcCCCCC
Confidence 345666666665555444444444444454555556788888899999988876554432 444666666655555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 159 GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 159 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
|+..--+.+|..+.+.| ..+..----+++...
T Consensus 409 gq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp TSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 66666777777777665 334333333333333
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.84 E-value=1.5e+02 Score=24.16 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHHHHh---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 366 IITMYG---YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 366 li~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
+|+++. +-.|.+.|+-.+.+|++.|..|....-..++.+.-.-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 45788888888888888886663333333334443333
No 315
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.62 E-value=1.6e+02 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.017 Sum_probs=17.2
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHH
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQ 136 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~ 136 (500)
..+++.+-..|++++|...++.+.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 346666667788888888887764
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.31 E-value=1.5e+02 Score=22.67 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
+.+.|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 445555544332 23333343444445566666666555555555554444455544443
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.04 E-value=2.2e+02 Score=23.61 Aligned_cols=85 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Q 010807 75 EELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV 154 (500)
Q Consensus 75 ~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 154 (500)
|...|..+++.|....+-.+.+...+....+. ..+-.|.+.|.|++|.++|++..... ..+...-+.|...
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~-------qAV~VCiek~~f~kA~eiLkr~~~~~--~s~~kLr~kL~~I 157 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKE-------AAVIICIKNKEFEKASKILKKHMSKD--PTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------HHHHHHHHTTCHHHHHHHHHHHSTTC--GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH-------HHHHHHHHhcchHHHHHHHHHHhcCC--CCchHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLF 168 (500)
Q Consensus 155 ~~~~g~~~~A~~~~ 168 (500)
-.+.+-....++-|
T Consensus 158 I~~Kd~~H~~lqnF 171 (235)
T 3bu8_A 158 IREKNLAHPVIQNF 171 (235)
T ss_dssp HHHTCTTSHHHHTC
T ss_pred HhccCcccHHHHhc
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.40 E-value=1.5e+02 Score=22.72 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444444444444333344433333344444443
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.06 E-value=62 Score=26.01 Aligned_cols=91 Identities=10% Similarity=-0.047 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhh-cCCH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT---YNGVMDAYGK-NGMI 271 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~-~g~~ 271 (500)
+.|+++....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..+.
T Consensus 15 ~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 15 MLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 45556665555543221 11101112345555667777766777788888887665421 2223222222 2334
Q ss_pred HHHHHHHHHHHhCCCCCCH
Q 010807 272 KEMESVLSRMKSNQCKPDI 290 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~ 290 (500)
....++.+.+.+.|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 4556667777777766543
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.77 E-value=76 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcC
Q 010807 225 ILLRACAQARNVDQVNALFKELHES--ILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g 269 (500)
.++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444555566666666555 44445444444444444443
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.67 E-value=1.4e+02 Score=22.53 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555544332 23334444444 455566666666665555555554444455544443
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.86 E-value=1.5e+02 Score=22.88 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 280 RMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 280 ~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
.+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455565544432 23344444444 455666666666666555565555555555555544
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.86 E-value=1.4e+02 Score=19.79 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010807 414 ADLLFENSH 422 (500)
Q Consensus 414 A~~~~~~m~ 422 (500)
+.++++.+.
T Consensus 36 ~~el~~~l~ 44 (83)
T 2fu4_A 36 AEDLYKRLI 44 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.80 E-value=3e+02 Score=26.53 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC-----
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN----- 219 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 219 (500)
+..+|.+++.|...+.++.|..+..+..---...+..-+....-.+++...-.+++.+|.+.|.... ...+++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~--rkap~~~~a~g 308 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI--RKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--SSCSCSSSCSH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCcchhhhh
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 220 --IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 220 --~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
...+..++-+-.-.|+... ...+...+.+.....|..|..++ +.|+++.-..+++.
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 325
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=25.43 E-value=74 Score=22.69 Aligned_cols=52 Identities=6% Similarity=0.074 Sum_probs=35.2
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQ 160 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 160 (500)
.+...++...+.......|....|..+++.+.+.. . ..-|..++.++-+.|.
T Consensus 39 ~~L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~--~--~gWf~~fl~AL~~~g~ 90 (100)
T 2lwd_A 39 ECLINQECEEILQICSTKGMMAGAEKLVECLLRSD--K--ENWPKTLKLALEKERN 90 (100)
T ss_dssp TTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--C--THHHHHHHHHHHHHTC
T ss_pred HHCCHHHHHHHHHHHHccChHHHHHHHHHHHHhcC--c--CCcHHHHHHHHHHcCC
Confidence 45666677777777777788888888888776632 1 2446677777766664
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.23 E-value=1.2e+02 Score=23.29 Aligned_cols=57 Identities=4% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (500)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455544322 22233333333 4455666666655555555555444444444444
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.12 E-value=1.5e+02 Score=22.11 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=13.0
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.+..-.|.++++.+.+.+...+..|....++.+
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L 55 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSM 55 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 333344444444444433333333333333333
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.85 E-value=2.1e+02 Score=22.33 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=24.5
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 010807 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 388 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 444 (500)
+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444332 233344444444445555555555444 33344444444444444443
No 329
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.48 E-value=5.4e+02 Score=25.68 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.-.+|-.|.++|+.++|.++.++.... ++--...+...+..++
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 345778888999999999988766432 1111234455555555
No 330
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.02 E-value=1e+02 Score=25.48 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=86.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDII---TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT--FNSMIINY 335 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~ 335 (500)
.+...++.|+.+.+..+++.+.+.|..++.. -.+. +...+..|+.+-+. .+.+.|..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHH
Confidence 3455677899888888888777766554322 2223 33445567765444 4444554432211 11223344
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS---TLNAMLEAYCMNG 409 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g 409 (500)
+..|+.+-+..+++.....++.+ +..-.+.+. ..+..|+.+-. +.+.+.|..++.. .....+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 56677766666655432111111 111122222 23345665444 4444444433321 1223344455667
Q ss_pred ChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 410 LPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+.+-+..+ .+.|..++. .-.+. +...+..|+.+- ++.+.+.|..|+
T Consensus 162 ~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 162 SLSMVQLL----LQHGANVNAQMYSGSSA-LHSASGRGLLPL----VRTLVRSGADSS 210 (241)
T ss_dssp CHHHHHHH----HHTTCCTTCBCTTSCBH-HHHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred CHHHHHHH----HHcCCCCCCcCCCCCCH-HHHHHHcCCHHH----HHHHHhcCCCCC
Confidence 76544444 344544432 11222 233345666553 344445665554
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.48 E-value=1.3e+02 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 30 ~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 30 RSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444333333333333333333333
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.31 E-value=1.2e+02 Score=22.60 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=24.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444445555566677777766665556555555555544444
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.22 E-value=2.7e+02 Score=27.07 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (500)
+..-..-++..|.+.|-.+.|.++++.+-..-.. +...| ..+..|.++|+++.
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 3334444555555555555555555555433222 22333 33444555555544
No 334
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.10 E-value=2.1e+02 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCK 287 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 287 (500)
.+.++.-|...|+.++|.+.++++....+. .......+..+.-+.++ .+.+..++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456777777788888888888877532111 22333344444444332 34556666666665544
No 335
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.76 E-value=2e+02 Score=20.11 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
...+.|.++++.+...|. ..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 355666666666644433 2555555555554544333
No 336
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.02 E-value=1.4e+02 Score=18.72 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 010807 233 ARNVDQVNALFKELHESILA 252 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~ 252 (500)
.|+++.|+..+-+|...+..
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCS
T ss_pred CCCHHHHHHHHHcCcCCCCC
Confidence 44455555555444443333
No 337
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.86 E-value=59 Score=28.26 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=20.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+.
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34445566665444443 3343332221223344455566654443
No 338
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.31 E-value=3.2e+02 Score=21.85 Aligned_cols=111 Identities=13% Similarity=-0.060 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 358 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|.. ++...+..+.. .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 44444444555555555432 2233333332 24555555666666666553 34444444443 34566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 010807 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
.++.+.|. .++...+.++.+. ++...-...+.++...+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 66666665 3455555555543 455555555555555443
No 339
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.04 E-value=2.3e+02 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 164 AMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 164 A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
|.++.+++..-|+.|+..+...++..|.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455555555566666665555555554
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.76 E-value=3.9e+02 Score=23.84 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5667778888888888888887774
No 341
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.72 E-value=66 Score=28.64 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 345 EYVFQKMTAMKYTPSFI---TYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 345 ~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
..+.+.+.+.|..++.. -.+. +...+..|..+.+..++.. .|..+ |..-.+.|. ..++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HH
Confidence 34444556666554421 1222 3334556776665554432 12221 122222333 334556644 34
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 419 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 419 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
+.+++.|..+|..+ . +...++.|+.+ +.+-+.+.|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 44556676666543 2 33334566654 34455667766654
No 342
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.42 E-value=1.3e+02 Score=27.12 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 182 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNG 260 (500)
Q Consensus 182 ~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ 260 (500)
....++.-|. ..|+.++|...++++.. .. .....+...+..++-+. ...+.+..++..+.+.|+-+. ..
T Consensus 13 ~~~~ll~Ey~----~~~d~~Ea~~ci~el~~-p~-~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~----~~ 82 (339)
T 1ug3_A 13 KSKAIIEEYL----HLNDMKEAVQCVQELAS-PS-LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST----AQ 82 (339)
T ss_dssp HHHHHHHHHH----HHCCHHHHHHHHHTTCC-GG-GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH----HH
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHcCC-cc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH----HH
Confidence 3567788888 67779999999999863 11 11122333333333221 123456667777776654321 22
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHH-HhccCCHHHHHHHHH----HHHhCCCCCCHHHHHHHHHH
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDS-YGKRQAFDKMEQVFK----SLMHSKEKPTLPTFNSMIIN 334 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~-~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~li~~ 334 (500)
+..++ + ++++.+....+ -|....+-.-+-+ +...|-.. .-.++. .+...| ........++..
T Consensus 83 ~~~Gf------~---~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~-~~~l~~~~~~~l~~~g--~~~~fl~~vl~~ 150 (339)
T 1ug3_A 83 YYQGL------Y---EILELAEDMEIDIPHVWLYLAELVTPILQEGGVP-MGELFREITKPLRPLG--KAASLLLEILGL 150 (339)
T ss_dssp HHHHH------H---HHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCC-HHHHHHHHTTTHHHHT--CHHHHHHHHHHH
T ss_pred HHHHH------H---HHHhhChHhhcCccchHHHHHHHHHHHHHCCCCC-HHHHHHHHHHhhhccc--hHHHHHHHHHHH
Confidence 22222 2 23333333222 2565555443333 33333322 112222 222222 123445555666
Q ss_pred HHhcCCHhHHHHHHH
Q 010807 335 YGKARLQGKAEYVFQ 349 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~ 349 (500)
+.+....+.+..+|.
T Consensus 151 l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 151 LCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHHCHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHH
Confidence 666666666666665
No 343
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.42 E-value=1.3e+02 Score=18.52 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANM--KELVQKLLKRM 456 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m 456 (500)
+.++.+++.|+.++ ....|..+.|. ++.|++++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 44555555665442 23334555555 77788777776
Done!